>input_sequence_41239
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--------------------------------------ATGGCCTCGCGGCCGCCGCATCCCCGCCGGATTCGGCCCATC
GCCGCGGCCTCCCTGGTGCTGTTCCTCCTCTTCCTCTACACCCGCCCGGATGGGAACCGTCCGCGGCTCCCGGGCTCCGA
TTCGCGCCCGCTCCGCCGCGGGCTCCTCTCCGGCGCCGATCCCGCCAGCCCCGCCGCGTCCAGAGGCGGGAACCTCTCGG
AGGTCACCGGCCTGAACGGCGAGCAGCTGGAGGACCCCTCCACCGCGTGCGCCGGCATCGCGCGCCACGAGGGTTTCGGG
TCCCAGTGCGAGTTCCTCCGGGCGCACCCGCAGTGCAGCTCCGGCGGGTTCGTCGACTACCTGGATTTCTTTTACTGTCG
GTGCGAGAGGTTCAGGCTGCTTGGCTATGCCGTCCTTGCCGTGTGCCTGGCGGCGCTGTTCTACATGCTCGGTAACACGG
CCGCGGACTACTTCTGCTGCAGCCTCGAGAAGATGTCCGCCCTGCTGCGGCTCCCGCCGACCGTGGCTGGTGTTACCTTG
CTCCCCTTTGGTAATGGTGCTCCTGATGTGTTTGCCAGTATTGCAGCGTTTATGGGGTCTGGCGCCGGGGATGTGGGGCT
GAACAGCGTGCTGGGCGGAGCGGTGTTTGTTACCTGCGTTGTTGTTGGGGCAGTGTCATTGTCCGTCGCGGAGAAGAATG
TGCAGATTGATTGGAGGTGCTTTGTGAGGGATGTTGGATTCTTCCTGATCACCTTGGTGGCACTGTCTATTATGTTGATT
GTCGGGAAGGTGACCGTTTGGGGAGCTATGCTGTTTGTATCGATTTATGTGGTTTATGCATTTGTGGTGGCCGCAAATGA
GTTATTAAGGAAGCACGCACGGATGCTGAAGTTTGATGTAGTCACACCATTGCTTCCTGTGAGGGGAAGTATCTTCTCAC
ACGGGCTAGAGGAGGATGATTCTGTGTACAGTTCACTTCTTGAGGAGGATACAAGTGATGAGGCGGCCCAGGTAAACACA
TCATTGCCGCAGTGGATGTGGGCTTCTCATGTGGCTATCTACTCAAATCAGGGGAGAGATGGTTCGCCTGACAGGCCTTT
GTGGGGTTGGAATGAAGAAGGCAGAGTGGATACGTCCACGCTTAACTACTCCAAAATGTTTCTGTTTTTGGAGCTACCCT
TGACAATACCAAGAAAGTTGACGATTCCAATAGTTGAGGAAGACCGCTGGTCACAAGAATATGCTGTTGCCAGTGCTGGC
TTGGCACCTCTACTCTTATCATTTCTGTGGAACAGCCAGGATGGAGTATCCACGGGTGCCAGGGTAGCAGCATATGTGAT
AGCTGGTATTTTTGGGATTGCACTTGCAGGTCTTGCTTTTACATTCACCAGTCCTGACCGCCCTCCAAGGAGATACTTAC
TCCCATGGGTGTTTGGAGGGTTTGTGATGAGCATCGTTTGGTTCTACATCATTGCCAATGAGCTGGTTGCACTGTTGGTT
GCATTTGGGGTGATACTTGGGATTAATCCTTCAATCCTTGGCTTAACGGTGCTAGCATGGGGCAATTCGATGGGTGACTT
GATGTCAAATGTGGCCTTGGCAATGAATGGAGGAGACGGTGTACAGATTGCTATGTCTGGCTGTTATGCAGGGCCTATGT
TCAACACACTTGCCGGCTTAGGAATATCAATGCTGCTTGGAGCTTGGTCGACAGCACCCAACTCTTACGTTCTTCCACAG
GACCGCTCTCTTATTTACACGATGAGCTTCCTGGTTGCTGGGTTGGTCTGGGCGCTTGTCACGCTGCCACGGAGCGGCAT
GCGGCCTAACAAGACGCTTGGGGTTGGCCTCATTGCTCTTTACTCAGTTTTCCTTTTCATTAGAGTAAGCAGTGCTATGG
GGATATTGCCACTCCCGGGCTTGAATTAG---------------------------------------------------
--------------------------------------------------------------------------------
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--------
>chr4A_1_TraesCS4A01G009000
CCTACATATAAAGATGTCCATGAAAATGTAAAAATAATCGCCTAAA--TTTTGAAAAATGTTTATTGCATGTAAAAGGAA
ATATTCGTATACCAAAATTGGCAGATTACAAAAGTTCATCAATTTGAAGAAGAAACAATGAAGG----AAAAGAAGGTAA
AAACCAGTAAATAAAAAGAGAGATAAGAAAAAGACCGAACTAAATCTTCCCAAAATTGGTGGAAGGTTTCCGAAGCGAGT
ACCATGTTTTGAGAACTGCTTGGGTACAAACGCTCTATTGAGATGGCCCACCGCGAGGAATGTCGTAGTCCAGAGCTCCA
TACATCGTGCATCCTATTCGCCCCTCATTGCGTCGCACTATCGACGCTTCACACAGAGTTGGCGAGAGAGTGATCTAACT
GGGTCGCCCCGTTAAGGTGTTCCACCAATCCCGATTTTGGGAACCTTCTA------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GGTGGTTTCTCACCCAGTCCAGGTGCC
TTGTTTCGTTTTCCCCCTATTTTTT-------------------------------------------------------
--------------AAATTGCCTTTTTTATTTTTAAAAAGTTTAATGTTAAAAAAGTTAGAAATTCAAAAATGTCTGGAA
TTTCCAAAAAAGTTAGTTTTTTTGATAAATCTCCAAAAGAGTTATTTTTTCTAAAAAATAGTATTTATAAAAAAAATACT
TTTTGTTTTGAGACAATCCAAAAAAGTTAGTTTTTTTTTGAGAAAGTTCAAAAAGTTAGTGTTTCTAAAAGCCGAGGCGG
CTCTGTCAGGAAACGGGTAGCCCAAGGAGATCGAGGCCTAATCCAATCCGGCCCACTTAACAAAGACCGTTCCGTTTGCT
TCTTGGCGCGGCACGCGACCGGGGCAACACGCCGTCTCCTTCCCCACATCGTCGTCAATCCCCAATTCCCAAACCACGCG
CTCCGACGACCAAACCCTAACCCCGGATCCCCCGGAAGCACGCCAAATTCCCCAACCCTCCCCTCAGATTCGGCATGCCA
GCCGCCCGAAACTCCAGCCCGTGACCTCGCCGTACACGATGGCCTCGCGGCCGCCGCATCCCCGCCGGATTCGGCCCATC
GCCGCGGCCTCCCTGGTGCTGTTCCTCCTCTTCCTCTACACCCGCCCGGATGGGAACCGTCCGCGGCTCCCGGGCTCCGA
TTCGCGCCCGCTCCGCCGCGGGCTCCTCTCCGGCGCCGATCCCGCCAGCCCCGCCGCGTCCAGAGGCGGGAACCTCTCGG
AGGTCACCGGCCTGAACGGCGAGCAGCTGGAGGACCCCTCCACCGCGTGCGCCGGCATCGCGCGCCACGAGGGTTTCGGG
TCCCAGTGCGAGTTCCTCCGGGCGCACCCGCAGTGCAGCTCCGGCGGGTTCGTCGACTACCTGGATTTCTTTTACTGTCG
GTGCGAGAGGTTCAGGCTGCTTGGCTATGCCGTCCTTGCCGTGTGCCTGGCGGCGCTGTTCTACATGCTCGGTAACACGG
CCGCGGACTACTTCTGCTGCAGCCTCGAGAAGATGTCCGCCCTGCTGCGGCTCCCGCCGACCGTGGCTGGTGTTACCTTG
CTCCCCTTTGGTAATGGTGCTCCTGATGTGTTTGCCAGTATTGCAGCGTTTATGGGGTCTGGCGCCGGGGATGTGGGGCT
GAACAGCGTGCTGGGCGGAGCGGTGTTTGTTACCTGCGTTGTTGTTGGGGCAGTGTCATTGTCCGTCGCGGAGAAGAATG
TGCAGATTGATTGGAGGTGCTTTGTGAGGGATGTTGGATTCTTCCTGATCACCTTGGTGGCACTGTCTATTATGTTGATT
GTCGGGAAGGTGACCGTTTGGGGAGCTATGCTGTTTGTATCGATTTATGTGGTTTATGCATTTGTGGTGGCCGCAAATGA
GTTATTAAGGAAGCACGCACGGATGCTGAAGTTTGATGTAGTCACACCATTGCTTCCTGTGAGGGGAAGTATCTTCTCAC
ACGGGCTAGAGGAGGATGATTCTGTGTACAGTTCACTTCTTGAGGAGGATACAAGTGATGAGGCGGCCCAGGTAAACACA
TCATTGCCGCAGTGGATGTGGGCTTCTCATGTGGCTATCTACTCAAATCAGGGGAGAGATGGTTCGCCTGACAGGCCTTT
GTGGGGTTGGAATGAAGAAGGCAGAGTGGATACGTCCACGCTTAACTACTCCAAAATGTTTCTGTTTTTGGAGCTACCCT
TGACAATACCAAGAAAGTTGACGATTCCAATAGTTGAGGAAGACCGCTGGTCACAAGAATATGCTGTTGCCAGTGCTGGC
TTGGCACCTCTACTCTTATCATTTCTGTGGAACAGCCAGGATGGAGTATCCACGGGTGCCAGGGTAGCAGCATATGTGAT
AGCTGGTATTTTTGGGATTGCACTTGCAGGTCTTGCTTTTACATTCACCAGTCCTGACCGCCCTCCAAGGAGATACTTAC
TCCCATGGGTGTTTGGAGGGTTTGTGATGAGCATCGTTTGGTTCTACATCATTGCCAATGAGCTGGTTGCACTGTTGGTT
GCATTTGGGGTGATACTTGGGATTAATCCTTCAATCCTTGGCTTAACGGTGCTAGCATGGGGCAATTCGATGGGTGACTT
GATGTCAAATGTGGCCTTGGCAATGAATGGAGGAGACGGTGTACAGATTGCTATGTCTGGCTGTTATGCAGGGCCTATGT
TCAACACACTTGCCGGCTTAGGAATATCAATGCTGCTTGGAGCTTGGTCGACAGCACCCAACTCTTACGTTCTTCCACAG
GACCGCTCTCTTATTTACACGATGAGCTTCCTGGTTGCTGGGTTGGTCTGGGCGCTTGTCACGCTGCCACGGAGCGGCAT
GCGGCCTAACAAGACGCTTGGGGTTGGCCTCATTGCTCTTTACTCAGTTTTCCTTTTCATTAGAGTAAGCAGTGCTATGG
GGATATTGCCACTCCCGGGCTTGAATTAGTTGTTTGTGTCTATTGTACATGAATGTTGTTTATACAAATGAAATGA----
-------GTTCCTCTGTTCTGTTGTTCTCATGCCTCAAATTTAGTTGTAGGC-TGTCAGGTGTTGG-AGGCAATAAA-CC
AGAGCTTGCCTGCAACTGGTGTACTTATCTGTAAACTT-ATCACCTTGCATGCTGATAGCAATAATTTTATACTTCTGA-
-TGTTGACTTACCTA--AGGTTCAAAAATAACACTGTACTCCATTTCTGCGCAGCAGTGTGACCTTTTGGTTTAGTTGTT
GTAGAGGCGGTGCTTCTGCGTGAGGGCGCGATCTGTTTTGCAGGCTATTTGACAGAAGCATAGTGACCTGTATTCATGTT
AGCTTGTTATCTAGTACTCCCTTCCAAAATAATTGTCGTGGTTTTAGTTCAAACTTTAAAATTTAAGTTGTTGTAGAGGC
GGTGCTTCTGCGTGAGGGCGCGATCTGTTTTGCAGGCTATTTGACAGAAGCATAGTGACCTGTATTCATGTTAGCTTGTT
ATCTAGTACTCCCTTCCAAAATAATTGTCGTGGTTTTAGTTCAAACTTTAAAATTTAAGTTCTTGTAGAGGCGGTGCTTC
TGCGTGAGGGCGCGATCTGTTTTGCAGGCTATTTGACAGAAGCATAGTGACCTGTATTCATGTTAGCTTGTTATCTAGTA
CTCCCTTCCAAAATAATTGTAGTGGTTTTAGTTCAAACTTTAAAATTTAAACTAAAACCATAACACTTATTTTGGATGGG
AGGGAGTACTCCATAAGATGGTCCCTCGAGGCTATTTGTCCAGCAAACTGGCACTCTCCCTTGTTTAAAGAGTACCGGCA
TCAGGTCATGTTAGCTTGTCATGCAAGGATGTTTTCCCGCTTTGCTGCATGAGAAGGCTTTGCACGATTTTCGCTGTGCG
CCTGAAAGCCCTTAGGCCCTGCTTGGATTGAGTGTAAAATGTGTGCTCCCCGGTATTTTAACTCAAGTTTGAACTAAATA
CTGGGCAT
>chr4B_4
ACATAT----AAAATGTCCAGGAAAATGTAAAAATTAGTTCACGTATTTTTTGGAAAATGTTCATGACATGTAAAAAGAA
ATTTTCATACACTAAATATGGCGGATTACAAAAGATCATCAATTCGAAAAATAAAAAATGAAAAAAATAAATGAAAATGA
AAACCAGTAAAGAA---------------AAAGACCGAACTAAATCTTCCCAAAATTGGTGGAAGGTTTTCAAAGAGAGT
ACGAAAATTT--------CTCGGGTACAACCGCTGTACTGAGACGGCCCACCGCGAGGGATGTCATAGTCCAGAGCTCCA
TACATCGTGAATCATATTCGCCCCTCAT------------TCGACGCTTTGCACACAGTTGGTGAGAGAGTGATCTAACT
GGGCCGCCCCGTTAAGGTGTTCCACCGATCCCGGTTTTGGGAACCTTCTA------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GGAGGTTTCTCACCCGGTTCAGGTGCC
TTTTTT-GTTTTTCCTTTTTTTCTTTCGAGATAGTACGAAATGATTGTAAGGGCTCTGTGATTGAGTAATGCAAGTTTTT
CTCTTGGAGAAAACAATTTGCCTTTTTTATTTTTTAAAA---------------AGTTAGAAATTCATAATTGTTTGGAA
TTTCCAAAAAAGTT--TTTTCTAGAGAAATCTCCATAAGAGTTCGTTTTTTTCC--------------AAAAAATTTAGT
TTTTGTTTTGAGACAAACCAAAAA-----GTTTTTTTTTTCA-------AAAATGTTAGTGTTTCTAAAAGCCGAGGCGG
CTCTGTCAGGAAACGGCTAGCCCAACGAGATCGAGGCCTAATCCATTCCGGCCCACTTAACAGCGACCGTTCCGCTTGCT
TTGTGGCGCGGCATGCGACCGGGGCAACACGCCGTCTCCTTCCCCACATCGTCGTGAATCCCCAATTCCCAACTCACGCG
CTCCGACGACCAAACCCTAACCTCGGATCCC-CGGAAGCACGCCCAATTCCCCAACCCTCCCCTCAGATTCGGCATGCCA
GCCCCCCGAAACTCCAGCCCGTGACCTCGCCGGAGACGATGGCCTCGCGGCCTCTGCATCCCCGCCGGATTCGGCCCATC
GCCGCGGCCTCCCTGGTGCTCTTCCTCCTCTTCCTCTACACCCGCTCGGGTGGGGACTCTCCGCGGCTCCCGGGCTCCGA
TTCGCGCTCGCTCCACCGCAGGTTCCTCTCCGGTGCCGATCCCGCCAGCCCCGCCGCGTCCAGAGGCGGGAACCTTTCGG
AGGTCACCGGGGTGAACGGCGAGCAGCTGGAGAACCCCTCCACCGCGTGCGCCGGCATATCGCGCCACGAGGGTTTCGGG
TCCCAGTGCGAGTTCCTCCGGGCTCACCCGCAGTGCAGCTCCGGCGGATTCGTCGACTATCTGGACTTCTTCTACTGCAG
GTGCGAGAGATTCAGGCTGCTTGGATATGCCGTGCTTGCAGTGTGCCTAGCGGCGCTGTTCTACATGCTCGGTAACACGG
CTGCGGACTACTTCTGCTGCAGCCTCGAGAAGATGTCGGCGCTCCTGCGGCTCCCACCGACTGTGGCCGGTGTCACGCTG
CTCCCCTTTGGTAATGGTGCTCCTGATGTGTTTGCCAGTATTGCAGCGTTTATGGGGTCTGGCGCCGGGGATGTGGGGCT
GAACAGCGTGCTGGGCGGAGCGGTGTTTGTTACTTGTGTTGTTGTTGGGGCAGTGTCGTTGACCGTTGCAGAGAAGAATG
TGCAGATTGATTGGAGGTGCTTTGTGAGGGATGTTGGATTCTTCCTGATCACCTTGGTGGCACTGTCGATTATGTTGATT
GTCGGGAAGGTGACCGTTTGGGGAGCTATGCTGTTTGTGTCGATTTATGTGGTTTATGCATTTGTGGTTGCTGCAAATGA
GTTATTAAGGAAGCACGCACGGATGCTGAAGTTTGATGTAGTCACACCATTGCTTCCTGTGAGGGGAAGTATCTTCTCAC
ACGGACTAGAGGAGGATGATTCTGTGTACAGTTCACTTCTTGAGGAGGACACAAGTGATGAGGCGGCCCAGGTAAACACA
TCATTGCCGCAGTGGATGTGGGCTTCTCATGTGGCTATCTACTCAAATCAGGGGAGAGATGGTTCACCTGACAGGCCTTT
GTGGGGTTGGAATGAGGAAGGCAGAGTGGATACCTCCACGCTTAACTACTCCAAACTGTTTCTGTTTTTGGAGCTACCCT
TGACAATACCAAGAAAGTTGACGATTCCAATAGTTGAGGAAGACCGCTGGTCACAAGAATATGCTGTTGCTAGTGCTGGC
TTGGCACCTCTACTCTTAGCATTTCTGTGGAACAGCCAGGATGGAGTATCCACGGGTGCCAGCGTAGCAGCATATGTGAT
AGCTGGTGTTTTTGGGATTGCGATTGCTGTTCTTGCTTTTACATTCACCAGTCCCGACCGCCCTCCAAGGAGATACTTAC
TCCCATGGGTGTTTGGAGGGTTTGTGATGAGCATCGTTTGGTTCTACATCATTGCCAATGAGCTGGTTGCACTGTTGGTT
GCATTTGGAGTGATACTTGGAATTAATCCGTCAATCCTTGGGTTAACGGTGTTAGCATGGGGCAATTCGATGGGCGACTT
GATGTCAAATGTGGCCTTGGCAATGAATGGAGGAGACGGTGTGCAGATTGCTATGTCTGGCTGTTATGCTGGGCCTATGT
TCAATACACTTGCCGGCTTAGGAATATCGATGCTGCTTGGAGCTTGGTCGACAGCACCCAACTCTTATGTTCTTCCGCAG
GACCGCTCTCTTATTTACACGATGAGCTTCCTGGTTGCTGGATTGATCTGGGCACTTGTTACGCTGCCACGGAGCGGTAT
GCGGCCTAACAAGACGCTTGGGGTTGGCCTCATTGTTCTCTACTCAGTTTTCCTTTTCATTAGAGTAAGCAGTGCTATGG
GGATATTGCCACTCCCGGGCTTGAATTAGTTGTTTGTGTCTATTGTACATGACTGTCCTGTATACAGATGAAATGGGGTT
GTACATTGTTCCTCTGTTCTGTTGTT---ATGCCTCAAATTTGGTTGTATGCCTGTCAGGCTTTCAGAGACAATAAAGCC
AGAGCATGCCTGCAACTGGTCTACTTATTTGTAAGCTTAATCACCTTTCATGCTGATAGCAATAATC-TAAACTTCTGCT
GTGTCAACTTATCTATAAGGTACAAAAAAAG----GTACTCCATTTCTGTGCAGCAGCGTTATCTTTTGGTTTACTTGCT
GTAGAGCTGGTGCTTCTG--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------
>chr4D_196
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATCTTCCCGAAACTGGTGGAAGGTTTCCAAAGCGAGC
ACTACATTCCGAAAACTGCTCGGGTACAATCGCTCTATTGAGATGGCCCACCGCGAGGAATGTCGTAGTGCAGAGCTCCA
TACATCGTGAATCCTATTCGCACCCCATTGCGTCGAACTATCCATGCTTCGCACACAGTTGGTGAGAGAGT-ATCTAACT
GGGTCACCCCGTTAAGGTGTTCCACCGATCCCAGTTTTGGGAACCTTCTACTCCCTCCGCTCCTAAATATTTGTCTTTTT
AGAGATTTCAAATGGACTACCACATACGGATGTATATAGACATATTTTATAGTGTAGTTTCACTCATTTTGCTTCATACG
TAGTCACGTGTTGAAATCTCTAGAAAGACAAATATCTAGGAACGGAGGGAGTAGGAGGTTTCTCACCCGGTTCAGGTGCC
TTTTTC-GTTTTTTCCCTTTTTATT-------------------------------------------------------
--------------AATTTGCCTTTTTA--TTTTAAAAAGTTTAATGTTTAAAAAATTCAGAATTTATT-TTTTTTGGAA
TTTCCAATAAAGTTA-TTTTTTTGAGAAATCTCCAAAAGAGTTAGTTTTTCTCC--------------AAAAAA------
------------------------------------------------------GTTGGTGTTTCTAAAAGCCGAGGCGA
CTCTGTCAGGAAACGGCTAGCCCAACGAGATCGAGGCCTAATCCAATTCGGCCCACTTAACAACGACCGTTCCGTTTGCT
TCGTGGCGCGGCATGCGACCGGGGCAACACGCCGTCTCCTTCCCCACATCGTCGTCAATCCCCAATTCCCAAATCACGCG
CTCCGACGACCAAACCCTAACCTCGGATCCC-CGGAAGCACGCCAAATTCGCCAACCCTCCCCTCAGATTGGGCATGCCA
GCCCCCCGAAACTCCAGCCCGTGACCTCGCCGGAGACGATGGCCTCGCTGCCGCCGCATCCCCGCCGGATTCGGCCCATC
GCCGTGGCCTCCCTGGTGCTCTTCCTCCTCTTCCTCTACACCCGCTCGGATGGGAACCCTCCGCGGCTCCCGGGCTCCGA
TTCGCGCCCGCTCCACCGGAGGCTCCTCTCCGGTGCCGATCCCGCCAGCCCCGCCGCGTCCAGAGGCGGGAACCTTTCGG
AGGTCACCGGGCTGAACGGCGAGCAGCTGGAGAACCCCTCCACCGCGTGCGCCGGCATCGACCGCCACGAGGGTTTCGGG
TCCCAGTGCGAGTTCCTCCGGGCTCACCCGCAGTGCAGCTCCGGCGGGTTCGTCGACTACCTGGACTTCTTCTACTGCAG
GTGCGAGAGATTCAGGCTGCTTGGATATGCCGTGCTTGCAGTGTGCCTCGCGGCGCTGTTCTACATGCTCGGTAACACGG
CCGCGGACTACTTCTGTTGCAGCCTAGAGAAGATGTCTGCGCTGCTGCGGCTACCGCCGACAGTGGCTGGTGTTACCCTG
CTCCCCTTTGGTAATGGTGCTCCTGATGTGTTTGCCAGCATTGCAGCGTTTATGGGGTCTGGCGCCGGGGATGTCGGGCT
GAACAGCGTGCTGGGCGGAGCGGTGTTTGTTACCTGCGTCGTTGTTGGGGCAGTATCATTGTCCGTCGCGGAGAAGAATG
TGCAGATTGATTGGAGGTGCTTTGTGAGGGATGTTGGATTCTTCCTGATCACTTTGGTGGCACTGTCTATTATGTTGATT
GTCGGGAAGGTGACCGTTTGGGGAGCTATGCTGTTTGTATCGATTTATGTGGTTTATGCATTTGTGGTGGCTGCAAATGA
GTTATTAAGGAAGCATGCACGGATGCTGAAGTTTGATGTAGTCACACCATTGCTTCCGGTGAGGGGAAGTATCTTCTCAC
ACGGACTAGAGGATGATGATTCTGTGTACAGTTCACTTCTTGAGGAGGATACAAGTGATGACGCGGCCCAGGTAAACACA
TCATTGCCGCAGTGGATGTGGGCTTCTCATGTGGCTATCTACTCAAATCAAGGGAGAGATGGTTCACCTGACAGGCCTTT
GTGGGGTTGGAATGAAGAAGGAAGAGTGGATACCTCCACGCTTAACTACTCCAAACTGTTTCTGTTTTTGGAGCTACCCT
TGACAATACCAAGAAAGTTGACGATTCCAATAGTTGAGGAAGACCGCTGGTCACAAGAATATGCTGTTGCCAGTGCTGGC
TTGGCACCTCTACTCTTAGCATTTCTGTGGAACAGCCAGGATGGAGTATCCACGGGTGCCAGCGTAGCAGCATATGTGAT
TGCTGGTATTTTTGGGATTGCACTTGCAGGTCTTGCTTTTACATTCACCAGTCCCGACCGCCCTCCAAGGAGATACTTAC
TCCCATGGGTGTTTGGAGGGTTTGTGATGAGCATCGTTTGGTTCTACATCATTGCCAATGAGCTGGTTGCACTGTTGGTT
GCATTTGGAGTGATACTTGGGATTAATCCTTCAATTCTCGGTTTAACGGTGTTAGCATGGGGCAATTCGATGGGTGACTT
AATGTCAAATGTGGCCTTGGCAATGAATGGTGGAGATGGTGTACAGATTGCTATGTCTGGCTGTTATGCAGGACCTATGT
TTAATACACTTGCTGGCCTAGGAATATCGATGCTACTTGGAGCTTGGTCGACGGCACCCAACTCTTATGTTCTTCCGCAG
GACCGCTCTCTTATTTACACGATGAGCTTCCTGGTTGCTGGGTTGATCTGGGCGCTTGTTACGCTGCCACGAAGCGGCAT
GCGACCTAACAAGACGCTTGGAGTTGGCCTCATTGCTCTCTACTCAGTTTTCCTTTTCATTAGAGTAAGCAGTGCTATGG
GGATATTGCCACTCCCGGGCTTGAATTAGTTGTTTGTGTCTATTGTACATGACTGTCCTTTATACAGATGAAATGGAGTT
GTACATTGTTCCTCTGTTCTGTTGTT---ATGCCTCAGATTCGGTCGTATGCCTGTCAGGCTTTCT-AGACAATAAAGCC
AGAGCATGCCTGCAACTGGTCTACTTATCTGTAAGCTTAATCGCCTTTCATGCTGATAGCAATAATTTTAAACTTCTGCT
GTGTCAACTTATCTA--AGGTACAAAAA----------------------------------------------------
--------------------------------------------------------------------------------
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--------
>SNPs
S-SSSSSSSS--S-------S--------------S-SSS-SSSS--------S--------S--SS---------S---
--S---S--S--S---SS----S-----------S---------S---S--S---S------SS-------S---SS-S-
-----------S--SSSSSSSSSSSSSSS------------------------------------------S--------
--S-SS------S-------S--------S--------------------------------------------------
---------S-------------------------S--------------S----S------S-----------------
--------------------------S------S----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------S--S--------
--S---S-----S-----S---S---------------------------------------------------------
----------------S--------------------------------S-----------------S--S---S-----
---------------S---------S------------------S-------SSSSSSSSSSSSSSSS------SS--S-
----------------S-------SSSSS----------SSSSSSSSSS----S--------------------------
----------------S--------S-------------------------------------S----------------
--S----------S-----------------------------------------------------------S------
----------------------S--------S------------------------------------------------
---S----------------------------S-S---------------------------------------------
--------------------S------------------------S------------S---------------------
--------------S----S-------------S-----------------------------------------S----
----------S---------------------S-----------------------------------------------
-----------------------S-----------------------------------------S-----S-----SS-
---------S--------------S--------S-----S--------S-------------------------------
-------------------------------------S--S--------------------S---------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
---------------------------------S---------------------S------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------S-----------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------S--------------------------------S---------S----------------------------
--------------------------------------------------------------------------------
----S-----------------------S--------------------------------------S--------S---
---------------------------------------------S-------------S--------------------
---------------------------------------S----------------------------------------
----------------------------------------------------S---SS--------S--------S----
--------------------------SSS-------------S------S----------SS--SS---S----------
-----S--------------S-------------S------------S----------------------S-------S-
----SS-----S---------S------S-SSSSS--------------S-------S--S-S-----------S---S-
------SS----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_1043
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AGACCGTTCCGTTTGCT
TCT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------
>reverse_2909
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------AATGCTGCTTGGAGCTTGGT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>forward_1718
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCAGCCTCGAGAAGATGTCC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------
>reverse_3590
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------GTTGTAGAGGC
GGTGCTTCT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------
