>input_sequence_41444
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-----------------------------------------------------------------ATGGCTCCTCATGCT
CTCCTGTCTCCGGAGTCCCGCAGCCGCGCTGCCATCCTGCCACTGCTACGCATACTGTGAGTTGATCGATCGAGGAGAAA
AGATGGCACGCTTTCTTGGTTAAGTACGTCTGGATTTTGGACTCACGATCATGGTGCATGTACGTACGTTGTTGTTTTGC
AGAGAAGATCATGGCGCTGAGGCGCGGAAGAGCCGGCCGGCGGCGACCGCCTCCAAGGCCGGCAGGAAGAAGAA---GGT
GCTGGTGCTGACCGCGGTGGTGTCCGTCGTGCTCATGTTTGCCCTCCTCAAGACCAGAACCCTCGACGGCCGGGTATTAC
TCCGTCATCGTCCAGCTACTGTGATTAGTGTTCCACGGCCCCCCTACGCCGCGCACCGGCGCGTCCAGTGGGACAGCGTC
ACTGCCTCCCTGGTGGCGGCGCAGGCGGGGTCGGTGGCGCTGCTCAACTTCAGCCCGGCGGAGGTGAAGCGGTGGAGGAA
GCTGCAGCCACTCCACAC---GACAGTCCGAGCGGTGCGGTTGCAGCCCGTGGACAGCGCCGTCACCTGGGCCGCCCTCT
ACCCGGAGTGGATCGACGAGGACGGTAACGGCACCAACAGCGGCAGCTGCCCCTCACTCCCAGACCCCGAGGATCAAGGA
GGCCAGCGCTTCGACCTCGTCGCCGTCAACCTCCCCTGCCGCAGCCGTAACGATAGCGGCCGCTGGTCCAGGGACGTGGC
CAGGCTCCATCTCCAGCTCTCCGCCGCCAAGCTCGCCGTCTCCGTCCAGTCGTCGCATGTCCTCGTCGTCTCTGATTGCC
TCCCACTCCCCAACCTCTTCCCATGCAAGCACCTCTTCCACCAACACGGCCACGCCCGGCTCTACAGGGCTCACGCCGCC
TACCTCCGCCCCCGCACCCGCCTCCCCGTCGGCTCATGCGACCTCGCTCTACGTCTTCCGACGATTCCTATGAAGCCGCT
TACGGTGCTCAGGCGGCGGCGGGAGGCGTACGCGACGGTGCTGCACTCGTCGGACGCCTACGTGTGCGGCGCCATCGCGG
TGGCGCAGAGCATCCGTCAGTCGGGCTCCACCAGGGACCTGGTG------------------------------------
---GCGCTGGTGGACTACGGCAGCGTCGGCGCCGAGCAGCGCGCCGGCCTGGCTGCGGCCGGGTGGCAGGTGCGCACCAT
GGACGGCCGCATCCGCAACCCGCGCGCCGTGCCCGGCACGTACAACGAGTGGAACTACAGCAAGCTCCGCCTGTGGCAGC
AGCTCACCGACTACCGCAGGGTCGTGTTCGTGGACGCCGACCAGCTCGTGCTGCGAAACATCGACTTCCTCTTCGACGCC
CCGGAGGTGAGCGCCACCGGGAACAGCCGGACGCTCTTCAACTCCGGCGTCATGGTGCTGGAGCCCTGCAACTGCACGTT
CGACATGCTCATGGCGCGCGTCCGCGACG---------TCCGGTCGTACAACGGCGGCGATCAGGGGTTCCTCAACGAGG
TCTTCACGTGGTGGCACCGCCTGCCGCGCACCGTCAACGTCCTAAAGTACTACCACCAACAGGGCCATGCTGCT------
GCTGCTGCCTCGGCGCCGCCGTCGCCGGAGCCGTACCTGCTGCACTACCTGGGCATCAAGCCGTGGCTGTGCTTCCGCGA
CTACGACTGCAACTGGAACGTGCCGTCGCTGCGCCAGTTCGCCAACGACGAGGCGCACGCGCGGTGGTGGGCCGTGCACG
ACAGGATCAAGCCGGGGGAGCTCGCCGCTAGGTTCTGCGCGTTGCCGAAGAGTCAGAGGTCGTCGCTGCAGTATGAGCGG
AGGCAGGCGGAGAAGGCCAACGCCACCGACATGCACTGGAGCCGTCCGATCACTGACCCAAGGAACACCCAACAACTCTT
GTTGCCAATGCCACCCACCGCATGA-------------------------------------------------------
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>chr3D_1_TraesCS3D01G374500
GTCTTATATTAATTTAGAGAGAGAGTAGTTGGGGTATTGAAGTTGGATGTGAACTAA-AGATGTAACACGCGCGCAGTCA
CCGATCCACGTCAAATAAACCGAACTATCTGTTGCCATGCGATAATCAATTAGGAGTCACAATCATACAATTATGATCGA
TGCCATGGTGCTAGAGCTAGCTAGACAGGC-----GAGGTGAGGTGAACAATACGAGATTTGTTACCAAACCTACAATTC
CCATCTGCACCAAACCTGGAAGAAAA-GTACGTACCACATCCACTGGTCTACATGGATGGAGCAAGACCTCCTCAATGTT
AGTTGCATAGCTTGTACTACTACTAGATAGATATACAAGTACGCAGTATCCATTGACATAGTCTCTCTTCTCCCTCCTCT
TCTGCACTAGTGCCAACTGCCACAACCAGCTGGCCTTGACCAAGCAAATCAAATCATGTTCTTACTA----TACTATGCA
TCAAGACAAGCTAGCACTTTTCAGAAAAG--AAAAAAGAAGCGAACTACAAAGCACAGTTTTTTT-----AAGCCGGAGA
AGAACTTGGAAAGATCGATGTTAGTCGGAGCTCTAGCTCGCCTGAATGTAGCCAAATGGCTGCCATTTAGTAGTTAATTA
TCCGGCCAGGCCTATCGAGACATCGAGGTCAGGATTAATCTCCAAATGTCGTGAGTTAGACCACGGCCTACCTATCACTC
TTGTAATCACATGATTAATCACCTCCAACTTAGTCAAAGACATGAGACAAACTGAAAACCACGGTTGTACGTGGAGGCAT
CGATGGATACATATAT------AGTGTGGCTTGAGAGATAGAGCGCAGCAAAGGCTAGCTTAACCATTC-CCAGCCAGCC
AGGGCCAGGCTGCATGCACGTACGCTATACCTATGCAGATCGGATGAGATCGTCGACCAGCAGCTAGCTAGCTACTCCGC
CGGCCCGCGATCGTGCGTGGAGAACTAAGCAGGGCATGCACGGGCCGAGTGATCGGAAGGAAAAGATGGCTCCTCATGCT
CTCCTGTCTCCGGAGTCCCGCAGCCGCGCTGCCATCCTGCCACTGCTACGCATACTGTGAGTTGATCGATCGAGGAGAAA
AGATGGCACGCTTTCTTGGTTAAGTACGTCTGGATTTTGGACTCACGATCATGGTGCATGTACGTACGTTGTTGTTTTGC
AGAGAAGATCATGGCGCTGAGGCGCGGAAGAGCCGGCCGGCGGCGACCGCCTCCAAGGCCGGCAGGAAGAAGAA---GGT
GCTGGTGCTGACCGCGGTGGTGTCCGTCGTGCTCATGTTTGCCCTCCTCAAGACCAGAACCCTCGACGGCCGGGTATTAC
TCCGTCATCGTCCAGCTACTGTGATTAGTGTTCCACGGCCCCCCTACGCCGCGCACCGGCGCGTCCAGTGGGACAGCGTC
ACTGCCTCCCTGGTGGCGGCGCAGGCGGGGTCGGTGGCGCTGCTCAACTTCAGCCCGGCGGAGGTGAAGCGGTGGAGGAA
GCTGCAGCCACTCCACAC---GACAGTCCGAGCGGTGCGGTTGCAGCCCGTGGACAGCGCCGTCACCTGGGCCGCCCTCT
ACCCGGAGTGGATCGACGAGGACGGTAACGGCACCAACAGCGGCAGCTGCCCCTCACTCCCAGACCCCGAGGATCAAGGA
GGCCAGCGCTTCGACCTCGTCGCCGTCAACCTCCCCTGCCGCAGCCGTAACGATAGCGGCCGCTGGTCCAGGGACGTGGC
CAGGCTCCATCTCCAGCTCTCCGCCGCCAAGCTCGCCGTCTCCGTCCAGTCGTCGCATGTCCTCGTCGTCTCTGATTGCC
TCCCACTCCCCAACCTCTTCCCATGCAAGCACCTCTTCCACCAACACGGCCACGCCCGGCTCTACAGGGCTCACGCCGCC
TACCTCCGCCCCCGCACCCGCCTCCCCGTCGGCTCATGCGACCTCGCTCTACGTCTTCCGACGATTCCTATGAAGCCGCT
TACGGTGCTCAGGCGGCGGCGGGAGGCGTACGCGACGGTGCTGCACTCGTCGGACGCCTACGTGTGCGGCGCCATCGCGG
TGGCGCAGAGCATCCGTCAGTCGGGCTCCACCAGGGACCTGGTG------------------------------------
---GCGCTGGTGGACTACGGCAGCGTCGGCGCCGAGCAGCGCGCCGGCCTGGCTGCGGCCGGGTGGCAGGTGCGCACCAT
GGACGGCCGCATCCGCAACCCGCGCGCCGTGCCCGGCACGTACAACGAGTGGAACTACAGCAAGCTCCGCCTGTGGCAGC
AGCTCACCGACTACCGCAGGGTCGTGTTCGTGGACGCCGACCAGCTCGTGCTGCGAAACATCGACTTCCTCTTCGACGCC
CCGGAGGTGAGCGCCACCGGGAACAGCCGGACGCTCTTCAACTCCGGCGTCATGGTGCTGGAGCCCTGCAACTGCACGTT
CGACATGCTCATGGCGCGCGTCCGCGACG---------TCCGGTCGTACAACGGCGGCGATCAGGGGTTCCTCAACGAGG
TCTTCACGTGGTGGCACCGCCTGCCGCGCACCGTCAACGTCCTAAAGTACTACCACCAACAGGGCCATGCTGCT------
GCTGCTGCCTCGGCGCCGCCGTCGCCGGAGCCGTACCTGCTGCACTACCTGGGCATCAAGCCGTGGCTGTGCTTCCGCGA
CTACGACTGCAACTGGAACGTGCCGTCGCTGCGCCAGTTCGCCAACGACGAGGCGCACGCGCGGTGGTGGGCCGTGCACG
ACAGGATCAAGCCGGGGGAGCTCGCCGCTAGGTTCTGCGCGTTGCCGAAGAGTCAGAGGTCGTCGCTGCAGTATGAGCGG
AGGCAGGCGGAGAAGGCCAACGCCACCGACATGCACTGGAGCCGTCCGATCACTGACCCAAGGAACACCCAACAACTCTT
GTTGCCAATGCCACCCACCGCATGATTCTACCCGC-TTGCTTGTACCTATGGTGTTTTTGTAAATTTGATTGATATTTCT
ACGGATATTTCTAATCATTTCACAGCGGGTGAATATTTGTGAATTGCTTTA---AAATCTGACGCCAATCGATTTTCCTA
GCCGTTGGATTGCAATCATCCAATGGCCCAGCTCCCGCTCTTGCTCCCAACCCCTCTCTCCTTCTTGGTGAGCACCC---
TCCTCGTCCTCCTCTTCCGGACGCTCACCGCTGGCCACGACATCCCTGTCTTGGGCGAGGTCCTATCCCGG---------
GACGCCGTGGCCAGCCAATTATATTTGTCTCACCCTCAGAGCTCCGTGTGAACCTCACTTCTTCTCCCAGAAAACCGACT
AATGTCACTCGCTTTTCCACGCGACTTACAAATAACAAATACACATTTATAATTCTACGAACATCATCAAGTCTAGAGTG
TTGGCTGCCCTTAAATTCGTGCACACATGCGATGGAAGGGTGTGGGATGGCAGCGGTCCTCGATCCGTTTTGTGCGCTGG
TAACAGCAGGGTGACATGGCATGATGCATGTTAGGAATTAGATTTATATGAACGCTGATGTGGCATGAAGCTGGTGTGGA
TAGTGTGCATGTTGAGAGAATTGGTTATAGTGGGGAGCAACTTCTTAAGAGTGTAAGATATGACTAAATGATGAAATGCA
GCAACCTTGATTGAGACAATTACTCATCAGTTATCTTGGCAACAAAATAGCACCACCTTAAAGCCAATGGTCTATATAGT
AAATAACCATGGCAAAACCCATGACGTTTATCTACGTGCCGTAATACGGCTTTGAATGTGACCTACAACTTAGTTGGAGG
ATACCATAAAAGATCGAGCAAACCAACGAGATTTAACAACATGGTCATGCCTCCAACGCAACCACAGGTCGTGAGACTGC
TGAATTATCAACAAAAAAAAAACTAAATGAGGCGACAAAAAACAGTTTCAATCGATTCAGAAACTAATGCTTGGAGCAGC
T
>chr3A_1
GTCTTATATTAATTTACAGAGAGAGTAGTTGGCGAATTGAAGTTGGATGTGAACTAAAAGATGTAACACGCGTGCAGTCA
CCGATCCACGTCAAATAAACCGAACTATCTGTCACGGTGCGATAATCAATTAGGAGTCACAATCATACAAATATGACCGT
TGCCATGGTGCTACAGCTAGCTAGACAGGTGAGGTGAGGTGAGGTGAACAATACGAGATTTGTTACCAAACCTACAATTC
CCATCTGCACCAAACCTGGAAGAAAACGTACGTACCACATGCACTGGTCTACATGGATGGAGCAAGACCTCCTCAATGCT
AGTTGCATAGCTTGTACTACTACTAGATAGATATACAAGTACGCAGTATCCATTGACATAGTCTCTCTTCTCCCTCCTCT
TATGCACTAGTGCCAACTGCCACAATCAGCTGGCCTTGACCAAGCAAAGCAAAGCAATGCAAATCATGTACTACTATGCC
TCAAGACAAGCTAGCACTTTTTCAGAAAAGA-AAAAAGAAGCAAACTACTACAAAGCGCAGGTATTTTTAAAGCCGTGGA
GGAACTTGGAAAGATCGATGTTAGTCGGAGCGCTAGCTCGCCTGAATGTAGCCAAATGGCTGCCATTTAGTAGTTAATTA
TCCGGCCAGGCCTATCGGGATATCGAGGTCAGGATTAATCTCCAAATGTCGTGAGTTAGACCACGGCCCACCTATCACT-
-TGTAATCACATGATTAATCACCTCCAACTTAGTCAAAGACACGAGACAAACTGAAAACCACGGTTGTACGTGGAGGCAT
CGATGGATACATATACATATACAGTGTAGCTTGAGAGATAGAGCCAAGCAAAG----GCTTAACCATTCCCAGCCAGCCA
-----------------------------------------GGATGAGATCGTCGAT---CAGCTAGCTAGCTACTCCGC
CGGCCCGCGATCGTGCGTGGAGAACTAAGCAGGGCGTGCAAGGGCCGAGTGATCGGAAGGAAAAGATGGCCCCTCACGCT
CTCTTGTCTCCGGAGTCCCGCAGCCGCGCTGCCATCCTGCCACTGCTACGCATACTGTGAGTTGATCGATCGAGGAGAGG
AGATGGCACGCTTTCTTGGTCAAGTACGTCTGGATTTTGGACTCACGATCATGGTGCATGTACGTACGTTATTGTTTTGC
AGAGAATATCATGGCGCGGATGCGCGGAAGAGCCGGCCGGCGGCGACCTCCTCCAAGGCCGGCAGGAAGAAGGTGCTGGT
GCTGGTGCTGACCGTGGTGGTGTCCGTCGTGCTCATGTTCGGCCTCCTCAAGACCAGAACCCTCGACGGCCGGATATTAC
TCCGTCATCGTCCAGCTCCTGTGATTAGTGTTCCACGGCCCCCCTACGCCGCGCACCGGCGCGTCCGGTGGGACAGCGTC
ACCGCCTCCCTGGTGGCGGCGCAGGCGGGGTCGGTGGCGCTGCTCAACTTCAGCCCGGCGGAGGTGAAGCGGTGGAGGGA
GCTGCGGCTACCCGGAGCAGTGACAGTCCGAGCGGTGCGGTTGCAGGCCGTGGACAGCGCCGTCACGTGGGCCGCCCTCT
ACCCGGAGTGGATCGACGAGGACGGTAACGGCACCAGCAGCGGCAGCTGCCCCTCACTCCCAGACCCCGAAGATCAAGGA
GGCCAGCGCTTCGACCTCGTCGCCGTCAACCTCCCCTGCCGCAACCGTAACGATAGCGGCCGCTGGTCCAGGGACGTGGC
CAGGCTCCATCTCCAGCTCTCCGCCGCCAAGCTCGCCGTCTCCGTCCACTCGTCACACGTCCTCGTCGTCTCGGACTGCC
TCCCACTCCCCAACCTCTTCCCATGCAAGCACCTCCTCCACCGACACGGCCACGCCCGGCTCTACAGGGCTCACGCCGCC
TACCTCCTCCCCCGCACCCGCCTCCCCGTCGGCTCATGCGACCTCGCCCTACGTCTTCCGACGAGTCCTACGAAGCCGCC
TACAGTGCTCAGGCGGAGGCGGGAGGCGTACGCGACGGTGCTGCACTCATCGGACGCCTACGTGTGCGGCGCCATCGCGG
TGGCGCAGAGCATCCGGCAGTCGGGCTCCACCAGGGACCTGGTG------------------------------------
---GCGCTGGTGGACTACGGCAGCGTCGGCGCGGAGCAGCGCGCCGGCCTGGCTGCGGCCGGGTGGCAGGTGCGCGCCAT
GGACGGCCGCATCCGCAACCCGCGCGCCGTGCCCGGCACGTACAACGAGTGGAACTACAGCAAGCTCCGCCTGTGGCAGC
AGCTCACCGACTACCGCAGGGTCGTGTTCGTGGACGCCGACCAGCTCGTGCTGCGCAACATCGACTTCCTCTTCGACGCC
CCGGAGGTGAGCGCCACCGGGAACAGCCGGACGCTCTTCAACTCGGGCGTCATGGTGCTGGAGCCGTGCAACTGCACGTT
CGACATGCTCATGGCGCGCGTCCGCGACG---------TCCGGTCGTACAACGGCGGCGACCAGGGGTTCCTCAACGAGG
TCTTCACGTGGTGGCACCGCCTGCCGCGCACCGTCAACGTCCTGAAGTACTACCACCAACAGGACCATGCTGCT------
CCTGCTGCCTCGGCGCCGCCGTCGCCGGAGCCGTACCTGCTGCACTACCTGGGCATAAAGCCGTGGCTGTGCTTCCGGGA
CTACGACTGCAACTGGAACGTGCCGTCGCTGCGCCAGTTCGCCAACGACGAGGCGCACGCACGGTGGTGGGCCGTGCACG
ACCGGATCAAGCCGAGGGAGCTCGCCGCCAGGTTCTGCGCGTTGCCGAAGAGTCAGAGGTCGTCGCTGCAGTATGAGCGG
AGGCAGGCGGAGAAGGCCAACGCCACCGACATGCACTGGAGCCGTCCGATCACTGACCCAAGGAACACCCAACAACTCTT
GTTGCCAATGCCACCCACCGCTTGATTCTATCCGCTTTGCTTGTACCTATGGTGTTTTTGTAAATTCGATTGATATTTCT
ACGGATATTTCTAATCATTTCACAGCGGCTGAATATTTGTGAATTGCTTTAGAAAAATCTGACGCCGATAGATTTTCCTA
GCCGTTGGATTGCAATCATCCAATGGCCCAGCTCTCACTCTTCCTCCCAACTCCTCTCTTCTTCTTGGTGAGCACCCTCC
TCCTCTTCATCCTCTTCCGGACGCTCACCTCTGGCCGCGACATCCCTGTCTTGGGCGAGGTCCTATCCTGGTCTGGTTGG
GACGCCGTGGCCAACCTATTGTATTTGTCTCACCCTCAGAGCTCCACGTGAACCTCA---CTTCTCCCAGAAAACCGACT
AATGTCACTCGCTTTTCCACACGACTTACAAATAACAAATACACATTTATAATTCTACGAACATCATCAAGCCTAGAGTT
TTGTATGA------------------------------------------------------------------------
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---------------------------------------------------------ATATGACTAAATGATGAAATGCA
GAAACCTTGATCGAGACAATTACTCATCAGTTATCTTGACAACAAAATAGCACCACCTTAAAGCCAATGGTATATATAGC
AAATAACCATGACAAAACCCATGACACTTATCGACGTGCCATACTACGACTTTGAATGTGATCTACAACTTAGTTGGAGG
ATACTGTAAAAGATGGACAAAACCAACGAGATTAAACAACATGGTCATGCCTCCAACGCAACCACGGGTCATGAGACTGT
TGAACTATCAACAAGAAA--------------------------------------------------------------
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>chr3B_2
-TCTTATATTAACTTAAAGAGAGAGTAGTTGGCGAATTGAAGTTGGATATGAACTAA-AGATGTAACACGCGTGCAGTCA
CCGATCCACGTCAAATAAACCGAACGATCTCTCACGGTGCGATAATCAATTAGGTGTCACAATCAGACAAATATGGTCGA
TGCCATGGTGCTACAGCTAGCTAGACAGGTGAGGC-----GAGGTGAACAATACAAGATTTGTTACCAAACCTACAATTC
CCATCTGCACCAAACCTGAAAGAAAAAGTACGTACCACATCCACTGGTCTACATGGATGGAGCAAGACCTCCTCAACGTT
AATTGCATAGCTTGTACT------AGATAGATATACAAGTACGCAGCATCCATTGACATAGTCTCTCTTCTCCCTCCTCT
TCTGCACTAGTGCCAACTGCCACAACCAGCTGGCCTTGGCCAAGCAAATCAAATCATGTACTTAATA----TACTATGCA
TCAAGACAAGCTAGCACTTTTTCAGAAAAGAAAAAAAGAAGCAAACCACAAAGCACAGTTTTTGT-----AAGCCGGGGA
GGAACTTGGAAAGACCGATGTTAGTCAGAGCTCTAGCTCGCCTGAATGTAGCCAAATGGCTGCCATTTAGTAGTTAATTA
TCCGGCCAGGCCTATCGGG-TATCGAAGTCAGGATTAATCTCCAAATGTCGTGAGTTAGACCACGGCCTACCTATCACT-
-TGTAATCACATGATTAATCACCTCCAACTTAGTCAAAGACATGAGACAAACTGAAAACCACGGTTGTACGTGGAGGCAT
CGATCGATACATATAT------AGTGTGGCTTGAGAGATAGAGCGAAGCAAGG----GCTTAACCATTCCCCAGCCAGCC
AGGGCCAGGCTGCATGCACGTACGCTATACCTATGCAGATCGGATGAGATCGTCGAC---CAGC-AGCTAGCTACCCCGC
CGGCCCGCGATCGTGTGTGAAGAACTAAGC----------AGGGCCGAGTGATCGGAAGGAAAAGATGGCTCCTCATGCT
CTCTTGTCTCCGGAGTCTCGCAACCGCGCTGCCATCCTGCCACTGCTACGCATACTGTGAGTTGATCGATCGAGGAGAAA
AGATGGCATGCTTTCTTGGTTAAGTACGTCTGGATTTTGGACTCACGATCATGGTGCATATACGTACGTTGTTGTTTTGC
AGAGAAGATCATGGCGCAGATGCGCGGAAGACCAGGCCGGCGGCCGCCACCTCCAAGGCCGGCAGGAAGAAGAA---GGT
GCTGGTGCTGACCGTGGTCGTGTCCGTCGTGCTCATGTGCGCCCTCCTCAAGACCAGAACCCTAGACGGCCGGATATTAC
TCCGTCATCGTCCAGCTCCTACGATTAGTGTTCCACGGCCCCCCTACGGCGCGCACCGGCGCGTCCGGTGGGACAGCGTC
ACCGCCTCCCTGGTGGCGGCGCAGGCGGGGTCGGTGGCGCTGCTCAACTTCAGTCCGGCGGAGGTGAAGCGGTGGAGGAA
GCTGCAGCCACTCCACAC---GACAGTCCGGACGGTGCGGTTGCAGGCCGTGGACAGCACCGTCACCTGGGCCGCCCTCT
ACCCGGAGTGGATCGACGAGGACGGTAACGGCACCAGCAGCGGCAGCTGCCCCTCACTCCCGGACCCCGAGGATCAAGGA
GGCCGGCGCTTCGACCTCGTCGCCGTCAACCTCCCGTGCCGCAGCCGTAACGATAGCGGCCGCTGGTCCAGGGACGTGGC
CAGGCTCCATCTCCAGCTCTCCGCCGCCAAGCTCGCCGTCTCCGTCCAGTCGTCGCATGTCCTCGTCGTCTCTGACTGTC
TCCCACTCCCCAACCTCTTCCCATGCAAGCACCTCTTCCACCAACACGACCACGCCCGGCTCTACAGGGCTCACGCTGCC
TACCTCCGCCCCCGCACTCGCCTTCCCATTGGCTCATGCGACCTCGCTCTACGTCTTCCGACGATTCCTATGAAGCCGCT
TACGGTGCTCAGGCGGCGGCGGGAGGCGTACGCGACGGTGCTGCACTCGTCGGACGCTTACGTGTGCGGCGCCATCGCGG
TGGCGCAGAGCATCCGGCAGTCGGGCTCCACCAGGGACCTGGTG------------------------------------
---GCGCTGGTGGACTACGGCAGCATCGGCGCGGAGCAGCGCGCCGGCCTGGCGGCAGCGGGGTGGCAGGTGCGCGCCAT
GGCCGGCCGCATCCGAAACCCGCGCGCGGTGCCCGGCACGTACAACGAGTGGAACTACAGCAAGCTCCGCCTCTGGCAGC
AGCTCACCGACTACCGCAGGGTCGTGTTCGTGGACGCCGACCAGCTCGTGCTGCGCAACATCGACTTCCTCTTCGACGCC
CCGGAGGTGAGCGCCACCGGGAACAGCCGGACGCTCTTCAACTCCGGCGTCATGGTGCTGGAGCCCTGCAACTGCACGTT
CGACATGCTCATGGCGCGCGTCCGCGACG---------TCCGGTCCTACAACGGCGGCGACCAGGGGTTCCTCAACGAGG
TCTTCACGTGGTGGCACCGCCTGCCGCGCACCGTCAACGTCCTAAAGTACTACCACCAACAGGGCCATGCTGCTAGTGCT
CCTGCTGCCTCGGCGGCGCCGCAGCCGGAGCCGTACCTGCTGCATTACCTGGGCATCAAGCCGTGGCTGTGCTTCCGCGA
CTACGACTGCAACTGGAACTTGCCGTCGCTGCGCCAGTTCGCCAACGACGAGGCGCACGCGCGGTGGTGGGCGGTGCACG
ACCGGATCAAACCGAGGGAGCTCGCCACCAGGTTCTGCGCGTTGCCGAAGAGTCAGAGATCGGCGCTGCAGTATGACCGG
AGGCAGGCGGAGAAGGCCAACGCCACCGACATGCACTGGAGCCGTCCGATCACTGACCCAAGGAACACCCAACAACTCTT
GTTGCCAATGCCACCCACCGCATGATTCTATCCGC-TTGCTTGTACCTATGGTGTTTTTGTAAATTTGCT----------
-----------------------------------------------TTTAGAAAAATCTGACGTCGGTCGATTTTCCTA
GCCGTTGGATTGCAATCATCCAATGGCCGAGCGTCTCGTTCTACTCCCAACCCCTCTCTTCTTCTTCCTGAGCACCCTCC
TC------------TTCCGCCCGCTCACCGCTGGCCACAGCATCCCTGTCTTAGGCGAGGTCCTATCCCGGTCTGGCTGG
GACGCCGTGGCCAGCCTATTGTCTTTGTCTCACCCTCAGAGCTCCGCATGTACCTCA---CTT-----------------
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>chr4D_1979
CAGCCA--------------------------------------------------------------------------
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---------------GCGGCGCGAGGCGTACGCGACGGTGCTGCACTCGTCGGACCGGTACCTGTGCGGCGCCATCGTGC
TGGCGCAGAGCATCCGGCGGTCGGGCTCCACCCGCGACATGGTCCTCCTCCACGACCACACCGTCTCCAAGCCGGCCCTC
CGCGCGCTGGTCGCCGCCGGCTGGATCCCGCGCAGGATCCGG--------------------------------------
-------CGCATCCGCAACCCGCGCGCGGAGCGGGGCTCCTACAACGAGTACAACTACAGCAAGTTCCGGCTGTGGCAGC
---TGACGGAGTACTTCCGCGTCGTCTTCATCGACGCCGACATCCTTGTCCTCCGCTCCCTCGACGCGCTCTTCCGCTTC
CCGCAGATCTCCGCCGTGGGCAACGACGGCTCCCTGTTCAACTCCGGGATCATGGTGCTCGAGCCGTCCGCGTGCACGTT
CGA---------GGCGCTCGTCCGCGGGCGGCGCACCATCCGGTCCTACAACGGCGGCGACCAGGGGTACCTGAACGAGG
TGTTCGTGTGGTGGCACCGACTGCCGCGC---------------------------------------------------
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>SNPs
----------------S---------------S-S-------------------------------------S-------
--------------------------------SS-SS---------------------------------S---------
-------------S---------------S--------------------------------------------------
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-----------------------------------------------------------S--------------------
---------------------SSSS---S-------------S--------------------S-------------S--
S-------------------------------------------------------------------------------
-----------------S--S----------------------------------------------------------S
S-------------------------------------------------------------------------------
---------------------------------------------S-------SSSS-----------------------
---------------------------------------------------------SSS--------------------
-----------------------------------S----S---------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S--S---------------------------S-------------------------------
--------------S------------------------S---------------------------------S------
-----------------S------------------------------------------------S-------------
--S-----------------------------------------------------------------------------
----------------------------------------------S---------------------------------
------------------------------------S-------------------------------------------
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---------------------------------------------------------------------------S----
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----------------S---------------------------------------------------------------
---------------------------------------------------------------------------S----
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-------------------------------------------------------S------------------------
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------------------------------------------------------------S-------------------
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S-------------------------------------------------------------------------------
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--S-----------S-------------S---------------------------------------------------
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------------------------------S-------------------------------------------------
----------------------------S-------------------------------------S-------------
------------------------------------S-----S----------------S--------------------
-----S--S-----------------------------------------------------------------------
----------------S---S-------------------------S----------SSS--------------------
--------------------S--------------------------------------------------S-------S
---SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-S---------S--------------------------S--------------------------------S-------S
-----------S-------------SS-----S-------S--S----S------------S------------------
----SS--------S--SS--------------S-------------------------------S----S--------S
----S---------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_940
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----------------------------------------CGGATGAGATCGTCGACCAG--------------------
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>reverse_2991
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------------------------------CCCGCTTGCTTGTACCTATG------------------------------
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