>input_sequence_41541
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----------------------------------------------------------------------------ACTA
CTCTTACTGACATAGATAGAAGAAGGCCGTGGTGCTGAAAAATCCACTTCCATTGAAGGAAGCATGGAGACGAA---GAC
GACTCCGCTCCTGACTCCATACAAGATGGGCGACTTCAACCTGGCGCACAGGTCAGTTAATTACTCGATCGTTTCCTTAG
AATCTTGGGTCGCTGAAGTGACGCGGCCATGGTCGGCAACGCAACGCAGGGTTGTTCTCGCGCCGCTGACGCGGTGCAGG
TCGTACGGGAACCTCGCCCAGCCGCACAACGCGCTGTACTACGCGCAGAGGGCGGCGCCGGGCGTGCTCCTCGTCGCCGA
GGCCTGCGCCGTCTCCGAGGCCGCGCGGGGCTACCCGCACGTCCCCGGCCTGTGGAGCCAGGAGCAGGTGGAGGCGTGGA
AGCCGGTGGTCGACGCCGTGCACGGCAAGGGCGCCGTCTTCTTCTGCCAGCTATGGCACACGGGCCGCGTTTCGCCCACC
GGTAGAACATTATCCTCGTACCTT--TTT-CTTTTCAAATGATTATCCTCGTACCTATCGTGTTCG-------TTTTCGA
ATGGACGAATCAAAGTGTCAAGTCTCAATCATGTTGCACACAGAGTTCCAGCCTAATGGGCAAGCTCCGGTGTCGAGCAC
GGATAAGCAGGTGCCGCCTCAGGTCGCCCA--TGACGGCAGTGTCCTGGAGTTCGCGCCCCCTCGAAGGTTGGCGACGGA
GGAGATACCCCACATCGTCAACGACTTCCGGGTCGCCGCTAGGAACGCCATGCGAGCCGGTAATTAATGATCAACCATCC
ATGTCCCCAACAGTCCTCATCTTTTCTACGTACGTACGTAGTTTGCAACGCTGATCATCGTCGGTGATCGAAGGGTTCGA
CGGCGTGGAGATCCACGCCGGCAACGGGTACCTGATCGACCAGTTCATGAAGGACGGCGTCAACGACCGGACCGACGAGT
ACGGCGGCGGCCTAGAGAACCGCTGCCGCTTCGCCGCGGAGGTCATCGCGGCCGTGTGCCACGAGGCCGGCGCGGGCCGC
GTTGGCGTGCGCCTCTCCCCGTTCGCCGACTACGTCGACTGCGTGGACTCCGACCCGGAGGCGCTCGCGCTGCACGTGAT
CGGCGTCATGAACGGGCTCGGCGTCCTCTACTGCCACATGATCGAGCCGCGGATGTGCGTCAACGAGCGGATGATCCCGC
GCCGCCTGCTGCCGTTCAGGAGGGCGTTCAGCGGCACCTTCATGGTGAACGGGGCGTACGACCGGGAGGAAGGGGACAAG
GCCGTCGCCGATGGCTACGCCGATCTTGTGGCGTACGGGCGGCTCTTCCTGGCCAACCCCGACTTGCCGGAGAGGTTCAA
AAGGAACGCCGCTCTGAATAAGTATGACAGGAGCACGTTCTACACATCCGACCCTGTTGTTGGCTACACCGATTACCCTT
TTCTTGATCAGGAGGATTAGCTAA--------------------------------------------------------
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-----------------------------------------------------CTGGTTGGTTC----------------
------------------ACGGTCGTCGTGCTTGGGACTTGGGAGCTTCTACCATCATCGTTGATTAAGAAGTAACTCCA
AGGCTCACGCTCGACCTTGCATAGCACACAAAATCAGGCTG------GGGGAATGTTTTTATGTGGTGTTAGCTCCAGAT
TGTATTATGGCAAGGCATCT---GCAGATCCCTTAGAATTCGTATTTAAGGAGCAAAAAATGATGTTGA-----------
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----------------------------------------------------------GCCAACTTGAAGATACCCTATA
CCCAAAAGGCCAAAACTTAACTAAATTTGAGTTTTTTACCC-CAAAAACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCATAGGTTTTTTCGATAAAAGGACGCTTTATTACTTAAAAGGTG-AAGTATTACACCCGGCCTC
TGCACAACTGAGATGCACACAGCCA-AACCAAGTCCAAGTTTCAAATAAA------------------------------
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-----------------------------------------------
>chr4B_1_TraesCS4B01G356100
CTACACTCCACCGCTGGCAGCGACATGCTTGTGGGTGTCGCTTCCCTCTTGAAGGCGTCGTTGTGGGTCCCCTAAAGGTG
CCATGTCCGAGTGAAAACCCTAGTCCTTCTTTTCAGACTCGACGGTGGCGCGTGGCGTCATGACCCTCTTGGAGACGTCA
TCATGGAGCTCCGGTCCCTTTTGGTTGCACTAGGCCAGCGGCTTCAGGCATGCCTTGATCCTTACATGAGGCATCCGTGA
C--TGGCATGGGGTGGCCTCGATGGTCTCCTATCCTATACATGTTCCTCCGTTTTCACCGTGGTCCTAGCAGCGCTCCAT
GGCCCGGAGCGAGAGGGAGGCGGCCCTCTCAAGAGATGGCTTGGTGTGTTCGATACAACGGTGTCCGGTGGCCTCTCAAG
GGGGGCATGGTTCCGTCCTAGTAGTCTGGGTTGGTTCTGTTAGGTGTGGCGTCTCCTGTACTTGTGCTCGGCATTAAGTT
GATACTAGCTTTTATGCTACTCGCTTGGATGCTGTTTTTCTTTGACCTCAAGTGTCTTAAGGATTTCCTCACTACTCGCA
TGGCGATGTCACTTTGTGATCACAAA------------------------------------------------------
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-----------------------------------------------GTGACATGAGTTGCAGATATCATTGGCAAGTAG
CTGATCC-----TTACCTCGGGGGTGGGCCGTTGGCATCA---CGCCAGCTGTTGATAGATGCTTTTCTTTTGGTGCAAT
CGCTGTACATATGAGTTCC-GTTGCCTTGCTTTGATTGGTCGAAATTTACGCAGTCGTACAGGCACAGGCACGCACGAAA
GCAACCATAAT----AAAACAACAAAGTTAAAACAAACCTACACAATTACACAGCCAGAAAGGTCAATCACGTGCATTAT
CACTAGTCCACTTAATTAACTTAATTTGACGCAATAGAAGCTCGACAACACGGGGCTGAAGGTGGACTACTCCGGGACTG
GACGTGGAATTTCGGGACTACTCCGTCTCCTCTCATCGGCTATATAGTCCATCGAGCAACCGCGAGCTCGATCGCCACTA
CTCTTACTGACATAGATAGAAGAAGGCCGTGGTGCTGAAAAATCCACTTCCATTGAAGGAAGCATGGAGACGAA---GAC
GACTCCGCTCCTGACTCCATACAAGATGGGCGACTTCAACCTGGCGCACAGGTCAGTTAATTACTCGATCGTTTCCTTAG
AATCTTGGGTCGCTGAAGTGACGCGGCCATGGTCGGCAACGCAACGCAGGGTTGTTCTCGCGCCGCTGACGCGGTGCAGG
TCGTACGGGAACCTCGCCCAGCCGCACAACGCGCTGTACTACGCGCAGAGGGCGGCGCCGGGCGTGCTCCTCGTCGCCGA
GGCCTGCGCCGTCTCCGAGGCCGCGCGGGGCTACCCGCACGTCCCCGGCCTGTGGAGCCAGGAGCAGGTGGAGGCGTGGA
AGCCGGTGGTCGACGCCGTGCACGGCAAGGGCGCCGTCTTCTTCTGCCAGCTATGGCACACGGGCCGCGTTTCGCCCACC
GGTAGAACATTATCCTCGTACCTT--TTT-CTTTTCAAATGATTATCCTCGTACCTATCGTGTTCG-------TTTTCGA
ATGGACGAATCAAAGTGTCAAGTCTCAATCATGTTGCACACAGAGTTCCAGCCTAATGGGCAAGCTCCGGTGTCGAGCAC
GGATAAGCAGGTGCCGCCTCAGGTCGCCCA--TGACGGCAGTGTCCTGGAGTTCGCGCCCCCTCGAAGGTTGGCGACGGA
GGAGATACCCCACATCGTCAACGACTTCCGGGTCGCCGCTAGGAACGCCATGCGAGCCGGTAATTAATGATCAACCATCC
ATGTCCCCAACAGTCCTCATCTTTTCTACGTACGTACGTAGTTTGCAACGCTGATCATCGTCGGTGATCGAAGGGTTCGA
CGGCGTGGAGATCCACGCCGGCAACGGGTACCTGATCGACCAGTTCATGAAGGACGGCGTCAACGACCGGACCGACGAGT
ACGGCGGCGGCCTAGAGAACCGCTGCCGCTTCGCCGCGGAGGTCATCGCGGCCGTGTGCCACGAGGCCGGCGCGGGCCGC
GTTGGCGTGCGCCTCTCCCCGTTCGCCGACTACGTCGACTGCGTGGACTCCGACCCGGAGGCGCTCGCGCTGCACGTGAT
CGGCGTCATGAACGGGCTCGGCGTCCTCTACTGCCACATGATCGAGCCGCGGATGTGCGTCAACGAGCGGATGATCCCGC
GCCGCCTGCTGCCGTTCAGGAGGGCGTTCAGCGGCACCTTCATGGTGAACGGGGCGTACGACCGGGAGGAAGGGGACAAG
GCCGTCGCCGATGGCTACGCCGATCTTGTGGCGTACGGGCGGCTCTTCCTGGCCAACCCCGACTTGCCGGAGAGGTTCAA
AAGGAACGCCGCTCTGAATAAGTATGACAGGAGCACGTTCTACACATCCGACCCTGTTGTTGGCTACACCGATTACCCTT
TTCTTGATCAGGAGGATTAGCTAA--------------------------------------------------------
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-----------------------------------------------------CTGGTTGGTTC----------------
------------------ACGGTCGTCGTGCTTGGGACTTGGGAGCTTCTACCATCATCGTTGATTAAGAAGTAACTCCA
AGGCTCACGCTCGACCTTGCATAGCACACAAAATCAGGCTG------GGGGAATGTTTTTATGTGGTGTTAGCTCCAGAT
TGTATTATGGCAAGGCATCT---GCAGATCCCTTAGAATTCGTATTTAAGGAGCAAAAAATGATGTTGA-----------
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----------------------------------------------------------GCCAACTTGAAGATACCCTATA
CCCAAAAGGCCAAAACTTAACTAAATTTGAGTTTTTTACCC-CAAAAACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCATAGGTTTTTTCGATAAAAGGACGCTTTATTACTTAAAAGGTG-AAGTATTACACCCGGCCTC
TGCACAACTGAGATGCACACAGCCA-AACCAAGTCCAAGTTTCAAATAAAATAAAAGGTGGAATAC-------CATGACT
ATATAACGCCTAAGATGTAAGAGGGCCATTCCGAAGATCATGCTGCCATCCATTTCAGGTTAAGGTATCCCTCGCCATGG
CCTCCAAGCGTGTACACATCTCTGTAAACATGTCTCGATTCTCCACATGTTGTAGAGCCGACCATAAACGGAGTATACCG
GTACATCTATAGATAGCCTACAGAAGAGAAGAACTTTTATCTCTCTTGTATTTGGTTCGCGGCCATGCGAGTGAGTAAAA
CTCCCGC-CCACC------------------------CCACCACCTACCACCGCCGCTACAATAGCCTCTTCCGGCCAAC
CCTTCCCTGTTGATGGGCGGAATGGGTAGGCCCTCC-CCCCACTGCACCCCTAGCGCCAATACTGGAGACCCACCATCGG
CCATGAATTTTATGGCGCAACCACTAGAAAGACGACGGCAAGGAAGGAACCTCATCGGCAGCAGAGTGTCGACGTCTTTC
GTCGGTAGTTCCTTCAGAGTGACCACAATAACTACCTTTGTCGAGCATACCGGCAAAAGGGGTCTTTCGGTGAAGGCCAA
GGCAGCGGCCAACATGGCAGCGCTAGGGAAGAAAAAGAAGATTATTGTGGCGAACGGGTCGCTTCCCCCTCAACGTGTTG
CGGCTGCAGCGAGGTCTACTTGATTACTTCCTTTGGTGATCCGGAAATTAAA-AAAAAGGATTATCGCCTTTC-CCCGCG
AGGTAACCCTGAGTTATTGAACCCATGA-AGGACTGTGCCCTTTAAGCTAGGGTCTCAAAAAAGTTTTTGCTAAAGAATT
AATTTCAACTTTTGACCGGATCTTAAATCGAACTTGACACTAAAAACACTTATAATAAAACACATGCATGGTATGTGG-T
CTTAATTTTTACAACCGTATATTTATAACTGGATCAAACATGACCTTAATTTGTGCGTAAAAAGTTGGAAGTCACCTATT
AAGATGTGCTTGTTATGAATCGAAGTGGGGGATGTGTCCAAATTACA
>chr4D_1
CTACACTCCGGCGCTGGCAATGT--TGCTTGTGGGTATTGCTTCCCTCTTGGAGGCGTCGTTGCGGGTCCCCTAACGGTG
CCATGTCTGAGTGAAAACCCTAGTCCTTCTTTTCAGACTTGATGGTGGCGCGTGGCGTCGTGACCCTCTGGGAGACGTCG
-CATGGAGCTCCGATCCCTTTTGGTTGCACTAGGCCAGCGGCTTTGGGCATGCCTTGATCCTTACATGTGGCATCCTTGA
CACTGGCATGGGGTGGCCTCGATGGTCTCCTATCCTATACATGTTCCCGCGTTGTCACCGTGGTTCTAGCAGCACTCCAT
GGCCCGGAGTGAGAGGGCA------------------GGCTTGGTGTGTTCGATGCAACGGTGTCCAGTGGCCTCTCAA-
GGGGGCATGGTTCCGTCCTAGTAGTCTAGGTTGGTTCTGTTAGGTGTGGCGTCTCCTGTATTCGTGCTCGGCATTAAGTT
AA---TAGCTTTTGTGCTACTCGCTTGGATGCTGTTTTTCTTTGACCTGAAGTGT-TTAAGGATTTCCTCGCTACTCACT
GGGCGATGTCACTTTGTCAAAAGTGACATGAGCAAAAAAGTTTTTTTACAGGAGCCGGGAGCTACCGGTGAAGCATCCAT
CGTTGATTCTGGCATTCAGATGTGTGCAGGCAGTCGAAAAGATTCGTTTGTGCAATGCATTTCTATATACAACTGACACC
TTCTGACAAATACCTGACCACGCCCCCACTACTTGTATATCAAGTACTGCATGCACACGTACAGTCCTCTTCACCCATAG
AGAAAATAGCATTTATTTTCTTGTGAGATATTAATTCACCAATATCTCTTAAAAAATCTGGTTATTTCATATTTTTTATA
TATTTGATTTCTTGACAATGAGATCTTTAAAACAAGACTAATCTTGAACATATTTCAAACGAGTTTAAAAAAACCAATTT
TACTCATTAAAAAAATGATTTCACTCATTTCAATGAACAAAGTTTACTCATTCCAAACAAATTATTGCACTAATTTGAAA
ATACAGATTCACTAATTTACATAATGATTTCACTCTTTTGAAATACTAAGTTTCAGTCTTTTGTAAAATATGATAGTGAA
ATATGTTTTTGAAAGGATTTAAATCTTCTTTTTGAAGTATTGAAATCAGTTGTTTGATAGTTGAAATAACCAGTTCACTC
ATTGTGAAATATGAAATTGAAATAGGAATGACTGAAACGACATTGCAAAAAAATAAAATTAATTTTGCCACTCTTTTGAA
ATACTAAGTTTCAGTACTATTTTTTAAAATATGGTAGTGTATGTTTTTTATGGGATTGAAATATTCTTTTTTGAAGAATT
GAAATCAGTTATTTGAGAGTTGAAATAATCAGTTTCAATCATTGTAAAATATGAATTTGGAATTGGAATAATTGAAATGA
TATTGCAAAAAAAATAAAATTATTTATGCCACTCTTTTGAAATACTAAGTTTCAGTATTTTGTAAAATATGGTAGTGTAT
GTTTTTTATTGGATTGAAATATTCTTTTTTGAAGAATTGAAATCAGTTATTTGAGAGTTGAAATAATCAGTTTCAATCAT
TGTAAAATATGAATTTGGAATTGGAATAATTGAAATGATATTGCAAAAAAATAAAATTATTTATGCCACTCTTTTGAAAT
ACTAAGTTTCAGTATTTTGTAAAATATGGTAGTGTATGTTTTTTATTGGATTGAAATCTTCTTTTTTGAAGATCGAAATC
AGTTCTTTGAGTGTTGAATAATCAGTTTCAATCATTGTGAAATATGAAATTGGAATATGGCCTTTAAAAGACTTGAAATC
GGCTTCGAAAATTGAGTGAAGTTATTATTTAGAAACAAGTGTAATTATTTTTTGAAATAATTGAAATAGAGTTTTTGAAA
GAACTGAAATCTATTTTAACTAGTTTTTTTAACGATTGACTTGTGTTTTTTGAAAGATTGAAATCTGTTGTTTGAAGCGA
GTGAAACGAGTTTTTGAAATAATTCAAATCTATTTCTTGAAAGAGTTGAAATCGGTGAGATATGTATTGAAATAACTATG
TGTAGTTGAGTTGTACAAAATATGTGAAACTGATATTTCGATGGGTTGTTGCAAGTTGTGAAACTAATTTCTGAGAAAAT
AATGAAATTACTTCTCTGAAATATATGTAACTGCTATTGGGAAAAAATTAATCGAAACTTGTAAGTTAACTTATTTGAAA
TGCGTTATGTGACTACTTTCAAATAATCAGTTTCACTCTTTTCTGCTTATTACACATACTTAAAAGTAAAATAATCCATT
TCAAATATATTGAAGAGTGAAATTTCAATTTAAAAGAATTCAAATAAGTGTTTTGAAAAAGTGAAATACGTGGTTATGCT
GCCGGGACATGCACGTGATGTGGCGTCTTGGATATGCATGTGGTGGGGCATCCTAGGTGGTGGGACCTAGCTTAGGGAAT
ACAGAGTAGGAATCCTGCCGAAAGGGGGGAATTCAACTCCCGTATATAAATGACTTGATGTGGTGTCTTGCTCTTATTGG
CTAGGGGTTCACCGGTAGATCCCGGCACCGGTAAAAACAGGTTTGCGGTGACATGAGTTGCAGATATCATCGGCAAGTAG
CTGATCCTTACCTTACCTTGGGGGTGGGCCGTTCGCATCAACACGCCAACTGTTGATAGATGCTTTTCTTTTGGTGCAAT
CGCTGTACATATGAGTT-C-GTCGCCTTGCTTTGATTGGTCGAAATTTACGCAGTCG------CACAGGCACGCACGAAA
GCAGCCATATGCATGAC-ACAACAAAGTTAAAACAAACCTAGACAATTACACAGCCAGAAAGGTCAATCACGTGCATTAC
CACTAGTCCAC----TTAACTTAATTTGACGCAATAGAAGCTCGACAACACGGGGCTGAAGGTGGACTACTCCGGGACTG
GACGTGGATTTTCGGGACTACTCCGTCTCCTCTCATCGGATATATAGTCCATCGAGCAACCGCGAGCTCG----CCACTA
CTCTTACTGACGTCGGTAGAAGAAGGCCGTGGTGCTGAAAAATCCACTTCCCTTGAAGGAAGCATGGAGACGAAGACGAC
TACTCCGCTCCTGACTCCGTACAAGATGGGCGATTTCAACCTGGCGCATAGGTCAGTTGATTACTATAGCTAGCTCGTAA
CCCGTTTCCTT-----AGTGACGCCGCCATGGTCGACAACGCAACGCAGGGTTGTTCTCGCGCCGCTGACGCGGTGCAGG
TCGTACGGGAACATCGCCCAGCCGCACAACGCGCTGTACTACGCGCAGAGGGCGGCGCCGGGCGTCCTCCTCATCGCCGA
GGCCTGCGCCGTGTCCGAGGCCGCGCGGGGCTACCCGCACGTGCCCGGCCTGTGGAGCCAGGAGCAGGTGGAGGCGTGGA
GGCCGGTGGTCGACGCTGTGCACGCCAAGGGCGCCGTCTTCTTCTGCCAGCTATGGCACACGGGCCGCGTCTCGCCCACC
GGTACAACATTATCCTCGTACCTT--TTTTCTTTTCAAAGGATTATCCTCGTACCTATCGTGTTCG-------TTTTCGA
ATGGATGAATCGAAGTGTCAAGTCTCAATCATGGCGCATACAGAGTTCCAGCCTAATGGGCAAGCTCCGGTGTCGAGCAC
GGATAAGCAAGTGCCGCCTGAGGTCGCCCA--TGACGGTAGTGTCCTGGAGTTCGCGCCCCCTCGAAGATTGGAGACGGA
GGAGATACCCCACATCGTCAACGACTTCCGGGTCGCCGCTAGGAACGCCATGAGAGCCGGTAATTAATGATCAACCATGC
ATGTGCCCCACAGTCCTCATCTTTGCTACGTAC----GTAGTTTGCAACGCTGATCATCATCGGTGATCGAAGGGTTCGA
CGGCGTGGAGATCCACGCCGGCAACGGGTACCTGATCGACCAGTTCATGAAGGACGGCGTCAACGACCGGACCGACGAGT
ACGGCGGCGGCCTGGACAACCGCTGCCGCTTCGCCGCCGAGGTGATCGCGGCCGTGTGCCACGAGGCCGGCGCGGGCCGC
GTGGGCGTGCGCCTCTCCCCGTTCGCCGACTACGTCGACTGCGTGGACTCCGACCCGGAGGCGCTCGCGCTGCACGTGAT
GGGCGTCATGAACGGGCTCGGTGTCCTCTACTGCCACATGATCGAGCCGCGGATGTGCGTCAACGAGTGGATGATCCCGC
GGCGCCTGCTGCCGTTCAGGAAGGCGTTCAAGGGCACCTTCATGGTGAACGGCGGGTACGACCGGGAGGAAGGGGACAAG
GCCGTCGCCGAAGGCTACGCTGATCTTGTGGCGTACGGGCGGCTCTTCCTGGCCAACCCCGACCTGCCAGAGAGGTTCAG
GAGGAACGCGGTTCTGAATAAGTATGACAGGAGCACGTTCTACACATCTGATCCTGTTGTTGGGTACACCGATTACCCTT
TTCTTGAAACGGAGGATTAGCTAAGGGCATGAACAGTGATTGATAAGACATTCTTATCTTAATCCTTTCATGCAATTTAG
AGATGACAATAAAACCATGTCTACGATAGAGTATGTCTTAGTCTTATCTTAAATAACTAGTTATTTGTAATAT-ATAGTG
AGACATATTGTGCTAGGAGATCATCTCTTAAATAAGAGAAAACGAGTCTTTTCTTGTGATTTCTTTCTTCTCCACCTCAA
CATTTATCCTATGTAACAATTT----------------------------------------------------------
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-------------------------TAACATAGCACCATTGTACATATCCTAACTGGTTGGTTC----------------
------------------ACTCTTGTCGTGCTTGGGATTTGGGAGCTTCTGCCATCATCGTTGATTGAGAAGTAACTC-A
AGGCTCACGCTCGACCTTGCATAGCACACAAAATCAGGCTAGA------GGAATGTTTTTATGTGGTGTTAGCTCAGGAT
TGTATTATGGTAGGGCATCT------------------------------------------------------------
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>chr5A_689
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-------------------------------------------------------------------------------T
CGCTGTACATATGAGTT-CTGTTGCCTTGCTTTGATTGGTCGAAATTTACGCAGTCG------CACAGGCATGCACAAAA
GCAGCCATAAT----AC-ACAACAAAGTTAAAACAAACCTAGACAATTACACAGCCAGAAAGGTCAATCACGTGCATTAC
CACTAGTCCAC----TTAACTTAATTTGACGCAATAGAAGCTCGACAACACGGGGCTGAAGGTGGACTACTCCGGGACTG
GACGTGGATTTTCGGGACTACTCCGTCTCCTCTCATCGGATATATAGCCCATCGAGCAACCGCGAGCTCG----CCACTA
CTCTTACTGACGTAGGTAGAAGAAGGCCGTGGTGCTGAAAAATCCACTTCCCTTGAAGGAAGCATGGAGAAGAAGACGAC
GACTCCGCTCCTGACTCAATACAAGATGGGCGATTTCAACCTGTCGCACATGTCAGTTGATTACTATAGCTAGCTAGTAA
CCCGTTT-------------------------------------------------------------------------
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---------------------------------------------------------------CTGCCGGAGAGGTTCAG
GAGGAACGTGGCTCTGAATAAGTATGACAGGCGCACGTTCTACACCTCTGATCCAGTTGTTGGCTACACCGATTACCCTT
TTCTTGATCTAGAGGATTAGCTAAGGGCATGAACAGTGGTTGATATGACATTCTTATCTTAATAATTTCATGCAATTTAG
AGATGACAATAAAAACATGTCTACAATGA--TATCTTTTAGGCTTATTTTAAATAACTAGTTATTCCTAAAAACATAGTG
AGACATATTATGCTAATAGATCATCTCTTAAATATGGGAAGACAAGTCTTTTCTTGTGATTTCTCTCT-CTCCGCCTTAA
CATTTACCCTATGTAACACTCTAAGTGCATTAAATAGTTTATCAATTATAGTCTCCAATGCATAGGTTTTTAACTTGTTG
TAGCTAAGCTTCATTCATTTAACGATTTAGCTACTAAACTCTTTCGTGCATTGATGAGCTTGCATCATTTAAATATTTTG
CCTAGGTTCGCTCGCTTGTCATTGGTTCTTCCTGGATCACCAAACACATCTTTCTCCTCTTAATTGTCTTAGCATCTATA
CAAAGTGAAGCATTGGGAAGGGCCCTAAGATAGCACCATTTTACATGCCCTAACT------TTC----------------
------------------ACTCTTGTCGTTCTTGGGACTTGGGAGCTTCTACCATTATCATTGATTGAAAAGTAACTC-A
AGGCTAACGCTCGACCTTGGATAGCACACAAAATCAGGCTAGG------GGGATGTTTT-ATGCGGTGTTAGCTCTAGAT
TGTATTATGGTAGGGCATCTCTAGCAGTCCCCTCAGAATTCGTATTTAAGGAGCAAAAATGATTTGTGAAC---------
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--------------------------------------------------AAAAAATTGCCAACTTGCAGATACCTTATA
CCCAAAAGGCCAAAACTTAATTAAATTCGAGTTTTTGACCCCCTAAAACTTGCCCCCTATTTCTCTTAT-----------
----------------------TTTTTTTGATAAAGTGT-GCTTTATTACTTAAAAGGTTTAAGCATTACACCCAGCCCT
GCATAACT--AGATGCACATAGCCATAACCAAATCCAAGTTCCAAATAACATAAAAGGCAGAATACAAGTAATCATGACT
ATATAATGCCTAAGATGTAGGAGGCCCAATCCGAAGATCATGCTGCCATCCATTTCGGGTTAAAGTATCCCTCGCCATGG
CCTCCAAGCGTGCACACACCTTCGTAAACAGGTCTCGATTCTCCACATGTAGTAGAGCCGACCATAAATGGAGTATAGTA
GTACATCTGTAGATAACCTACAAAAGAGAAGAACTTTTATCTCTCTTATATTTGGTTCGCGGCCATGCGAGTGAGTAAAA
CTCACACACCCCCTCCGGCCCACCCCACCGCTTCCCGCCATCACCTACTGCCACTGCTGTCATAGCCTATGTCGGTCGAC
CCTTCCCTGTTGATGGGC-GAATGGGTAGGCCCTTC-CCCG-CTGCACCCCTAGCGCCAGTGCCGGAGACCCACCATCGG
CCATGAATTTTGTGGCACAACCACTAGAAAGACGACGGCAAGGAAGGAACCTCGGCGGCAACAGAACGTCGACGTCTTCC
GTTGGTAGTTCCTTCAGAGTGACCACAGTACCCACCTTGGCAAAGCAGACCGGAAAAAGGGACCAT--------------
-----CGGCCAACATGGCAGCGCTGGCGAAGGAAAAGAAGATTATTGCGGCCAACGGGATGCTTCACC---AACGTGTTG
CGGCTGCGCGG-GGACTACTTGATTACTTCCTTTGGTGATCTAGATATTAAACAAAAAGGATTATCGCCTTTTTCCCCAG
AGGTGACCCTGAGTTATCAAACCCACATGATGAATGTGGCCTTTAAGCTAGAGTCTCAAAGAAGTTTTTGCTAAAGAATT
AATTTCAGCTTTTGACCGGGTCATAAATCGAACTTGACATTGAAAACACTTATAATAAAACACATGCATGGTATGAGG-T
CTTAATTCTTACGACCATATATTTATGACGGGATCAAATATGATCTTAATTTGTGTGA-------TGGAAGTCGCATATC
AAGATGTGCTTGTTATGAATTGAAGTGGGAGATGTGTCCAAATTACA
>chr5A_1180
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------------------TGACGCGGCCATGA---ACAACACATCGCAGGGTTGTCCTTGCTCCACTGTCGCGGTGTAGG
TCGTACGGGAACCTCGCCCAGCCGCACAACGCGGTGTACTACGCGCAGAGGGCTGCGCCGGGCGCCCTCCTCGTCGCCGA
GGCCTGCGCCGTGTCCGAGGCCGCGCGGGGCTACCCGCACGTCCCCGGCCTGTGGAGCCCGGAGCAGGTGGAGGCGTGGA
AGCCGGTGGTCGACGCCGTACACGCCAAGGGCGCCGTCTTCTTCTGCCAGATATGGCACACGGGCCGCGTCTCGCCCACC
GGTAGAACATTATCCTCGTACC-T--TTTTCTTTTCAAAGGATTATTCTCGTACCTATCGTGTTCG-------TTTTCGA
ATGGATGAATCAAAGTGTCAAGTCTCAATCATGTTGCATACAGAGTTCCAGCCTAATGGGCAAGCTCCGGTGTCGAGCAC
GGATAAGCAGGTGACGCCTGAGGTCTTCCA--TGACGGTAGTGTCCTGGAGTTCGCGGCCCCTCGAAGGCTGGAGACGGA
GGAGATACCCCACATCGTCAACGACTTCCGGATCGCCGCTAGGAACGCCATGAGAGCTGGTAATGAATGATCAACCATGC
ATGTCC-------TCCTCATCTTTGCTATGTAC----GTAGTCTGCGGCGCTGATCATCATCGGTGGTCGAAGGGTTCGA
CGGCGTGGAGATCCACGCGGGCAACGGTTACCTGATCGACCAGTTCATGAAGGACGGCGTCAACGACCGGACTGACGCCT
ACGGCGGCGGCCTGGACAACCGCTGCCGCTTCGCCGCGGAGGTGATCGCGGCCGTGTGCCACGAGGCCGGCGCGGGCCGC
GTCGGCGTGCGCCTCTCCCCGTTCGCCGACTACGTCGACTGCGTGGACTCCGATCCGGAGGCGCTCGGGCTGCACGTGAT
CGGCGTCATGAACGGGCTCGGCGTCCTCTACTGCCACATGATCGAGCCGCGGATGTGCGTCAACGAGCGGATGATCCCGC
GCCGCCTGCTGCCGTTCAGGAGGGCGTTCAGGGGGACCTTCATGGTGAACGGCGGGTACGACCGGGAGGAAGGGGACAAG
GCCGTCGTCGAAGGCTACGCTGATCTTGTGGCGTACGGGCGGCTCTTCCTGGCCAGCCCCGACCTGCCGGAGAGGTTCGG
GAGGAACGCAGTTCTGAATAAGTATGACAGGAGCACGTTCTACACCTCTGATCCTGTTGTTGGCTACACCGACTACCCTT
TTCTTGATCCGGAGGATTAGCTAACGTAG---------------------------------------------------
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-------------------------------------------------CTAACTGGTTGGTTCACTGTTGTCGTGCTTT
TTTTTTGTTGAACTTATTACTGTTGTCGTGCTTGGGACTTGGGAG-TTCTACCATCATCGTTGATTAAGAAGTAACTC-A
AAGCTCACGCTGGACCTTGCATAGCACACAAAATCAGGCTAGGAGATGGGGAATATTTTTTATGGGCCGCTGCTACGAAT
CATGATTTCCTAAAGAAATCAGAAATCATCCGGCTAGTCAACCGACAGATCTGTGCATAGTTGACCGTCCGATCGCAGCA
ATGCCACCTAGCAGTAAAAGCGTGCAACAATTTCAATGCAGCACCAATGAAAACCCGGCCAAGCTCCAATGCAGCTCTCA
TGGCGGACCACACGACATGATAAAAGCTGCAACGCAGCACCGCCGGCGTCCGGCGAAGTTCCATTGCAGCATCGACTATG
CTTCCGGCGGCCCGGCGAAGTTCCATTGCAGCGTCGACTATGCTTACACAAAAAAAGTGCCAACTTGCAGATACCTTATA
-CCAAAAGGCCAAAACTTAACTAAATTTGAGTTTTTGACCCTTAAAACTT------------------------------
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>chr5A_1199
AACGCAT-------------------------------------------------------------------------
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---------------------------------------------GCAGGGTTGTTCACGCGTCGCTGATGTCGTGCAGG
TCGTATGGGATCCTCGCCCAGCCGCACAACGCGGTGTACTATGAGCAGAGGGCGGTGACGGGCGTCATCATCGTCACGGA
GGCCTGCGCGGTGTCAGAGGCCGTTGAGGGCTACCTGCACATGCCCGGCATGTGGAGCCAGGAGTAGGTGGAGGCGTGGA
TGCCAGTGGTCGACGCGGTGCACGGCAAGGTCGACGTCTTCTTCTGCTAGATATGGCACACAAGCCGTGTCTCGCCCACA
GGTAGAACATTATCCTCGTACC-TTTTTTTCCTTTGAATAGATTATCCTTGTAAATATGGTGTTTTTTTTCATTTGTCGA
GTGGATGGATGAAAGTGCTACGTCTCGATCATGTCAT----AGAGTTCCAGCCTAATGGGCAAGCTCCGATGTCGAGCAC
GGACAAGCAAGTGACACCACAAGTCGCCCATATGATGGCAGTGTCCTGGAGTTTGCGGCCCCTCATAGGTTGG-------
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>chr4D_2842
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---------------------------------------------------------------------------GCCTC
TACATAACTAAGATGCACACAGCCATAACCAAGTTAT-GTTCCAAATAAAATAAAAGGCGAAATACAAGTAATCATGACT
GTAGAATGCCTAATACGTAGGAGGGCCAATCCAAAGATCATGTTGCCATCCATTTCGGGTAAAAGTATCCCTCGCCGTGG
CCTCCAAGCGTGTAAACACCTCCTTAAACAGGTCTCGATTCTCCACACGTTGTAGAAACAACCATAAACAGAGTGTACCG
GTACATCTATAGATAACCTGCAGAAGAGAAGAACTTTTATCTCTCTTATATTTGGTG-------------GTGAGTAAAA
CTCCCAC-CCCCCTCCCGCCTACCCCACTGCTTCCCTCCACCACCCGTCGCCACCATTGCAATAGCCTCTGTTGGCCGGC
CCTTCCCTATTGATGGGCGGAATGGGTAGGCCCTCCGCCCG-CTGCACCCCTAGCGCCAATGTCGGAGACCCACTGGCGG
CCATGAATTTGGTGGCGCGGCCACTAGAAAGACGACGGCAAGGAAGGAACCTCATCGGCAGCAGAGAGTTGACGGCTTTC
GTCGGTAGTTCTCCG-GAGTGACCACAATATCTACCTTGGCCAAGCCGACCGGCATAAGGGACCGTCGGATGAAGGCCAA
GGTGGCGGCCAACATGGCGGCGCTGGCGATGGAAAATAAGAATATTGCGACCAACAGGTCGCATCCCCCTCAATGTGATG
CGACTCCGGCAAGGACTACTTGATTACTTGCTTTGGTGATCCGGAAATGAAACAGAAAGGATTCTCACCTTTTTTCCAAG
AGCTGACCCTGAGTTATCGAACCCACGGGAGGACGGTGTCCTTTAAGCTTGGGTCTCAAACAAGTTTTCGCTTAAGAATT
AATTTCAGCATTTGACTCGATTGTAAATCGAACTTGACACTGAAAACACTTATAATAAAACACATGCATGGGAACGAGAT
CTTAATTCTTACAACCATATATTTGTAACGGGACCAAATATGATCTTAATATGTGCGC-------TGGAAGTCACCCATC
GAGATGTGCTTGTTACGAATCAAAGTGGGGGATGTGCCCAAATTACA
>SNPs
---------SS--------SS-SSS-----------S-S------------S-----------S-----------S----
-------S-------------------------------S--S----------------S---------S---------S
S------------S------------------------------SS----------------------S-------S---
-----------------------------------------------SS----S----------S--------S------
---------S-------SSSSSSSSSSSSSSSSSSSS-----------------S-----------S------------S
---------------------------S--------------------------------S-S-----------------
S-SSS--------S----------------------------------S------S--------------S------S-S
S----------------S-SS-SSS-------------------------------------------------------
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----------------------------------------------------------------------S---------
------------------S--------------S--------------S-------------------------------
-----------------S---------------------------------------SSSSSS-----------------
---S------------SS-----------------------S-------------------------------------S
-----------SSSS-----------------------------------------------------------------
--------S------------------------------S------------------------------SSSS------
-----------S---S-----------------------------------S----------------------------
---------------------------------S------------------------S------SS-S-SSSSS-S--S
SSSS--SSS-SSSSSS-------------------S--------------------------------------------
-----------------------------------------------------------------S--------------
------------S-------------------------------------------------------------------
----------------------------------------------------------------------S---------
---------------------------------------S----------------------------------------
-----S--------------------------------S-----------------------------------------
-------------------------------------------------------------------------S------
----------------------------------------------------S-------------------------S-
--------S---------------S--------SSSS----------------------S--------------------
--------------------------------------------------------------------------------
-------------S--S--------------------------S------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S--------------------S-S-------------------------
-----------S--------S------------------------------------------S---------------S
S--------S--------------------------------------S--S----------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S--S------------------------------------------------------S-
----------------------------------------S---------------------------------------
----------S----------------------S-------------------------S-SS-SS--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S-------S----
------------------------------------S--------------S-S-S--S-S-----SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS------S------SS-SS-------------------S----S---------S-----
-S--S----S-------------------------------S----------------S---------------------
------S------------S--------S---------------------------S------S----------------
------------------S---S-------S-------------------------------------------------
---------------S-------------------------------S--------------------------------
-----S----S--------------------------------------S--S-----S-----------SS-----S--
----------------------------------------SS-------------------S-S----------------
-----------S------------------------------------------------------S-------------
------------------------------S-------S-S-S----S-------------SS-S-SS-S----------
--SS--------------------S-S----S---------------S---S----------------------------
-------S------S---------------------------------------------------------S----SS-
----S------------S-------S-S----------S---------------------S-------------------
-------S--------------S------------------S---------------------------------S----
-------S--------S------------S--------S----S-------------SSSSSSSS--------------S
-----------------------------------------------
>forward_160
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------------------------------------------------------------TGACCCTCTTGGAGACGTCA
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>reverse_3203
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--TCTTGGGTCGCTGAAGTGAC----------------------------------------------------------
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>forward_463
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-------------------------------------------GTGTGGCGTCTCCTGTACTT-----------------
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>reverse_3839
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------------------------------------------------------------------------------CC
ATGTCCCCAACAGTCCTC--------------------------------------------------------------
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>forward_3179
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----------------------------------------CTGGCGCACAGGTCAGTTA---------------------
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>reverse_5675
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--------------------------------------------------------------------------GGCCTC
TGCACAACTGAGAT------------------------------------------------------------------
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>forward_4400
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------------------------------------------------------------GACTTGCCGGAGAGGTTCAA
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>reverse_6303
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--------------------------------------------------------------TCTTTCGGTGAAGGCCAA
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------
