>input_sequence_41458
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------------------ATGGCCTCCTCGTCGCTGGACACGGAGGCGGGAGCCGGAGCGCAGCACAAGGCCGG---CGG
CGACGGCAGCGGGTACACCACCGCGGCCACCGCCCACGCGGTAGACACAGGTTCGTCGTCGTGTAAACGTCAATAATCCA
TCTACTAGTAGCTTGTTAAGTTTCGAGAT--------------------------GCATGGCAATGGAATGACGCGGGAG
TATGCATGAGCACGTTTGCAGATTCATGGCAGCAGGTTGGGCTGCTGCTGGTGACGGGGTTCAACTGCGCCTACGTGCTC
AGCTTCTCCAACCTGATGATGGTGCCGCTGGGGTGGGGGTGGGGCGCCGCCTGCCTGCTGCTCCTCGCCGCCGCCGCCTG
GTACGCCAACTGGCTCCTCGCCGGCCTCCACGTCGTCGACGGCCAGAGGTTCATCCGCTACAGGGACCTCATGGGCTTCG
TCTTCGGTACGCTAGCTATCGTTCTAGCCAGAGTTTCTTTTTT-CTTTTCGAAAAAGCGTTCTAGCTAGGCTGACTCAAT
GACTTAATAAGAGCTTCGTGACTAATCATAACGGAGAAGAGAACGAAATGCATCCGGCACGTCCTCACTGATTACGCTCT
GCTTGCTGTGCGTGTGAAGGGAGGAAAATGTACTACCTCACCTGGTTCCTGCAGTTCACCACCCTGCTCCTGGGAAGCAT
GGGCTTCATTCTGCTCGGCGGAAGAGCACTCAAGGTACGTATAATTACGGA-GCCATCACTACTCTGTAGTAGTAACAT-
--------------------------------TTTCCATAGACACACAACAATATTACTGCTCCAAATTGGTTGATTAAT
TAGTTGATCATGAGTCAAAATAGCATTAGCGCGAGCAACTTGCACGATTAACTTAACTAACCAAAGTCAACGTGC----G
TGCGTGCGTGCGTTGCTTTCCACCCGCATGCAGGCGATCAGCGCGGAGTTCACCCAGACGCCTCCGCGGCTGCAGTGGTT
CATCGCCGCGACGGGGTTCGTCTACTTCGCCTTCGCCTACTTCGTGCCCACCATCTCCGCCATGAGGAACTGGCTGGCCA
CCTCCGCCGCGCTCACCGTCACCTTCGACGTGGCGCTGCTGGCCGTCCTCGTCAGAGACGGCCGGTCGAACGATCGGAGC
GGGAGG--------------------------------------------------------------------------
----------------------------------------GACTACAGCATCCACGGGACGGGGGCGGAGAAGGCGTTCA
ACGCGCTGGGGGCCGTGGCGGCGATCCTGGTGTGCAACACCTCGGGCCTGCTCCCGGAGATCCAGTCGACGCTGCGTAAG
CCGGCGGTGGGCAACATGCGGCGGGCGCTGGCGCTGCAGTACACGGTGGGCGCCGCGGGGTACTACGGGATCAGCGTGGC
CGGGTACTGGGCGTACGGCGCCGCCGCGTCCGAGTACCTCCCCAACCAGCTCTCCGGCCCGCGCTGGGCCTCCGTGCTCA
TCAACGCCACCGCCTTCCTCCAGAGCATCGTCTCGCAGCACGTAAGAGTAATTTCAAACGATC------------CAAGT
TGTGATGGCCACTACGTACGTACACATGGGTGCTGATGATGCCGGTGCAGCTGTTCACGGTGCCGATCCACGAGGGCATG
GACACGGGGCTGCAGCGGCTGGAGGAGGGCATGTTCTCGCGCTACAACATGACGCGCAGGCTCTTCGCCAGGGGGCTGCT
CTTCGGGGTCAACGTCTTCGTCACCGCGCTCTTCCCATTCATGGGCGACTTCGTCAACCTCTTCGGCTCCTTCGCGCTCT
TCCCGCTCACCTTCATGTTCCCCAGCATGATCGTCCTCA-----------------------------------------
---------------------------AGATCAAAGGGGAGTGCGACGGGAGATGGGGCAGGCTCTGGCACTGGGGCATC
ATCGTCGTCTCCTCCGCCGTCGGCCTCGCCACCTCCGCCGCCGCCGTCAGACTCATCCTGCACAACGCCAGCGTCTACCG
CTTCTTCGCCGACACCTAG-------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr3D_1_TraesCS3D01G408800
GGTATGCTGACGCCTACATTCAGACGTCGGAGGAGGACATTACCAAGTCGGAGTTGGAAAACGACGAGTAGTTGATCTTT
TCTTTTAACAGTCTATGCTATAAACTATCTATGTATCCATATTAT---CGGCCACCCCGGCGAGTAGTTCATCTTTTTTT
TTAACAATTGATCCTTGGTACTACCT-------------------CTGGCCGGTGGC-----CGACTAAGGAGGCGGGCG
AGGGTGCGCTGTTGGATGGGGAGAGGGCAATGTGCCATCGACCAGCGGGCCCGGGGAGGGGAGAGGGCGAGCGCGCGCGC
GTCCGTCTCGTTTCTGCGCCGACGTAAATCCGGCT-AAAAAATGGGCCGGGAATGGGTCGCCCGCGGACGCGT-------
----GTCCGTTTGGGTCGGCGCGTTGGGCCGCCTTTTGTGTCCGTATCGACCGAAACGGATGGC-GCGGATGAAATGGGT
CGCCTCATTGAAGTTGCTCTAAACCACTTTTTATCAACACAAATGCGTTAACTAATACTACTAGCCAGACACAGAAGAGC
ATCAGGTGTAAATAAATAAATCAAATGGCGTTCC-AGATCCCAAGCTTTTGTGCTGATCCATTGCTGGA----GGAGCAT
CGCGTACGTTTAATAAGGAACTATCACATCACATTTCGCTGCCACTTGCGGTTTGATTTGATCTGATTTGATTTTGCACG
TAGGTCGTTTTTAGGGGAGGGG-CCTACGCACTCGCGCGCGGGCCGGATACGTACGTACGTCCGCCCTCGTGCTGAGCAG
GCCGATCGACGCTAGTGGTGCACCTTTACTAGACCCTGGCAACGACATGCATG---ATCACAGGACCTTTGGTTTGTGAC
CTCACTACTCCTTCGTCTATATATCTGGGCG-CTATATGAGCTGTTA---GGCCATATCCTTCGCCGGTTCCCTTCCTGC
CTGCCTCCCT--AGGT-TCGTTCAAACAGATTCGCTCAGCACAGGCAGCTCGACGACGTAGCAGAAAAAGAGAACTAGAG
A--AGCGATCAGTTAGCCATGGCCTCCTCGTCGCTGGACACGGAGGCGGGAGCCGGAGCGCAGCACAAGGCCGG---CGG
CGACGGCAGCGGGTACACCACCGCGGCCACCGCCCACGCGGTAGACACAGGTTCGTCGTCGTGTAAACGTCAATAATCCA
TCTACTAGTAGCTTGTTAAGTTTCGAGAT--------------------------GCATGGCAATGGAATGACGCGGGAG
TATGCATGAGCACGTTTGCAGATTCATGGCAGCAGGTTGGGCTGCTGCTGGTGACGGGGTTCAACTGCGCCTACGTGCTC
AGCTTCTCCAACCTGATGATGGTGCCGCTGGGGTGGGGGTGGGGCGCCGCCTGCCTGCTGCTCCTCGCCGCCGCCGCCTG
GTACGCCAACTGGCTCCTCGCCGGCCTCCACGTCGTCGACGGCCAGAGGTTCATCCGCTACAGGGACCTCATGGGCTTCG
TCTTCGGTACGCTAGCTATCGTTCTAGCCAGAGTTTCTTTTTT-CTTTTCGAAAAAGCGTTCTAGCTAGGCTGACTCAAT
GACTTAATAAGAGCTTCGTGACTAATCATAACGGAGAAGAGAACGAAATGCATCCGGCACGTCCTCACTGATTACGCTCT
GCTTGCTGTGCGTGTGAAGGGAGGAAAATGTACTACCTCACCTGGTTCCTGCAGTTCACCACCCTGCTCCTGGGAAGCAT
GGGCTTCATTCTGCTCGGCGGAAGAGCACTCAAGGTACGTATAATTACGGA-GCCATCACTACTCTGTAGTAGTAACAT-
--------------------------------TTTCCATAGACACACAACAATATTACTGCTCCAAATTGGTTGATTAAT
TAGTTGATCATGAGTCAAAATAGCATTAGCGCGAGCAACTTGCACGATTAACTTAACTAACCAAAGTCAACGTGC----G
TGCGTGCGTGCGTTGCTTTCCACCCGCATGCAGGCGATCAGCGCGGAGTTCACCCAGACGCCTCCGCGGCTGCAGTGGTT
CATCGCCGCGACGGGGTTCGTCTACTTCGCCTTCGCCTACTTCGTGCCCACCATCTCCGCCATGAGGAACTGGCTGGCCA
CCTCCGCCGCGCTCACCGTCACCTTCGACGTGGCGCTGCTGGCCGTCCTCGTCAGAGACGGCCGGTCGAACGATCGGAGC
GGGAGG--------------------------------------------------------------------------
----------------------------------------GACTACAGCATCCACGGGACGGGGGCGGAGAAGGCGTTCA
ACGCGCTGGGGGCCGTGGCGGCGATCCTGGTGTGCAACACCTCGGGCCTGCTCCCGGAGATCCAGTCGACGCTGCGTAAG
CCGGCGGTGGGCAACATGCGGCGGGCGCTGGCGCTGCAGTACACGGTGGGCGCCGCGGGGTACTACGGGATCAGCGTGGC
CGGGTACTGGGCGTACGGCGCCGCCGCGTCCGAGTACCTCCCCAACCAGCTCTCCGGCCCGCGCTGGGCCTCCGTGCTCA
TCAACGCCACCGCCTTCCTCCAGAGCATCGTCTCGCAGCACGTAAGAGTAATTTCAAACGATC------------CAAGT
TGTGATGGCCACTACGTACGTACACATGGGTGCTGATGATGCCGGTGCAGCTGTTCACGGTGCCGATCCACGAGGGCATG
GACACGGGGCTGCAGCGGCTGGAGGAGGGCATGTTCTCGCGCTACAACATGACGCGCAGGCTCTTCGCCAGGGGGCTGCT
CTTCGGGGTCAACGTCTTCGTCACCGCGCTCTTCCCATTCATGGGCGACTTCGTCAACCTCTTCGGCTCCTTCGCGCTCT
TCCCGCTCACCTTCATGTTCCCCAGCATGATCGTCCTCA-----------------------------------------
---------------------------AGATCAAAGGGGAGTGCGACGGGAGATGGGGCAGGCTCTGGCACTGGGGCATC
ATCGTCGTCTCCTCCGCCGTCGGCCTCGCCACCTCCGCCGCCGCCGTCAGACTCATCCTGCACAACGCCAGCGTCTACCG
CTTCTTCGCCGACACCTAGAGCACGACTATCCCGCCGCGCAGGACGGCAGGATGATGATGCAGTACGTGCGCCCAACCGT
GACATAACAGTTACTACTACCACCACCACCAGACCATCGTATCCGTGTCAATTCGTGGGCACGTTAACATGCCAAACGTG
AGACCAAAAAATAGCAGTACTCATAGTCATAGTAGTGGTGGTGAACCACCTGCATTGGACGCCATTTGAGCAAGAAGCAG
CTTCCATTTCGGAACGAAAACCA-----------AAGATAAAATAAAATAATGCCACTTCCCCTTGGAAGAC-ATCACTG
CGGGCGGATTTGTACAGACGAATCAATCAATCAATCAAAAAACAAACATATCCCGGGTGAAACAAACGGCAGCTCAGAAC
CA-------------------------------CATCCATATGTACAC--------ACTTGCAAGTACCACACACGGTTT
GCTGGATCCATCAGCAGCAGTTTCTCGTTTTTCTCTTCTTTTTCCCTTTTTTTTTTGTTGTTTTCGCATGCCAATGGC--
---------------TGTTTCCTCCGGCTGGAGTTTGGATCATTCCTGGTTGGGTGTAGATACTCGAGACCGGCCCCTGC
TCCCATCTTTGGAGC---GGCGGATTCATCGGCCCTGCAGAACTCGACGCAGAC------CGATGCCTGGCGTAATCTCC
GAGAGCCGATCGAGCCCTTCATGGACTGAGC-TTGGAGAGCCTGCAGTCCA---TCGTCCAGTGTGACGCAGGGG---TG
GTCTCCAGCAACGCCACCCATCAGCAGTGATCCAAACCACCACTTGCTAATATAGCTTTATTCTGGTGGTGATTGGGCTC
CGGCAGATTGGGCATGACTCCAAAGTCTGTCCACATTCACAGCAGGTCTGCAAAGCAAACACTTTTGTTATTACAAATGA
TTTTGATGCCGACGTTTCAACCCACGCACAAAAAACAGAAAATGATTTCCCAAGAAGCAACAAC-AATGCGCTAATCCAC
TCACCTGGTGTCCACAGCCAAAAGCCATGTCTTTCGGGTTCACAAGGCAGATAGGGCAAACCTG
>chr5D_1
GGTATGCTGACGCCTACATTCAGACGTCGGAGGAGGACATTACCGAGTCGGAGTCGGAAAACGACGAGTAGTTGATCTTT
TCTTTTAACAGTCTATGCTATGAACTATCTATGTATCCTTATACTATCCGGTCACCCCGGCGAGTAGTTCATCTTTTCTT
TTAACAGTTGATCCTTGGTACTATCTTTATACTATCTATGTTGAACTGGCCGGCGGCATCGGCGACGAAGGAGGCGGGCG
AGGGTGCATTGTTGGATGGGGAGAGGGCAATGTGCCACCGACCAGCGGG-CCTGGGAAAGGAGAGGGCGAGCGCGCGCAC
GTCTGTCTCGTGTCCGCACCGACACAAATCCGGCTAAAAAAATGGGTCGGAAATGGATCACCCGCGGACGAAAAGCGGAC
GCGCGTCCGTTTGGGTCGGCGCGTTGGGCCGCCTTTTATGTCCGCGCCGACCCAAACGAACGGCGGCGGACGAAATGGGT
CGCCTCATTGGAGTTGCTCAAAC---------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_460
--------------------------------------------------------------------------------
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-------------------TAAACCACTTTTTATCAACAAATGCATCAGTTGAC--ACTACTAGCCAGACACGGAAGAGC
ATCAGGTGTAAATAAATTAAATGACGTT-----CGAGATCCCAAGCTTTTGTGTTGATCCATTGCTGGA----GGAGCAT
C----ACGTTTAATAAGATACTATCACATCACATTTTGCTGCCACTTGCAGTTTGATTTGATTTGATTTT-----GCAGG
TACGTCGTTTTTAGGGGAGGGT-CCTACGCACTCGCGCA----CCGGATACGTGCGTACGTCCGCCCTCGTGCTGAGCAG
GCCGA----CTCTAGTGGTGCATCTTTACTGTATCCTGGCAACGACATGCATGATCATCACAAGACCTTTAATCTGTGAC
CTCACTCCTCT---GTCTATATATCTGGGCGCTTATATGAGCTGTTGGGCGGCCATATCCTTCGCCGGTTCTCCTCCTGC
CTGCCTGCCTAGAGGT-TCGTTCAAACAGATTCGCTTAGCA----CAGCTCGACGACGTAGCAGAAAAAGAGAACCAGAG
AGGAGCGATCAGTTAGCAATGGCTTCCTCGTCGCTGGACACGGAGGCGGGAGCCGGACCACAGCACAAGGCCGG---CGG
CGACAGCAGCGGGTACACCACGGCGGCCACCGCCCACGCAGTAGACACAGGTTCGTCGT---GTAAACGTCAGTCTTAAA
TTGTAGTACGTGTCTGCTGCTGCTAGGTGATTGCTGATTAACCTCGAGATGCATGGCATGGCAATGGCATGCCGCGTGCT
GAGCGCG--------TTGCAGATTCATGGCAGCAGGTTGGGCTGCTGCTGGTGACGGGGTTCAACTGCGCCTATGTGCTC
AGCTTCTCCAACCTGATGATGGTGCCGCTGGGGTGGGGCTGGGGCGCCGCCTGCCTGCTGCTCCTCGCCGCCGCCGCCTG
GTACGCCAACTGGCTCCTCGCCGGCCTCCACGTCGTCGACGGCCAGAGGTTCATCCGCTACAGGGACCTCATGGGCTTCG
TCTTCGGTACGC-------------AGCTAGAGTTTCTTTTTTTCTTTTCCAAAAAGCGTTCTAGCTAGGCTGACTAAAT
GACTTG---AGAGCTTCGTGACTAATTATAATG-----GAGAACGAAATGCATCCGACACGTCCTCACTGATTATGCTCT
GCTTGCTGTGCGTGTGAAGGGAGGAAAATGTACTACCTCACCTGGTTCCTGCAGTTCACCACCCTGCTCCTGGGAAGCAT
GGGCTTCATTCTACTCGGCGGGAGAGCACTCAAGGTTTACCACTCTCGATCGGCCATCACCACTTTATAATATTTTTCTC
TCAATACAAACTTCATACTACTGGTAGTAATATTTCCATACACACAACAGCATGATT---------------------AT
TGGTTGATCATGAGTCAAAATAGCATTAGCGCGAGCAACTTGCACGATTAACTAA--TAACCCGAGTCAACGTGCGTCGG
TGCGTGCGTGCGTTGCTTTGCACC----TGCAGGCGATCAGCGCGGAGTTCACCCAGACCCCTCCGCGGCTGCAGTGGTT
CATCGCCGCCACGGGGTTCGTCTACTTCGCCTTCGCCTACTTCGTGCCCACCATCTCCGCCATGCGGAACTGGCTGGCCA
CCTCCGCCGCGCTCACCATCACCTTCGACGTCGCGCTGCTGGCCGTCCTCGTCAGAGACGGTACTGGTGGAGTGGTGGTG
ACCACGCGCATATAT------TGCGTGCATGCATTTCATTCCTTTCGACAGCGAGAGCTCGCCGAGGTTGTTGTAACGAA
TTGTGTACGTGCGATAGGTCGGTCGAACTCGCGGCGGGACTACGCCG---TCCACGGGACGGAGGCGGAGAAGGTGTTCA
ACGCGCTGGGCGCGGTGGCGGCGATCCTGGTGTGCAACACCTCGGGCCTGCTCCCGGAGATCCAGTCGACGCTGCGGAAG
CCGGCGGTGGGCAACATGCGGCGGGCGCTGGCGCTGCAGTACACGGTGGGCGCGGCGGGGTACTACGGGATCAGCGTGGC
CGGGTACTGGGCGTACGGCGCCGCCGCGTCCGAGTACCTGCCCAACCAGCTCTCCGGCCCGCGCTGGGCCTCCGTGCTCA
TCAACGCCACCGCCTTCCTCCAGAGCATCGTCTCGCAGCACGTACGTGAACTCGACCGATCCGTCTCATCTGCTCAATCT
ACATGACTACATAGGTAACGTTGG---------TGATGATGGCGGTGCAGCTGTTCACGGTGCCGATCCACGAGGGCATG
GACACGGGGCTGCAGAGGCTGGAGGAGGGCATGTTCTCGCGCTACAACATGACGCGCCGCCTCTTCGCCAGGGGGCTGCT
CTTCGGGGTCAACGTCTTCGTCACCGCGCTCTTCCCCTTCATGGGCGACTTCGTCAACCTCTTCGGCTCCTTCGCGCTCT
TCCCGCTCACCTTCATGTTCCCCAGCATGATCATCCTCA-----------------------------------------
---------------------------AGATCAAAGGGGAGTGCGACGGGAGATGGGGCAGGCTCTGGCACTGGGGCGTC
ATCGTCGTCTCCTCGGCCGTCGGCCTCGCCACCTCCGCCGCCGCCGTCAGATTGATCCTGCACAACGCCAGCGTCTACCG
CTTCTTCGCCGACACCTAGAGCACGACTATCCCGCCGCGCAGGACGGCAGGATGATGATGCAGTGCGTGCGCCCAACCGT
GACATAACAGT-ACTACTAATACCACCACCAGATCATCGTATCCGTGTCAATTCGTGGGCACGTTAGCATGCCAAACGTG
ACACT--AAAATAGCAGTACACATATTAGTAGTAA--GTGGTGAACCACCTGCATTGGACGCCATTTGAGCAAGAAGCAA
CTTGCATTTCG------AAACGAAAACCGAAGATAAAATAAAATAAAATAATGCCACTTCCCCTTGGAAGAAGATCACTG
CGGGCGGATTTGTACAGACGCATCAATCAATCAATCAAAAAACAAGCATATCCCGGTTGAAACGGCAGCTCA---AGAAC
GAATTCTCTAACCCTCGAGTCAGATCACACATCCATCCATATGTACTCACGTTGCAACTTGCAAGTACCACACACAAA--
----GATCCATCAGCGGCAGTTTCTCGTTTTCTTTTCATTTCTC-----TTTTTTTGTTGTTTTCGCATGCCAATGGCCC
TTGAAAACCTGCATCTGTTTCCTCCGGCTGGAGTTTGGATCATTCCTGGGTGGGTGTAGATACTCGAGACCGGCCCCTGC
TCCCGTCTTTGGAGCGGCGGCGGATTCATCGGCCCTGCAGAACTCGACACAGACACAGACCGATGCCTGGCGTAATCTCC
GAGAGCCGATCGAGCCCTTCATGGACCGAGCTTTGGAGAGCTTGCAATCCATCGTCGTCCAGTGTGACGCAGGGGTGGTG
GTCTCCAGTAACGCCACCCATTCGCAATGATCCAAACCACCACTTGCTAATATAGCTTTATTCTGGTGGTAATTGGACTC
CGACAGATTGGACATGACTCCAAAGTCTGTCCACATTCACAGCAGGTCTGCAAAGCAAATGCT----TTGTTAGAAATGA
TGTTGACGCCGACGTTTCAACCCACGCACAAAAAACAGAAAATGATTTCCCAAGAAGCAACAACAAATGCGCTAATCCAC
TCACCTGGTGTCCACAGCCAAAAGCCATGTCTTTCGGGTTCACAAGGCAGATAGGGCACACCTG
>chr3A_543
--------------------------------------------------------------------------------
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------------------AAATGACGTT-----C-AAATCCCACACTTTTGTGTTGATCCATTGCTGGATCGAGGAGCGT
C----ACGTTTAATAAGAC---ATCACATCACATTTTGTTGCCACTTGCGGTTTGATTTGATCTGATTTGATTTCGCACG
TAGGTCGTTTTTAGGGGAGGGGGCCTACGCACTCGCGCGCCGGATGGATACGTACGTACGCCCGCCCTCGTGCTGAGCAG
GCCGATCGACTCTAGTGGTGCACCTTTACTGTATCCCGGCAACGACATGCATG---ATCACAAGACCTTTAGTCTGTGAC
CTCACTCCTCT---GTCTATATATCCGGGAGCCTATATGAGCTGTTA---GGCCATATCCTTCGCCGGTTCCATCCCTGC
CTGCCTGCCTGCCTAGGTCGTTCAAACAGATTCGCTGAGCA----CAGCTCGACGACGTAGCAGAAAAAGAGAACTAGAG
A--AGCCATCAGTTAGCAATGGCCTCCTCGTCGCTGGACACGGAGGCGGGAGCCGGAGCGCAGCACAAGGCCGCCGCCGG
CGACGGCAGCGGGTACACCACCGCGGCCACCGCCCACGCGGTGGACACAGGTTCGTCGTCGTGTAAACGTCAATAATCCA
TCT---AGTAGCTTGTTAAGTTTCGAGAC--------------------------GCATGGCAATGGTGCATGATGACTT
GATGAGTG----CGTGTGCAGACTCATGGCAGCAGGTGGGGCTGCTGCTGGTGACGGGGTTCAACTGCGCCTACGTGCTC
AGCTTCTCCAACCTGATGATGGTGCCGCTAGGGTGGGGGTGGGGCGCCGCCTGCCTGCTGCTCCTCGCCGCCGCCGCCTG
GTACGCCAACTGGCTCCTCGCCGGCCTCCACGTCGTCGACGGCCAGCGGTTCATCCGCTACAGGGACCTCATGGGCTTCG
TCTTCGGTACGC-------------AGCCAGAGTTTGTTTTTTTCTTTTCGAGGAAGCGTTCTAGCTAGGCTGACTCGAT
GACTTG---AGAGCTTCGTGACTAATTGCAATG-----GAGAACGAAATGCATCCGACACGTACTCACCGATTATGCTCT
GCTTGCTGTGCGTGTGAAGGGAGGAAAATGTACTACCTCACCTGGTTCCTGCAGTTCACCACCCTGCTCCTGGGAAGCAT
GGGCTTCATTCTGCTCGGCGGGAGAGCACTCAAGGTTCACCGT--TCGATCGGCCATCACCTCCTTAAAAATATTTTTTT
CTTTTT--------------------------------------------------------------------------
---TTTATCGTGAGTCATAATGGCATTAGCACGATTA---------ATTAACTAA--TAACAACCGTAGTCAA-------
--CGTGCGTGCGTTGCTTTCCACC----CGCAGGCGATCAGCGCGGAGTTCACCCAGACCCCTCCGCGGCTGCAGTGGTT
CATCGCCGCGACGGGGTTCGTCTACTTCGCCTTCGCCTACTTCGTGCCCACCATCTCCGCCATGCGGAACTGGCTGGCCA
CCTCCGCCGCGCTCACCGTCACCTTCGACGTCGCGCTGCTCGCCGTCCTCGTCCGAGACGGTACTGGTGGACTGGTGGTG
ACCACGCATATGCGTGCTGCGTGCGTGCATTTTCATTATACCATTCAAAGGCAAAAGCTCACT---GACGTTGTAACGAA
CTGCGTGCGTACG-TAGGGAGGTCGAACTCGCGGCGGGTTGACTACGCCATCCACGGGACGGAGGCGGAGAAGGCGTTCA
ACGCGCTGGGGGCCGTGGCGGCGATCCTGGTGTGCAACACCTCGGGCCTGCTCCCGGAGATCCAGTCGACGCTGCGGAAG
CCGGCGGTGGGCAACATGCGGCGGGCGCTGGCGCTGCAGTACACGGTGGGGGCCGCGGGGTACTACGGGATCAGCGTGGC
CGGGTACTGGGCGTACGGCGCCGCCGCGTCCGAGTATCTGCCCAACCAGCTCTCCGGCCCGCGCTGGGCCTCCGTGCTCA
TCAACGCCACCGCCTTCCTCCAGAGCATCGTCTCGCAGCACGTACGTACTTACTCTACTTCTCGTCTGTTCCAGTCAAGT
TGTGATGGCCACTACGTACGTACACATGGGTGCTGATGATGCCGGTGCAGCTGTTCACGGTGCCGATCCACGAGGGCATG
GACACGGGGCTGCAGCGGCTGGAGGAGGGCATGTTCTCGCGCTACAACATGACGCGCAGGCTCTTCGCCAGGGGGCTGCT
CTTCGGGGTCAACGTCTTCGTCACCGCGCTCTTCCCATTCATGGGCGACTTCGTCAACCTCTTCGGATCCTTCGCGCTCT
TCCCGCTCACCTTCATGTTCCCCAGCATGATCGTCCTCAAAGTAAGTAAATTTCTTTTACAACCAGCAGTGCGTGGATTG
TTAATTTGACGACTGTGCCTGCCGTGCAGATCAAAGGGGAGTGTGACGGGAGATGGTGCAGGCTCTGGCACTGGAGCATC
ATCGTCGTCTCCTCGGCCATCGGACTCGCCACCTCCGCCGCCGCGGTCAGACTCATCCTGCACAACGCCAGCGTCTACCG
CTTCTTCGCCGACACCTAGAGCACGCCTATCCCGCCGCGCAGG--------ATGATGATGCAGTGCGTGCGCCCAACCGT
GACATAACAGTT---ACTACTAGCACTATCAGGCCATCGTATCCGTGTCAATGCGTGGGCACGTTAACATGCCAAACGTG
ACACT--AAAATAGCAGTACTCATAGTAGTA------GTGGTGAACCACCTGCATTGGACGCCATTTGAGCAAGAAGAAA
CTTCCAATTCG------AAACGA-----------AAAATAAAATAAAATAATGCCACCTCCCTTGCAAGAGAACACT---
---GCGGATTTGTACAGACGCATCAATCAAC----CAAAAAACAAACATATCCCGGGTGAAACGGCAGCTCA---AGAAC
CA-------------------------------CATCCATATGTACAC--------ACTTGCAAGTACCACACACGGTTC
GCTGGATCCATCAGCAGCAGTTTCTCGTTTTTCTGTTCTTTTCTCTCTC--TTTTTGTTGTTTTCGCATGCCAATGGCCC
TTGAAAACCTGCATCCATTTCTTGC-GCTGGAGTTTGGATCATTCCTGGTTGGGTGTAGATACTCGAGACCGGCCCCTGC
TCCCATCTTTGGGA---CGGCGGATTCATCGGCCCTGCAAAACTCGACGCAGAC------CGATGCCTGGTGTAATCTCC
GAGAGCCGATCGAGCCCTTCATGGACTGGGC-TTGGAGAGCTTGAAGTCCA---TCGTCCAGTGTGACGCAGGGG---TG
GTCTCCAGTAACGCCACCCATTCGCAATGATCCAAACCACCACTTGCTAATATAGCTTTATTCTGGTGGTGATTGGACTC
CGACAGATTGGGCATGACTCCAATGTCTGTCCACATTCACAGCACGTCTGCAAAGGAAGTGCT----TTGTTAGAAAGGA
TGTTGACACCGACGTTTCAACCCACGCAC-AAAAACAGAAAATGATTTCCCAGGAAGCAACAGC-AATGCGCTAATCCAC
TCACCTGGTGTCCACAGCCAAAAGCCATGTCCTTCGGGTTCACAAGGCAGATAGGGCAAACCTG
>SNPs
--------------------------------------------S---------S-------------------------
---------------------S----------------S---SS-------S-------------------------S--
------S----------------S-----------------------------S------------S-------------
-------SS----------------------------S-----------S--S----SS-------------------S-
---S-------S--S--S-----SS---------------------S---S-----S--S----------SSS-------
-------------------------------------S------SSS-----S-----S-S---------S---------
----------S----------------------------S-SSSSSSSSSSSSSSS----------------S-------
-----------------S--SSS-SSSSSSSSS--------------------S--------------------------
-SSSS------------SS-----------------S-------------------------------------S-----
----------------------------------------S---------------------------------------
----------S-------------------SS-S----------------------------S-------S--S------
------S---SSSS------------------------------------------------------------------
------S-----------------------------S----SSSS-----------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
---SSS----------------------S--------------------------------------S---S----S-SS
S---SS--SSSS--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------SSSSSSSSSSSSS-------------------------------------------------------
-----SSSS-----------------S----S-SSSSS------------------S-----------------S-----
--------------------------------------------------------------------------------
---------------------S--------------S-SSSSSSS-SSSSS---------S---S-S--S--S-SSSS--
----------------------------------------S-----SS-SS--SS-SSSSSSSSSSSSSSSSSSSSSS--
-S---------------------------------------------------S-SS------S----------------
------------------------SSSS-------------------------------S--------------------
----------------------------------------------------------------S---------------
-------------------------------S-----------------------------SSSSSSSSSS-SSSS-SSS
SSS-S---------------------------------------------------------------------------
----------------------------------------------SS--------------S-----------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------S-S-S-S-S--S-SSSS-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------S-----------------------------------------------------------
-S--SSS--------------------SS-----SSS------------------------------------------S
-----------SSSSSS----S--------------S----------------------------------S--------
--------------------S------------------------------------------SSSS-SSSSSSS-----
-------------------------------------------------------------------------------S
----------------------------------S----------SS-S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------S------------SS---S-------------------------------------------------S---
--S--------------------------------------------------------SS--SSSS--S---S------
-S----S-------------------------------------------------------------------------
----------------------------------------------------------------
>forward_1005
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-------------------------ACAGATTCGCTCAGCACAGG-----------------------------------
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>reverse_2243
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--GAGGGACTACAGCATCCACG----------------------------------------------------------
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>forward_1268
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------------------------------------------------TCGAGATGCATGGCAATGGA------------
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>reverse_2699
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----------------------------------------------------------CGATCCAAGTTGTGATGGCC--
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>forward_2689
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GTCTCGCAGCACGTAAGAGT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>reverse_3589
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GCAGCTCAGAAC
CACATCCA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
