>input_sequence_41377
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-------------------------------GGTCCCAAAACCCTAGCAGCCTCCCACCCGGCGCCATCCCACCCCCGCC
GCAGCCTCCTACCCGGCGCCATCGCACCCCCGCCGCAGCC---GCATCAGCCGTAGCCCGATGGAAGTCGACAGAGCCCC
GGCCGCTGCCGCGGGAGGAGGATCCTCCTCTGGCGCGATGGCGGTGGACGCGGCCGGCGGCGTGGAGAAGCCGCGGTTCG
ACGCGCTGATGCCAAGCGAGATGAGCGGCGGGAGGCCACAGTACCGCAAGGTCCAGGTGCCGCCGCACCGCTTCGCGCCG
CTGAAGAAGGCGTGGCTGGAGATCTACACCCCCGTCTACGAGCACATGAAGGTCGACATCCGCATGAACCTCAAGGTTGG
TGACCCGGCTCAGTTTTCTAGTCTGTCGTTGCAGCGTCCTAATAGTTAGGG---------GAAGTCGTGTGACCTGTGTT
CGTTCTCTCCCTGTCATTTAAAGCACGCCGTTCGGTGAGTAATTATGGAGAAATTTGTTGGTCTGTTGATGATCTTATA-
TCCTGTACGGTTTGGTTCAAGCACTTGTATATCATGGGGAAAATCCGCACTAGCTTAAAGCACCTGTGGTTAGACATTCG
GGTCAAAAAGACACGTGATGTATGTCATGTTCCTTCAGTTCACTGTACTAGCACTTTTATCAGGATAAAACATGTTCTGT
TTTCAAACTTCAGTGTTCAGTATTTTAATTCCCTGTGCACTTGACCTGAAAAAATGGGAGGTAGTCATGATAGCCATGGT
GATAAAATAGACTATTTTTCGAACTTGATTGTTCAGTGTTTTAGCAGTATGTATTGAATCTGATCGATTAGCTTTGATTA
GAGGATTCTTCATGAATTCGATCAATTGGATAAACGCTAGCAGTATGTCTTGAAGCAAGTAAACGTCTGCTGGCTATCCT
GATTATTTGCATATACATATTTATTTCAGTTCATCATGATGTGAAGCTACTGATTTGAATTATTGCCACCAACTGAGCAC
CTGACATGATCAATTAGCTTAGTGGTGTTCTTATTTTTGTGGGAAAGCATAGTGTTCTAGAAGAATACAGATACACGTGA
CTCAATTGGTTTGCCTTGTGGCCGGTGTTTCTCTCATGGTTTTTGGGTCTGCAGGGAGTTCTTCCAGTGCTTATTATTGG
GGCAGAACTTGTCAGATA--TCTGAATGTTAAGCATTTCTCTGTCTCCTTTGCAGCAATTTCATTAGTCTGTTTTGTTTT
TT--ACAGGCAAAAAGGGTCGAGCTGAAGACGAGGCATGATACACCAGATGTGAGCAACCTTCAGAAGTGCGCGGACTTC
GTGCATGCTTTTATGCTTGGATTTGACATTGCCGATGCCGTTGCCTTGCTTCGTCTTGATGACCTGTATGTGGACTCCTT
TGAGATCAAGGATGTGAAGACACTCAGAGGGGAGCATCTGTCACGTGCCATTGGGCGCCTGTCAGGGAAAGGAGGCAAGA
CCAAGTATGCCATCGAGAACTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCACATACTTGGATCCTTTGTT
AACATCAAGGTTGCCAGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCCGGCAAGGTCTATTCTAAGCTTAGGGC
TGTATCTGCTAGGTTGGCAGAAAGGTATTAGTTGAGTCTGGGTCACATTATATAGCTGCAGTTTTGGCCTTGTAAGGTGT
TGTATCCGCTGATTTGTGTCCCTGTGCTATGCATTGTCTTGATACGAAGAACAACTTCGAAGTGCCGAGAGATCTGTGGT
GATATTCCTTGTGTTCTGTTCTCGGCTTTTTCTTGAGAAAATGCTGTTCTGATACACGTTACTATATGTTTGCTTCGACT
ACTATTTATATATGCCAAATACTGTTGTGTAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr3A_1_TraesCS3A01G152000
ATGACATATGTTGCGAAGGAGGCAAAGGTGATCCCAGACGCGTAATTACACGCAAATAGGATCATCATCAGCCGCCTTAC
CATTTAAGGATAAGCTAACCGAGCCCTCATCAGTTTAAGAAAAGGGTAAATAGCATTTGTTATGTGGGCATTCCACTTAC
TGTAAGCTAGTATGTGAAGCTGTCTTGTAAGAACATGTG-------TCTGAAGTAACCAGAGCACGGAAAGAGTCGAGTA
AGTCGACAGGCTTTGGTCGTCTCTTGTACATGG--ATG-----TAGTAGTTATGATCCTTATGAACT-------------
-----------------------------------------------------------------CATGGTTCATCAGTG
TAAAGTTCAGGATATGTATGTCCCTGTTCTTGTAGATTTATACATATT--------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTTGTATAGAAAGAA
AGCAAGACTCGGAAACGTGAACTAAAGAAGTGGATCTTTGTACACATGGAGTAAATTTCCACTGTGGCTTCTTGATC---
------------------------------------------TATACAGGAGTAAATTTCCACTGTGACATTGTGTGTGG
ATCAACGGA-CCACAGAAAATGCTAATGACTCCAGACATTTGCGGCAACGAATTATCCTTCTTCTTTTTTTTTTTGCGAG
GAGCGCATCGAATTATCCCATCATGCATATCACCCAAAAAGTCCAATGCCAGAAAGGCTTGAC-----------------
-ACATCCCAATTACGAAAGCTTCAAATGTGCACATCATCAGCATGTTTTTGAATTCCCGAACTTTTTTGTCAAATCCGTG
AATAATTTTTCAACTCATGAAC----TTTTTTTCAAATCTGCGAACAATTTTTTAGTCCTGAACATTTTTTTAGTTCATT
AACAATTTTTTAATTCGTATTTTTTTTCAACTTAAAAGTAAACAGACCGACAAAAAAAC-AAAAAACATGCGTGAGTTTT
CTGTCGCTAGCTCTGACTGTGCTCGCTGGGCCAGGCCCATGTCGCACAGGGGAAGGAACAGT------------------
-------------------------------CCATCGTCTTGTGCTGGCCCAAACT---CCTTCCACAGCCCAATATAAG
CCTCTCCGTTCCGAAGTTT-TCACTCCTCTCGGTCCCAAAACCCTAGCAGCCTCCCACCCGGCGCCATCCCACCCCCGCC
GCAGCCTCCTACCCGGCGCCATCGCACCCCCGCCGCAGCC---GCATCAGCCGTAGCCCGATGGAAGTCGACAGAGCCCC
GGCCGCTGCCGCGGGAGGAGGATCCTCCTCTGGCGCGATGGCGGTGGACGCGGCCGGCGGCGTGGAGAAGCCGCGGTTCG
ACGCGCTGATGCCAAGCGAGATGAGCGGCGGGAGGCCACAGTACCGCAAGGTCCAGGTGCCGCCGCACCGCTTCGCGCCG
CTGAAGAAGGCGTGGCTGGAGATCTACACCCCCGTCTACGAGCACATGAAGGTCGACATCCGCATGAACCTCAAGGTTGG
TGACCCGGCTCAGTTTTCTAGTCTGTCGTTGCAGCGTCCTAATAGTTAGGG---------GAAGTCGTGTGACCTGTGTT
CGTTCTCTCCCTGTCATTTAAAGCACGCCGTTCGGTGAGTAATTATGGAGAAATTTGTTGGTCTGTTGATGATCTTATA-
TCCTGTACGGTTTGGTTCAAGCACTTGTATATCATGGGGAAAATCCGCACTAGCTTAAAGCACCTGTGGTTAGACATTCG
GGTCAAAAAGACACGTGATGTATGTCATGTTCCTTCAGTTCACTGTACTAGCACTTTTATCAGGATAAAACATGTTCTGT
TTTCAAACTTCAGTGTTCAGTATTTTAATTCCCTGTGCACTTGACCTGAAAAAATGGGAGGTAGTCATGATAGCCATGGT
GATAAAATAGACTATTTTTCGAACTTGATTGTTCAGTGTTTTAGCAGTATGTATTGAATCTGATCGATTAGCTTTGATTA
GAGGATTCTTCATGAATTCGATCAATTGGATAAACGCTAGCAGTATGTCTTGAAGCAAGTAAACGTCTGCTGGCTATCCT
GATTATTTGCATATACATATTTATTTCAGTTCATCATGATGTGAAGCTACTGATTTGAATTATTGCCACCAACTGAGCAC
CTGACATGATCAATTAGCTTAGTGGTGTTCTTATTTTTGTGGGAAAGCATAGTGTTCTAGAAGAATACAGATACACGTGA
CTCAATTGGTTTGCCTTGTGGCCGGTGTTTCTCTCATGGTTTTTGGGTCTGCAGGGAGTTCTTCCAGTGCTTATTATTGG
GGCAGAACTTGTCAGATA--TCTGAATGTTAAGCATTTCTCTGTCTCCTTTGCAGCAATTTCATTAGTCTGTTTTGTTTT
TT--ACAGGCAAAAAGGGTCGAGCTGAAGACGAGGCATGATACACCAGATGTGAGCAACCTTCAGAAGTGCGCGGACTTC
GTGCATGCTTTTATGCTTGGATTTGACATTGCCGATGCCGTTGCCTTGCTTCGTCTTGATGACCTGTATGTGGACTCCTT
TGAGATCAAGGATGTGAAGACACTCAGAGGGGAGCATCTGTCACGTGCCATTGGGCGCCTGTCAGGGAAAGGAGGCAAGA
CCAAGTATGCCATCGAGAACTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCACATACTTGGATCCTTTGTT
AACATCAAGGTTGCCAGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCCGGCAAGGTCTATTCTAAGCTTAGGGC
TGTATCTGCTAGGTTGGCAGAAAGGTATTAGTTGAGTCTGGGTCACATTATATAGCTGCAGTTTTGGCCTTGTAAGGTGT
TGTATCCGCTGATTTGTGTCCCTGTGCTATGCATTGTCTTGATACGAAGAACAACTTCGAAGTGCCGAGAGATCTGTGGT
GATATTCCTTGTGTTCTGTTCTCGGCTTTTTCTTGAGAAAATGCTGTTCTGATACACGTTACTATATGTTTGCTTCGACT
ACTATTTATATATGCCAAATACTGTTGTGTAACTTGTGTTGTCTCTTTTTCTTCAGTGTGTGTATTTTATACTCTATA--
ACATGGCTATGGATGTGGAGAATGATCAAGTTAACCTAGAATCTTGAATTGTCAAATTTGGTCGA-TTTACCCTTACAAA
TTGACCACAATAATGGTTGTGAATCCTACAGAAAGTTCTGCATTGCTCTTGAGCAGTATGGCGAGCCCTTCTCACAGGAG
GCTCACCCAAAACATATAGCATTGGTGCAGTACTTTATTGCCATGTAAATCCATCTTAGCTTGGCTATGTTTCTTTGGAC
GCCATAGTTTCTTTCTTTGGTGCTTTGTTAATCCAATCTTGGATTACCATCCTGTGCGTGCGCTACGGTGCTTCTGCAGA
GTTTGAGCTGGATAACAGTTCTCAAGGCCTGTTCGGAATTTCACCAGCTCCACGAAATTTCAGGAGTTGTGGAGTTAGGA
AATAGCTGCTTCGCAGTTTTCAACTGCAACTCCACCAACTCCGGGAAATTTCAGGAGTTGTGGAGTGGAGGTTCTCCGAA
CAGGGCCTCAATCTCCTGCCTCCAATGGTCCTTTACACTACAGCGACACCTATAACCAATCCGTCGCACTTATGTCGTCA
CAGTCAGTATAAGTTACCCTTAGGATCAGACTTTGGAGAAGGTAAACATGTAGTCTACATATGGTTATCCTTATGATAGC
-TATGTATTATTACTGTCTCAAGATCGGACAATTTAACTGCAGC--------------------ACATGGGCAGTGGAGA
GCCATAAAGGGTTTGGTCTGCATCTCCTGCTGCAGTATGTTATCCCTGTAGTATCTGCTACATGAAGTTTATAGAAGGAT
TTACATATTTGGTATATGCAAATGTTTGGACAAGATGCAGAAGATGTGATATGCATCCCTTCCGGCAACACCATGTAATC
TCTGCTACAGCGAAGGTACCTACTGGTACTCTGTTCTAATACCTATTTTCTGATTCTTATTCCTTGGGCTTAGAAATCGT
TAACTGGGCAACATTC
>chr3D_1
ATGACATATGTTGCGAAGGGGGCAAATGTGATCCCAGACGCGTAATTACATGCAAATAGGATCATCATCAGCCGCCTTAC
CATTTAAGGATAAGCTAACCGAGCCCTCAGA---TTCAGAAAAGGGTAAATAGCATTTGTTATGTGGGCATTCCACTTAC
TGTAAGCTAGTGTGTAAAGCTGTCCTGTAAGAACATGTGTCTGAACTCTGAAGTAACCAGAGCACGGAAAGAGTCGACG-
--------GGCTTTGCTCCTCTCTTGTACATGG--ATGTACTCTAGTAGTTATGATCCTTATGAACTCCCGGGTGTCGCT
TTGTACCCTTCAAAAATGTATAGCAACTT-AGCAACACGGTTTAGAACTGGAAGGAGTCGCCATACATGGTTCATCAGTG
TAAAGTTCAGGATATGTATGTTCCTTTTCTTGTAGATTTATACTCCCTCTGTTTCTAAATATAAGTCTCTTTAGAAATTT
CAATATGGACTACATACATAGCACAATGAGTGAATCTACACTTTAAAATACGTCTATATACATCCGTGTGTAGTTCATAT
TGAAATATCTTAAAAGACATATATTTAGGAACGGAGGGAGTACATACCATGAGAGGACAAAAA-GGTTGCATAGAAAG-A
AGCAAGACTGCGAAATGTGAACTAAAGATGTGGATTTTTGTACACATGGAGTAAATTTCCACTGTGGCTTCTTGATGGGA
AAACAACACTTGACATCGCATGATCGAAACATAATGCTAATGTATACAGGAGTAAATTTCCACAGTGACATTATGGGTGG
ATCATAGGACCCCCTGAAAATATGCGG------------------CAA--------------------------------
--------CGAATTATCCCATCATGCATATCACCCAAAAAGTCCAATGCAA----------AC-----------------
-ACATCCCAATTACAAAAGCTTCAAATGTGCACATCATCAGCATCTTTTTGAATTTGTGAAC-TTTTTGTCAAATTCGTG
AATAAATTTTCAATTCATGAAC----TTTTTTTCAAATCTGCGAACAATTTTTT--------------------------
-----------------------TTTTCAACTTAAAAGTAAACAGACCGATAAAAAAACAAAAAAACATGCGTGAGTTT-
CTG-------------------TCGCTGGGCCAGGCCCATGTCGCGCAGGGGACGCGAACGAGCTGCTCTTTTTTTGTGT
TTTTGGCGAAGGAACAATGAATGAAGCAGCCCCATCGCCTTGTAGTGGCCCAAACACAGCCTTCCACAGCCCAATATAAG
CCTCTCCGTTCCAAAGTTTTTCACTCCTCTCGGTCCCAAAACCCTAGCAGCCTCCCACCCGGCGCCATCCCACCCCCGCC
GCAGCCTCCTACCCGGCGCCATCCCACCCCCGCCGCAGCCGCAGCAA---CCGTAGCCCGATGGAAGTCGACAGAGCCCC
GACCGCTGCCGCGGGAGGAGGATCCTCCTCCGGCGCGATGGCGGTGGACGCGGCCGGCGGCGTGGAGAAGCCGCGGTTCG
ACGCGCTGATGCCAAGCGAGATGAGCGGCGGGAGGCCACAGTACCGCAAGGTCCAGGTGCCTCCGCACCGCTTTGCGCCG
CTGAAGAAGGCGTGGCTGGAGATCTACACCCCCGTCTACGAGCACATGAAGGTCGACATCCGCATGAACCTCAAGGTTGG
TAACCCGGCTCGGTTTTCTAATGTCTCGTTGCAGCGTCCTAATAGTTAGAG---------GAAGTCGTGTGACCTGT---
-GTTCTCTCCCTGTCATTTAAAGCACGCCGTTTGGTGAGTAATTATGGAGAAAATTGTTGGTCTGTTGATGATCT--TA-
TCCTGTACGGTTTGGTTCAAGCACTTGTGTATCATGGAGAAAATCCGGACTAGCTT-------------TTAAACATTTA
GGTCAAAAATACACCCGATGCATGCCATGTTCCTTCAATTCACTGTACTAGCACTTTTATCAGGATAAAGCATATTCTGT
TTTCAAACTTCAGTGTTCAGTATTTTAATTCCCTGTGCACTTGACCTGAAAAAATGGGAGGTA-TCATGATAGTCATGGT
GATAAAGTAGACTATTTTTCGAACTTAATTGTTCAGTGTGTTAGCAGTATGTATTGAATCTGATCGATTAGCTTTGATTA
GAGGATTCTTCATGAATTCGATCGATTGGATAAACGCTAGCAGTATGTCTTGAAGCAAGTAAACGTCTGCTGCCTATCCT
GATTATTTGCATATACATATTTATTTCAGTTCATCATGAT--GAAGCTACTGATTCGTATTATTGCCACCAACTGAGCAC
TTGACCTGATTAATTAGCTTAGTGGTGTTCTTATTTTTGTGGGAAAGCATAGTGTTCTAGAAGAATACAGATACACGTGA
GTCAATTGGTTTGCCTTGTGGCTGGTGTTTCTCTCATGGTTTTTGGGTCTGCAGGGAGTTCTTCCGGTGCTTATTATTGA
GGCAGAACTTGTCAGATA--TCTGAATGTTAAGCATTTTTCTGTCTCCTTTGCAGCAATTTCATTAGTCTGTTTTGTTTT
TT--ACAGGCAAAAAGGGTCGAGCTGAAGACAAGGCATGATACACCAGATGTGAGCAACCTTCAGAAGTGCGCGGACTTC
GTGCATGCTTTTATGCTTGGATTTGACATTGCCGATGCTGTTGCCTTGCTTCGTCTTGATGACCTGTATGTGGACTCCTT
CGAGATCAAGGATGTGAAGACACTCAGAGGGGAGCATCTGTCGCGTGCCATTGGGCGCCTATCAGGGAAAGGAGGCAAGA
CCAAGTATGCCATCGAGAACTCTACCAGGACTCGCATAGTTATCGCTGATACGAAGATCCACATACTCGGATCCTTTGTT
AACATCAAGGTTGCCAGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCCGGCAAGGTCTATTCTAAGCTTAGGGC
TGTATCTGCTAGGTTGGCAGAAAGGTATTAGTTGAGTCTCGGTCACATTATATAGCTGCAGTTTTGGCCTTGTAAGGTGT
TGTATCCGCTGATTTGTGTCACTGTGCTATGCATTGTCTTGATACGAAGAACAACTTGGATGTGCCGAGAGATCTGTGGT
GATATTCCTTGTGTTCTGTTCTCGGCTTTTTCTTGAGAAAATGCTGTTCTGATACATGTTA---TATGTTTGCTTCGACT
ACTCGTTCTATATGCCACATACTATTGTGTAAGCTGTGTTGTCTCTTTTTCTTTGAC---TGTATTTTATACTCTATATA
ACATGGCTGTGGATGTGGGGAATGATAAAGTTAACCTAGAATGTTGAATTGTCAGATTTGGTCCATTTTACCCTTACAAA
TCGACCACAGTAATGGTTGTGAATCGTACAGAAACTTTTGCATTTCTCTGGATCAGTATGGCGAGCCCTTCACACAGGAG
GCTCACCCAAAACATATAGCATTGGTACAGTAATTTATTGCCATGTAAATTCATCTTAGCTTGGCTATGTTTGTTTAGAT
GCCATAGTTTCTTTCTTTGGTGCTTCGTTCTTCTAATCTTGGATTACCATCCTGTGCATGCGCTGCGGTGCTTCTGCAGA
GTTTGAGCTGGATAACAGTG------------------------------------------------------------
--------------------------------------------------------------------------------
------CTCAATCTCCTGCCTCCAATGGTCCTT----CTACAGCGACACCTATGACCAATCTGTCTCTCTTACGTCGTCA
CAGTCAGTAAGAG------TTAGGATCAGACTTT--AGAAGGTAAACATGTAGTCTACATATGGTTATCCTTATGATAGC
TTATATATTATTATTGTCTAAAGATCCGACAATTTAACTGCAATCCCTATGGTTGATACAGCGGACATGGGAAGCGGAGT
GCCATAAAGGGTTTGGTCTGCTTCTCCTGCTACAGCATGTTATCCCTGTAGTAGCTGCTACATGAAGTTTATAGAAGGAT
TTACATATTTGGTATATGTAAATGTTGGGACAAGATGCAGAAGATGTGATATGCATCCCTTCTGGCAACACCATGTAATC
TCTGCTATAGCGAAGGTACCTGCTGGTACTCTGTTCTTATACCTATTTTCTGATTCCTATTCGTTGGGCTTAGAAATCGT
TAACTGGGCAACATTC
>chr3B_1
ATGACATATGTTGCGAATGGGGCAAAGGTGATCCCAGACGCGTAATTATGCGCAAAGAGGATCATCATCAGCCGCCTTAC
CATTTAAGGATAAGCTAACCGAGCCCTCAGA---TTAAGAAAAGGGTAAATAGCATTTGTTATGTGGGCATTCCACTTAC
TGTAAGCTAGTGTGTAAAGCTGTCTTGCAAGAACATGTG-------TCTGAAGTAACCAGAGCATGGAAAGAGTCGACT-
--------GGCGTTGCTCGTCTCTTGTACATGTACATG-----TAGTAGTTATGATCCTTGTAAATTCCCGGGTGTCGCG
TTGTACCCTTCAAAAATGTATAGCAACTTTAGCAACACAGTTTAGAACTGGAAGGAGTTGCCATACATGGTTCGTCAGTG
TAAAGTTCAAGATATGTATGTCCCTGTTCTTGTA----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GAATACATACCATGGGAGGACAAAAAAGGTTGTATAGAAAG-A
AGCAAGACTGGGAAATGTGAACTAATGAAGTGGATCTTTGTGTACATGGAGTAAATTTCCACTGTGACTTCTTGATGGGA
AAACAACACTTGACCTCGTACGATGGAAGCATAATGCTAATGTATACAGGAGCAAATTTCCACACTGACATTGTGGGTGG
ATCATAGGACCCGCAGAAATTGCTAATGACTCCAGACATATGCAACAA--------------------------------
--------CGAATTATCACATCATGCATATCACCCAAAAAGTCCAATGCCAAAAAGGATCAACACATGCCGCAAAAAAAA
AACATCCCAATTACAAAAGCTTCAAATATGCACATCATCAGCATTTTTTTTAATTCACGAAC-TTTTTGTCAAATCCGTA
AATAATTTTTTTTTTCAATCCGTCATTTCTTTTTAAATCTGCGAACAATGTTT-AGTCCTGAACATTTTTTAGTTC----
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>chr3B_833
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-------------------------------------------------ACAAAAAAAA-AAAAAACAGGCGTTAGTTT-
CTGTCGCTAGCTCTGACTGTGCTCGCTGGGCCAGGCCCATGTCACGCATGGGACGCGAGCGCACCATCTCCCTTTTCGT-
----------------------------------TCGTCTTGTGCTGGCCCAAACT-AGCCTTCCACAGCCCAATATAAG
CCTCTCCGTTCCAAGGTGTC-CACTCCTCTCGGTCCCAAAACCCTAGCAGCCTC--------------------------
------TCCCACCCCGCGCCATCCCACCCCCGCCGCAGCCGCAGCAGCAGCCGTAGCCCGATGGAAGTCGACAGAGCCCC
GACCGCTGCCGCGGCAGGAGGATCCTCCTCTGGCGCGATGGCGGTGGACGCGGCCGGCGGCGTGGAGAAGCCGCGGTTCG
ACGCCCTGATGCCAAGCGAGATGAGCGGCGGGAGGCCACAGTACCGCAAGGTCCAGGTGCCGCCGCACCGCTTTGCGCCG
CTGAAGAAGGCGTGGCTGGAGATCTACACCCCCGTCTACGAGCACATGAAGGTCGACATCCGCATGAACCTCAAGGTTGG
TAACCCGGCTGCGTTTTCTAATGTCCCGTTGCTGCTTCTCTGAATAGTAAGAGCAAGTCCGAATTCGTGTGACCTGT---
-GTTCCCTTCCTCTCATTTAAAACGCGTCATCCGGTCAGTAATTGCGGAGAAAATTATTGGTCTGCTGTTGATCATCGTT
TCTTGTACTGTTTGGTTCAAGCACTTGTGTATTATGGAGAAAATCCGCACTAGCTTGTAGCACCTGTGGTTAA-------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGG
GGGACAACTTGTAAGATATCTCTGAATGTTTAGCATTTAGCTGTCTCCTTTGTAGCAATTTCATTAGTCTGTTTTTTTTC
ATCAACAGGCAAAAAGGGTTGAGCTGAAAACAAGGCATGATACACCAGATGTGAGCAACCTTCAGAAGTGTGCGGACTTC
GTGCATGCTTTTATGCTTGGATTTGACATTGCCGATGCCGTTGCCTTGCTTCGTCTTGATGACCTGTATGTGGACTCCTT
CGAGATCAAGGATGTGAAGACACTTCGAGGGGAGCATCTGTCGCGTGCCATTGGCCGCCTATCAGGGAAAGGAGGCAAGA
CCAAGTATGCCATTGAGAACTCTACCAGGACTCGCATAGTTATCGCTGATACGAAGATCCACATACTTGGATCCTTTGTT
AACATCAAGGTTGCCAGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCCGGAAAGGTCTATTCGAAGCTAAGGGC
TGTATCTGCTAGGATGGCAGAAAGGTATTAGTTGAGTCTGGGTCACATTATATAGCTGCAGTTTTGGCCTTGTAAGGTGT
TGTATCCGCTGATTTGTGTCCCTGTGCTATGCATTGTCTTGATATGAAGAACAACTTGGAAGTGCCGAGAGATCTGTGGT
GATATTCCTTGTGTTCTGTTCTCGGCTTTTTCTTGGGAAAATGCTGTTCTGATACATGTTA---TATGTTTGCTTCGACT
ACTATTTATATATGCCAAACACTATTGTGTAAGTTGTGTGGTCTCTTTTTCTTCGA-GTGTGTATTTTATACTCTATA--
GCATGGCTATGGATGTGGAGAATGATCAAGTTAACCTAGAATCTTGAATTGTCAGATTTGGTTGA-TTTACCCTTAGAAA
TGGACCACAACAATGGTTGTGAATCCTACAGAAAGTTTTGCATTTCTCTTGAGCAGTATGGCGAGCCCTTCGCACAGGAG
GCTCACCCAAAACATATAGCATTGGTACAGTACTTTATTGCCATGTAAATTCATCTTAGCTTGGCTATGTTTGTTTAGAT
GCCATTGTTTTTCTCTTTGGTGCTTTGTTCTTTTAATCTTGGATTACCATCCTGTGCATGCACTGCGGTGCTTCTGCAGA
GTTTGAGCTGGATAACAGTG------------------------------------------------------------
--------------------------------------------------------------------------------
------CTCAATCTCCTGCCTCCAATGGTCCTTTACACTACAGTGACACCTATAACCAATCTGTCTCTCTTACGTCGTCA
CAGTCAGTAAGAG------TTAGGATCAGACTTTGGAGAAGGTAAACATGTAG---------------------------
--------------------------------------------------------------------------------
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----------------
>SNPs
-------------------S------------------------------------------------------------
-----------------------------SSSSS----------------------------------------------
-----------S---S-------------------------------------------------------------S-S
SSSSSSSS-------S----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------SSSS---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
---------S-----S------------------------------------------------------------S---
---------------------------------------------------------------S-----------S----
----SS------S--------------------------S---SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-------------------------------------------S-----S-SS-------------------
--------------S-----------------------------S-----------S-----S-----------------
-------------S---------------------------------------------------------SSS-SSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------------S
---------------------------------------------S-------S-SS-SS-S------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
-----------------------S----------------------S---------------------------------
-S------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-S---------S--------S-S-S------------------------S---------------------------SSS
S----------------------------------------------------S----------------------S---
----------------------------S--------S------------------SS--------------S-----SS
---------S----SS----S---S------------S-------------------------------S---S------
---------------------------------------------------------------S---------S------
------S-------------------S------------S----------------------------------------
-----------------------S------------------------------------------------S-------
----------------------------------------SS-------------S-S----------------------
S----S----S---------------------------------------------------------------------
S---------------------S------------------------------------------S--------------
--------------------------------------S-----------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
S-----------------------------------------S-----------------S-------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------S----SSS----------------
-----------------------S--------S---------------------SSS-----------------------
------------------------------------------------------S-------------------------
-S-----------------------------------S------S--------------------------S--------
--------------------------S-----------------------S---------------------S---S--S
-----------------------------SS--S-----------------------S------S---------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-------------------------------------------------------S---S-S----S-------
---------SS--SSSSSS-------------------------------------------------------------
----S--------S-----S------S---------------SS---------------------------S--S----S
---------------------S---------S---S-----------------S--------------------------
------------------S-------S-----------------------------------S-----------------
-------S-------------S---------------S------------------S-----S-----------------
----------------
>forward_849
--------------------------------------------------------------------------------
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-----------------------------CTCCAGACATTTGCGGCAAC-------------------------------
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>reverse_1810
--------------------------------------------------------------------------------
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-------------------------------------------------GGGAAGTCGTGTGACCTGTG-----------
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>forward_1781
--------------------------------------------------------------------------------
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TGACCCGGCTCAGTTTTCTAG-----------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3783
--------------------------------------------------------------------------------
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----------------------ACTGCAACTCCACCAACTCC--------------------------------------
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----------------
