>input_sequence_41395
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------ATGGGGGCCAT
CATGTGCTGCTTACGCGGCCGCGGCCCC------GGCGACGACGCGCCTGGCTGCTGCTGCCTGCCATGGCCTTTCCTGA
ACAACGATCGCAACAACGATAACAACAACAACAACAG---CAATCACAACTCGGTATGCTTTTACCTATCTGTTTGTTTT
GTACGTCTTGTCTGGAGATATTTGGTGCAGTTGCGGTGATATAGACATGTGATGGATTTAGTCATGGTGTTGGTGAAATG
CACGGAACTTGTGTTGCGTAGTGGCAGATGGTGGGTGGATTTTCCGTCTTCCCGATCCTCGCATGCGCTAGTCATGCCCC
AGGATCGCATTGCCGTGATCTCAGAATAGCGGATGTTCATTATTGTGTTCATTTAATTGCGTAATTTGTAAAT-------
---------TAGTAGTAGATAAACCATGAACGGATATTAGTAGTTTGCATGGAGCCTATCTGGTTTTATTACCCTGAGAC
TTGTTTGACAGTTG----AGAGCTGCTATTCTCAGAAGTTGGAAGTGGACAACTCGGTACTGAATAAGTAAGATACTAAC
ACCCAATTACAAACGGCCAGTCCGTGTAGCTTGAAAATTATTACAGTACTAAACAGTTTGGTATACTTATTAATGGTGCC
ACATTTGTCCAGAATAATTGCATGTTCTGTCTGGACCTTCTGTTTCAGTCAGCTGCTATGCACTGGTATCATCTAAATGT
TTTATTCCCCCACAGGGCGGTCCTGCTCGTCAAAGAGCAAATACACGGGTTGCGCCTGTTCAGGGAAGGGTTCCTCCTGC
GGGTTCACGGCAGGATGATTCAATGAACACCTTCCGCTGCCCTCCTAGGCCTTTGCCTTATGATGATCCTCAATTCAGAC
ATCAAACGGAGCGCCACCCGCTGGTGGCAGGACATAACAAGGCTTCAACGCAATCCCAGAAATCTAAACTACTTGAAGAA
AACAATGATGCTGATACCAGATCAACTTGTGCCGATCAGAAGGCTGATGGACCGTCCCTGAAAGCTGAGTCGGGAGGTAA
AAAGATCGGGGGAGCTCAAGTCTGTGTTCCTTCTGATTCTGAGGATGATTGTCCAATATGCCTAGAAGGTCAGTGAAAAC
AATTACCTGTTTTACAACTCCTTCACTATTCAGAATTGCAGCATCTTGTATTTTCGCTCTGGGGGATTTACAATTTACAC
TTC---GCATATATCATATAA-----------------------------------------------------------
-----------------AGTACACAAGAAAGAGAGAATCTGAAACATTATTGTGTCAGTTGCAAAAATATACTCCCTCCG
TTCCTAAATATTTGTCTTTTTAGAGATTTCAAATGGACTACCACATACAGATGTATATAGACATATTTTAGAGTGTAGAT
TCACTCATTTTGCTCCGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTAGAAACGGAGGGAGTACGTGTT
TGTTCATTTTAATCATTATTGTTAATGA--ATATGTCTTAATTAATCAGTTCTCATTGATAGCTGGTTTGTTATCATTTT
ATCAAATTGCTGCCACGT----GAATACATCTACTCTGGCAATGGTAAAGGAAAACAAATGTAGCATTCCATAACTCTGA
ATTTATATCCTTGTACTTTGTGCAGAGTTGTTTGCTCTTCTTGTCTTCTGATTGTTTCTTATTTACAGAGTATGATTACG
AGAATCCAAAGATAGTGCTTCAGTGCAACCATAATTTCCATCTTAGTTGCATTTACGAGTGGATGGAAAGAAGTCAATCT
TGTGCGGTCTGTGCCAAGGTATTAAACTTATACGTAAAATCCCTTTTTTTCACCTGAGAAGGGAAGCATTAGTAGGTATT
TGATCTAATCTGGCAAAAATCATGTCAAACATTTTGACTGCTGAACTGCTCCATTGTAGGTAATGTTGTTTAAAGAGGAC
CAATAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>chr3A_1_TraesCS3A01G339000
CTGGGGCCGGCGACTGAGGACCAATTCGCCTCAGGCCCTTTTTTGTGCCGGCTCGTCCCCAGGCGGCGATTTTAGGCGCC
CTCTGGGGGGCAATGGCTGAAGATGCTGGGCCGAAATCTCTGGAACAAAAGCAGAGTATCCTTTTCGCAAAAAAAGCAGA
GTATCCAGAGATAGATATAAAAAGCAGGGACCTTGCAAAAGGCAGCG-AGGGTGGTCCGCCAGGGAAAAATCATA---GT
CAGCTTCCACCCCCACTTA---CCAGCCGGCAGCGCTAATCTCGTAACAAAACCCACCAATAGGATTCTAAGCTTTATTT
CCCAGAGATTTTTATTCTATCTCTCTCTTTCCGCCGCTCCGCCCGTGCGTTCGGCGCAACAGCAAACCGATCGCAATGCC
TTGCGTGCCAGCTCCAATCTCCTAGCCGCCGCCGCTCG------------TCCGCCTGCATCTCCAACCGCAATCCTCCC
CCGATTCTCCCGAGTTCAGTTACCACTGCCCGTACCACCACCACTACTTGAACCCACCGCCGTCAATCTGCGTCGGGG-T
TTAGCAGCTCCGCCCGTCCGTCCCCAAAGGTCCGCCT----TTTCTTTCTCCTTCACAAACTCGCAGTCAAAAGGAAATT
CCGACTCCATCTTGAGTAGCGGCAGCGGTAGCAGAATTTAAGTGGCGCCGCATACTCGCCGTCGTCGCCAAAGATGTGAC
TCTGTTTTTCGATTATTGTTGATTCTCTCATCGGCGGCGTAGAGCCTAAATTTCCGGCGTAACT--TTGGGTTGTTTCGC
AGGTCCAGCGGCGAAGAGTAAAGGAACCTGCCCGGATTCAAAGCGACGG---GATCGGATTCCATCCCGTGGATAAATTG
CCACCGATCGCCTTTTTTCCTTCCTTCCTTCCGTCGGTGTGCCGGTGCGGCGGCCGGGTAGCGAGAGGGGAGGTCCAAGG
ATAGGTGGGAACTAGAAGGCCGGTACTGCTGGCTCCTCCGTTTGGTTTGCAGGGGAGGGGTTCAGTCAGATGGGGGCCAT
CATGTGCTGCTTACGCGGCCGCGGCCCC------GGCGACGACGCGCCTGGCTGCTGCTGCCTGCCATGGCCTTTCCTGA
ACAACGATCGCAACAACGATAACAACAACAACAACAG---CAATCACAACTCGGTATGCTTTTACCTATCTGTTTGTTTT
GTACGTCTTGTCTGGAGATATTTGGTGCAGTTGCGGTGATATAGACATGTGATGGATTTAGTCATGGTGTTGGTGAAATG
CACGGAACTTGTGTTGCGTAGTGGCAGATGGTGGGTGGATTTTCCGTCTTCCCGATCCTCGCATGCGCTAGTCATGCCCC
AGGATCGCATTGCCGTGATCTCAGAATAGCGGATGTTCATTATTGTGTTCATTTAATTGCGTAATTTGTAAAT-------
---------TAGTAGTAGATAAACCATGAACGGATATTAGTAGTTTGCATGGAGCCTATCTGGTTTTATTACCCTGAGAC
TTGTTTGACAGTTG----AGAGCTGCTATTCTCAGAAGTTGGAAGTGGACAACTCGGTACTGAATAAGTAAGATACTAAC
ACCCAATTACAAACGGCCAGTCCGTGTAGCTTGAAAATTATTACAGTACTAAACAGTTTGGTATACTTATTAATGGTGCC
ACATTTGTCCAGAATAATTGCATGTTCTGTCTGGACCTTCTGTTTCAGTCAGCTGCTATGCACTGGTATCATCTAAATGT
TTTATTCCCCCACAGGGCGGTCCTGCTCGTCAAAGAGCAAATACACGGGTTGCGCCTGTTCAGGGAAGGGTTCCTCCTGC
GGGTTCACGGCAGGATGATTCAATGAACACCTTCCGCTGCCCTCCTAGGCCTTTGCCTTATGATGATCCTCAATTCAGAC
ATCAAACGGAGCGCCACCCGCTGGTGGCAGGACATAACAAGGCTTCAACGCAATCCCAGAAATCTAAACTACTTGAAGAA
AACAATGATGCTGATACCAGATCAACTTGTGCCGATCAGAAGGCTGATGGACCGTCCCTGAAAGCTGAGTCGGGAGGTAA
AAAGATCGGGGGAGCTCAAGTCTGTGTTCCTTCTGATTCTGAGGATGATTGTCCAATATGCCTAGAAGGTCAGTGAAAAC
AATTACCTGTTTTACAACTCCTTCACTATTCAGAATTGCAGCATCTTGTATTTTCGCTCTGGGGGATTTACAATTTACAC
TTC---GCATATATCATATAA-----------------------------------------------------------
-----------------AGTACACAAGAAAGAGAGAATCTGAAACATTATTGTGTCAGTTGCAAAAATATACTCCCTCCG
TTCCTAAATATTTGTCTTTTTAGAGATTTCAAATGGACTACCACATACAGATGTATATAGACATATTTTAGAGTGTAGAT
TCACTCATTTTGCTCCGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTAGAAACGGAGGGAGTACGTGTT
TGTTCATTTTAATCATTATTGTTAATGA--ATATGTCTTAATTAATCAGTTCTCATTGATAGCTGGTTTGTTATCATTTT
ATCAAATTGCTGCCACGT----GAATACATCTACTCTGGCAATGGTAAAGGAAAACAAATGTAGCATTCCATAACTCTGA
ATTTATATCCTTGTACTTTGTGCAGAGTTGTTTGCTCTTCTTGTCTTCTGATTGTTTCTTATTTACAGAGTATGATTACG
AGAATCCAAAGATAGTGCTTCAGTGCAACCATAATTTCCATCTTAGTTGCATTTACGAGTGGATGGAAAGAAGTCAATCT
TGTGCGGTCTGTGCCAAGGTATTAAACTTATACGTAAAATCCCTTTTTTTCACCTGAGAAGGGAAGCATTAGTAGGTATT
TGATCTAATCTGGCAAAAATCATGTCAAACATTTTGACTGCTGAACTGCTCCATTGTAGGTAATGTTGTTTAAAGAGGAC
CAATAA-CATGCTGGCTGCAATTCTTTACACATGCTGAAGACCCAGGACTGAATTGCTTAGGTTGTGTACATAGCATTGG
TGAAATCATGTCGCTAGATTGTTTGCTGAAACCTCTAGCGGTGCGAAGATTTGGCTTTTCCTTCTAGAGCAG----TTCA
TGTTTCTCTTTTCTCCACGAATTTAATGATTTCTGCCAATGCACACCTGGCATTTTTCAAACTGATGTTACTTTGGTGAA
CGGTGGGTGATCGCACTGGCTTGACATGCTCAAGTATAATGCTCTGGAAACTTCACAAGTTACATCCACTTCTTTGCCAA
TAGCTATTTTGACATCATTTCAATAGTTTCCATCTAGAACCATGTAGTTCTAGAATCAAGATGCAGCGTATGCTTACCCC
TAGTGTATCGTTATTATTGAATGAG------------------------------T------------------------
------TCAAATTGAGCATGATTTATCAAGTAGAAACAAAATTGAGGTTTCTCAGACTTGAAATCACCAATTAATTAGGG
GATACC-CTTGCAAAGGTCAATACCACCTCCTCTGGTGGTGACAAGTGGGCATGTGAAC---------CAACCACGGAGT
TTTGGTGTGTTTTCTCACAAAGCGCTTGAGGATGTGAGGTTTTCTGTTTGTGTCTTT-----------TTTTCTTCTTCT
TAGATTCGTTTGTTTCAAAATGATTTATCACTCGTACCGCGTGTCCAAATGATGAACCGCTTTCACCTTTGTGTTTCTCG
CGCCTAGGTTTTCAAAACTCGGTCCACTTTGGTAGGTTTTGATGAACAG--TTTTCTGCAAAATCTATGCTCCAAGCTGT
ACTAATCCATGCTTCAAAACTGACTAAAATGTGCTTCAAACTATACTAAGGTGTGCTTCACTTTTTTTGGGACGCACAGT
CGCTTTTTCACATGAGTAGCACATGT-GTGCTTCACACGAAAAACCAAAATAAAAGAACCGAAGATAGAAAAAACTGCAA
ATAGAAAATACATAAACAAAAAACAAAGATCAAAAAAATGGAAATTAAAAAACCA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>chr3B_108
--------------------------------------------------------------------------------
---------------------------GGGCCGAAATCTCTGGAACAAAAGCAGAGTATCCAGAGATAG-----------
----------------ATAAAAAGCAGGGACTTTGCAAAAGGTAGCG-AGGGTG----GCCAGGGAAAAATCATA---GT
CAGCTTCCACCCCCACTTATAACCAGCCGGCAGCGCTAATCTCGTAACAAAATCCACCAATAGGATTCTAAACTTTATTC
CGG-GAGATTTTTATTCTATCTCTCTCTTTCCGCCGCTCCGCCCGTGCGTTCGGCGCAACAGCAAACCGATCGCAATGCC
TTGCGTGCCAGCTCCAATCTCCTAGCCCCGCCGCTGCTCGC-------------------TCTCCAACCGCAATCCTCCC
CCGATTCTTCCGAGTTCAGTTACCACTGCCCGTACCACCACCACTACTTGAACCCGCCGCCGTCAATCTGCGTCGGGGGT
TTAGCAGCTCCGCCCGTCCGTCCCCAAAGGTCCGCCT----TT----TCTCCTTCACCAACTCGCAGTGAAAAGGAAATT
CCGGTTCCATCTTG------------GGTAGCAGAATTTAACTGGCGCCGCATGCTCGCCGTCG---CCGACGATGTGAC
CCTGTTTTTTTTCTTCTATCGATCCTCTCGCCGGCGGCGCAGGGCCTAAATTTGCGGCGTAGTAACTTGGGTTGTTTCGC
AGGTCCAGCGGCGAAGAGTAAAGGAGCCTGCCCGGATTCTAAGCGGCGG---GATCGGATTCCATCCCTTGGATAAATTG
CCACCGATCGGCTTTTTTCCTTCCTTCCTTCCGCCGGTGTGCCGGTGCGACGGCCGGGTAGCGAGAGGGGAGGTCCGAGG
ATAGGTGG-AACTAGAAGGCCGGTACTACTGGCTCCTCCGTTTGGTTTGCAGGGGAGGGGTTCAGTCAGATGGGGGCCAT
CATGTGCTGCTTACGCGGCCGCGGCCCC------GGCGACGACGCGCCTGGCTGCTGCTGCCTGCCATGGCCTTTCCTGA
ACAACGATCGCAACAACG------ACAACAACAACAC---CAATCACAACTCGGTATGCTTTTACCTATCTGTTTGTTTT
GCCCGTCTTGTCTGGAGATATTTGGTGCAGTTGCGGTGATATAGACATGTGATGGATTTAGTCATGGTGTTGGTGAAATG
CACGGAACTTGTGTTGCGGAGTGGCAGTTGGTGGGTGGATTTTCCATGTTCGTGATCCTCGCATTCGGCAGTCATGTCCC
AGGATCGCATTGCCGTGATCTCAGAATAGCAAATGTTCATTATTGTGTTCATTTAATTGCGTAACTTGTAGCGGCTAACT
GTAAATTAGTAGAT----ATAAACCATGAACGGATATTAGTAGTTTGCATGGAGCCTATCCAGTTTTATTACCCTGAGAC
TTGTTTGACAGTCAGTTCAGAGGTGCTATTCTCAGAAGTTGGAACTGGACAACTCGGTACTGAATAAGTAAGATACTAAC
ACCCAACTACAAATGGTCTGTCCGTGTAGCTTCAAAATTATTACAGTACTAAACAATTTGGTATACTTA---ATGATGTC
ACATTTGTCCAGAATAATTGCATGTTCTGTCTGGACCTTCTGTTTCAGTCAGCTGCTATGCACTAGTACCATCTAAATGT
TTTATCCCCCCACAGGGCCCTCCTGCTCGTCAAAGAGCGAATACACGGGTTGCGCCTGTTCAGGGAAGGGTTCCTCCTGC
GGGTTCACGGCAGGATGATTCAATGAACACCTTCCGCTGCCCTCCTAGGCCTTTGCCTTATGATGATCCTCAATTCAGAC
ATCAAACGGAGCGCCACCCGCTGGTGGCAGGACGTGACAAGGCTTCAACACAATCCCAGAAATCTAATCTACTTGAAGAA
AGCAATGATGCTGATACCAGATCAACTTGTGCCGATGAGAAGGCTGATGGATCGTCCCTGAAAGCTGAGTCGGGAGGTAA
AAAACTCGGGGGAGCTAAGGTCTGTGTTCCTTCTGATTGTGAGGATGACTGTCCAATATGCCTAGAAGGTCAGTGAAAAC
AATTACCTGTTTTACAACTCCTTCAATATTCAGAATTGCAGCATCTTGTA-----GCTCAGTGGGATTTAAAATTTACAC
TTC---GCATATAAAGTACTCCCTCTGTAAACTAATATAAGAGCATTTAGATTACTAAAATAGTGATCTAAACGCTCTTA
TATTAGTTTACGGAGGGAGTACACGAGAAAGAGAGCATCTGAAACATTCTTGTGTCAGTTGCAAAAATA-----------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TACGTATT
TGTTCATTTTAATCATTATTGTTAATGA--ATATGTCTTAATTAATCAGTTCTCATTGATAGCTAGTTTGTTACCCTTTT
ATCAAATTGCTGCCACGTACGTGAATACATCTACTCTGGCAATGGTAAAGGAAAACAAATGTAGCATTCCATAACCCTGA
TATTATATCCTTGTACTTTGTGCACAGTTGTTCGCTCTTCTTGTCTTCTGATTGTTTCTTATTTGCAGAGTATGATTACG
AGAATCCAAAGGTAGTGCTTCAGTGCAACCATAATTTCCATCTTAGTTGCATTTACGAGTGGATGGAAAGAAGTCAATCT
TGTGCTGTCTGTGCCAAGGTATTAAACTTCTACCTAAAACCCCTTC-TTTCACCTGAGAAGGGAAGCATTAGTTGGTATT
TGATCTAATCTGGCAAAAATCATGTCAAACATTTTGACTGCTGAACTGCTCCATTGTAGGTAATGTTGTTTAAAGAGGAC
CAATAACCATGCTGGCTGCAATTCTTTACACATACTGAAGACCCAGGACTGAATCGCTTAGGTTGTGTACATAGCA-CGG
TGAAATCATGTCGCTAGATTGTTTGCTGAAACCTCTAGCGGTGCGAAGATTCGGCATTTCCTTCTAGAGCAGACAATTCA
TGTTTCTCTTTTCTCCACGAATTTGATGATTTCTGCCAACGCACACCTGGCATTTTTCAAACTGATGTTACTTTGGTGAA
CGGTGGGTGATCGCATTGGCTTGACATGCTCAAGTATAATACTCTGGAAACTTCACAAGTTACATCCACTTCTTTGCCAA
TAGCTATTTTGACATCATTTCAACAGCTTCCATCTAGAACCATGTAGTTCGAGAATCAAGATGCAGTGTATGCTCACCCC
TAACATATCGTTATTATTGAATGAG------------------------------TAGTACATGATTTATCACAAGTTTA
GGAAGTTCAAATTCAGCATGATTTATCAAGTAGAAACAGAACTGAGGTTTCTGAGACTTGAAATCACTAATTAATTAGGG
GATACCCCTTGGAAAGGTCAATACCACCTCCTCTGGTGGTGACAAGTGGGCATGTGCACCACTTATCGCAACCACGGAGT
TTTGGTGGGTTTTCTCACCTCGCGCTCGAGGATGTGAGGTTTTCTGTTTGTGTTTTT-----------TT--------CT
TAGATTTGTTTTTTTCAAAATGATTTATCACTCGAACCGCGTGTCCAAATCATCAACCGCTTTCACCGCTGTGCTTCTCG
CGTCTAGGTTTTCAAAACTCGATCCATGTTGATAGTTTTCGATGAACATTTTTTTCTGCAAAATCTATGCTCCAAGCTGT
ACTAGTCCGTGCTTCAAAACTGACTAAAATGTGCTTCAAACAATACTAAGGTGTACTTCACTTTTTTTGTGACCCACAGT
CGCTTTTTCACACGAGTAGCACAATGGGTGCTTCACATGAAAAACCAAAATAAAAGAGCCGGAGATAGAAAAAACTGCAA
ATAGAAAATACATAAATAAAAAACAAAGATATTGTCGAAAGTATTAAACTTCTACCTAAAACCCCTTCTTTCACCTGAGA
ATGGAAGCATTAGTTGATATTTGATCTGATCTGGCAAAAATCATGTCAAACATTTTGACTGTTGAACTGCTCCATTGTAG
CCTGTAGGTAATGTTGTTTAAAGAGGACCAATAACCATGCTGGCTGCAATTCTTTACACATGCTGAAGACCCAGGAGTGA
ATCGCTTTAGTCAGTGAAATCATGTCACTAGATTGTTTGTTGAAACCTCTAGCAGTGCGAAGATTCGGCTTTTCCTTCTA
GAGTAGACAGTTCATGTTTCTCTTTTCTCCACGAATTTGATGATTTCTGCCAACACACACCTAATATTTCAATTACTTTT
GTGAACAGTGGGTGATCGCACTGGCTTGACATGCTCAACTATGATACTCTGGAAACTTCACAACTTGCATCCACTTCTTT
GCCAATAGCTATTTTGACATCATTTCAATAGTTTCCATCTAGAACCATGTAGTTTTAGAATCAAGATGCAGCGTATGCTC
ACCCC
>chr3D_143
TTTCACGAAG----------------------------------------------------------------------
-----------------------------------------------------------------------AAAAGCAGA
GTATCCAGAGATAAAAAGCAGG----GGGGCCTTGCAAAAGGCAGCGAAGGGTGGTCCGCCAGGGAAAAATCATACTAGT
CAGCTTCCAACCCCACTTA---CCAGCCGGCAGCGCTAATCTCGTAACAAAATCCACCAATAGGATTCTAAGCTTTATTT
CCCAGAGATTTTTATTCTATCTCTCTCTTTCCGCCGCTCCGCTCGTGCGTTCGGCGCAACAGCAAACCGATCGCAATGCC
TTGCGTGCCAGCTCCAATCTCCTAGCCGCCGCCGCTCGCCCGCTCTCCAATCCGCCTCCATCTCCAACCGCAATCCTCCC
CCGATTCTTCCGAGTTCAGTTACCACTGCCCGTACCACCACCACTACTTGAACCCACCGCCGTCAATCTGCGTCGGGG-T
TTAGCAGCTCCGCCCGCCCGTCCCCAAAGGTCCGCTTTTTCTT----TCTCCTTCACGAACTCGCAGTAAAAAGGAAATT
CCGACTCCATCTTGAGTAGCGGCAGCGGTAGCAGAATTTAACAGGCGCCGCATCCTCGCCGTCGTCGCCAAAGATGTGAC
TCTGTTTTTCGATTATTATTGATTCTCTCATCGGCGGCGTAGAGCCTAAATTTCCGGCGTAACT--TTGGGTTGTCTCGC
AGGTCCAGCGGCGAAGAGTAAAGGAACCTGCCCGGATTCAAAGCGGCGGCGGGATCGGATTCCATCACTTGGATAAATTG
CCACCGATCGGCTTTTTTCCTTCCTTCCGTCCGTCGGTGTGCCGGTGCGGCGGCCGGGCAGCGAGAGGGGGAGTCCGAGG
ACAGGTGGGAACTAGAAGGCCGGTACTGCTGGCTCCTCCGTTTGGTTTGCAGGGGAGGGGTTCAGTCAGATGGGGGCCAT
CATGTGCTGCTTACGCGGCCGCGGCCCCGGCCCCGGCGACGACGCGCCTGGCTGCTGCTGCCTGCCATGGCCTTTCCTGA
ACAACGATCGCAACAACG------ACAACAACAACAGCAACAATCACAACTCGGTATGTTTCTACCTATCTGTTTGTTTT
GCCCGTCTTGTCTGGAGATATTTGGTGGAGTTGCGGTGATATAGACATGTGATGGATTTAGTCATGGTGTTGGTGAAATG
CACGGAAATCGTGTTGCGGAGTGGCAGATGGTGGGTGGATTTTCCGTGTTCGTGATCCTCGCATGCGCTAGTCATGCCCC
AGGATCGCATTGCCGTGATCTCAGAATAGCGGATGTTCATTATTGTGTTCATTTAATTGCGTAACTTGTATCGGCTAACT
GTAAATTAGTAGTAGTAGATAAACCATGAACGGATATTAGTAGTTTGCATGGAGCCTATCCAGTTTTATTACCCTGAGAC
TTGTTTGACAGTCAGTCCAGAGGTGCTATTCTCAGAAGTTGGAACTGGACAACTCGGTACTCTATAAGTAAGATACTAAC
ACCCAACTACAAATGGTCTGTCCGTGTAGCTTGAAAATTATTACAGTAGTAAACAGTTTGGTATAATTA---ATGGTGCC
ACATTTGTCCATAATAATTCCATGTTCTGTCTGGACCTTCTGTTTCAGTCAGCTGCTATGCACTAGTATCATCTAAATGT
TTTATTCACCCACAGGGCGCTCCTGCTCGTCAACGAGCGAATACACGGGTTGCGCCTGTTCAGGGAAGGGTTCCTCCTGC
GGGTTCACGGCAGGATGATTCAATGAACACCTTCCGCTGCCCACCTAGGCCTTTGCCTTATGATGATCCTCAATTCAGAC
ATCAAACGGAGCGCCACCCGCTGGTGGCAGGACATGACAAGGCTTCAACGCAATCCCAGAAATCTAAACTACTTGAAGAA
AACAATGATGCTGATACCAGATCAACTTGTGCCGATCAGAAGGCTGATGGACCGTCCCTGAAAGATCAGTCGGGAGGTAA
AAAAATCGGGGGAGCTCAAGTCTGTGTTCCTTCTGATTCTGAGGATGACTGTCCAATATGCCTAGAAGGTCAGTGAAAAC
AATTACCTGTTTTACAACTCCTTCACTATTCAGAATTGCAGCATCTTGTATTTTCGCTCAGGGGGATTTACAATTTACAC
TTCTTCGCATATATCATATAA-----------------------------------------------------------
-----------------AGTACACGAGAAAGAGAGCATCTGAAACATTCTTGTGTCAGTTGCAAAAATA-----------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TACGTATT
TGTTCATTTTAATCATTATTGTTAATGAATATATGTCTTAATTAATCAGTTCTCATTGATAGCTGGTTTGTTACCATTTT
ATCAAATTGCTGCCACGT----GAATACATCTACTCTGGCAATGGTAAAGGAAAACAAATGTAGCATCCCATAACTCTGA
ATTTATATCCTTGTACTTTGTGCACAGTTGTTTGCTCTTCTTGTCTTCTGATTGTTTCTTATTTACAGAGTATGATTACG
AGAATCCAAAGATAGTGCTTCAGTGCAACCATAATTTCCATCTTAGTTGCATTTACGAGTGGATGGAAAGAAGTCAATCT
TGTGCGGTCTGTGCCAAGGTATTAAACTTATACGTAAACCCCCTTTTTTTCACCTGAGAAGGGAAGCATTAGTTGGTATT
TGATCTAATCTGGCAAAAATCATGTCAAACATTTTGACTGCTGAACTGCTCCATTGTAGGTAATGTTGTTTAAAGTGGAC
CAATAACCATGCTGGCTGCAATTCTTTACACATGCTGAAGACCCAGGACTGAATTGCTTAGGTTGTGTACATAGCATCGG
TGAAATCATGTCGCTAGATTGTTTGCTGAAACCTCTAGCGGTGCGAAGATTCGGCTTTTCCTTCTAGAGCAG----TTCA
TGTTTCTCTTTTCTCCACGAATTTGATGATTTCTGCCAATGCACACCTGGCATTTTTCAAACTGATGTTACTTTGGTGAA
CGGTGGGTGATCGCATTGGCTTGACATGCTCAAGTATAATACTCTGGAAACCTCACAAGTTACATCCACTTCTTTGCCAA
TAGCTATTTTGACATCATTTCAATAGTTTCCATCTAGAACCATGTAGTTCTAGAATCAAGATGCAGCGTATGCTCACCCC
TAATGTATCGTTATTATTGAATGAGCAGTACATGATCTATCACAAGTTTAGAAAGT------------------------
------TCAAATTGAACATGATTTAACAAGTAGAAACAAAATTGAGGTTTCTCAGACTTGAAATCACTAATTAATTAGGG
GATACCCCTTGCAAAGGTCAATACCACCTCCTCTGGTGGTGACAAGTGGGCATGTGCACCACTTATCGCAACCACGGAGT
TTTGGTGTGTTTTCTCACCAAGCGCTTAAGGATGTGAGGTTTTCTGTTTGTGTCTTTTTTTTTTCTTCTT--------CT
TGGATTCGTTTGTTTCAAAATGATTTATCACTCGTACCGCTTGTCCAAATTATGAACCGCTTTCACCTTTGTGTTTCTCG
CGCCTAGGTTTTCAAAACTCGATCCACTTTGATAGGTTTCGATGAACAG--TTTTCTGCAAAATCTATGCTCCAAGCTGT
ACTAATCCATGCTTCAAAACTGACTAAAATGTGCTTCAAACTATACTAAGGTGTGCTTCACTTTTTTTGGGACGCACGGT
CGCTTTTTCACATGAGTAGCACATGT-GTGCTTCACACGAAAAACCAAAATAAAAGAACCGAAGATAGAAAAAACTGGAA
ATAGAAAATACATAAACAAAAAACAAAGATCGAAAAAATGGAAATTAAAAAACCA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>SNPs
S-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------SSSSSSSSSS---------
-------------S-S----------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------S-----------------------------------------------------------------------
-------------------------------------------SSSS----------S----------S-----------
-----------------------------------------S-----------S--------------------------
-----------------S--------------------------------------------------------------
---------------------------------------------S----------------------S-----------
----------S-----------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------SSSSSS--------------------------------------------------------
-SS-----------------------------------------------------------------------------
------------------S----------------------------S---SS---------------------------
----------------------------------------------------------------S-----SSS-------
------------------------------------------------------------SS------------------
------------SS--------S---------------------S-----------------------------------
------S------S--S-S--------------------------------------------------SSS--------
----------------------------------------------------------------S---------------
-------------------S------------------S-----------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
---S--------------------------------------------S-------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
------------------------S----------S------------S--------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S---------------------------------S------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------------------------------------------S----------------------------
------------------------S-------------------------------------------------------
---------------S------------------------S---------------------------------------
--------------------------------------------------------------------------S-----
--S-----------------------------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------S-----------------------
------------------S---------------------------------------------------SSSSSSSS--
--------------------------------------------------S-----------------------------
---------------------S---------S-------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>forward_489
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GCAATCCTCCC
CCGATTCTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>reverse_2543
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ACGGAGGGAGTACGTGTT
TG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>forward_1328
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TGGTGGGTGGATTTTCCGTC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>reverse_2545
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GGAGGGAGTACGTGTT
TGTTCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>forward_1619
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
ACCCAATTACAAACGGCCA-------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>reverse_3657
--------------------------------------------------------------------------------
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--------------------------------------------------------AACCAACCACGGAGTTTTGG----
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-----
