>input_sequence_41517
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--------------------------------------------------------------------------ATGGAG
CCGGGCGGGCCGTGGCGCGATCCGCGCCAGGGGTACATGTACGGGCTCGGATCGCCGATGCAGATGCCGGCGCAGCAGCG
CTCCGACCCGGCCGCCGCTGGCGGGGTTCTCAAGCGGAGCCTCGGCGAGCTGGAGAGGTGGCAGCATCAGCGCCAGTTCG
CCATGCAGCAGGAGCTCTACATGCGCGCCGTCAGGCAGCGCACGGCCGCCACGTCGCCGGCCGTCTCCCCGCTCACCTCG
GCGGACATCGCCGCCGTGCTCGGCGGGGTACCGGCTCAGCCCTTCTTCTCCGGGTCGAGCCTCGGCGGTGGCCTCGCGTC
GCCGTCGTCCACGCTGTCGTCCCTCACGACCGCGTCCAGGGCAGCCATGCCGCTGATTCAGCAGCATGTGCAACGGCAGG
CGCCGTTTCTGCCGTCCTCGGCGCACGCGCAGGCGCAGGCTCAGGCGCATGCTCTCGCGGTGGCGAGGGTGCCGGCTCCG
TCCGCGGCTGGGAGCGAGCTGTCCATCCTGCAGGACCTGGAGAAGCAGCTGCTCGGCGACGACGACGAGGCTGAGCCGGC
GATGAGCGGAACCGGTTCCACGGTGACCAGCTCCGAGTGGGAGGAGACCATCCAGCGGCTCAACTCCATCACGGCCGTGC
CGTCTCCTCCACTCTACGCGGAGGCGACTCCGAACAATAAGAACAACTACAGCGCGGCGATGACGGGGTCGCCGTCGAAC
TCGTCCACTTCCACGGCTTCTTCATCGGCTTCCTGCTCACCGCCAATCTCGGCCACCACGTCGCGTCAATTACTGTCCGA
AGCAGCGGCTGCCATAGCCGACGGCAACCTTAAAACGGCGGCCGCTAATCTTGCAACTCTCAAGCGCGCCGCTAACCCGC
GCGTTGACGCGGAACAGCGGCTGGTGGCCGTGATGGTGGCCGCCCTGTCTTCGCGCATTGCGCCCACTGCATCGGCATCG
TCCCAGCACCTCGCTGACCTCTGCGGCGCCGAGCACCATACCGGGTCCCAGATCCTCCACGACATCACGCCCTGCTTCCG
CCTCGCCCTCGACGCCGCTAACATCGCCATCGTCGAGGCCGTCGCCGGCCACCGCGTCATACATCTGGTGGACTTCGACA
TCAACGCCCCGCAGCACGCGGCTCTCATCCAGCGCCTCGCCGACCGGCGCGTGCCGGGGACATGCCTCCAGGTGACCGCC
GTAACCGATCCCACCTCACCGTTTACGCAGTCCCTGGCAGCGACGCTGCCCGGCGTCGGGGAGCGGCTCAAGAAGCTGGC
GGAGCGGGCCGGCATAGAGTACCACTTCAGAATGATCAGCTGCAGAGCGGCAGAGATTGAGGCATCCAAGCTGGGGTGCG
AGCCCGGGGAGGCGCTGGCCGTCAACCTGGCCTTCGCGCTCTCGCACGTGCCTGACGAGAGCGTCTCGCCGGCGAACCCC
CGCGACGAGCTTCTCCGCCGCGTGCGCGCCCTCGGCCCGCAGGTGGTGGCACTCGTGGAGCAGGAGCTGAACTCCAACAC
CGCCCCGCTGGCCACGCGCTTCTCGGACGCGTACTTGCACTACGGAGCCATTCTCGATGCACTGGACTCGACGGTCAGCC
GGGATAGCGCGGACAGGGCGCGGGCAGAGGAGGCGGTGGCAAACATGTCGGCCAGCGCGGTTGGCCGGGAGGGCGCCGAC
CGGCTGGAGCGGTGCGAGGTCTTCGGCAAATGGCGCGCGCGGTTCGGCATGGCCGGGTTCCGGCCGGTGGCGCTGGCCGC
GGGCATTGCCGACCAGGTCATGGCGCGCGCCGGCGCTCCCCCGCCAGGCCTCGTCGTGAATCAAGAGAACGGCGTGCTCC
GGCTCGGGTGGAAGCAGCGCGTGGTGACCGTGGCGTCCGCCTGGCGCTAA------------------------------
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>chr2A_1_TraesCS2A01G395400
CGGCCAGGATCGCCGGGCCGGCTCGTGTGGCCCGGCGACGCGCAACGTCGCCCGGGTCTACCTAAGCCGCGAAAGCGAGG
CCTCCCGTGCAGCGCACAGCCCTACCGCCACCAATCTGGACAACAATATAATTGTTTCCCACCGCTACCAGTTGTATAGC
TAGGAGT-------------ACACCAATCTGTTGATAAAATATTGATATCCCGCCATCTGTTCCTTCCCTTTCGCCGAAT
GGAAAGCGACTGCGACTTCTAGAAATCGCAATCGGGGCCCCACTGGCGGTGACCCGG-CGCGTGCATGCACAGGGACCCC
CCACCCTCCGATGCCCGGCCCCACCCGCAAACATCACCTGTTGTTGTTGTAGTACCAGTACTAGTAGTTCGAAATTCACG
CGCCTGTGGTGTGACTCGCAGGTGAGTGGC--------GTGCCGTG---GAGCTCCACGAAACCGCGGGCCGTCTCCGGG
GAAAACGAGGCGAAAACCAGGCGGTGGCGGCCACCACCGGCAGGCGTCGGTG-----------CCACA-----GCAAGGC
AGGTCCCCTCCCCCTCCCCCTCCCCCTCCCCCTTGGTCGTCTGGAGGAGACGGCGTCACCCGAGGCGGGATTGCGTGACG
CAGCGCGTATCCATCGCTTCACACCATTCACTCACCACG-------------CCCGCGCATTTATTTTAGCGCAAAGGCC
GCGCGGGCCCCGCCGTAACGCCCCCTCCCCACAGGTAAGTTCGAGGTGAACAAACACGGGCACCCGCGGCGTGGCCCGCG
GCGTCAGCGGGGTTGCCGCCGTAGAGGTAATGCTGTATACGGGTGGGGG------------------TCGCTTTATAACA
GCGGGGAGGGGGGGAGGAGGGCGTTTTATTAGGGGAAGCAATTGAATGGG------ATGAATGGCACCCGTTTATAGCTG
GGCCTGTAGCTGTACCCATAGCATTTGCGTTCGGAGC------TAGTATTCCCCTGCCCCTGCCTGCCTACCGCGAGGGA
GCGCCTCCGTCTACCTCCTCTTCCCTCCTCC---TCCCGCT---------------------------GCCGGCATGGAG
CCGGGCGGGCCGTGGCGCGATCCGCGCCAGGGGTACATGTACGGGCTCGGATCGCCGATGCAGATGCCGGCGCAGCAGCG
CTCCGACCCGGCCGCCGCTGGCGGGGTTCTCAAGCGGAGCCTCGGCGAGCTGGAGAGGTGGCAGCATCAGCGCCAGTTCG
CCATGCAGCAGGAGCTCTACATGCGCGCCGTCAGGCAGCGCACGGCCGCCACGTCGCCGGCCGTCTCCCCGCTCACCTCG
GCGGACATCGCCGCCGTGCTCGGCGGGGTACCGGCTCAGCCCTTCTTCTCCGGGTCGAGCCTCGGCGGTGGCCTCGCGTC
GCCGTCGTCCACGCTGTCGTCCCTCACGACCGCGTCCAGGGCAGCCATGCCGCTGATTCAGCAGCATGTGCAACGGCAGG
CGCCGTTTCTGCCGTCCTCGGCGCACGCGCAGGCGCAGGCTCAGGCGCATGCTCTCGCGGTGGCGAGGGTGCCGGCTCCG
TCCGCGGCTGGGAGCGAGCTGTCCATCCTGCAGGACCTGGAGAAGCAGCTGCTCGGCGACGACGACGAGGCTGAGCCGGC
GATGAGCGGAACCGGTTCCACGGTGACCAGCTCCGAGTGGGAGGAGACCATCCAGCGGCTCAACTCCATCACGGCCGTGC
CGTCTCCTCCACTCTACGCGGAGGCGACTCCGAACAATAAGAACAACTACAGCGCGGCGATGACGGGGTCGCCGTCGAAC
TCGTCCACTTCCACGGCTTCTTCATCGGCTTCCTGCTCACCGCCAATCTCGGCCACCACGTCGCGTCAATTACTGTCCGA
AGCAGCGGCTGCCATAGCCGACGGCAACCTTAAAACGGCGGCCGCTAATCTTGCAACTCTCAAGCGCGCCGCTAACCCGC
GCGTTGACGCGGAACAGCGGCTGGTGGCCGTGATGGTGGCCGCCCTGTCTTCGCGCATTGCGCCCACTGCATCGGCATCG
TCCCAGCACCTCGCTGACCTCTGCGGCGCCGAGCACCATACCGGGTCCCAGATCCTCCACGACATCACGCCCTGCTTCCG
CCTCGCCCTCGACGCCGCTAACATCGCCATCGTCGAGGCCGTCGCCGGCCACCGCGTCATACATCTGGTGGACTTCGACA
TCAACGCCCCGCAGCACGCGGCTCTCATCCAGCGCCTCGCCGACCGGCGCGTGCCGGGGACATGCCTCCAGGTGACCGCC
GTAACCGATCCCACCTCACCGTTTACGCAGTCCCTGGCAGCGACGCTGCCCGGCGTCGGGGAGCGGCTCAAGAAGCTGGC
GGAGCGGGCCGGCATAGAGTACCACTTCAGAATGATCAGCTGCAGAGCGGCAGAGATTGAGGCATCCAAGCTGGGGTGCG
AGCCCGGGGAGGCGCTGGCCGTCAACCTGGCCTTCGCGCTCTCGCACGTGCCTGACGAGAGCGTCTCGCCGGCGAACCCC
CGCGACGAGCTTCTCCGCCGCGTGCGCGCCCTCGGCCCGCAGGTGGTGGCACTCGTGGAGCAGGAGCTGAACTCCAACAC
CGCCCCGCTGGCCACGCGCTTCTCGGACGCGTACTTGCACTACGGAGCCATTCTCGATGCACTGGACTCGACGGTCAGCC
GGGATAGCGCGGACAGGGCGCGGGCAGAGGAGGCGGTGGCAAACATGTCGGCCAGCGCGGTTGGCCGGGAGGGCGCCGAC
CGGCTGGAGCGGTGCGAGGTCTTCGGCAAATGGCGCGCGCGGTTCGGCATGGCCGGGTTCCGGCCGGTGGCGCTGGCCGC
GGGCATTGCCGACCAGGTCATGGCGCGCGCCGGCGCTCCCCCGCCAGGCCTCGTCGTGAATCAAGAGAACGGCGTGCTCC
GGCTCGGGTGGAAGCAGCGCGTGGTGACCGTGGCGTCCGCCTGGCGCTAATCTGGTGAGGTCGCGCCATCATTGC-----
-CGGCACCAGACAATTGCTTAATTAATTCGCACCCGTCCTCTATTTTTATCGTTTCTTATTTGTTCGATTGGCAAGGTGT
GATGAGCTTGTTCTTCTTGATCTAGTAGTAAAGCTTAGCTGTAGCGACTCATAATCCTCGTAGCTAATATATGGAAAGAG
TACATT-ATTACGCTACTGATTGTCGTCGTTGTTTTTGTCACCTGTTGCTTGGCGAAGTTGTAGATAGCATCGGCTGATC
CACTCCACCGCGTGATTGTGGCTACATACACTTGTACACAGGTTGTAGTTGTACTGCCCAAGTAGTGGGCGCGAGCGTGC
ATCCGGGCCTACCGCCTTTCTTGTCGATTAATGTCTGTTTCCTCACGTCGGCTCGTGAGGTTTTCCTTCGTGACGTGGTA
CTTTCGGGTGTACCCGTCGGTAAAAGT--AGTTGGTCATGCTTGTACGTAATACTGGTAGGAGTAGTAAATTTTGGAAGT
TTATATGTTACTCCGTACAATAGTAGCGGCTTGTT-GTTCGTTGAACATTCATTGCTTTGTTGCCCCTTGCACATCGCAC
CGAA--TCACCGGTAATATTACCGATCGCCTTTTTGAGTTGGGAGGGTGGCTGCAAGGGA-----AGAGATGGTGCACGA
AATGACATGCTAATGTG------CTGCACTGGCTGGCCTCAAAAGTATCCTACTGCT---------GCTGCTGCTGCTGG
CTGCACTCTCCGATTTGGCTTCGATACACAATTACATATGCTGTCAAGTTGATGTGTCGGGGCTCGGGGTTGCGTTCGTG
GAGACGGAAGGGGCCCGGGTCTTTGGTAGTGGAACGAGGCGTCGCCTATGCCTGTAGTGCTGTGTGCTTCAAGCTTACGC
CCAAAGCAATACGTGGAATACGCCTGCTTGCCTCGGTTGCTTATTCAGGTCACCAATGTCGAACTTGTGGATTGTGATTG
CCATTTCCTGCGGCGCCCATTACGGATTCGCTGGTGTCAGTT
>chr2D_17
----------------GCCGGCTCGTGTGGCCCGGCGACGCGCAACGTCGCCCGGGTCTACCTAAGCCGCGAAAGCGAGG
CCTCCTGTGCA-----CAGCCCTACCGCCACAAATC-GGATTACAAAAAAATTGTTTCGCACCGCT--------------
----ACTAGCTGTAGTACTAACACCAATCGGTTGATAAAAAATTGATACCCCGCCATCTGTTCCTTCCCTTTCGCCGAAT
TGAAAGGGACTGCGACTTCTAGAAATCGCAATCGGGGCCCCACTGGCGGTGACCCCGCCGCGTGCATGCACAGGGATCTC
CCGCCCTCCGACGCCCGGCCCCACCCGCAAACATCACCTGCCGCTGCTGC----------CTC---GTTCGAAATTCACG
CGACCGTGGCTCGCATCGCAGGTGAGGGGTGGTGTGCTGTGCCGTG---GAGCTGGACGAAACCGCGGGCCGTTTCCGGG
AAAAACTGGGCGAAAACCAGGCTGTGGCGG---CCACCGGCAGGCGTCGGTGGTGGT-GCGTGCCACAGCAAGGCAAGGC
AGAGCCAGGCCCCCTCCCCC----------CCTTGGTCGTCTGGAGGAGACGGCGTCACCCGAGGCGGGATTGCGTGACG
CAGCGCGTATCCATCGCTTCACACCATTCACTCACCACA-------------CCCGCGCATTTATTTTAGCACAAAGGCC
GCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGAATGGCACCCGTTTATAGCTG
GGCCTGTAGCTGTACCCATAGCATTTGCGTTCGGAGCCAGGAGTAGTATTCCGCTGCCCCTGCCTGCCTACCGC----GA
GCGCCTCCGTCTACCTCCTCTTCCCTCCTCC---TCCTCCCGCTGCCGGCCGCGTTCCGGTTCGCCTCGCCTGCATGGAG
CCCGGCGGGCCGTGGCGCGATCCGCGCCAGGGGTACATGTACGGGCTCGGATCGCCGATGCAGATGCCGGCGCAGCAGCG
CTCCGACCCGGCCGCCGCAGGCGGGGTTCTCAAGCGGAGCCTCGGCGAGCTGGAGAGGTGGCAGCACCAGCGCCAGTACG
TCATGCAGCAGGAGCTCTACATGCGCGCCGTCAGGCAGCGCACGGCCGCCACGTCGGCGGCCGTCTCGCCGCTCACCTCG
GCGGACATCGCCGCCGTGCTCGGCGGGGTCCCGGCCCAGCCCTTCTTCTCCGGGTCGAGCCTCGGCGGTGGCCTCGCGTC
GCCGTCGTCCACGCTGTCGTCCCTCACGACCGCGTCCAGGGCGGCCATGCCGCTGATTCAGCAGCATGTGCATCGGCAGG
CGCCGTTCGTGCCGTCCTCGGCCCACGCG------------CAGGCGCATGCTCTCGCGGTGGCGAGGGTGCCGGCTCCG
TCCGCGGCTGGGAGCGAGCTGTCCATCCTGCAGGACCTGGAGAAGCAGCTGCTCGGCGACGACGACGAGGCTGAGCCGGC
GATGAGCGGAACCGGTTCCACGGTGACCAGCTCCGAGTGGGAGGAGACCATCCAGCGGCTCAACTCCATCACGGCCGCGC
CGTCTCCTCCACTCTACGCGGAGGGGACTCCGAATAATAAGAACAACTACAGCGCGGCGATGACGGGGTCGCCGTCGAAC
TCGTCCACGTCCACGGCTTCTTCCTCGGCTTCCTGCTCACCGCCAATCTCGGCCACCACGTCGCGTCAATTACTGTCCGA
AGCAGCGGCTGCCATAGCCGACGGCAACCTTGAAACGGCGGCCGCTAATCTGGCAACTCTCAAGCGCGCCGCTAACCCGC
GCGGTGACGCGGAACAGCGGCTGGTGGCCGTGATGGTGGCCGCCTTGTCTTCGCGCATTGCGCCTGCTGCCTCGGCATCG
TCCCAGCACCTCGCTGACCTCTGCGGCGCCAAGCACCATACCGGGTCCCAGCTCCTCCACGACATCACGCCCTGCTTCCG
CCTCGCCCTCGACGCCGCTAACATCGCCATCGTTGAGGCCGTCGCCGGCCACCGCGTCATACATCTGGTGGACTTCGACA
TCAACGCCCCGCAGCACGCGGCACTCATCCAGCGCCTCGCCGACCGGCGCGTGCCGGGGACATTCCTGCAGGTGACCGCC
GTAACCGATCCCACCTCACCGTTTACGCAGTCCCTAGCAGCGACGCTTCCCGGCGTCGGGGAGCGGCTCAAGAAGCTGGC
GGAGCGCGCCGGCATAGAGTACCACTTCAGAATGATCAGCTGCAGAGCAGCAGAGATTGAGGCATCCAAGCTGGGGTCCG
AGCCCGGGGAGGCGCTGGCCGTCAACCTCGCCTTCGCGCTCTCGCACGTGCCTGACGAGAGCGTGTCGCCGGCGAACCCC
CGCGACGAGCTTCTCCGCCGCGTGCGCGCCCTCGGCCCGCAGGTGGTGACACTCGTGGAGCAGGAGCTGAACTCCAACAC
CGCCCCGCTGGCCACGCGCTTCTCGGACGCCTACTTGCACTACGGAGCCATTCTCGATTCACTGGACTCGACGGTCAGCC
GGGATAGCGCGGACAGGGCGCGGGCAGAGGAGGCGGTGGCAAACATGTCGGCCAACGCGGTGGGCCGGGAGGGCGCCGAC
CGGCTTGAGCGGTGCGAGGTCTTCGGCAAATGGCGCGCGCGGTTCGGCATGGCCGGGTTCCGGCCGGTGGCGCTCGCCGC
GGGCATCGCCGACCAGGTCATGGCGCGCGTCGGCGCTCCCCCGCCGGGCCTCGTCGTGAATCAAGAGAACGGCGTGCTCC
GGCTCGGATGGAAGCAGCGCGTGGTGGCCGTGGCCTCCGCCTGGCGCTAATCTGGTGAGGTCGCGCCATCATTGCCATTG
CCGGCACCAGACAATTGCTTAATTAATTCGCACCCGTCCTCTATTTTTATCCTTTCTTATTTGTTCGATTGGCAAGGTGT
GATGAGT---TTGTTCTTGATCCAGTAGTAAAGCTTAGCTGTAGCGACTCATAATCCTCGTAGCTAATATATGGAAAGAG
TACATTTATTACGCTACTGATTGTCGTTGTTGTTTTTGTCACCTGTTGCTTGGAGGAGTTGTAGATAGCATCGGCCGATC
CACTCCACCGCGTGGTTGTGGCTACATACACTTGTACACAGGTCGTAGT---ACTGCCCAAGTAGTGGGCGAGAGCGAGC
ATCCGGGCCTACCGCCTTTCTTGTCGATTAATGTCTGTTTCCTCACGTCGGCTCGTGAGGTTTTCCTTCGTGACGTGCTA
CTTTCGGGTGTACTCGTCGGTAAAAGT--AGTTGGTCATGCTTGTACGTAATACT---------AGTATATTTTGGAAGT
TTATATGCT---------AATAGTGACGGTTTGTA-GTTCGTTGAACATTGATTGCTTTGTTGCCCCTTGCACATCGCAC
CC-AATTCACCGGTAATAATATCGATCGCCTTTT-GAGTTGGAAGGATGGCTGGAAGAGA-----AGAGATGGTGCACGA
AATGACATGCTACTACTCCTGCTCTGCACTGGCTGGCCTCAAAAGTATCCTACTACT---------GCC---------GG
CTGCACTCTCCGATTTGGCTTCGATACACAATTACATATGCTGTCAAGTTGATGTGTCGGGGCTCGGGGTTGCGTTCGTG
GAGACGGAAGGGGCCCGGGTCTTTGGTAGTGGAACGAGGCATCGTCTATGCTTGTAGTGCTGTGTGCTTCAAGCTTACGC
CCAAAGCAATACGTGGAATACGCGTGCTTGCCTCGGTTGCTTATTCAGGTCACCAATGTCGAACTTGTCGATTGTGATTG
CCATTTCCTGCGTCGCCTATTACGGATTCGCTGGTATCAGTT
>chr2B_19
------------------CGGCTCGTGTGGCCCGGCGACGCGCAACGTCGCCCGGGTCTACCTAAGCCGCGAAAGCGAGG
CCTCCTGTGCA-----CAGCCCTACCGCCACCAATCTGGATTACAAAAAAATTGTTTCGCACCGCT--------------
----AGT-------------ACACCAATCTGTTGCTAAAATATTGATATCCCGCCATCTGTTCGTTCCCTTTCGCCGAAT
GGAAAGGGACTGCGACTTCTAGAAATCGCAATCGGGGTCCCACTGGCGGTGACCCGG-CGCGTGCATGCACAGGGATCTC
CCGCCCTCCGATGCCCGGCCCCACCCGCAAACATCACCTG---TTGTTGTAGTGCCAGTACTA---GTTCAAAATTCACG
CGCCTGCGGCTCGCAGGTGA-------------GTGCTGTGCCGTAGTAGAGCTCCACGAAACCGCGGGCCGTTTCCGGG
AAAAATTGGGCGAAAACCAGGCGGTGGCGG---CCACCGGCAGGCGTCGGTGGCGGCAGCGTGCCACA-----GCAAGGC
AGAGCCAGGCCCCCTCCCCCTCCC------CCTTGGTCGTCTGGAGGAGACGGCGTCACCCGAGGCGGGATTGCGTGACG
CAGCGCGTATCCATCGCTTCACACCATTCATTCACCACCACACCGCTGCTCCCCCGCGCATTTATTTTAGCAGAATGGCC
GCGCGGGCCCCGCCGTAACGCCCCCCG----CAGGTAAGTTCAAGGTAAACAAACCCGTCCACCCGCGACGTGGCCCGCG
GCGTCAGCGGGGTTCCCGCCGTATAGGTAATGCTGTATACGGGTGGGGGCGGGGGCGGGGGCGGGGGTCGCTTTATAACA
GCGGGGGAGGGGGGAGGAGGGCGTTTTATTAGGGGAAGCAATTGAATGGA------ATGAATGGCACCCGTTTATAGCTG
GGCCTGTAGCTGTACCCATAGCATTTGCGTTCGGAGC------TAGTATTCCTCTGCCCCTGCCTGCCTACCGC----GA
GCACCTCCGTCTACCTCCTCTTCCCTCCTCGTCGTCCTCCCGCTGCCGGCCGGGTTCCGCTTCGCCTCGCCTGCATGGAG
CCGGGCGGGCCGTGGCGCGATCCGCGCCAGGGGTACATCTACGGGCTCGGATCGCCGATGCAGATGCCGGCGCAGCAGCG
CTCCGACCCGGCCGCGGCTGGCGGGGTTCTCAAGCGGAGCCTCGGCGAGTTAGAGAGGTGGCAGCACCAGCGCCAGTTCG
CCATGCAGCAGGAGCTCTACTTGCGCGCCGTCAGGCAGCGCACGGCCGCCACGTCGCCGGCCGTCTCCCCGCTTACGTCG
GCGGACATCGCCGCGGTGCTCGGCGGGGTCCCGGCCCAGCCCTTCTTCTCCGGGTCGAGCCTCGGCGGTGGCCTCGCGTC
CCCTTCGTCCACGCTGTCGTCCCTCACGACCGCGTCCAGGGCGGCCATGCCGCTGATTCAGCACCATGTGCATCGGCAGA
CGCCGTTAGTGCCGTCCTCGGCGCACGCGCAGACGCAGGCACAGGCGCATGCTCTCGCGGTGGCGAGGGTGCCGGCTCCC
TCGGCGGTTGGGAGCGAGCTGTCCATCCTGCAGGACTTGGAGAAGCAACTGCTCGGCGACGACGACGAGGCTGAGCCGGC
GATGAGCGGAACCGGTTCTACGGTCACCAGCTCCGAGTGGGAGGAGACCATACAGCGGCTCAACTCAATCACGGCCGCTT
CGTCTCCTCCACTCTACGCGGAGGCGACTCCGAACAATAAGAACAACTACAGCGCGGCGATGACGGGGTCGCCATCGAAC
TCGTCCACTTCCACGGCTTCTTCCTCGGCTTCCTGCTCACCGCCAATCTCGGCCACCACGTCGCGTCAATTACTCTCCGA
AGCAGCGGCTGCCATCGCCGACGGCAACCTTGAAACGGCGGCCGCTAATCTGGCAACTCTCAAGCGTGCTGCTAACCCGC
GCGGTGACGCGGAACAGCGGCTGGTGGCCGTGATGGTGGCCGCCCTGTCTTCGCGCATTGCGCCCACTGCCTCGGCATCG
TCCCAGCAGCTCGCTGACCTCTGCGGCGCCGAGCACCATACCGGGTCCCAGCTCCTCCACGACATCACGCCCTGCTTCCG
CCTCGCCCTCGACGCCGCTAACATCGCCATCGTTGAGGCCGTCGCCGGCCACCGCGTCATACATCTGGTGGACTTCGACA
TCAACGCCCCGCAGCACGCGGCTCTCATCCAGCGCCTCGCCGACCGGCGCGTGCCGGGGACATGCCTGCAGGTGACGGCT
GTAACCGATCCCACCTCACCGTTTACGCAGTCCCTAGCAGCGACGCTGCCCGGCGTCGGGGAGCGGCTCAAGAAGCTGGC
GGAGCTCGCCGGCATAGAGTACCACTTCAGAATGATCAGCTGCAGAGCAGTCGAGATTGAGGCATCCAAGCTGGGGTGCG
AGCCCGGGGAGGCGCTGGCCGTCAACCTCGCCTTCGCGCTCTCGCACGTGCCTGACGAGAGCGTCTCGCCGGCGAACCCC
CGCGACGAGCTTCTCCGCCGCGTGCGCGCTCTCGGCCCGCAGGTGGTGACACTCGTGGAGCAGGAGCTGAACTCCAACAC
CGCCCCGCTGGCCACGCGCTTCTCGGACGCGTACTTGCACTACGGAGCCATTCTCGATGCACTGGACTCGACGGTCAGCC
GGGATAGCGCGGACAGGGCGCGGGCAGAGGAGGCGGTGGCAAACATGTCGGCCAACGCGGTTGGCCGGGAGGGTGCCGAT
CGGCTGGAGCGGTGCGAGGTCTTCGGCAAATGGCGCGCGCGGTTCGGCATGGCCGGTTTCCGGCCGGTGGCGCTCGCCGC
GGGCATTGCCGACCAGGTCATGGCGCGCGCCGGCGCTCCCCCGCCAGGCCTCGTCGTGAAACCGGAGAACGGCGTGCTCC
GGCTCGGATGGAAGCAGCGCGTGGTGGCCGTCGCCTCCGCCTGGCGCTAATCTGGTGAGGTCGCGCCATCATTGC-----
-CGGCACCAGACAATTGTTTAATTAATTCGCACCCGTCCTCTATTTTTATCGTTTCTTATTTGTTCGATTGGCAAGGTGT
GATGAGT---TGGTTCTTGATCTAGTAGTAAAGCTTAGCTGTAGCGACTCATAATCCTCGTAGCTAATATATGGAAAGAG
TACATT-ATTACGCTACTGATTGCCGTTGTTGTTTTTGTCACCTGTTGCTTGGAGAAGTTGTAGATAGCATCGGCTGATC
CACTCCACCGCGTGATTGTGGCTCCATACACTTGTACACAGGTCGTAGT---ACTGCCCAAGTAGTGGGCGCGAGCGTGC
ATCCGGGCCTACCGCCTTTCTTGTCGATTAATGTTTGTTTCCTCACGTCGGTTCGTGAAGTTTTCCTTCGTGACGTGCTA
CTTTCGGGTGTATACTCGTCAGTAACTTCAGTTGGTCATGCTTGTACGTAATACT---------AGTAAATTTTGGAAGT
TTATATGCT---------AATAGTAGCGGTTTGTTTGTTCGTTGAACATTGATTGCTTTGTTGCCCCTTGCACATCGCAC
CCAAATTCACCGGTAATAATATCGATCGC-TTTT-GAGTTGGAAGGATGGCTGGAAGCCTGGAAGAGAGATGGTGCACGA
AATGACATGCTACTACTCCTGCTGTGCACTGGCTGGCCTCAAAAGTATCCTACTACTACTGCTACTGCC---------GG
CTGCACTCTCCGATTTGGCTTCGATACACAATTACATATGCTGTCAAGTTGATGTGTCGGGGCTCGGGGTTGCGTTCGTG
GAGACGGAAGGGGCCCGGGTCTTTGGTAGTGGAACGAGGCATCGTCTATGCTTGTAGTGCTGTGTGCTTCAAGCTTACGC
CCAAAGCAATACGTGGAATACGCGTGCTTGCCTCGGTTGCTTATTCAGGTCACCAATGTCGAACTTGTGGATTGTGATTG
G--TTTCCTGCGTCGCCCATTACGGATTCGCTGCTATCAGTT
>chr1D_2692
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-----GGAGCGGTGCGAGGTCTTCGGCAAATGGCGCGCGCGGTTCCGCATGGCCGGGTTCTGGCCGGTGGCGCTCGCCGC
GGGCATTGCCGACCAGGTCATGGCGCGCGCCGGCACTCCCCCGCCAGGCCTCGTCGTCAAGGCGGAGAACGGCGTGCTCC
GGCTTGGATGGAAGCAGCGCGTGGTGGCCGTGGCCTCCGCATGGCGTTAATCTGGTGAGGTCGCGCCATCATTGT-----
-TGGCACCAGACAATTGCTTAATTAATTCGCACCCGTCCTCTATTTTTACCGTTTCTTATTTGTTCGATTGGCAAGGTGT
GATGAGT---TTGTTCTTGATCTAGTAGTAAAGCTTAGCTGTAGCGACTCATAATCCTCGTAGCTAATATATGGAAAGAA
TACATT-ATTACGCTACTGATTGTCGTTGTTGTTTTTGTCACCTGTTGCTTGGCGAAGTTGTAGATAGCATCGGCTGATC
CACTCCACCGTGTGATTGTGGCTACATACACTTGTACACCGGTCGTAGT---ACTGCCCAAGTAGTGG------------
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>SNPs
SSSSSSSSSSSSSSSS----------------------------------------------------------------
-----S-----SSSSS------------------------SS----S-S---------S-------SSSSSSSSSSSSSS
SSSS----------------------------------------------------------------------------
------S---------------------------------------------------------------------S-S-
--S-------------------------------------SS-----------S---------SSS--------------
---------SSS-SS-----------S--S-------------------------------------------S------
S-----SS----------------------SSS-----------------------------------------------
--SS--SSS---------------SSSSSS--------------------------------------------------
--------------------------------------S--------------------------------S--------
-------------------------SSSSSS-----------S----S-------S--SS--------S-----------
--------------S--------S--------------------------------------------------------
------SS-----------------------------------------S------------------------------
----------------------------------------------------S---------------------SSSS--
-------------------------------------SS-S------------------------------S--------
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------------------------------------------------------------------S-------------
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-----------------------------S-----S--------------------------------------------
------------------------------------------S-----------------------------S-------
-------SS-----------------------S-------S---------------------------------------
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-----------------------------------------------------------------------------S--
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-----------------------S--------------------------------------------------------
-------------------------------S-------------------S----------------------------
---S------------------------------------------------------------------S---------
---------------------------------------------------S----------------------------
---------------------------------S----------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------S--------------------------------------------
------S-----------------------------------------S-------------------------------
----------------------------S---------------------------------------------------
------------------------------------------------S-------------------------------
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------------------------------------------------------S-------------------------
--------------------------------------------------------------------------S-----
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-------S------------------S-------S---------------------------------------------
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------SSSS--S-------------------------------------------------------------------
---------------------------S----------------------------------------------------
-------------------------------------------S-----SSS----------------------------
-----------------------------------------------------------------------------S--
-------------S-----------------------------------------SSSSSSSSS----------------
-------S-SSSSSSSSS-----------S--------------------S-----------------------------
-S----------------S--S------------S-------S---S------S---S----------------------
------------S-SSS-------------------------------------S-------------SSSSSSSSSS--
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----------------------------------------S---S------S----------------------------
-----------------------S--------------------------------------------------------
------------S----------------------S------
>forward_247
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-------------------------------------------------------------------CCTTTCGCCGAAT
GGAAAGC-------------------------------------------------------------------------
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>reverse_1758
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-----------------------------------------------------------------------------TGC
CGTCTCCTCCACTCTAC---------------------------------------------------------------
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>forward_763
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-----------------------CCTCCCCACAGGTAAGTTCG-------------------------------------
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------------------------------------------
>reverse_2449
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GGCAGAGATTGAGGCATCCA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>forward_1864
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CCACTTCCACGGCTTCTTCA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>reverse_3647
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTGGCTGCAAGGGAAGAGAT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
