>input_sequence_41441
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--------------------------------------------------ATGGGAGGAGAGCCCCTCCTCACCTCCCTC
TCCATGGAGAACAGCAACAGCCATCCCTGCACCCTCCTCTCCATGGACCCGGCGGGGTCGCACCCGGCCTCAGCCGAGTC
ATCCGGCGGTGG------CGGCGCCGTCAACGGGGTTGGCGCCAGTGCTGACAGGGAACTCTTCATCATTCCGCGGCACG
AGTCTGTGCGTCAAGGCCCGCCGGACATCAACGTCCCGCTGTCAGCAGACCCCTCCCCGCCGCCTGCATTGTGGAGCCTT
GACACGTTCGACATTTTCGATGTCGGCCTTGGCACGCACACCCATGAGTCTGAGGTTGCGCTGACCCTTCCAAAGTCGAG
CGGCAATGGCAGTGCCGCAGTCGGCGTCGGCGCGAGGAAGTGCGCCAAGAGGGGGGACAGCATTTGGGGAGCCTGGTTCT
TCTTCAATCACTACTTCAGGCCTGCACTCGTGGAGAAGGCAAAGGAGAAGGTGACGCGGGACGCATCTGGGAGCATCACC
GGCTTTGACAAGTCCGATCTCCGTCTTGATGTCTTCCTGGTGCAGCATGACATGGAGAACCTGTACATGTGGGTTTTTAA
GGACCGGCCTGACAATGCCCTTGGGAAGATGCAGCTCCGGAGTTTCATGAATGGGCATTCCAAGCACGGGGAGCCATCTT
TTCCGTTCAGTGCGGACAAGGGCTTTTCGAGGTCACACCGCATGCAGCGAAAGCACTACCGTGGTCTGTCCAACCCACAG
TGCCTTCATGGGATTGAGATTGTGAACTCACCAAACTTGTCGGCAGTTCCTGAGGCTGACATGAAGAGGTGGGCTGAGCT
TACAGGAAGGGAGCTTAATTTCTCAGTACCATCTGAAGCGAGTGACTTTGAGTCATGGAGAAATCTTCCAAGCACTGATT
TTGAACTTGATAGGCCACAGCCAGCAGCGTCAAAGACCGTCCCACATACCTCTCATAATAATAATCACAAGAAGGCACTG
AATGGTTCAGGTCTGAATCTATCTACACCACCGTCATCAGACGATGGGATGGACCTTTCACCAAAGTGCCACAAACGCCG
CAAGGACTTCTTTGGTCATGGCGTAGAAGAGGATTGTGCAATGGCCAATAATTCCTGTTCCGAGAGGGAGCAAGAGGTTG
AAGTACACACCGGTGAGCCGTCATGGATGCATGACTTCACTGGCGTGGCAAAGCACGCAAGTGGGCCTGTTACTGCTGCC
AAGACGATATACGAGGATGATGAAGGCTACCTGATAATGGTGAGCATGCTCTTATCCGATCCACACAGCGTGAAGGTCAC
CTGGAGGAACACGCTGACGCATGGCGTCGTGAAGATAACATGTGTGAGCACCGCCCGCATGCCCTTCATCAAGAGGCACG
ACAGGACCTTCAAGCTGACCGACCCTTCCCCTGAGCACTGCTCTCCCGGCGAGTTTGTGAGGGAGATACCTCTGGCCACA
AGGATCCCAGAGAACGCCAAGATCGAAGCGTATTACGACGAGACCGGCACTGGACTGGAGATCATGGTACCGAAGCACCG
GGTCGGGCCAGAGGAGCATGAAGTTCAGGTTTGCATGAGGCCCCCGCATCTTGGCGACAATGATCTCGTTTTATCATAAT
AGAACAGGAAAAAAAACATTTTAGCCTCTTACTAGGT-CATCCGGTGTCATGCCATGAGGCACCGGAGCATAGCAGCAAA
GCTATCATCATGCCATGGATCAAAAATCGGAAATTTTCTTTCGGCACTGAACATTAGTCGCACTTATCTGTCTGTCTGTC
TCCCTTAGGCGGAAAATTACCTCTTCCTCCTCTGTTAATTCCCCTCTGTACTTTCTTTCTATACAGGTGCTACATCACTA
CATTGGTGGTGATCCCCTTGACTATTCCTTTCTGTGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>chr3A_1_TraesCS3A01G075600
CACGCTCATTTTTTAAGGTAATGTCGACACAAATATCAATGCAAGAAATTTTACACGGTAGAAATCACCCAAAGAAACAG
GCTCCAAAAAATTCGAACAGATTTTGA-GAAATTTAAGTAAAATTCAATCGAGTTTATATTACATGCCAAAAAAAAAAGT
ATAAAC------GGGGAAAACGCGGTTGCAGGCTGCGACCCGCAAGGCCGCAACGAGACGAGACCCGAACCCGCTGACGC
CACGCCTCGACCGACCACCCCACCCCTCTTCTTCTTTGGCTGGCCCGCCCCT-CTCCCTCTCCTCTCTCTTCCCCTCCTC
TTCCCCTCTTCCGCCCCACCCCCGCGTCTCCGGCGAGGGCTCAGGCCGCGGCCCCGCCGACCCGCGCACCTTCCTTGCGA
GAGCGCCTCCTCCACGGGAACAGCGGCCTCGCGGGAGCTCCCT--TCTCCCCTCCCCAAGGTTAGAACAGATCAGAGCAA
GGTCTCCGGCTCATCTTTTTCATTCTCGGCGGCGATTCTTGGGGTGCTAGTGGGATTCGCCAGGTTTACTTCGGCATGAT
TCGAGAGCAGATTGGTTCCTCCGGGTGAAATTTTGTTGAACCTGTAGGTATCTACGGAGAAATCGGCTTTGCTTAGAACA
GAAAGAGGGCTCAAGATTTCAGTACTAATTCGCATGCTGTTAATGGCGTTCGTTCATTTGACGATTGTGAGAAGTAACTT
TTGTTCCCCGTCAATCAATTCGCAGGTCTGCGGCGCCGGATTGGCCTCATCAGCTCGAAGATCTCGAACTTGTTTCCAAG
CAAGGAAGGAACCCTCGTCGCAAATCTCGATCTGTGGATTGGTGGGCAGAAAGACTCGCCTTTTATGGGGCAGCCCCGTG
AGAAACCCGTGCCATGATTGGGGCGTCAGGGGAGGAGAGGCAGTGGTAGGAGGAGGTGCAGCAGGAGGCAGGAGAAAAAG
AGCAGGCAAGGATAGGCAGGACCAAGGACAAGGAGAGGAGGGAGCTCTCCATGGGAGGAGAGCCCCTCCTCACCTCCCTC
TCCATGGAGAACAGCAACAGCCATCCCTGCACCCTCCTCTCCATGGACCCGGCGGGGTCGCACCCGGCCTCAGCCGAGTC
ATCCGGCGGTGG------CGGCGCCGTCAACGGGGTTGGCGCCAGTGCTGACAGGGAACTCTTCATCATTCCGCGGCACG
AGTCTGTGCGTCAAGGCCCGCCGGACATCAACGTCCCGCTGTCAGCAGACCCCTCCCCGCCGCCTGCATTGTGGAGCCTT
GACACGTTCGACATTTTCGATGTCGGCCTTGGCACGCACACCCATGAGTCTGAGGTTGCGCTGACCCTTCCAAAGTCGAG
CGGCAATGGCAGTGCCGCAGTCGGCGTCGGCGCGAGGAAGTGCGCCAAGAGGGGGGACAGCATTTGGGGAGCCTGGTTCT
TCTTCAATCACTACTTCAGGCCTGCACTCGTGGAGAAGGCAAAGGAGAAGGTGACGCGGGACGCATCTGGGAGCATCACC
GGCTTTGACAAGTCCGATCTCCGTCTTGATGTCTTCCTGGTGCAGCATGACATGGAGAACCTGTACATGTGGGTTTTTAA
GGACCGGCCTGACAATGCCCTTGGGAAGATGCAGCTCCGGAGTTTCATGAATGGGCATTCCAAGCACGGGGAGCCATCTT
TTCCGTTCAGTGCGGACAAGGGCTTTTCGAGGTCACACCGCATGCAGCGAAAGCACTACCGTGGTCTGTCCAACCCACAG
TGCCTTCATGGGATTGAGATTGTGAACTCACCAAACTTGTCGGCAGTTCCTGAGGCTGACATGAAGAGGTGGGCTGAGCT
TACAGGAAGGGAGCTTAATTTCTCAGTACCATCTGAAGCGAGTGACTTTGAGTCATGGAGAAATCTTCCAAGCACTGATT
TTGAACTTGATAGGCCACAGCCAGCAGCGTCAAAGACCGTCCCACATACCTCTCATAATAATAATCACAAGAAGGCACTG
AATGGTTCAGGTCTGAATCTATCTACACCACCGTCATCAGACGATGGGATGGACCTTTCACCAAAGTGCCACAAACGCCG
CAAGGACTTCTTTGGTCATGGCGTAGAAGAGGATTGTGCAATGGCCAATAATTCCTGTTCCGAGAGGGAGCAAGAGGTTG
AAGTACACACCGGTGAGCCGTCATGGATGCATGACTTCACTGGCGTGGCAAAGCACGCAAGTGGGCCTGTTACTGCTGCC
AAGACGATATACGAGGATGATGAAGGCTACCTGATAATGGTGAGCATGCTCTTATCCGATCCACACAGCGTGAAGGTCAC
CTGGAGGAACACGCTGACGCATGGCGTCGTGAAGATAACATGTGTGAGCACCGCCCGCATGCCCTTCATCAAGAGGCACG
ACAGGACCTTCAAGCTGACCGACCCTTCCCCTGAGCACTGCTCTCCCGGCGAGTTTGTGAGGGAGATACCTCTGGCCACA
AGGATCCCAGAGAACGCCAAGATCGAAGCGTATTACGACGAGACCGGCACTGGACTGGAGATCATGGTACCGAAGCACCG
GGTCGGGCCAGAGGAGCATGAAGTTCAGGTTTGCATGAGGCCCCCGCATCTTGGCGACAATGATCTCGTTTTATCATAAT
AGAACAGGAAAAAAAACATTTTAGCCTCTTACTAGGT-CATCCGGTGTCATGCCATGAGGCACCGGAGCATAGCAGCAAA
GCTATCATCATGCCATGGATCAAAAATCGGAAATTTTCTTTCGGCACTGAACATTAGTCGCACTTATCTGTCTGTCTGTC
TCCCTTAGGCGGAAAATTACCTCTTCCTCCTCTGTTAATTCCCCTCTGTACTTTCTTTCTATACAGGTGCTACATCACTA
CATTGGTGGTGATCCCCTTGACTATTCCTTTCTGTGAAACATGGCAAAGCTAATAGTAGTATATATTC---TGTCCCTGT
ATATTCCGAGAATTGGGTTCATAATAATGTGGACAGCTACTACTCATGAGCAGAGTCTGTCGATATCGCTGTTGTAATCA
TTGTCCTAGGCATCTTAGCATACTTGTATGTGTCGTACTACATAGGTATGGCCTGGATCGCTCTCGGCATAAATGGGAAC
TTAAGATTCTGTTG-CCTGAATCTGTGCCCGCACCTTGGTTATTCCTGCTGATGAC-----------CAGGGCTCGGTTT
TCGGCAGCGGTAATACTGAATCTCGCTGCTCCTGGCTCG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CTCCAGCACGAAATTCTCAGTTTCATCCGTACTTGTGGGTGATGCTGTGTGAGCAAATAAGAAGATATTCTTACATGTT
TACAGTACAAAGGTATATTTGCTGAGACTTGATAGAGGATCTTTCTTGACTGACATGTGGCTGAATTATTAGTGATGATC
AGAGCTCAGTTTCCACAGCGGTAACAAAATCTCGCTGTTTTGTGGCTCAACTCGGGATGCATTTCTCAGTTTATCCTGAC
C--TGTGGGTGATCTCTGGGTTGATGCTGTG------TAG-----------------CCCCACATTTGCAGTACAAGGAT
ACACATCCCCCTTGACTA---TTCCTTTCTTTGAAACATGATAATAGCAGTATATATTCTGCATGTGCATATATTCCGAG
GATTGGGTTCATAATAATTTGGACAGCTGCTTCTCATGAGCAGAGTCTGTCGATATCTCGCTGTTGTAGTCAC--TGCCC
TA---GGCATCTCAGCATACCTGTATGTATTGTGCATTTGTGCTACTCCCTCTGTTTACTTTTATAAGACCTTCAAGATA
TTTCAGACAATGTACAAAACAGCCCATTTTGAGCTGTCTGAAATGACTTACAAAAGTGAACGGAGGGAGTATATACGACC
CGGATCGCTCTCGGCATAAATGGGGACCTAAGATCCTGTCTGCCCGAGTCTGTTCTGGCGCCTTGGCCATTCAGATCTCA
GTTTTCG
>chr3D_1
CACACTCACTTTCGAAGGCAGCGTCGACACGACTATCATTGTAAGCAATTTCACACGGTAGAAATTCCCTAG---AACAG
GCTCCAAAAAATTCGAACAGATTTTGA-GAAATTCAAGTAAAATTCAATCGAGTTTATATACCAAG---AAAGAAAAAAG
AAAAGGTAAACTGGGGAAAACGCGGTTGCAGGTTGCGACCCGCAAGGCCGCAACGAGACGAGACCCGAACCCGCTGACGC
CACGCCTCGACCGA-----CCACCCCTCTTCTTCTTTGGCTGGCCCGCCCCCCCTCCCTCTCCTCTCTCTTCCCCTCCTC
CTCCCCTCT-CCGCCCCACCCCCGCGTCTCCGGCGAGGGCTCAGGCCGCGGCCCCGTCGACTCGCGCACCTTCTCCGGCA
GAGCGCCTCCTCGGCGGAAACAGCGGTCTCGCGGGAGCTCCCT--TCCCCTC-CCCCAAGGTTAGAACAGATCAGAGCAA
GGGTCCCCCCGCTCC-TTTTCATTTTCGGCGGCGATTCTTGGGGTGCTAGTGGGATTCCCAAGGTTTACTCCCGCATGAT
TCGAGAGCAGATTGGTTCCTCCGGGTGAAATTTTGCTTAGTCTGTAGGTATCTACGGGGAAATCGGC-TTGCTTAGAACA
GAAAGAGGGCTCAAGATTTCAGTACTAATTCGCATGCTGTTAATGGTGCTCGTTCATTTCACGATTGTGAGAAGTAACTT
TTGTTCCCCGTCGATCGATTCGCAGGTCTGCGGCGCCGGATTGGCCTCATCAGCTCGAAGATCTCGATTTTGTTTCCAAG
GAAGGAAGGGCTCCTCGTCGCAAATCTCGATCTGTGGACTGGTGGGCAGAAAGACTCGCCTTTTATGGGGCAACCCCGTG
AGAAGCCCGTGCCATGATTGGGGCATCAGGGGAGGAGAGGCAGTGGTAGGAGG---TACAGCAGGAGGCAGGAGCAGAAG
AGCAGGCAAGGATAGGCAGGACCAAGGAAAAGGAGAGGAGGGAGCTCTCCATGGGAGGAGAGCCCCTCCTCACCTCCCTC
TCCATGGAGAACAGCAACAGCCATCCCTGCACCCTCCTCTCCATGGACCCCGCGGGGTCGCACCCGGCCTCAGCCGAGTC
CTCCGGCGGCGGCGGCGCCGGCGCCGTCAACGGGGTCGGCGCCAGTGCTGACAGGGAGCTCTTCATCATTCCGCGGCATG
AGTCTGTGCGTCAAGGCCCGCCGGACATCAACGTCCCGCTGTCGGCAGACCCCTCCCCGCCGCCTGCATTGTGGAGCCTC
GACACGTTTGACATTTTCGATGTCGGCCTTGGCACGCACACTCATGAGTCTGAGGTTGCGCTGACGCTTCCAAAGTCGAG
CGGCAACGGCAGTGCTGCAGTCGGCGTCGGCGCGAGGAAGTGCGCTAAGAGGGGGGACAGCATTTGGGGAGCTTGGTTCT
TCTTCAATCACTACTTCAGGCCTGCACTTGTGGAGAAGGCAAAGGAGAAGGTGACGCGGGACGCGTCTGGGAGCATCACC
GGCTTTGACAAGTCCGATCTCCGCCTTGATGTCTTCCTGGTGCAGCATGACATGGAGAACTTGTACATGTGGGTTTTTAA
GGAACGGCCTGACAATGCCCTTGGGAAGATGCAGCTCCGTAGTTTCATGAATGGGCATTCCAAGCACGGGGAGCCATCTT
TTCCATTCAGTGCGGACAAGGGCTTTTCAAGGTCGCACCGCATGCAGCGAAAGCACTACCGTGGTCTGTCCAACCCACAG
TGCCTTCATGGCATTGAGATTGTGAACTCACCAAACTTGTCGGCAGTTCCTGAGGCTGACATGAAGAGGTGGGCTGAGCT
TACAGGAAGGGACCTTAATTTCTCAATACCGGCTGAAGCGAGTGACTTTGAGTCATGGAGAAATCTTCCAAGCACTGATT
TTGAACTTGATAGGCCACAGCCAGCAGCGTCAAAGGGCGTCGCACATACCTCTCATAATAATAATCACAAGAAGGCACTG
AATGGTTCAGGTCTGAACCTATCTACACCGCCGTCATCAGACGATGGGATGGACCTTTCACCAAAGTGCCACAAACGCCG
CAAGGACTTCTTTGGTCATGGCGTAGAAGAGGATTGTGCGATGGCCAATAATTCCTGTTCTGAGAGAGAGCAAGAGGTAG
AAGTCCACACTGGTGAGCCGTCATGGATGCATGACTTCACTGGTGTGGCAAAGCACGCAAGTGGGCCTGTTACTGCTGCC
AAGACTATATACGAGGATGATGAAGGCTACCTGATAATGGTGAGCATGCTCTTATCCGATCCACACAGCGTGAAGGTCAC
CTGGAGGAACACGCTGACGCATGGCGTCGTGAAGATAACATGTGTGAGCACCGCCCGGATGCCCTTCATTAAGAGGCACG
ACAGGACCTTCAAGCTGACCGACCCTTCCCCTGAGCACTGCCCTCCAGGCGAGTTCGTGAGGGAGATACCTCTGGCCACA
AGGATCCCAGAGAACGCCAAGATCGAAGCGTATTATGACGAGACCGGTACTGGACTGGAGATCATGGTACCAAAGCACCG
GGTCGGGCCGGAGGAGCATGAAGTCCAGGTTTGCATGAGGCCCCCGCATCTTGGCGACAATGATCTCGTTTTATCATAAT
AGAACAGGAAAAAAAACATTTTAGCCTCTTACTAGGTTCATCCGGTGTCATGCCATGAGACACCGGAGCATAGCAGCAAA
GCTATCATCATGCC-TGGATCAAAAACCGGAAATTTTCTTTTGGCGCTGAACATTAGTCGCACTTATCTGTCTGTCTGTC
TCCCTTAGGCGGAAAATTACCTCTTCCTCCTCTGTTAATTCCCCTCTGTACTTTCTTTCTATACAGGTGCTACATCACTA
CATTGGTGGTGATCCCCTTGACTATTCCTTTCTGTGAAACATGGCAAAGCTAATAGTACTCGTATATATTCTGTCCCTGT
ATATTCCGAGGATCGGGTTCATAATAATGTGGACAGCTACTACTCATGAGCAGAGTCTGTCGATATCGCTGTTGTAATCA
TTGTCCTAGGCATCTTAGCATACTTGTATGTATCGTACTATATAGGTATGACCTGGATCGCTCTCGGCATAAATGGGAAC
CTAAGATTCTGTCTACCTGAATCTGTTCTCGCGCCTGCTTTATTCGTAGTGCTGAACCAATGATGTTCAGGGCCTGGTTT
TCA-CAGCGGTGATGCTGAATCTCGCCGTTTCTGGCTCGCTCCGGCGCGCATTTCTCGGTTCATCCTGGCTCTTCTGGGT
GCTGCGGCGTAAGCAAAGATGACATTTCTGCCTGTATATTCGCTGACTTGTATGACCAGGATCGTTTTGGTCTTG-GATG
AAAATCTGTTATGTGACTTGAATTTTCGCGCTTAAGTTTGCGATTTCTGGTACTGAACGTCTGAGATACTGAATCTCACC
GCTCCAGCACAAAACTCTCGGTTTCATCCTTACTTGTGGGTGATGCTGTGTGAGCAAATTAGAGGATAGTTGTACATGTT
TGCAGTGCAAAGGTATATTTGCCGAGACTTGGTAGAGGATCTTTCTTGACTGATATGTGGCTGGATTATTAGTGATGATC
AGAGCTCAGTTTTTACAGCAGTAACAACATCTCGCCGTTTTGTGGCTCAACTCGGGATGCATTTCTCGGTTTATCCTGAC
TTTTGTGGGTGATCTCTGGGTTGATGCTGTG------TAAGCGAAGGAGAACATTTTCCCCACATTTGCAGTACAAGGAT
ACATATTCCCCTTGACCATTCTTCCTTTCTTTGAAACAT---AATAGCAGTATATATTCTGCCTGTGCATATATTCTGAG
GATTGAGTTCATAATAATTTGGACAGCTACTTCTCATGAGCAGAGTCTGTCGATATCTCGCTGTTGTAATCACATTGCCC
TA---GGCATCTTAGCATACCTGTATGTATTGTGCATTTGTG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>chr3B_2
-ACGCTCATTTTTGAAGGTAGTGTCGACACAA-TATCAACATAAGAAATTCCACACGGTAGAAATCACCCAAAGAAATAG
GCTCCAAAAAATTCGAACGAATTTTGGCGAAATTTAAGTAAAATTCAATCGAATTC----ACCAAG---AAAAAAAAAGT
ATAAAC------GGGGGAAACGCGGTTGCAGGTTGCGACCCGCAAGGCCGCAAGGAGACGAGACCCGAACCCGCTGACGC
CACGCCTCGACCGACCACCCCACCCCTCTTCTTCTTTGGCTGGCCCGCCCCCC-TCTCTCCCCTCTCCCTTCCCCTCCTC
C---CCTCT-CCGCTCCGCCCCCGCGTCTCCGGCGAGGGCTCAGGCCGCGGCCCCGTCGACCCGCGCACCTTCCCCGGGA
GAGCGCCTCCTCCACGGCAACAGCGGCCTCGCGGAGGCTCCCTTCTCCCCTC-CCCCAAGGTTAGAACAGATCAGAGCAA
GGCCCG-CCCGCTCC-TTTTCATTTTCGGCGGCGATTCTTGGGGTGCTAGTGGGATTCGCAAGGTTTACTCCGGCATGAT
TCGAGAGCAGATTGGTTCCTCCGGGTGAAATTTTGCTTAGCCTGTAGGTATCGACGGAGAAATCGGCTTTGCTTAGAACA
GAAAGAGGGCTCAAGATTTCAGTACTAATTCGCATGCTGTTAATGGTGTTCGTTCATTTGACGATTGTGAGAAGTAACTT
CTGTTCCCCGTCGATCGATTTGCAGGTCTGCGGCGTCGGATTGGCCTCA---GCTCGAAGATCTCGATTTTGTTCCGAAG
GAAGGAC----CCCTCGCCCCAAATCTCGATCTGTGGACTGGTGGGCAGAAAGATTCACCCTTTATGGGGCAACCCCGTG
AGAAGCCCGTGCCATGATTGGGGCGTCAGGGGAGGAGAGGCAGTGGTAGGAGGAGGTACAGCAGGAGGCAGGAGAAGAAG
AGCAGGCGAGGATAGGCAGGACCAAGGAAAAGGAGAGGAGGGAGCTCTCCATGGGAGGAGAGCCCCTCCTCACCTCCCTC
TCCATGGAGAACAGCAATAGCCATCCCTGCACCCTCCTCTCCATGGACCCCGCCGGGTCGCACCCGGCCTCGGCCGAGTC
CTCCGGCGGTGGCG------GCGCCGTCAACGGGGTTGGCGCCAGTGCTGACAGGGAGCTCTTCATCATTCCGCGGCATG
AGTCTGTGCGTCAAGGCCCGCCAGACATCAACGTCCCGCTGTCAGCAGACCCCTCCCCGCCGCCTGCATTGTGGAGCCTT
GACACGTTCGACATTTTCGATGTCGGCCTTGGCACGCACACTCATGAGTCTGAGGTTGCGCTGACGCTTCCAAAGTCGAG
CGGCAACGGCAGTGCCGCAGTCGGCGTCGGTGCGAGGAAGTGCGCTAAGAGGGGGGACAGCATTTGGGGAGCCTGGTTCT
TCTTCAATCACTACTTCAGGCCTGCACTTGTGGAGAAGGCAAAGGAGAAGGTGACGCGCGACGCATCTGGGAGCATCACT
GGCTTTGACAAGTCCGATCTCCGCCTTGATGTTTTCCTGGTGCAGCATGACATGGAGAACTTGTACATGTGGGTTTTTAA
GGAACGGCCTGACAATGCCCTTGGGAAGATGCAGCTCCGGAGTTTCATGAATGGGCATTCCAAGCACGGGGAGCCATCTT
TTCCATTCAGTGCGGACAAGGGCTTTTCGAGGTCGCACCGCATGCAGCGAAAGCACTACCGTGGTCTGTCCAACCCACAG
TGCCTTCATGGGATTGAGATTGTGAACTCACCAAACTTGTCGGCAGTTCCTGAGGCTGATATGAAGAGGTGGGCTGAGCT
TACAGGAAGGGACCTTAATTTCTCAATACCGGCTGAAGCGAGTGACTTTGAGTCATGGAGAAATCTTCCAAGCACTGATT
TTGAACTTGATAGGCCACAGCCAGCAGCGTCAAAGAGCGTCGCACATACCTCTCATAATAATAACCACAAGAAGACACTG
AATGGTTCAGGTCTGAACCTATCTACACCGCCGTCATCAGACGATGGGATGGACCTTTCACCAAAGTGCCACAAACGCCG
CAAGGACTTCTTTGGTCATGGCGTAGAAGAGGATTGTGCGATGGCCAATAATTCATGTTCCGAGAGAGAGCAAGAGGTAG
AAGTCCACACCGGTGAGCCGTCATGGATGCACGACTTCACTGGCGTGGCAAAGCACGCAAGTGGGCCTGTTACTGCTGCC
AAGACGATATACGAGGATGATGAAGGCTACCTGATCATGGTGAGCATGCTCTTATCCGATCCACACAGCGTGAAGGTCAC
CTGGAGGAACACGCTGACGCACGGCGTCGTGAAGATAACATGTGTGAGCACCGCCCGCATGCCCTTCATCAAGAGGCACG
ACAGGACCTTCAAGCTGACCGACCCTTCCCCTGAGCACTGCCCTCCTGGCGAGTTCGTGAGGGAGATACCTCTGGCCACA
AGGATCCCAGAGAACGCCAAGATCGAAGCGTATTACGACGAGACCGGTACTGGACTGGAGATCATGGTACCAAAGCACCG
GGTCGGACCGGAGGAGCATGAAGTCCAGGTTTGCATGAGGCCCCCGCATCTTGGCGACAATGATCTCGTTTTATCATAAT
AGAACAGGAAAAAAAAGATTTTAGCCTCTTACTAGGT-CCTCCGGTGTCATGCCATGAGACACCGGAACATAGCAGCAAC
GCTATCGTCATGTCCAACTTATT-----------------------------------------------------TGTC
TCCCTTAGGCGGAAAATTACCTT---CTCCCCTGTTAA-TCCCCTCTGTACTTTCTTTCTACACAGGTGCTACATCACTA
CATTGGTGGTGATCCCCTTGACTATTCCTTTCTGTGAAACATGGCAAAGCTAATAGTAGTATATATTC--CTGTCCCTGT
ATATTCCGAGGATCGGGTTCATAATAATGTGGACAGCTGCTACTCATGAGCAGAGTCTGTCGACATCGCTGCTGTAATCA
TTGTCCTAGGCATCTTAGCATACTTGTATGTATCGTACTATATAGGTATGGCCTGGATCGCTCTCGGCATAAACGGGAAC
CTAAGATTCTGTCTACCTGAATCTGTTCTCGTGCCTGCTTTATTCGTAGTGCTGAACCAATGATGTTCAGGGCCTGGTTT
TCA-CAGCGGTGATGCTGAATCGTGCTGTTTCTGGCTCGCTCCGACGCGCATTTCTCGGTTCATCCTGGCTCTCCTGGGT
GGTGTTGCGTAAGCAAAGATGATATTTCTGCTTGTATATTCGCTGACTTGTATGACCCGGATCGTTTTGGTCTTTAGATG
AAAATCTGCTGTCTGACTTGAATTTCCGCACTTAAGTTTGTGATTTCTGGCACTGAACGTCTGAAACACTGAATCTCGCC
GCTTCGGCACAAAACTCTTGGTTTCATCCTTACTTCTGGATGATGCTGTGTGAGCAAATTAGAAGATATTTGTACATGTT
TGCAGTACAAAG-------------GACTTGGTAGAGGATCTTTCTTGACTGACATGTGGCTGAATTGTTAGTGATGATC
AGAGCTCAGTTTTCACAGCAGTAACAAAATCTCAGCCGTTTGTGGCTCAACCCGGGATGCATTTCTCGGTTT--------
----GTGGGTGATCTCTGGGCTGATGCTGTGCAAGTGTAAGCGAAGGAGAATATTTTCCCCACGTTTGCAGTACAAGGAT
ACATTATCCCCTTGACTATTCTGCCTGTGG----AACATAATAGTAGCAGTATATATTCTGCCTGTGCATATATTCCGAG
GATCGGGTTCATAATAATGTGGACAGCTGCTTCTCATGAGCAGAGTATGTCGGTATCTCGCTGTTGTAATCAATCAGTTG
TCCTGGGCATCTTAGCATACCTGTATGTATTGTGCATTTGTGCTA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>SNPs
-------------S------S-----------S--------S---------S----------------------------
------------------------------------------------------------SS--S-SSS-----------
--------------------------------S-----------------------------------------------
---------------------------------------------------S----------------------------
S--------S----------------------------------------------S-----------------SS-S--
-----------------S-----------------------------S--S-S---------------------------
--S-S--SS-S-SS-S--------S-----------------------------------S---------S---------
-----------------------------------S-S-S----------------------------------------
----------------------------------------------S---------------------------------
------------S---S--------------------------------------------------SS-----------
S--------SS---------------------------S---------------------------------S-------
----S----------------------------------------------------S------------------S---
----------------------------S---------------------------------------------------
--------------------------------------------------S-----------------------------
S--------------------------------------------------------S--------------------S-
--------------------------------------------------------------------------------
-----------------------------------------S-----------------------S--------------
------S--------------------------------------S----------------------------------
----------------------------S---------------------------------------------------
-----------------------S------------------------------------S-------------------
---S----------------------------------------------------------------------------
----S-----------------------------S---------------------------------------------
--------------------------------------------------------------------------------
------------S------------S----SS------------------------------------------------
------------------------------------S----S--------------------------------------
-----------------S-----------S--------------------------------------------------
---------------------------------------S--------------------------S-----------S-
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----S--------S------------------------
-----------------------------------------------S-----------------------S--------
---------S--------------S-------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------S-----------S--------------S---S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S--S------------------------------------------------------------------
-------------------------------S--------S---------------------------------------
S-----------SS------------S-S---S---SSS------S-SS--S---S-----------------SS-----
--SS-------S--S-------------S-S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---S----S---------S-----------------------------S----------SS--------
-S--------------------S--------S------------------------------------------------
------------S------S---------------S-------------------------------S------------
S--------------------------------------S----------------------------------------
---S--S--------------------------------S----------------------S-----------------
--------------------------------------------------------------------S-----------
------------S--------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_489
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GATCAGAGCAA
GGTCTCCGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>reverse_2159
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------------TG
AAGTACACACCGGTGAGC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_989
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GGATAGGCAGGACCAAGGAC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>reverse_2762
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CGGCACTGAACATTAGTCGC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_2585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GGCCAGAGGAGCATGAAGTT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>reverse_4072
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------TATACGACC
CGGATCGCTCT---------------------------------------------------------------------
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