>input_sequence_41276
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-------------------------------------------------------------------------ATGGAGG
ACGTAGCCGGGATGATTTTCTCTGGCCCCGAGTTCAAGAAGATGGACGAGAACATGCGAATGCTGACGGTGGACGTCTTC
AAGGCCATCCCCAGGCCGACCGTCTCCACGGCCGCGCCCCTCGCCAGCGCC------GCCGCCGCGGC---CGCGCGGGA
CGGCGTCGACCGCATCAGCCGCCTCCCCGTCGGGATCCTCCGCAACATCGTCTCCCGCCTCCCCGCCAAGGACGCCGCGC
GCACCACCGCGCTGGCCAAGCGCTGGCGCCGCGTCTGGCACTCGGTGCCGCTCGTCCTCGTCGACGCGCACCTCCTCTCC
GACCGCAGCGTCGTGGGGCGCGGCCGCGGGTCCACCCAGTTCCGCGAGATGGGCCTCGAGTCCTGGTACGCCGGCCTGTT
TCGCATCCTGGACGCCATGGGCTCCCTCGCAGACAACGTGTCCCACGTCCTCGCCGCGCACCCGGGCCCCTTCGCCTTCG
TCTACCTCGCCGGCAACAACATGTTGTATCACCCGGACAAGTTGGAGCTCTGGCTCAAACTCCTCGCCGCCAAGGGCGTC
AAAGAACTCGTCTTTGTGAACCTCGCATCCAAGTTCGACGACGAGCTGCCCATACCCGCCG---AGCTCTTCAAGTGCAC
CGCCCTCACCAAGCTCTACATCGGCACCTGGTGCTTCCCGGACACAAGCACATCCGACCTCCCGCCTACTGCTGCGTTCC
CCTACCTCCGGGAGCTTGGCCTCTGCAACCTCGTCATCAAGGACGAGGACCTCGCCTTCGTGCTGGACAGATGCCCCGTC
CTGGAGAAGCTCATGATCGCCAGAGGTCGGTGGCCAGTGTGCCTCCGCATCCACAGCCGCAGTCTACGAAGCGTTCAGGT
GTGCATGGCTATCGTGCCAGAAATCAATGTGGTGCGCGCTACACGCCTGGAGAGGCTCTTTCTGTGGGAAGCTTGGGGTT
GGGGCGACCGTGATCTCACCAACATGTCCTCCAAAGTCAAGATCGGCCATGCACCCAAGCTGCGCTTCCTGGGATTCTTG
GTGCCTGGAATGCACCAACTTGAGATTGGCAACACAGCCATCATGGTCCGTGCTTTAATTTCTTAATA---------AC-
-------------------------------TATGAATCTTCTTTCATTCCGAATCACCATGTTTTAATAG-TAATTTCT
AAGTTCCATCCTTTAATTTGTAGTA----TATATAGCAGTATTACCACAAAATGCATCA-T----AATTAATTTGCAGGT
TAACACCAAGGCAAGTCCAAACACCACTGTCCCAAGCGTTCAGATGCTGGGAGTTCAAGTGAAACTTGGAACCCACTTTG
AAGCCAGGATGCTGCCTAGTTTCCTCAGATGCTTTCCTAACATCGAGACGCTCTATGTCCAGGTATAATTTGACCTGAGT
GA----CTACTCATGTTTGTGTCTGCCTGCACCAAATGA-----GACTGCTACTCATGACGTGCCATCTAT--GTCCTCT
ATTTGATTTATTAATTTGCAGTCCGAGAATGATGACTTCAAGTTCTGGGGACCTAAAACTGGTGGCACAAGCAAAGCCAT
CAACCTCAAGTTCTGGAAGGATGCTGGTCCTATTGAATGCATCCAGAGGCACATCAAGAAGTTGGTTCTCCGTGAGTTCC
GGGGGAGGAAAAGCGAGCTTGACTTCCTCAAGTACATTGCCGAGCATGCGCAAGTTCTGGAGGAGATGGTGATTGTGATG
ACCCATGGGCATTTGCCGTCAGATAATTTGGGTGCCAAGCTGAGGATCTTCATGGCTTCTGCAAAATGGGCTAATGGATG
CTGCAAGATGATGGTCTTCAAGAGTCCATTTGAGCAAGAAGGTACAGCGTGGTGCTACCTAAGAGGATTTGATTTTTCTA
TTGAGGATCCTTTTGATGTCTCAAAATGCCGCGAAGACAAATGTGCTGCCCATTAG------------------------
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>chr3D_1_TraesCS3D01G071900
TTAACTCTTCGCATGTTGGCCCTCATCTGGAAATAACGAGTATTTTTGTCACCAGCCCGCAGCCATTCTACCGAGCTCTC
TGCTTCCACATGAGCTCCTCACGCTTGTATAGCTCCAGCAGCTCATCTTTGATTTTAATTTCTCTTACCGGGGGGGCAAC
TCTCCCAGGAACAGCACGTAAAATTTCCAACTCTTTCTTTAGTCTTTTATTAATATTCATCCCAAGCGGCCAACAATCCC
GATAAAGATTTTAACTGCTCTGCTACTTCCGTTGCTGCACCTGTCGGGACTGATTCCCACGCCTCTTGTACAGTTGTCCG
AAGGGAAGGGTCAGATTCCCACATCACCTCATATTTAAGGTAAGGGATAATTGGTTTTACGCCCCTAGTTTGGTCACACT
CGACTGGTTTATCCCTAATTTCCAAAAACACGCGTTCATGCCCAAACCGCTTTGCTCATCTTATGCTTTTGCCCTTTGAC
CGTTTGATTGTCACTTTAAAAACTTCATAAAAATTCATACTAACTCAGAAAAATACAAATAAGATATCAAAATGTTTCGA
GAAACATCACCTACATGTGCATGTCATTTGCATCCAT----GATAAAAGTATTGGAAAGTCCCAATCTCAGGTTTAAGCT
AAAACATCCATGATAT-AAAAAAATGATCTCGAACCCACAGCTTCATTTTCATTAAACTTGGTAACAGATGGAGTACGTG
CTTCCCTCATTTGACAAACTAAAGAGGCATTGAG-----CTTGCCTTCAATTTCAAATTAAAT----GCACCAAGTAGGA
GCGTGTGATGGGCCCTGGAACAACAATACAGCTTGGGACATTTGGCCCAGCTACACAAGCCAGCCCACAAGGAAGGAACC
AAA-----ACCCTAGCTCAATCATTCACAAAGACCAAAGCAGCCGCCT-----CGCCTCCACTCCACTTTCCCCATTCCC
ACCAGCTCCACCG---CCGCGCCCTCAAT------TCCGCCTCCGCCTCCGGCGTCCGTCCTTTGGCCTCACCATGGAGG
ACGTAGCCGGGATGATTTTCTCTGGCCCCGAGTTCAAGAAGATGGACGAGAACATGCGAATGCTGACGGTGGACGTCTTC
AAGGCCATCCCCAGGCCGACCGTCTCCACGGCCGCGCCCCTCGCCAGCGCC------GCCGCCGCGGC---CGCGCGGGA
CGGCGTCGACCGCATCAGCCGCCTCCCCGTCGGGATCCTCCGCAACATCGTCTCCCGCCTCCCCGCCAAGGACGCCGCGC
GCACCACCGCGCTGGCCAAGCGCTGGCGCCGCGTCTGGCACTCGGTGCCGCTCGTCCTCGTCGACGCGCACCTCCTCTCC
GACCGCAGCGTCGTGGGGCGCGGCCGCGGGTCCACCCAGTTCCGCGAGATGGGCCTCGAGTCCTGGTACGCCGGCCTGTT
TCGCATCCTGGACGCCATGGGCTCCCTCGCAGACAACGTGTCCCACGTCCTCGCCGCGCACCCGGGCCCCTTCGCCTTCG
TCTACCTCGCCGGCAACAACATGTTGTATCACCCGGACAAGTTGGAGCTCTGGCTCAAACTCCTCGCCGCCAAGGGCGTC
AAAGAACTCGTCTTTGTGAACCTCGCATCCAAGTTCGACGACGAGCTGCCCATACCCGCCG---AGCTCTTCAAGTGCAC
CGCCCTCACCAAGCTCTACATCGGCACCTGGTGCTTCCCGGACACAAGCACATCCGACCTCCCGCCTACTGCTGCGTTCC
CCTACCTCCGGGAGCTTGGCCTCTGCAACCTCGTCATCAAGGACGAGGACCTCGCCTTCGTGCTGGACAGATGCCCCGTC
CTGGAGAAGCTCATGATCGCCAGAGGTCGGTGGCCAGTGTGCCTCCGCATCCACAGCCGCAGTCTACGAAGCGTTCAGGT
GTGCATGGCTATCGTGCCAGAAATCAATGTGGTGCGCGCTACACGCCTGGAGAGGCTCTTTCTGTGGGAAGCTTGGGGTT
GGGGCGACCGTGATCTCACCAACATGTCCTCCAAAGTCAAGATCGGCCATGCACCCAAGCTGCGCTTCCTGGGATTCTTG
GTGCCTGGAATGCACCAACTTGAGATTGGCAACACAGCCATCATGGTCCGTGCTTTAATTTCTTAATA---------AC-
-------------------------------TATGAATCTTCTTTCATTCCGAATCACCATGTTTTAATAG-TAATTTCT
AAGTTCCATCCTTTAATTTGTAGTA----TATATAGCAGTATTACCACAAAATGCATCA-T----AATTAATTTGCAGGT
TAACACCAAGGCAAGTCCAAACACCACTGTCCCAAGCGTTCAGATGCTGGGAGTTCAAGTGAAACTTGGAACCCACTTTG
AAGCCAGGATGCTGCCTAGTTTCCTCAGATGCTTTCCTAACATCGAGACGCTCTATGTCCAGGTATAATTTGACCTGAGT
GA----CTACTCATGTTTGTGTCTGCCTGCACCAAATGA-----GACTGCTACTCATGACGTGCCATCTAT--GTCCTCT
ATTTGATTTATTAATTTGCAGTCCGAGAATGATGACTTCAAGTTCTGGGGACCTAAAACTGGTGGCACAAGCAAAGCCAT
CAACCTCAAGTTCTGGAAGGATGCTGGTCCTATTGAATGCATCCAGAGGCACATCAAGAAGTTGGTTCTCCGTGAGTTCC
GGGGGAGGAAAAGCGAGCTTGACTTCCTCAAGTACATTGCCGAGCATGCGCAAGTTCTGGAGGAGATGGTGATTGTGATG
ACCCATGGGCATTTGCCGTCAGATAATTTGGGTGCCAAGCTGAGGATCTTCATGGCTTCTGCAAAATGGGCTAATGGATG
CTGCAAGATGATGGTCTTCAAGAGTCCATTTGAGCAAGAAGGTACAGCGTGGTGCTACCTAAGAGGATTTGATTTTTCTA
TTGAGGATCCTTTTGATGTCTCAAAATGCCGCGAAGACAAATGTGCTGCCCATTAGTTTTCTGT----TTAAGCATCTAT
AACGTACTGCCTTAGACTGTTGGTAATGTGTTTTCTCTGGTCTGGGATTTGGGAAGGATCCTACTTGCTTGGCTTCAGTG
ACTATTAAGTGCCCAAGTTATTTAGCACTATCATTTCTCTTGCAGAAGACTATTGTTAGTTAAA----TAGAAATGCTGT
TTCCAGGATTCAGTTTACATTGCAGGAGTTTGTCTAAATGTATGGCTGAATATTGATGGGAAAGTTTTATCCATCGCTTA
CTATCTAAGAATGTTCCTCAAGAATTGCTCCTTTTGGCATCGTGCTTCAATTTTTGCAAATTCTCTATGGTGCTTGGTTG
CTTATTTACATATTTACACCAAATTACCTCCGTAGCTATTTACGGTGTTTCTAATTTTTGTTCTGCCTATCCATTTTACC
ATGCACTTATGGAATATGGGGCTAAATTTACTATTGATTGTTGCTTCAACTGGGTCTGGGTGACACTTATTTATACATAA
TTACATTTATGATAGGGACATAAGTCTAGGCTTCATTTTACCTTAAACAAATATATATCTTGGTCAGTCTGGTTCTACCA
TGTGCTCTGGCATTTTGTTTTGAAATGATGGACCATA-TTTTTTTTAGGCGCCGTTAAGTCCAATTTATCACTATGCCAC
ATGCACTGCACTGTCTGAAGATGAAATAGGTATCTTGCACAAAGGTAAGTAACAGCTTAAGCAACTCAGAGGGAAACAAA
TGCTAAAAT-AAAATAGTTCTTTTGGTGATTTCAAATGCTAGGTTTGAATTCTTGGTGCCATGCTTTCCTTTAAATTGTG
AATTAAGGTCCTTTCTACCCAGAAGAATGGACTTTAGGTGTGCCATTATCAGTTTATTACTCCCTCCGTTTGGAATTACT
TGACTTCATTTGTATACAAATTTGTACTAGCTTAGCTCTCTCTCCAAGTCATCTAATTCCGAACGGAGGGAGTATAACAG
AAAATCCTATGTGCAGGGAATTTGGG
>chr4D_1
TTAACTCTTCGCATGTTGGCCCTCATCTGGAAATAACGAGTATTTTTGTCACCAGCCCGCAGCCATTCTACCGAGCTCTC
TGCTTCCACATGAGCTCCTCACGCTTGTATAGCTCCAGCAGCTCATCTTTGATTTTAATTTCTCTTGCCGAGGGGGCAAC
TCTCCCAGGAACAGCACGTAAAATTTCCAACTCTTTCTTTAGTCTTTTATTAATATTCATCCCAAGCGGCCAACAATCCC
GATAAAGATTTTAC------------------------------------------------------------------
---------------------------------------------------TGGTTTTATGCCCCTAGTTTGGTCACACT
CGACTGGTTTACCCCTAATTTCCAAAAACACGCGTTCATGCCCAAACTGCTTTGCTCATCTTATGCTTTTGCCCTTTGAC
CGTTTGATTATCACTTTGAAAATTTCATAAAAATTCATACTAACTCAGAAAAATACAAATAAGATATCAAAATGTTTCGA
GAAACATCATCTACATGTGCATGTCATTTGCATCCAT----GATAAAAGTATTGGAAAGTCCCAATCTCAGGTTTAAGCT
AAAACATCCATGATATAAAAAAAATGATCTCGAACCCACAGCTTCATTTTCATTAAACTCGGTAACAGATGGAGTACGTG
CTTCCCTCATTTGACAAACTAAAGAGGCATTGAG-----CTTGCCTTCAATTTCAAATTAAAT----GCACCAAGTAGGA
GCGTGTGATGGGCCCTGGAACAACAATACAGCTTGGGACATTTGGCCCAGCTACACAAGCCAGCCGACAAGGAAGGAACC
AAA-----ACCCTAGCTCAATCATTCACAAAGACCAAAGCAGCCGCCT-----CGCCTCCACTCCACTTTCCCCATTCCC
ACCAGCTCCACCG---CCGCGCCCTCAAT------TCCGCCTCCGCCTCCGGCGTCCGTCCTTTGGCCTCACCATGGAGG
ACGTAGCCGGGATGATTTTCTCTGGCCCCGAGTTCAAGAAGATGGACGAGAACATGCGAATGCTGACGGTGGACGTCTTC
AAGGCCATCCCCAGGCCGACCGTCTCCACGGCCGCGCCCCTCGCCAGCGCC------GCCGCC---GCGGCCGCGTGGGA
CGGCGTCGACCGCATCAGCCGCCTCCCCGTCGGGATCCTCCGCAACATCGTCTCCCGCCTCCCCGCCAAGGACGCCGCGC
GCACCACCGCGCTGGCCAAGCGCTGGCGCCGCGTCTGGCACTCGGTGCCGCTCGTCCTCGTCGACGCGCACCTCCTCTCC
TACCGCAGCGTCGTGGGGCGCGGCCGCGGGTCCACCCAGTTCCGCGAGATGGGCCTCGAGTCCTGGTACGCCGGCCTGTT
TCGCATCCTGGACGCCATGGGCACCCTCGCAGACAACGTGTCCCACGTCCTCGCCGTGCACCCGGGCCCCTTCGCCTTCG
TCTACCTCGCCGGCAACAACATGTTGTATCACCCGGACAAGTTGGAGCTCTGGCTCAAACTCCTCGCCGCCAAGGGCGTC
AAAGAACTCGTCTTTGTGAACCTCGCATCCAAGTTCGACGACGAGCTGCCCATACCCGCCG---AGCTCTTCAAGTGCAC
CGCCCTCACCAAGCTCTACATCGGCACCTGGTGCTTCCCGGACACAAGCACATCCGACCTCCCGCCTACTGCTGCGCTCC
CCTACCTCCGGGAGCTTGGCCTCTGCAACCTCGTCATCAAGGACGAGGACCTCGCCTTCGTGCTGGACAGATGCCCCGTC
CTGGAGAAGCTCATGATCGCCAGAGGCCGGTGGCCAGTGTGCCTCCGCATCCACAGCCGCAGTCTACGAAGCGTTCAGGT
GTGCATGGCTATCGTGCCAGAAATCAATGTGGTGCGCGCTACACGCCTGGAGAGGCTCTTTCTGTGGGAAGCTTGGGGTT
GGGGCGACCGTGATCTCACCAACATGTCCTCCAAAGTCAAGATCGGCCATGCACCCAAGCTGCGCTTCCTGGGATTCTTG
GTGCCTGGAATGCACCAACTTGAGATTGGCAACACAGCCATCATGGTCCGTGCTTTAATTTCTTAATA---------AC-
-------------------------------TATGAATCTTCTTTCATTCCGAATCACCATGTTTTAATAG-TAATTTCT
AAGTTCCATCCTTTAATTTGTAGTA----TATATAGCAGTATTACCCCAAAATGCATCA-T----AATTAATTTGCAGGT
TAACACCAAGGCAAGTCCAAACACCACTGTCCCAAGCGTTCAGATGCTGGGAGTTCAAGTGAAACTTGGAACCCACTTTG
AAGCCAGGATGCTGCCTAGTTTCCTCAGATGCTTTCCTAACATCGAGACGCTCTATGTCCAGGTATAATTTGACCTGAGT
GA----CTACTCATGTTTGTGTCTGCCTGCACCAAATGA-----GACTGCTACTCATGACGTGCCATCTAT--GTCCTCT
ATTTGATTTATTAATTTGCAGTCCGAGAATGATGACTTCAAGTTCTGGGGACCTAAAACTGGTGGCACAAGCAAAGCCAT
CAACCTCAAGTTCTGGAAGGATGCTGGTCCTATTGAATGCATCCAGAGGCACATCAAGAAGTTGGTTCTTCGTGAGTTCC
GGGGGAGGAAAAGCGAGCTTGTCTTCCTCAAGTACATTGCCGAGCATGCGCAAGTTCTGGAGGAGATGGTGATTGTGATG
ACCCATGGGCATTTGCCGTCAGATAATTTGGGTGCCAAGCTGAGGATCTTCATGGCTTCTGCAAAATGGGCTAATGGATG
CTGCAAGATGATGGTCTTCAAGAGTCCATTTGAGCAAGAAGGTACAGCGTGGTGCTACCTAAGAGGATTTGATTTTTCTA
TTGAGGATCCTTTTGATGTCTCAAAATGCCGCGAAGACAAATGTGCTGCCCATTAGTTTTCTGT----TTAAGCATCTAT
AACGTACTGCCTTAGACTGTTGGTAATGTGTTTTCTCTGGTCTGGGATTTGGGAAGGATCCTACTTGCTTGGCTTCAGTG
ACTATTAAGTGCCCAAGTTATTTAGCACTATCATTTCTCTTGCAGAAGACTATTGTTAGTTAAA----TAGAAATGCTGT
TTCCAGGATTCAGTTTACATTGCAGGAGTTTGTCTAAATGTATGGCTGAATATTGATGGGAAAGTTTTATCCATCGCTTA
CTATCTAAGAATGTTCCTCAAGAATTGCTCCTTTTGGCATCGTGCTTCAATTTTTGCAAATTCTCTATGGTGCTTGGTTG
CTTATTTACATATTTACACCAAATTACCTCCGTAGCTATTTACGGTGTTTCTAATTTTTGTTCTGCCTATCCATTTTACC
ATGCAATTATGGAATATGGGGCTAAATTTACTATTGATTGTTGCTTCAACTGGGTCTGGGTGACACTTATTTATACATAA
TTACATTTATGATAGGGACATAAGTCTAGGCTTCATTTTACCTTAAACAAATATATATCTTGGTCAGTCTGGTTCTACCA
TGTGCTCTGGCATTTTGTTTTGAAATGATGGACCATA-TTTTTTTTAGGCACCGTTAAGTCCAATTTATCACTATGCCAC
ATGCACTGCACTGTCTGAAGATGAAATAGGTATCTTGCACAAAGGTAAGTAACAGCTTAAGCAACTCAGAGGGAAACAAA
TGCTAAAAT-AAAATAGTTCTTTTGGTGATTTCAAATGCTAGGTTTGAATTCTTGGTGCCATGCTTTCCTTTAAACTGTG
AATTAAGGTCCTTTCTACCCAGAAGAATGGACTTTAGGTGTGCCATTATCAGTTTATTACTCCCTCCGTTTGGAATTACT
TGACTTCATTTGTATACAAATTTGTACTAGCTTAGCTCTCTCTCCAAGTCATCTAATTCCGAACGGAGGGAGTATAACAG
AAAATCCTATGTGCAGGGAATTTGGG
>chr3B_1
TTAACTCTTCGCATGTTGGCCCTCATCTGGAAATAACGAGTACTTTTGTCACCAGCCCGCAGCCATTCTACTGAGCTCTC
TGCTTCCACATGAGCTCCTCATGCTTGTATAGCTCCAGCAGCTCATTTTTAATTTTAATTTCTCTTACCGAGGGGGCAAC
TCTCCCAGGAACAACACGTAAAATTTCCAACTCTTTCTTTAATCTTTTATTAATATTCATCCTTTTTAT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TAATTTCCAAAAACACGCGTTCATGCCCAAACCGCTTTGCTCATCTTATGCTTTTGCCCTTTGAC
CGTTTGATTGTCATTTTGAAAACTTCATAAAAATTCATACTAACTCAGAAAAATACAAATAAGATATCAAAATGTTGCGA
GAAACATCACCTACATGTGCATGTCATTTGCATCCATCCATGATAAAAGTATTGGAAAGTCCCAATCTCCGGTTTAAGCT
AAAACATCC---------------------------CACAGCTTCATTTTCATCAAAC----------------------
--TCCCTCATTTGACAAACTAAAGAGGCATTGAG-----CTTGCCTTCAATTTCAAATTAAATGCACCAAGTAAGTAGGA
GCGTGTGATGGGCCCTGGAACAACAATACAGCTTGGGACATTTGGC-------------CCAGCCGACAAGGAAGGAACC
AAACCAAAACCCTAGCTCAATCATTCACAAAGACCAAAGCAGCCGCCTCGCCTCGCCTCCACTCCACTTTCCCCATTCCC
ACCAGCTCCACCGCCGCGC--------------CCTCCGCCTCCGCCTTCGGCGTCCGTCCTTTGGCCTCACCATGGAGG
ACGTAGCCGGGATGATTTTCTCTGGCCCCGAGTTCAAGAAGATGGACGAGAACATGCGAATGCTGACGGTGGACGTCTTC
AAGGCCATCCCCAGGCCGACCGTCTCCACGGCCGCGCCCCTCGCCAGCGCC------GCCGCC---GC---CGCGCGGGA
CGGCGTCGACCGCATCAGCCGCCTCCCCGTCGGGATCCTCCGCAACATCGTCTCCCGCCTCCCCGCCAAGGACGCCGGGC
GCACCACCGCGCTGGCCAAGCGCTGGCGCCGCGTCTGGCACTCGGTGCCGCTCGTCCTCGTCGACGCGCACCTCCTCTCC
GACCGCAGCGTCGTGGGGCGCGG------------CCAGTTCCGCGAGATGGGCCTCGAGTCCTGGTACGCCGGCCTGTT
TCGCATCCTGGACGCCATGGGCACCCTCGCAGACAACGTGTCCCACGTCCTCGCCGCGCACCCGGGCCCCTTCGCCTTCG
TCTACCTCGCCGGCAACAACATGTTGTATCACCTGGACAAGTTGGAGCTCTGGCTCAAACTCCTCGCCGCCAAGGGCGTC
AAAGAACTCGTCTTTGTGAACCTCGCATCCAAGTTCGACGACCAGCTGCCCATACCCGCCGCCGAGCTCTTCAACTGCAC
CGCCCTCACCAAGCTCTACATCGGCACCTGGTGCTTCCCGGACACAAGCACATCCGACCTCCCGCCTACTGCTGCCTTCC
CCTACCTCCGGGAGCTTGGCCTCTGCAACCTCCTCATCAAGGACAAGGACCTCGCCTTCGTGCTGGACAGATGCCCCGTC
CTGGAGAAGCTCATGATCGCCAGAAGCCGGTGGCCAGTGTGCCTCCGCATCCACAGCCGCAGTCTACGAAGCGTTCAGGT
GTGCATGGCTATCGTGCCAGAAATCAATGTGGTGCGCGCTACACGCCTGGAGAGGCTCTTTCTGTGGGAAGCTTGGGGTT
GGGGCGACCGTGATCTCACCAACATGTCCTCCAAAGTCAAGATCGGCCATGCACCCAAGCTGCGCTTCCTGGGATTCTTG
GTGCCTGGAATGCACCAACTTGAGATTCGCAACACAGCCATCATGGTCCGTGTGCTTTAGATACATCCCCTTTTATCTAT
TTTGATGACAAGTATTTTCGGACGGAGGGAGTATGAATCTTCTTTCATTCCGAATCACCATGTTTTAATAC-TAATTTCT
AAGTTCCATCCTTTAATTTGTAGTAAGTATATATAGCAGTATTACCACAAAATGCATCATAATTAAATTAATTTGCAGGT
TAACACCAAGGCAAGTCCAAACACCACTGTCCCAAGCGTTCAGATGCTGGGAGTTCAAGTGAAACTTGGAACCCACTTTG
AAGCCAGGATGCTGCCTAGTTTCCTCAGATGCTTTCCTAACATCGAGACGCTCTATGTCCAGGTATAATTTGACCTGAGT
CACTAGCTACTCATGTTTGTGTCTGCCTGCACCAAATGAATTGAGACTGCTACTCATGACGTGCCATCTATATGTCCTCT
GTTTGATTTATTAATTTGCAGTCCGAGAATGATGACTTCAAGTTCTGGGGACCTAAAACTGGTGGCACAAGCAAAGCCAT
CAACCTCAAGTTCTGGAAGGATGCTGGTCCTATTGAATGCATCCAGAGGCACATCAAGAAGTTGGTTCTCCGTGAGTTCC
GGGGGAGGAAAAGCGAGCTTGACTTCCTCAAGTACATTGCCGAGCATGCGCAAGTTCTGGAGGAGATGGTGATTGTGATG
ACCCATGGGCATTTGCCGTCAGATAATTTGGGTGCCAAGCTGAGGATCTTCATGGCTTCTGCAAAATGGGCTAATGGATG
CTGCAAGATGATGGTCTTCAAGAGTCCATTTGAGCAAGAAGGTACAGCGTGGTGCTACCTAAGAGGATTTGATTTTTCTA
TTGAGGATCCTTTTGATGTCTCAAAATGCCGCGAAGACAAATGTGCTGCCCATTAGTTTTCTGTGTTGTTAAGCATCTAT
AACGTACTGCCTTAGACTGTTGGTAATGTGTTTTCTCTGGTCTGGGATTTGGGAAGGATCCTACTTGCTTGGCTTCAGTG
ACTATTAAGTGCCCAAGTTATTTAGCACTATCATTTCTCTTGCAGAAGACTATTGTTAGTTAAA----TAGAAATGCTGT
TTCCAGGATTCAGTTTACATTGCAGGAGTTTGTCTAAATGTATGGCTGAATATTGATGGGAAAGTTTTATCCATCGCTTA
CTATCTAAGAATGTTCCTCAAGAATTGCTCCTTTTGGCATCGTGCTTCAATTTTTGCAAATTCTCTATGGTGCTTGGTTG
CTTATTTACATATTTACACCAAATTACCTCCGTAGCTATTTACGGTGTTTCTAATTTTTGTTCTGCCTATCCATTTTACC
ATGCACTTATGGAATATGGGGCTAAATTTACTATTGATTGTTGCTTCAACTGGGTTTGGGTGACACTTATTTATACATAA
TTACATTTATGATAGGGACATAAGTCTAGGCTTCATTTTACCTTAAACAAATATATATCTTGGTCAGTCTGCTTCTACCA
TGTGCTCTGGCATTTTGTTTTGAAATGATGGACCATATTTTTTTTTAGGCACCGTTAAGTCCAATTTATCACTATGCCAC
GTGCACTGCACTGTCTGAAGATGAAATAGGTATCTTGCACAAAGGTAAGTAACAGCTTAAGCAACTCAGAGGGAAACAAA
TGCTAAAATAAAAATAGTTCTTTTGGTGATTTCAAATGCTAGGTTTGAATTCTTGGTGCCATGCTTTCCTTTAAACTGTG
AATTAAGGTCCTTTCTACCTAGAAGAATGGACTTTAGGTGTGCCATTATCAGTTTATTACTCCCTCCGTTTGGAATTACT
TGACT---------------------------------------------------------------------------
--------------------------
>chr3A_612
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAAGTCCCAATCTCAGGTTTAAGCT
AAAACATCCATGATACAAAAAAAATGATCTCGAACCCACAATTTCATTTTCATTAAACTCGGTAACAGATGGAGTAGGTG
CTTCCCTCATTTGACAAACTAAAGAGGCATTGAGTTGAGCTTGCCTTCAATTTCAAATTAAATGGAGGCACCAAGTAGGA
GCGTGTGATGGGCCCTGGAACAA--------------ACATTTGGCCCAGCTACACAAGCCAGCCGACAAGGAAGGAACC
AAA-----ACCCTAGCTCAATCATTCACAAAGACCAAAGCAGCCGCCT-----CGCCTCCACTCCACTTTCCCCATTCCC
ACCAGCTCCACCGCCGCCGCGCCCTCAATTCCGCCTCCGCCTCCGCCTCCGGCGTCCGTCCTTTGGCCTCACCATGGAGG
ACGTAGCCGGGATGATTTTCTCTGGCCCCGAGTTCAAGAAGATGGACGAGAACATGCGAATGCTGACGGTGGACGTCTTC
AAGGCCATCCCCAGGCCGACCGTCTCCACGGCCGCGCCCCTCGCCAGCGCCGCCGCCGCCGCC---GC---CGCGCGGGA
CGGCGTCGACCGCATCAGCCGCCTCCCCGTCGGGATCCTCCGCAACATCGTCTCCCGCCTCCCCGCCAAGGACGCCGCGC
GCACCACCGCGCTGGCCAAGCGCTGGCGCCGCGTCTGGCACTCGGTGCCGCTCGTCCTCGTCGACGCGCACCTCCTCTCC
GACCGCAGCGTCGTGGGGCGCGGCCGCGGCTCCACCCAGTTCCGCGAGATGGGCCTCGACTCCTGGTACGCCGGCCTGTT
TCGCATCCTGGACGCCATGGGCACCCTCGCAGACAACGTGTCCCACGTCCTCGCCGCGCACCCGGGCCCCTTCGCCTTCG
TCTACCTCGCCGGCAACAACATGTTGTATCACCCGGACAAGTTGGAGCTCTGGCTCAAACTCCTCGCCGCCAAGGGCGTC
AAAGAACTCGTCTTTGTGAACCTCGCATCCAAGTTCGACGACCAGCTGCCCATACCCGCCG---AGCTCTTCAACTGCAC
CGCCCTCACCAAGCTCTACATCGGCACCTGGTGCTTCCCGGACACAAGCACATCCCACCTCCCGCCTACTGCCGCGTTCC
CCTACCTCCGGGAGCTTGGCCTCTGCAACCTCCTCATCAAGGACGAGGACCTCGCCTTCCTGCTGGACAGATGCCCCGTC
CTGGAGAAGCTCATGATCGCCAGAGCCCGGTGGCCAGTGTGCCTCCGCATCCACAGCCGCAGTCTACGAAGCGTTCAGGT
GTGCATGGCTATCGTGCCAGAAATCAATGTGGTGCGCGCTACACGCCTGGAGAGGCTCTTTCTGTGGGAAGCTTGGGGTT
GGGGCGACCGTGATCTCACCAACATGTCCTCCAAAGTCAAGATCGGCCATGCACCCAAGCTGCGCTTCCTGGGATTCTTG
GTGCCTGGAATGCACCAACTTGAGATTGGCAACACAGCCATCATGGTCCGTGCTTTAATACTCTTCTTAATAACTATAC-
-------------------------------TATGAATCTTCTTTAATTCCGAATCACCATGCATGTTTTAATAATTTCT
AAGTTCCATCCTTTAATTTGTAGTA----TATATAGCAGTATTACCACAAAATGCATCATT----AATTAATTTGCAGGC
TAACACCAAGGCAAGTCCAAACACCACTGTCCCAAGCGTTCAGATGCTGGGAGTTCAAGTGAAACTTGGAACCCACTTTG
AAGCCAGGATGCTGCCTAGTTTCCTCAGATGCTTTCCTAACATCGAGACGCTCTATGTCCAGGTATAATTTGACCTGAGT
GA----CTACTCATGTTTGTGTCTGCCTGCACCAAATGA-----GACTGCTACTCATGACGTG------------CCTCT
ATTTGATTTATTAATTTGCAGTCCGAGAATGATGACTTCAAGTTCTGGGGACCTAAAACTGGTGGCACAAGCAAAGCCAT
CAACCTCAAGTTCTGGAAGGATGCTGGTCCTATTGAATGCATCCAGAGGCACATCAAGAAGTTGGTTCTCCGTGAGTTCC
GGGGGAGGAAAAGCGAGCTTGACTTCCTCAAGTACATTGCCGAGCATGCGCAAGTTCTGGAGGAGATGGTGATTGTGATG
ACCCATGGGCATTTGCCGTCAGATAATTTGGGTGCCAAGCTGAGGATCTTCATGGCTTCTGCAAAATGGGCTAATGGATG
CTGCAAGATGATGGTCTTCAAGAGTCCATTTGAGCAAGAAGGTACAGCGTGGTGCTACCTAAGAGGATTTGATTTTTCTA
TTGAGGATCCTTTCGATGTCTCAAAATGCCGCGAAGACAAATGTGCTGCCCATTAGTTTTCTGT----TTAAGCATCTAT
AACGTACTGCCTTAGACTGTTGGTAATGTGTTTTCTCTGGTCTGGGATTTGGGAAGGATCCTACTTGCTTGGCTTCAGTG
ACTATTAAGTGCCCAAGTTTTTTAGCACTATCATTTCTCTTGCAGAAGACTATTGTTAGTTAAATGAGTAGAAATGCTGT
TTCCAGGATTCAGTTTACATTGCAGGAGTTTGTCTAAATGTATGGCTGGATATTGATGGGAAAGTTTTATCCATCGCTTA
CTATCTAAGAATGTTCCTCAAGAATTGCTCCTTTTGGCATCGTGCTTCAGTTTTTGCAAATTCTCTATGGTGCTTGGTTG
CTTATTTACATATTTACACCAAATTACCTCCGTAGCTATTTACGGTGTTTCTAATTTTTGTTCTGCCTATCCATTTTACC
ATGCACTTATGGAATATGGGGCTAAATTTACTATTGATTGTTGCTTCAACTGGGTCTGGGTGACACTTATTTATAAATAA
TTACATTTATAATAGGGACATAAGTCTAGGCTTCATTTTACCTTAAACATATATATATCTTGGTCAGTCTGGTTCTACCA
TGTGCTCTGGCATTTTGTTTTGAAATGATGGACCATATTTTTTT--AGGCACCGTTAAGTCCAATTTATCACTATGCCAC
ATGCACTGCACTGTCTGAAGATGAAATAGGTATCTTGCACAAAGGTAAGTAACAGCTTAAGCAACTCAGAGGGAAACAAA
TGCTAAAAT-AAAATAGTTCTTTTGGTGATTTCAAATGCTAGGTTTGAATTCTTGGTGCCATGCTTTCATTTAAACTGTG
AATTAAGGTCCTTTCTACCTAGAAGAATGGACTTTAGGTGTGCCATTATCAGTTTATTACTCCCTCCGTTTGGAATTACT
TGACTTCATTTGTATACAAATTTGTACTAGCTTAGCTCTCTCTCCAAGTCATCTAATTCCGAACGGAGGGAGTATAACAG
AAAATCCTATGTGCAGGGAATTTGGG
>SNPs
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------------------
-----------S--------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------SSS--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>forward_315
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CCCACGCCTCTTGTACAGTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>reverse_1463
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TCCCTCGCAGACAACGTG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>forward_343
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GGAAGGGTCAGATTCCCACA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>reverse_3651
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCGTTAAGTCCAATTTATCACT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
