>input_sequence_41489
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-------------------------------------------ATGGCTCTTGAAGCAGCCTTCCACTACCTGCAGCTCG
CCGGCGTCCATGGCACATCCACGCCGGCAC---TACTGCTCACCGTT---CTCCTGCTACTCATCATTCGACTAGCATGG
GTGAGGACCACAACGGTGTCAACA---------------AGATTCGGCAAGCAGCAGCAGCTCCCGCCTTCACCTCCAGG
CAAGCTGCCCATCATCGGCCACCTCCACCTCCTCGGCTCCCAGACACACATATCCATCCGGGACCTCGATGCCAAGCATG
GCCGCAATGGCCTCTTGCTCCTCCGCATCGGTGCCGTACCCACCTTGTTCGTGTCCTCGCCGAGCGCCGCCGAGGCCGTC
CTGCGCACCCACGACCAAATCTTTGCGTCGCGGCCGCCATCCATGGCCGCCGACATCATTCGCTACGGCCCGACAGACAT
CGCGTTTGCACCCTATGGTGAGTACTGGCGGCAGGCCAGGAAGCTGTTAACCACGCATATGCTCAGCGCCAAGGTGGTGC
ACTCCTTCCGCCATGGTCGTCAGGAAGAGGTAAAAACTTATCCTCATGTGCATGTGTGCGACGAAATATCAACCA----T
TAGTCCGTCACTCGTCATTGGACTCGCCA----ATTGCTGCAGGTGCGCCTTGTTATCAACAAGATCCGTGAGGCGGCCA
CCAGAGGCACGGTGGTGGACATGAGCGACCTCCTGTCCGGCTACACCAACGACGTCGTGTGCCGTGCGGTCCTCGGAGAA
TCCCACCGCAAGGCAGGCCGGAACAGGCTTTTCAGCGAGCTCACAGAGATCAACGTCTCCCTTCTCGGCGGGTTCAGCCT
CGAGAATTACATCCCCCCAAACATGGTAATGGCGGATGTGCTCTTGAGGCTGGTTTCCGTCAAGGCTCAACGACTCAACA
AGAGGTGGGACGACTTGTTCAACGAGATCATTGAGGAACACCTGCACCCCAGCAAACCATCATCCGGCGAGCAGCAAGCA
GCAGATTTCATAGATCTTCTGCTCTCTCTCAAGGAAGAGTACGGTCTCACTACGGATAACATCAAGGCCATCTTGGTGGT
AA-TAATTACATTCACTTGTA-TTTTCCCATTGCAAATAAAATTGTCCATGTCCTCCTATACTGTTGTCAT-ACTACTAC
--TACAAT------TTTTGGAGCTGGAGGGAGTATATAAGTAGTATACTAAGAGTTCATTCACAGTTTCCATGTTGCATA
TATATATATAGTTAGTACTTATGTGGTCATATGATCAACAGACACACACGCTAAGTTGGATCGTTTGATCTTAACAGGAC
ATGTTTGAGGCTGGCATAGAAACATCCTATCTGACGTTGGAGTACGGCATGGCTGAGCTCATGAACAACAGACACATTCT
GAAGAAATTACAGGAGGAGGTAAGATCCCAAGGCAAAAAATTAGACATGATAACAGAGGAGGACCTTAGCAGCATGGCCT
ACCTAAGGGCAACCATCAAGGAGACGCTGCGCATGCACCCACCAGCGCCCTTCCTCCTCCCGCACTTCTCCACCGCTGAC
---TGCAAGGTCGACGGATACTTGATACCCGCCAACACACGTGTCCTTGTGAATGCCTGGGCCCTAGGGAGGGATCCGTC
GTCTTGGGAGAGGCCAGATGATTTCTGGCCTGAGAGGTTTCTGCAGGATCAAGCTGGCGATGTGGACACCCAGATGAGGG
GTAAAGATCTTAGGTTCCTGCCATTTGGGTTCGGGCGGAGGATTTGTCCAGGGATGAATTTCGGGTTCGCCACCATGGAG
GTTATGTTAGCAAATCTCATGTACCATTTTGATTGGGATGTTCCGAATATGATGGGTACCGGTGCAGGGGTTGATATGGC
TGAGTCGTTCGGGTTAACGCTTCGCCGAAAGGAGAAGCTTCAACTTGTTGCTCAGATTCCCTAA----------------
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>chr5B_1_TraesCS5B01G007200
ATGTTATTAAAAGAAAAGACTCATGAGCATAACATTATCAGTAGATATACTCCAGAGTTAACTTGGTGAAAGTTGACAAA
AGGAAGATTATATCTTTTTATCCTCAATTATTTGTGATGAAAATCCTCTTCCAGCAAGTAATATCAAAAGACTGAAAACA
TTCTGATAGATAACTGATCTTTCATCAGGTC-AACCGTGTAAGCAAAAAAGTCAAGAGGAAAAGCATTACGTTCAATGAT
ATATGCTTCACGCAACCCTCAGAGGAGTTCCACATACAAATGCAAAGCAAAAAAAAAAAGGAAATACTTCTCAGAAAAAG
AATGCTTGATACCCAATCAATATTCATGCCGTGTTTATAGAGAGAGATGAGTAGGAACTCAATTAATTAACATGCTAAAA
AGCAAAGAAGTAAGCAATTAAACAGC--AAAGAAGTAACCAATTAGTTAACATGATAAAAAGTAAATTAGTAAAAAAATT
AATTAGCATGGTAAAAAGTAAAGAAGTAATCAATTAAAAAGAAAAGAGTAACCAATTAAAAAGCAAAGAAGTAACCAATT
AATTAACATGGTAAATGTGAAATTGTTGGAATGTCATTCACAACTCAGTGTGAAGTAGTCGT-GGTCACGTGCATTGGCA
CGGGTTGCATATATACTCAAATAGTAACGTAGAAACATGCAGAGAGTATTATAATTGGAAGTGTCATCTTTTCAATAAGA
AATATTGTATTATATGGCTTATTGGATGGTCAATAACTTATTTGGCTTTGCAACACACGTACGGAAAAGCAAGG------
-TAAGTGCAAATAAGTA---TTTTTCTAGAGATGTTGTGTGGCTGGAGTGAATACATGTTACGGCCGTGT--TGTAAGCT
--------------CAGCCAGTGGTGGAAAACTGCACGAGACAC-------------------------TTGACATAATT
GATGGAGAGCTTGAGGCTGTGCTTATATAGAT------AGAGATGAGTAGGACGTAGGAACCCAAACC----CAGCCCA-
----GC--TT-------CC----TGATCAGTTGTGTGGACCACATGGCTCTTGAAGCAGCCTTCCACTACCTGCAGCTCG
CCGGCGTCCATGGCACATCCACGCCGGCAC---TACTGCTCACCGTT---CTCCTGCTACTCATCATTCGACTAGCATGG
GTGAGGACCACAACGGTGTCAACA---------------AGATTCGGCAAGCAGCAGCAGCTCCCGCCTTCACCTCCAGG
CAAGCTGCCCATCATCGGCCACCTCCACCTCCTCGGCTCCCAGACACACATATCCATCCGGGACCTCGATGCCAAGCATG
GCCGCAATGGCCTCTTGCTCCTCCGCATCGGTGCCGTACCCACCTTGTTCGTGTCCTCGCCGAGCGCCGCCGAGGCCGTC
CTGCGCACCCACGACCAAATCTTTGCGTCGCGGCCGCCATCCATGGCCGCCGACATCATTCGCTACGGCCCGACAGACAT
CGCGTTTGCACCCTATGGTGAGTACTGGCGGCAGGCCAGGAAGCTGTTAACCACGCATATGCTCAGCGCCAAGGTGGTGC
ACTCCTTCCGCCATGGTCGTCAGGAAGAGGTAAAAACTTATCCTCATGTGCATGTGTGCGACGAAATATCAACCA----T
TAGTCCGTCACTCGTCATTGGACTCGCCA----ATTGCTGCAGGTGCGCCTTGTTATCAACAAGATCCGTGAGGCGGCCA
CCAGAGGCACGGTGGTGGACATGAGCGACCTCCTGTCCGGCTACACCAACGACGTCGTGTGCCGTGCGGTCCTCGGAGAA
TCCCACCGCAAGGCAGGCCGGAACAGGCTTTTCAGCGAGCTCACAGAGATCAACGTCTCCCTTCTCGGCGGGTTCAGCCT
CGAGAATTACATCCCCCCAAACATGGTAATGGCGGATGTGCTCTTGAGGCTGGTTTCCGTCAAGGCTCAACGACTCAACA
AGAGGTGGGACGACTTGTTCAACGAGATCATTGAGGAACACCTGCACCCCAGCAAACCATCATCCGGCGAGCAGCAAGCA
GCAGATTTCATAGATCTTCTGCTCTCTCTCAAGGAAGAGTACGGTCTCACTACGGATAACATCAAGGCCATCTTGGTGGT
AA-TAATTACATTCACTTGTA-TTTTCCCATTGCAAATAAAATTGTCCATGTCCTCCTATACTGTTGTCAT-ACTACTAC
--TACAAT------TTTTGGAGCTGGAGGGAGTATATAAGTAGTATACTAAGAGTTCATTCACAGTTTCCATGTTGCATA
TATATATATAGTTAGTACTTATGTGGTCATATGATCAACAGACACACACGCTAAGTTGGATCGTTTGATCTTAACAGGAC
ATGTTTGAGGCTGGCATAGAAACATCCTATCTGACGTTGGAGTACGGCATGGCTGAGCTCATGAACAACAGACACATTCT
GAAGAAATTACAGGAGGAGGTAAGATCCCAAGGCAAAAAATTAGACATGATAACAGAGGAGGACCTTAGCAGCATGGCCT
ACCTAAGGGCAACCATCAAGGAGACGCTGCGCATGCACCCACCAGCGCCCTTCCTCCTCCCGCACTTCTCCACCGCTGAC
---TGCAAGGTCGACGGATACTTGATACCCGCCAACACACGTGTCCTTGTGAATGCCTGGGCCCTAGGGAGGGATCCGTC
GTCTTGGGAGAGGCCAGATGATTTCTGGCCTGAGAGGTTTCTGCAGGATCAAGCTGGCGATGTGGACACCCAGATGAGGG
GTAAAGATCTTAGGTTCCTGCCATTTGGGTTCGGGCGGAGGATTTGTCCAGGGATGAATTTCGGGTTCGCCACCATGGAG
GTTATGTTAGCAAATCTCATGTACCATTTTGATTGGGATGTTCCGAATATGATGGGTACCGGTGCAGGGGTTGATATGGC
TGAGTCGTTCGGGTTAACGCTTCGCCGAAAGGAGAAGCTTCAACTTGTTGCTCAGATTCCCTAAATCTACTATGTACAAG
TTTATTTCGACATGAGCACAAGAATAAAGGCAAGGAATAAAATGACTAC---TGTACTACTGTTTATCAGTCATTATTAC
GTCCTCCATTCCTAAATACTCCCTCCGTCCGGAAATATTTGTCATCAGAATGGATAAAAAGTGGTGTATCTAGAACTAAA
ATACATCTAGATACATCCCCTTTTATTCATCTTGATGACAAGTATTTCCGGACGGAGGGAGTATAAGTCTTTTTAGAGAT
TCCAATAAGAGACTACGTACAGAGCAAAATGAGTGAATCTACACTCTATAATATGTCTATATACATCTGTATGTAGTCCA
TAGTGAAATTTCTAAAAAGACTTACATTTAGGAACGGAGGGAGTACTATATAGTTC------------------------
--------------AGATGTATGAGAAGTTTATC-----------------ATAATGTACATCAGGC-------TAAACA
ATAGAGCAATGAACATA-ATTTGAGCGGCGATAGACCTATCTGCCACAACACGCTGCAGCCACATAGCACGCCCGCAGAT
GC----------------------------------GGTGAGCAAAGCGGAGTGGATAAAAAAATTGAAAGCAAATAAGG
TCTAAACAGTATATGTGTAGGTAACTAATCATGCATGTATGGACACAGATATAAGCATGTAAACATTATTTCTACAGTAA
AATAAAATTGTAGTCACAAGTGATTAAGCTCAAACTTGAGTCGTTGCAACTCGCAAGTTATAGGGCGACAAGCTGCTGTG
TGTCTAAGACATATTGTAA-ATCATGTTCTCCAAAGGGAATAGGTGGCGGTCTCATGTTTGGGCTTACCTCTAGATAAAC
CATGTGTCCTGTTGTCAGATGAGTTGCCACTGGTTGAGGAACTACTAGTTGAGTAGGGCTTGCGTCATCA-GTCATTTGG
TCCGAGGCTAGAAAGTTGTTTTCATCATCAGACTGGTCCTTCTCTTTGGCCCTGATCAGAGAGGGGAGCTGGTATGGTAA
GGATTTTGCGCGGTCATAGAGCACCAAGGCCCAGAATTGCTCTGCT
>chr5A_1
ATGTTATTAAAATAAAAGACTCATGAGCATAACATTATCAGTAGATATACTCCAGAGTTAACTTGGTGATTGTTGACAAA
AGGAAGATTATATCTTTTTATCCTCATTTATTTGTGATGAAAATCCTCCTCCAGCAAGTAATATCAAAAGACTGAAAACA
TTCTAATAGATAACTGATCTTTCATTAGGTCAAACCGTGTAAGCAAGCAAGTCAAGAGGAAAAGCATTACTTTGGATGAT
ATATGCTTCACGCAACCCTCAAAGGAGTTCCACATACAAATGCAAAGCAAAAAA-----GGAAATACTTCTCAGAAAAAG
AATGCTTGATACCCAATCAATATTCATGATGTGTTTATAGGGAGAGATGACTAGGAACCCAATTAATTAACATGGTAAAA
AGCAAAGAAGTAACCAATTAAACAGCAAAAAGAAGTAACCAATTAATTAACATGGTAAAAACTAAAGAAGTAAC-AAATT
AATTAACATGGTAAAAAGTAAAGAAGTAATCAATC----------------------AAAAAGCAAAGAAGTAAACAATT
AATTAACATGGTAAATGTGAAATTGTTGGAATGTCATTCACAACTCAATGTGAAGTAGTCGT-GGTCCCGTGCATTGGCA
TGGGTTGCATATATACTCAAATAGTAACATAGAAACATGCAGAGAGTATTATAGTTAGAAGTGTCATCTTCTCAATAAGA
AA-----TATTATACGGTTTATTGGATGGTCCATAACTTCTTTGGCTTTGCAATGCACGCACGGAAAAGCAAGG------
-AAA-------TAAGTA---TTTTTCTAGAGATGTTGTGTGACTGGAGTGAATACACGTTACAGCC--GT--TGAAAGCT
--------------CAGCCAGTGGTGGAGAAGTGCACAAG-CAGTGCTATTCTG--------ATTAGTATTGACATAATT
GATGGAGAGCTTGAGGCTGCGCTTATATAGAT------AGAGATGAGTAGGAAGTAGGAACCCAACCCAGCCCAGCCATT
GTAGGC--TT-------CC----TGATCAGTTGTGTGGACCACATGGCTCTTGAAGCAGCGAACCACTACCTGCAGCTCG
CCGGCGTCCATGGCACATCCACGCCGGCAG---TACTACTCACCGTT---CTCCTGCTACTCATCATTCGACTAGCATGG
GTGAGGACCGCAACCGCGTCAACA---------------AGATTCGGCAAGCAGCAACAGCTCCCGCCTTCACCTCCAGG
CAAGCTGCCCATCATCGGCCACCTCCACCTCCTCGGCTCCCAGACACACATATCCATCCGGGACCTCGATGCCAAGCATG
GCCGCAATGGCCTCTTGCTCCTCCGCATCGGTGCCGTACCCACCTTGTTCGTGTCCTCGCCGAGCGCCGCCGAGGCCGTC
CTGCGCACCCACGACCAAATCTTTGCGTCGCGGCCGCCATCCATGGCCGCCAACATCATTCGCTATGGGCCAACAGACAT
CGCGTTTGCACCCTATGGCGAGTACTGGCGGCAGGCCAGGAAGCTCTTAACCACACATATGCTCAGCGCGAAGGTGGTGC
ACTCCTTCCGCCATGGTCGTCAAGAAGAGGTAAGAACTTTTCCTCCTGCGCAGAAACG------AATATCGACCGTTAGT
TAGTCCATCACTCATCATCTGACTCTCTGATCGATTGCTGCAGGTGCGCCTCATTATCAACAAGATCCGTGCGGCGGCCA
CCAGAGGCACGGCGGTGGACATGAGCGAGCTCCTGTCCGGCTACACCAATGACGTCGTATGCCGTGCGGTCCTAGGAGAA
TCCCACCGCAAGGAAGGCCGGAACAGGCTTTTCAGCGAGCTCACAGAGATCAATGTCTCCCTTCTTGGTGGGTTCAGCCT
CGAGAATTACATCCCCCCAAATATGGTAATGGCGGATGCGCTCTTGAGGCTGGTTTCCGTCAAGGCTCAGCGACTCAACA
AGAGGTGGGACGACTTGTTCAACGAGATCATCGAGGAACACCTACACCCCAGCAAACCATCATCTGGCGAGCAGCAAGCA
GCAGATTTCATAGATCTTCTGCTCTCTCTCAAGGAAGAGTACGGTCTCACTACGGATAACATCAAGGCCATTTTGGTGGT
AA-TAATTACATTCGCAG----TTTTCT-ATTGCAAATA--ATTGTCCATG---TCCTATACTATTGTCAATTTGTCATA
CTAGCTACTATAACATTTGGAGCTGGAGGGAGTATATAAGTAGTATGTTAAGAGTTG-----------CCATGTTGCATA
TACAGTTAGTACTTT---TTATGTGGTGATGTGATAA----ACACACA--CTAAGTTGGACCATTTGATCTTAACAGGAC
ATGTTTGAGGCAGGCATAGAAACATCTTATCTGACGTTGGAATACGGCATGGCTGAGCTCATGAACAACAGACACATTCT
GACAAAATTACAGGAGGAGGTAAGATCCCAAGGCAAAAAGTTAGACATGATAACGGAGGAGGACCTTAGCAGCATGGCCT
ACCTAAGGGCAACCATCAAGGAGACGCTGCGCATGCACCCACCAGCACCCTTCCTCCTCCCACACTTCTCCACCGCTGAC
---TGCAAGATCGACGGATACTTGATACCCGCCAACACACGTGTCCTTGTGAATGCTTGGGCCCTAGGGAGGGATCCATC
GTCTTGGGAGAGGCCAGAGGATTTCTGGCCTGAGAGGTTTCTGCAGGATCAAGATGGTGATGTGGACACCCAAATGAGGG
GTAAGGATCTTAGGTTCCTGCCATTTGGGTTCGGGCGGAGGATTTGTCCAGGGATGAATTTTGGGTTCGCCACCATGGAG
GTTATGTTAGCAAATCTCATGTACCATTTTGATTGGGATGTTCCAAATATGGTGGGTACCGGCGCAGGGGTTGATATGGC
TGAGTCGTTCGGGTTAACGCTTCGCCGAAAGGAGAAGCTTCAACTTGTTCCTCAGATTCCCTAAACCTACTATGTGTAAG
TTTATTTCGA-ATGAGCACAAGAATAAAGGCAAGGAATAAAATGACTAATAATGTAGTACTGTTTATCAGTTATTATTAC
TA------------------------------------------------------------------------------
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----------------------------------------------TATACTCCCTCCATCTCAAAATAAGTGTCTAAAC
TTTGTTCTAGCTCTAGATGGATGAGAAGTTAATTTATTACACAGATCATATATGATGTACCACAGGTGCATACATAAAGA
ATAAAGCAATTTGCATACATTTGAGTGGCTATAGACCTATCAGCCACAGCACGCTGCAGCCACACAGCACGCCCGGAGAT
GT----------------------------------GGTGAGCAAAGCGCAATGGATAATAAAACTGAAAGCAAATACGG
CCTAAACAATATATGTATAGGTAACTAATCATGCATGTATGAACACAGATATAAGCATGTAAACATTATTTCTACAATAA
AA----------------AGTGATTAAGCTCAAACTTGAGTTGTCGCAACTCACAAGTT----------AAGCTGCTGTG
TGTCTAAGACAATTAGTAACATCATA-TCTCCAAGGGGAATCAGTGACGATCACATGTTTGAGCTTACCTCTAGATAAAC
CATGTGTCCTGCTGTCGTATCAGTTGCCACTGGTTGAGGAACTTCTAGCTGAGTAGGGCTTGCTTCATCAGGTCATTTGG
CCTGAGGCTAGAAAGTTGTTTTCATCATCAGACTGGTCTTTCTCTTTGGCCGCGATCAGAGAGGGGATCTGGTCCTGTAA
GGATTTTACACGGTCATAGAGCACCGAGGCCCGGGATTGTTCTGCT
>chr5D_512
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----------------------------------TAAAAAGTAAAAAGTGATGAATTAAAAAGCAAAGAAGTAACCAATT
AATTAACATGGTAAATGTGAAATTATCGGAATGTCATTCAAAACTCAAAGCGAAGTAGCCGTTGGTCCCGTATATTGGCA
C-GGTTGCATATATATTCAAATAGTAACGTAGAAACACGCAGAG--TATTATATTTGGAAGTGCCATATTCTCTACAAGA
AA-----TATTATACGGTTTATTGGATGGTCAATAACTTCTTTGGCTTTGCAATACACGTACGGAAAAGCAAGGAAACTG
CAAA-------TAAGTA---TTTTTCTAGAGATGTTGTGTGGCTGGAGTGAATACACGTTACAGCC--GTGTTGTAAGCT
--------------CAGCCAGTGGTGGAAAACTGCACGAG-CAC-------------------------TTGACATAATT
GATGAAGAGCTTGAGGCTGTGCTTATATAGAT------AGAGCTGAGTAGGAAGTAGGAACCCAACCCAGCCCAGCCATT
GTAGGC--TT-------CC----TGATCAGTTGTGTGGACCACATGGCTCTTGAAGCAGCGTTCCACTACCTGCAGCTCG
CCGGCATCCATGGCACATCCACGCCGGCAG---TACTACTCACCATT---CTCCTGCTACTCATCATTCGACTAGCATGG
GTGAGGACCACAACTGCGTCAACA---------------AGATTCGGTAAGCAGCAACAGCTCCCGCCTTCACCCCCAGG
CAAGCTGCCCATCATCGGCCACCTCCACCTCCTCGGCTCCCAGACACACATATCCATCCGGGACCTCGATGCCAAGCATG
GCCGCAATGGCCTCTTGCTCCTCCGCATCGGTGCCGTACCCACCTTATTCGTGTCCTCGCCGAGTGCCGCCGAGGCTGTC
CTGCGTACCCACGACCAAATCTTTGCGTCGCGGCCACCATCCATGGCCGCTGACATCATTCGCTACGGCCCCACAGACAT
CGCATTTGCACCCTATGGTGAGTACTGGCGGCAGGCCAGGAAGCTCTTAACCACACATATGCTCAGCGCCAAGGTGGTGC
ACTCCTTCCGCCATGGTCGTCAAGAAGAGGTAAGAACTTTTCCTCCTGTGCAGAAACG------AATATCAACCGTTAGT
TAGTCCGTCACTCATCATCTGACTCTCCGATCGATTGCTGCAGGTGCGCCTCGTTATCAACAAGATCCATGAGGCGGCCA
CCAGAGGCACGGCGGTGGACATGAGCGAGCTCCTGTCCGGCTACACCAACGACGTCGTATGCCGTGCAGTCCTCGGAGAA
TCCCACCGCAAGGAAGGCCGGAACAGGCTTTTCAGCGAGCTCACAGAGATCAACGTCTCCCTTCTTGGCGGGTTCAGCCT
CGAGAATTACATCCCCCCAAACATGGTAATGGCGGATGTGCTCTTGAGGCTGGTTTCCGTCAAGGCTCGGCGGCTCAACA
AGAGGTGGGACGAATTGTTCAACGAGATCATTGAAGAACACCTACACCCCAGCAAACCATCATCTGGCGAGCAGCAAGCG
GTAGATTTCATAGATCTTCTGCTCTCTCTCAAGGAAGAGTACGGTCTCACTACAGATAACATCAAGGCCATCTTGGTGGT
AAGTAATTACATTCACAG----TTTTCCCATTGCAAATA--ATTGTCCATG---TCCTACACTGTTGTCATTACTACTAC
--TACAAT------ATTTGGAGCTGGAGGGAGTATATAAATAGTATATTAAGAGTTGG-----------CATGTTGCATA
CATAGTTAGTACTTT---TTATGTGGTGATGTTATCAACACACACACA--CTAAGTTGGATCCTTTGATCTTAACAGGAC
ATGTTTGAGGCAGGCATAGAAACATCTTATCTGACGTTGGAGTACGGCATGGCTGAGCTCATGAACAACAGACACATTCT
GAAAAAATTACAGGAGGAGGTAAGATCCCAAGGCAAAAAGTTAGACATGATAACGGAGGAGGACCTTGGCAGCATGGCCT
ACCTAAGGGCAACCATCAAGGAGACGCTGCGCTTGCACCCACCAGCGCCCTTCCTCCTCCCACACTTCTCCACCGCTGAC
---TGCAAGATCGACGGATACTTGATACCCTCCAACACACGCGTCCTTGTGAATGCTTGGGCCCTTGGGAGGGATCCATC
GTCTTGGGAGAGGCCAGAGGATTTCTTGCCTGAGAGGTTTCTACAAGATCAAGATGGTGATGTTGACACCCAAATGAGGG
GTAAGGATCTTAGGTTCCTGCCATTTGGGTTCGGGCGGAGGATTTGTCCAGGGATGAATTTCGGGTTCGCCACCATGGAG
GTTATGTTAGCAAATCTCATGTACCATTTTGATTGGGATGTTCCGAATATGGTGGGTACCGGCGCAGGGGTTGATATGGC
CGAGTCGTTCGGGTTAACGCTTCGCCGAAAGGAGAAGCTTCAACTTGTTCCTCGGATTCCCTAAACCTACTATGTATAAG
TTTATTTCGACATGAGCACAAGAATAAAGGCAAGGAATAAAATGACTAATAATGTAGTGCTGTTTATCAGTTATTATTAC
TA------------------------------------------------------------------------------
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----------------------------------------------TATATATTTC------------------------
--------------AGATGGATGAGAAGTTAATTTATTGCACAGATCATATATGATGTACCTCAGGCGCATACATAAAGA
AGAATGCAATTTGCATACATTTGAGTGGCGATAGACCTATCTGCCACAACACGCTGCAGCCACACAGCACGCCAGCAGAT
GTATGTATATGTATAGGTAAAACTAATATATGTATAGGTGAGCAAAGCACAATGGATAATAAAACTGAAAGCAAATAAGG
CCTAGACAATATATGTATAGGTAACTAATCATGCATGTATGGAGACAGATATAAGCATGTAAACATTATTTCTACAATAA
AATAAATTTTACAC-----------------------------TCACAACTCGCAAGTTATAGGGAGAGATGCTGCTGTG
TGTCTAAGAAAATTTGTAATATCCTGTTCTCCAAAGGGAATCAGTGACGATCTGATGTTTGGGCTTACCTCTAGGTAAAT
CATCTGTTCTGCTGTCAGATGAGTTGCCGCTGGTTGAGGAACTTCTAGTTGAGTAGGGCTTGCGTCATCA-GTCATTTGG
TCTGAGGCTAGAAAGTTGGTTTCATCATCTGACTGGTCCTTCTCTTTGGCCGTGATCAGAGAGGGGAACTGGTCTTGTAA
GGATTTTGCACGGGCATAGAGCACCGAGGC-CAGAATTGCTCTGCT
>chr5B_777
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------------------------------------------------------------ACGGAAAAGAATGG------
-AA-GTGCGAATAAGTTTTTTTTTTCTAGACAAGTTGTGTGGCTGGAGTGAATACATGTTACGGCCGT----TGTAAGCC
ACGCCTCGCTCAGCCGGTCTGTCGCGCAAAACTGCACGAG-CAGTGACATTCTG--------A--------GACATAATT
GATGAAGAGCTTAAGGCCGTGCATGTTTATAT------AGAGATATGCATG-AGTAGGAACCCAACCCAGCCCAGCCCA-
----CCCATTGTAGGCAGGCACTTGCTCAGTTGTCCGGACGACATGGCTTTCGAAGGAGCATACCATTTCCTGCAGCTCG
CCGTCGGCCATGCCACATCCTCGCCGGCGG---CACTGCTCCTCGTCGTAGTACCCTTACTGCTGTTACTGCTAGCATCG
GTAAGGAGGTCCACCATGACCGGAC------------GCA------------AGCTGCGGCTCCCGCCTTCGCCTCCGGG
CAGCCTCCCCATCATCGGCCACCTCCACCACATCGGCGCCCAGACCCATATCTCCCTCCAGCACCTGGTCGACAAGTACG
GCCACAACGGCCTCCTCTTCCTCCGTGCTGGGGCGGTGCCCACCGTCATCGTCTCCTCGCCCAGCGCCGCCGAGGCCGTC
ATGCGCACCCACGACCACATCCTCGCGTCGCGCCCGTGGTCCATGGCCTCCCACATCCTGCGCTACAACACCACCGACGT
CGCCTTCTCGCCCCTGGGCGAGTACTGGCAGCACACCAGGAAGCTCGTCAACACCCATCTCCTCAGCGCCAAGAAGGTGC
ACTCCTTCGCAAATGGCCGTCAAGAAGAGGTA------------------------------------------------
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>chr5B_777
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------------------------------------------------------------ACGGAAAAGAATGG------
-AA-GTGCGAATAAGTTTTTTTTT-CTAGACAAGTTGTGTGGCTGGAGTGAATACATGTTACGGCC--GT--TGTAAGCC
ACGCCTCGCTCAGCCGGCCTGTCACA-AAAACTGCACCAC-CAGTGACATTCTGATTCCTGTA--------GACATAATT
GATGAAGAGCTTAAGGCCGTGCATGTTTATAT------AGAGATATGCAT---GTAGGAACCCAACCCAGCCCAGCCCA-
----GCCATTTTAGGCACC----TGCTCACTTGTCTGGACGACATGGCTTTTGAAGGAGCGTACCATTACCTGCAGCTCG
CCGTCGGCCATGCCATATCCTCGCCGGCGGCAATGCTCCTCATCGTC---GTACCCTTACTGCTGTTACTGCTAGCATCC
GTAAGAACCACGGCATCCACAAGA---------------A------------AGCTCCGGCTCCCGCCTTCGCCTCCGGG
CAGCCTTCCCATCATCGGCCACCTCCACCACATCGGCGCCCAGACCCACATCTCCCTCCAGCACCTGGTCGACAAGTATG
GCCACAACGGCCTCCTCTTCCCCCGCACGGGGGCGGTGCCCACCGTCATCGTCTCCTCGCCCAGCGCCGCCGAGGCCGTC
ATGCGAACCCACGGCCACATCCTCGCGTCGCGCCCATGGTCCATGGCCTCGCACATCCTGCGCTACAACACCACCGACGT
CGCCTTCTCGCCCCTGGGCGAGTACTGGCAGCAAACCAGGAAGCGCGTCAACACGCACCTGCTCAGCGCCAAGAAGGTGC
ACTCCTTCGCAAATGGCCGTCAAGAAGAGGTA------------------------------------------------
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>chr5D_897
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-----------------------------------------------------------------------GACATAATT
GATGGAGAGCTTGAGGCTGTGCATGTTTATTTATATTGAGAGAGATGCATG-AGTAGGAACCCAACCCAGCCCAGCCATT
GTAGGC--TT-------CC----TGGTCAGTTG--TGGACGGCATGGCTCTTGAAGCTGCCCACCACTACCTGCAGCTCG
CCGTCGGCCATGGCACATCCACGCCGGCGG---TACTCCTCATCGTCGTTGTTCCCTTACTGATGTTAGTGCTAGTATCA
GTAAGAACATCAGCGTCCACAAGA---------------A------------AGCTGCGGCTCCCGCCTTCGCCTCCGGG
CAGCCTTCCCATCATCGGCCACCTCCACCACATCGGCGCCCAGACCCACATCTCCCTGCAGCACCTGGTCGACAAGTACG
GCCACAACGGCCTCCTCTTCCTCCGCGCCGGCGCCGTGCCCACCGTCATCGTCTCCTCGCCAAGCGCCGCCGAGGCCGTC
ATGCGCACCCACGACCACATCCTCGCGTCGCGCCCGTGGTCCATGGCCTCGCACATCCTTCGCTACAACACCACTGACGT
CGCCTTCTCGCCCTTGGGCGAGTACTGGCAGCACACCCGGAAGCTCGTCAACACGCACCTGCTCAGTGCCAAGAAGGTGC
ACTCCTTCCGCCATGGCCGTCAAGAAGAGGTA------------------------------------------------
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>chr5D_969
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-------------------------------------------------------------------------AGCCCA-
----GCCATT-------CC----TAGTCAGCTGTCTGGACGCCATGGCTCTTGAAGCAGCGTACCACTACCTGCAGCGCG
CCGTCGGCCATGGCACATCCACAGAA---GCACTACTACTCACCGTT---CTCCTGCTACTCATCATCCGAGTAGCATGG
GTAAGAGCCTTCACCACCACCACCGCATCGACAAAATGCA------------AGCAGCAGCTCCCGCCTACACCTCCAGG
CAAGCTGCCCATCATCGGCCACCTCCACCTCATCGGCTCCCACCCCCACGTATCCTTCCGCGACCTCGCCGCAAAGCATG
GCCGCGACGGCCTCATGCTCGTCCATGTCGGTGCGGTGCCCACCGTGGTGGTGTCCACACCTCAGGCCGCCGAGGCCGTC
CTGCGCACACACGACCACGTGTTCGCGTCCAGGCCACGTAACCCCGTCGCCGACATCATCCGCTACAACTCCACTGACAT
CGCATTCGCGCCCTACGGCGACTACTGGCGTAGGGCTAGGAAGGTCGTCAACACGCATCTGCTCAGCGTCAAGATGGTCT
ACTCCAAGCGCCATG-----------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------
>chr5B_1073
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTCACCCTT---CTCCTGCTACTCATCATTCGACTAGCATGG
GTGAGGACCACAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GCCTCGTTATCAACAAGATCCGTGAGACGGCCA
CCAGAGGCACGGCGGTGGACATGAGCGAGCTCCTGTCCGGCTACACCAACGACATCGTGTGCCGTGCGGTCCTCGGAGAA
TCCCACCGCAAGGCAGGCCGGAACAGGCTTTTCGGCGAGCTCACGGAGATCAACGTCTCCCTTCTCGGCGGGTTCAGCCT
CGAGAACTACATCCCCCCAAACATGGTAATGGCCGATGTGCTCTTGAGGCTGGTTTCCGTCAAGGCTCGACGACTCAACA
AGAGGTGGGACGACTTGTTCAACGAGATCATTGAGGAACACCCGCACCCCAGCAAACCATCATCCGGCGAGCAGCAAGCA
GCAGATTTCATAGATCTTCTGCTCTCTCTCAAGGAAGAGTACGGTCTCACTACGGATAACATCAAGGCCATCTTGGTGGT
AA-TAATTACATTCACTTGTACTTTTCCCGTTGCAAATA--ATTGTCCGTGTCTTCCTATACTGTTGTCAT-ACTACTAC
AGTATAAT------ATTTCGAGCTGGAGGGAGTATATAAGTAGTATATTAAGAGTTCATTCACAATTATAT------ATA
TATATATATA--TAGTACTTATGTGGTGATATGATCAACAGACACACACGCTAAGTTGGATCGTTTGATCTTAACAGGAC
ATGTTTGAGGTAGGCATAGAAACATCTTATCTGACATTGGAGTACGGC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>chr5B_2323
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------GGCATGGCTGAGCTCATGAACAACAGACACATTCT
GAAAAAATTACAGGAGGAGGTAAGATCCCAAGGAAAAAAGTTAGACATGATAACAGAGGAGGACCTTAGCAGCATGGCCT
ACCTAAGGGCAACCATCAAGGAGACGCTGCGCATGCACCCACCAGCGCCCTTCCTCCTCCCGCACTTCTCCATCGCTGAC
TACTGCAAGATCGACGGATA-TTGATACCCTCCAACACACCCGTCCTTGTGAATGCCTGGGCCCTAGGGAGGGATCCATC
GTCTTGGGAGAGACCAGAAGATTTCTGGCCTGAGAGGTTTCTGCAGGATCAAGCTGGCGATGTGGACACCCAGATGAGGG
GCAAAGATCTTAGGTTCCTGCCATTTGGGTTCGGGCGAAGGATTTGTCCAGGGATGAATTTCGGGTTCGCCACCATGGAG
GTTATGTTAGCAAATCTCATGTACCATTTTGATTGAGATGTTCCGAATAAGATGGCTACCAGCGCAGGGGTTGATATGGC
TGAGTCGTTTGGGTTAACGCTTCGCCGAAAGGAGAAGCTTCAACTTGTTGCTCAGATTCCCTAAACCTACTATGTATAAG
TTTATTTCGACATGAGCACGAGAATAAAGGCAAGGAATAAAATGACTAAT---GTAGTACTGTTTATCAGTCATTATTAC
TTCCTCTGTTACTAAATA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>SNPs
------------S--------------------------------------------------------SS---------
--------------------------S---------------------S-------------------------------
----S--------------------S--------------------SS----------------------S--SS-----
---------------------S--------------------------------SSSSS---------------------
----------------------------SS----------S---------S-------S---------------S-----
-------------S-------------------------------S--------S------S----SS-----SS-----
-----S-----------------------------------S---S---S-SS---------------------------
-----------------------------------------------S-------------------S------------
-----------------------------------------------------S----------------S---------
--SSSSS-------S--S---------------------S-------------S--------------------------
-S------S-----------------------------------------------------------------------
----------------------------------------S---------------------------------------
----------------------------------------------------S------------S--------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------------------------------------------S----------------------------------
----------------------S----------S-----S-----S------SSSSS-SSSSSS----------S-----
-------------S----SS-----S--S----------------------S----------------------------
------------S---------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------SS------------S--------------------------
--------------S--------------------------------S----------------S--S------------
----------SS---------------S----------------------------------------------------
-----------S--------------S-----------------------------------------------------
---S-----------------------------------S----------------------------------------
--------------------------------------------------------------------------------
---------S-------------------------------------------------------------------S--
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-----------------------------------------------------------------S----------S---
------------------------------------------------S-------S-----------------------
S-----SS--S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---------------------------
-------------------S----------S--S-------------------S------S-----------------S-
---S------SSS------------S--------------------------------------S---------------
-S-----------------------------------------------S-S-------S----S---------------
S-------S-------S-----------------------------------------------------------S---
------S--SSSSSSSSS-----------------------S--S--------------------S--S-----------
-----------SS----------------------------SS---S--S------------------------------
-----------S-------------------------------S------------------------------------
--S------------------------------------------------S---------------S-----S-S----
---------S---------------S--------------------
>forward_921
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TGGTGGAAAACTGCACGAGA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_2943
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGCAGGGGTTGATATGGC
TG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_2739
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
GTCTTGGGAGAGGCCAGAT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_4076
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------GGTAA
GGATTTTGCGCGGTC-------------------------------
