>input_sequence_41212
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-----------------------------------------------ATGTCTGACAGTCAGGTCCAGGCCATAGAAGAA
CTTGATGAGTTCTATAAGGCGGTTGATAGGGTACTGGTTGCCTCTACTGTGAAGATTATTGACGTAGCAAGATATGATGT
CATTCCAAACTTTGACATCAGTGAGACCCCTACGCGAAGGGAGCTTGGTCGATTGTTCAACAGGCGGAACAGTCACTTCA
AGTCCATAGCGTCATTGAACATCCAGTATGACAAACTCTCTGGCCAAAACGATGAGATCCCAGTGACTCCAGTGTACCCT
CTTGATGTATGTATGATCTAGCATTTTATTTCATATATGTTTGCTTTTATGTCTTTTGTTCTGATATATCAACTGCCTGT
TTTTTGTTTGTTATCCTTGTTCCAACTAGTTGAAAATTTCACCGGTTAGGATGCCCTAGACAAGGCCACAATTCATCAGG
ATGGTGGAAGCCTTCTTTCCATAGATATCATTAAATAATTAATCATGCTATTTCTCGAAACAAATGCTGAAGGACAGTCC
AGCCTCATGTAAATTGTACCTGAATTAAACTAGGAGGTTGAAACCTTAATTTTTAACTAAGAGCTGCTATGCTTGATGTT
TCGTTTTTATATGAAAAGTATTACTCCCTCTCATCGGAAATAAGTGTCCCAGTTTTGAACTAAGATTAGTTCAACCTTAG
TTAAAAACTGTGACACTTATTATGGATCAGAGGGAGTACCTTTTTGGCTTTTGCTTGTTTC---------------GGGA
AGTCAAGCCTACTTGTTGAATTATTATTTTTGAAGGAAAAAATGTTAAATTTTGTAGGGTATTAACTGGACTTATAAATG
CTTATATTTATGATAACGCTCCAAGTGGCCCATCAGAAATTTCAATACATTATTCTGCTTCATGCAGGACGAGTTTCACA
CATTTCACACTGTTACCATCCGGGGCAGAGGTGTGACACTTGTGGTTCTAGTACGGGATTCAGATAACTACGTCCTTGCA
GTCAAAGTGTATTTAACTGAAGAAGAGTCCCGTGTTGCTCCTTGGTTTCTCTTTGAAGGTGTGAAACTTCCAAGCAGGTT
CAAGAATGTTGTGCCAACAAACTATAGTTTTGGTCATGACTACAAGTATGATCATGTTCTCTTTTCTTGTCAGTTAACTC
TATCTTCTATCCAGAAATTATGATAGTGGTCTAATTGTCTGTATTTTTATCATTTTCAGGGGTGAGATTAAATTTGGTAA
AAATGTCTTACCTAAACTGATGGATTTTATGGTCCAGCTCCGACTTGATCCAGGACAGACAGCCACTGACAAAAACAATC
TCTTGCTGGGCGCTTTGTTCGTGTTGCTAGGTGAAGCTCAGCAGTTCAGGCGGGTTAGGAATTGGACCATGCGGACTCTG
AGATGCATTGAACCTAAACCCGTTCCAAAGTGCCTTAGTTTGTTATTCCAATCTTGGTCGGATATATCGAAAACCATTTT
TCACTTTGTGTTGGGATTGGAAAGCATGCGCCTGATTGCACCACAGACGAAATCCTTGGATCTAGAAGAGAACTACTTCA
TGATGAAAGCTCTAGAAGAATGGGAAAACAGCAGAAGAGTACACAATGATATGAAACAGTGTGGATTAAAGTACAGAAAC
AGTGAAGGAGAGATCTCGCTTGGTTGTCTCCTTGGTGGTGAATTGCTGTTATTGCGGCATGATCCGATATTGTGCACCAA
AATTTTGATGAGAAGACAAGACTTTGCGGGCGATGTTAATCTCTGTAAGATTGTTGTTTCTTACAAAATGCCACAGCTTC
CAGAGCCAGAGCAGCAAGTGCCACCGCAGGAAGAGCCTCAGCATCAAGTGCCACCGCAGGAAGAGCCTCAGCAAGAAGTG
CCACCGCAGGAAGAGCCTCAGCAGCAGGTGCCACAACTTCCAGAGCCACAGTAG--------------------------
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>chr2B_1_TraesCS2B01G134800
CAGTTTTTACCATTTCTCACTGTTGCATGTTTTAGTACTTGAATTAAAAAATCTGTTTGTTTGCTTTTCTTCAACTGAAG
TCCAAAACTGCTGGATTCTCTTGAAATGTTCTCTAGTGCCCTATATGTTCTTCTATGAGTACAAATGTACAATTGTTGCT
GTCTGTGGCAGTTTTTGGCAATTTTTACTGTTGGTTGTTTATCATATTGCAACTCTTTATATTGTAATCACTAGTTACAC
GAGCATCATGGTACAGCCTTATACTACGTTTCAAGTACTGTTTTTTTTGTATATTGACTTGTTTGCACGCAACACCTGCT
CTAACTGCTCTTAACTTTCTCTGCAATGCAGACACTTGTTATTTGAGGAGGAATCTCTTGTTTGCAGAGGACCAATTGAG
CTAACAACTGTCTGTTTGATTTTGATCAACCAGGTAAAAAA--AACTGCTTATTCGCTTAAAACGTTCTCTAGTGTCCTA
TATGTTCTTCTATGGGGTACAAGTGTGTTGCTGTTTGTGGCTGTTTTTGCCATTTTTTACCATTGCATGTTTATCAGTTG
AGTGAAAAAAACTATATTCTTGATTTGGATCAACTGAGGTAAAAATTTAAATTGTACTCCCTCCATCCGGAAATACTTGT
CCCGGGATTGGATGTATCTAGATGTATTTTAGTTCTAGATACAT-CCATTTGTATCCATTTTTTCAACAAGTATTTCCGG
ACAGAGGGAGTATATTTTTAATGTATATTGCTAGTATTTTTTGCT----TATTGGTACTACCTACTAGCATTATCGACTT
GTTTAGCTATATTGCTGCATGTATTGATTCCACATTTATCTATACTCCTACTCCCACAAACTATACATGCAGTATTTTTT
TACCTATATGCACTTTATGTTTCATCCTGCATTTATTTTGTACGTTGAAGTATTGCTTGCACATTTATGGTGACATCCCG
TACATGGTTATTGACTTTTTTGCCTATATGCACTACCTCTTCCAGTCATGTCTGACAGTCAGGTCCAGGCCATAGAAGAA
CTTGATGAGTTCTATAAGGCGGTTGATAGGGTACTGGTTGCCTCTACTGTGAAGATTATTGACGTAGCAAGATATGATGT
CATTCCAAACTTTGACATCAGTGAGACCCCTACGCGAAGGGAGCTTGGTCGATTGTTCAACAGGCGGAACAGTCACTTCA
AGTCCATAGCGTCATTGAACATCCAGTATGACAAACTCTCTGGCCAAAACGATGAGATCCCAGTGACTCCAGTGTACCCT
CTTGATGTATGTATGATCTAGCATTTTATTTCATATATGTTTGCTTTTATGTCTTTTGTTCTGATATATCAACTGCCTGT
TTTTTGTTTGTTATCCTTGTTCCAACTAGTTGAAAATTTCACCGGTTAGGATGCCCTAGACAAGGCCACAATTCATCAGG
ATGGTGGAAGCCTTCTTTCCATAGATATCATTAAATAATTAATCATGCTATTTCTCGAAACAAATGCTGAAGGACAGTCC
AGCCTCATGTAAATTGTACCTGAATTAAACTAGGAGGTTGAAACCTTAATTTTTAACTAAGAGCTGCTATGCTTGATGTT
TCGTTTTTATATGAAAAGTATTACTCCCTCTCATCGGAAATAAGTGTCCCAGTTTTGAACTAAGATTAGTTCAACCTTAG
TTAAAAACTGTGACACTTATTATGGATCAGAGGGAGTACCTTTTTGGCTTTTGCTTGTTTC---------------GGGA
AGTCAAGCCTACTTGTTGAATTATTATTTTTGAAGGAAAAAATGTTAAATTTTGTAGGGTATTAACTGGACTTATAAATG
CTTATATTTATGATAACGCTCCAAGTGGCCCATCAGAAATTTCAATACATTATTCTGCTTCATGCAGGACGAGTTTCACA
CATTTCACACTGTTACCATCCGGGGCAGAGGTGTGACACTTGTGGTTCTAGTACGGGATTCAGATAACTACGTCCTTGCA
GTCAAAGTGTATTTAACTGAAGAAGAGTCCCGTGTTGCTCCTTGGTTTCTCTTTGAAGGTGTGAAACTTCCAAGCAGGTT
CAAGAATGTTGTGCCAACAAACTATAGTTTTGGTCATGACTACAAGTATGATCATGTTCTCTTTTCTTGTCAGTTAACTC
TATCTTCTATCCAGAAATTATGATAGTGGTCTAATTGTCTGTATTTTTATCATTTTCAGGGGTGAGATTAAATTTGGTAA
AAATGTCTTACCTAAACTGATGGATTTTATGGTCCAGCTCCGACTTGATCCAGGACAGACAGCCACTGACAAAAACAATC
TCTTGCTGGGCGCTTTGTTCGTGTTGCTAGGTGAAGCTCAGCAGTTCAGGCGGGTTAGGAATTGGACCATGCGGACTCTG
AGATGCATTGAACCTAAACCCGTTCCAAAGTGCCTTAGTTTGTTATTCCAATCTTGGTCGGATATATCGAAAACCATTTT
TCACTTTGTGTTGGGATTGGAAAGCATGCGCCTGATTGCACCACAGACGAAATCCTTGGATCTAGAAGAGAACTACTTCA
TGATGAAAGCTCTAGAAGAATGGGAAAACAGCAGAAGAGTACACAATGATATGAAACAGTGTGGATTAAAGTACAGAAAC
AGTGAAGGAGAGATCTCGCTTGGTTGTCTCCTTGGTGGTGAATTGCTGTTATTGCGGCATGATCCGATATTGTGCACCAA
AATTTTGATGAGAAGACAAGACTTTGCGGGCGATGTTAATCTCTGTAAGATTGTTGTTTCTTACAAAATGCCACAGCTTC
CAGAGCCAGAGCAGCAAGTGCCACCGCAGGAAGAGCCTCAGCATCAAGTGCCACCGCAGGAAGAGCCTCAGCAAGAAGTG
CCACCGCAGGAAGAGCCTCAGCAGCAGGTGCCACAACTTCCAGAGCCACAGTAGCAAGAGCCTCAGCAGCAGGTGCCGCA
ACTTCCAGAGCCACAGCAGCAAGTTGTACAGCTGCCAGAGCCACAGCAGGATGGCCAGGTGCAGAGCAGTAGCATGGGCG
GTAGCAACAGGAAGAAGAAGGGCAAGCTCAATGAAGAGAAGCGTCAGGAAGAGTTGGAGAGGAGGAGGAAACTGGATGAT
GAGCAGCAACAGCAGGAAGTGCCTGATAAGAACCGGAGGAAAAACAAGAAGGGCAACAGCAGACTAAGGAAGCAGCAGCA
GTAAAGAGAAAAGCAAGTAAATGGTTGGCCTGTCCCCTGCTAATGCCAAAGGTTGCTGAGCAGTAGCTGTTCGTGCGTGA
GAAGAACTGGAAGAACAATAGCAACAGCGGTGAGAGCAAGACAGGAAGCGTCATCAGTTAAGTGAAAGAGTAGCCCGTTT
TACTTGCTATTGCCAATGGCACGCATATTCTTGCAGATTAGTTTTTTTTTCTGTTTGTAGTCTTGTATCTCAGTTAAGTG
----------------AAAGCTAGGCTGCACCTTCTCTCAGTGGTTTTAGAGGTATGAGGTGCTGAATGATGATTTGGAT
GCTCTGTTCAACCTCTGCTCTTTACCACTTCAGCAAGAAATCTGGATCTTTCAGATTATATTGATATGTCCTGTCATGTA
TATTGAATGCTGGGGTGCGATTGAATTTACTGATAATTCCATTTTGGAGGCATGTTTGGTTCTGTCACTCATTTGGTGCA
GGTGCTGGAGACCGCTGATAAAGCAAGAGAATGTCACTTTGAATAATCTGTGTTTGTTATACAGGAATGAGAAAAACAGC
TAAAACTTGAATGAGGTCTTCTTCTATTGCCTTTGTTGTAGTAAATTTATTTAGCTAGTGATGGTTCTTACGGTGGGCTT
GCTGTGTTGTGCCAATTTGGTAGCAATATGTAACAATTTCTTATTGCCAAATAATTTGAAAGGGCGGGCAGTTTGCTGAA
AAAAAGGTAGTAGTCAGAGGCATCAGTATG
>chr2D_1
CAGTTTTTACCATTTCTCACTGTTGCATGTTTTAGTACTTGAATTAAAAAATCTGTTTGTTTGCTTTTCTTCAACTGAAG
TCCAAAACTGCTGGATTCTCTTGAAATGTTCTCTAGTATCCTATATGTTCTTCTATGAGTACAAATGTACAATTGTTGCT
GTCTGTGGCAGTTTTTGGCAATTTCTACTGTTGGTTGTTTATCATATTGCAACTCTTTATATTGTAATCACTAGTTACAC
GAGCATCATGGTACAGCCTTATACTACGTTTCAAGTACTG-TTTTTTTGTATATTGACTTGTTTGGACGCAACACCTGCT
CTAACTGTTCTTAACTTTCTCTGCAATCCAGACACTTGTTATTTGAGGAGGAATCTCTTGTTTGGAGAGGACCAATTGAG
CTAACAACTGTTTGTTTGATTTTGATCAACCAGGTAAAAAAAGAACTGATTATTCGCTTAAAACGTTCTCTAGTGTCCTA
TATATTCTTCTATGGGGTACAAGTGTGTTGCTGTTTGTGGCTGTTTTTGCCATTTTTTACCATTGCATGTTTATCAGTTG
AGTGAAAAAAACTATATTCTTGATTTGGATCAACTGAGGTAAAAATTT--------------------------------
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>chr2D_604
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---------------------------------------------TTTAAATTGTACTCCCTCCGTCCGGAAATACTTGT
CCCGGGATTGGATGTATCTAGATGTATTTTAGTTCTAGATACATTCCATTTGTATCCATTTTTTCGACAAGTATTTCCGG
ACAGAGGGGGTATATTTTTAATGTATATTGCTAGTATTTTTTGCTTACTTATTGGTACTACCTACTAGCATTATGGACTT
GTTTAGCTATATTGCTGCATGTATTGATTCCACATTTATCTATACTCCTACTCCCACAAACTATACATGCACTATTTTTT
TACCTATATGCACTTTCTGTTTCATCCTGCATTTATTTTGTACGTTGAAGTATTGCTTGCACATTTATGGTGACATCCCG
TACATGGTTATTGACTTTTTTGCCTATATGCACTACCTCTTCCAGTCATGTCTGACAGTCAGGTCCAGGCCATAGAAGAA
CTTGATGAGTTCTATAAGGCGGTTGATAGGGCACTGGTTGC--------------TTATTGACGTAGCAAGATATGATGT
CATTCCAAACTTTAGCATCAGTGAGACCCCTACGCGAAGGGAGCTTGGTCGATTGTTCAACAGGCGGAACAGTCACTTCA
AGTCCATAGCGTCATTGAACATCCAGTATGACAAACTCTCTGGCCAAAACGATGAGATCCCAGTGACTCCAGTGTACCCT
CTTGATGTATGTATGATCTAGCATTTTATTTCATATATGTTTGTTTTTATGTCTTTTGTTCTGATATATCAACTGCCTGT
GTTTTGTTTGTTATCCTTGTTCCAACTAGTTGAAAATTTCACCGGTTAGGATGCCCTAGACAAGGCCACAATTCATCAGG
ATGGTGGAAGCCTTCTTTCCATAGATTTCATTAAATAATTAATCATGCTATTTCTCGAAACAAATGCTGAAGGACAGTCC
AGCCTCATGTAAATTGTACCTGAATTAAACTAGGAGGTTGAAACCTTAATTTTTAACTAAGAGCTGCTATGCTTGATGTT
TCGTTTTTATATGAAAAATATTACTCCCTCTCATCGGAAATAAGTGTCCCAGTTTTGAACTAAGATTAGTTCAACCTTAG
TTAAAAACTGTGACACTTATTATGGATCAGAGGGAGTACCTTTTTGGCTTTTGCTTGTTTCCTGTACACAGTTCAGGGGA
AGTCAAGCCTACTTGTTGAATTATTATTTTTGAAGGAAAAAATGTTAAATTTTGTAGGGTATTAACTGGACTTATAAATG
CTTATATTTATGATAACGCTCCAAGTGGCCCATCAGAATTTTCAATACATTATTCTGCTTCATGCAGGAAGAGTTTCACA
CGTTTCACACTGTTACCATCCGGGGCAGAGGTGTGACACTTGTGGTTCTAGTACGGGATTCAGATAACTACGTCCTTGCA
GTCAAAGTGTATTTAACTGAAGAAGAGTCCCGTGTTGCTCCTTGGTTTCTCTTTAAAGGTGTGAAACTTCCAAGCAGGTT
CAAGAATGTTGTGCCAACACACTATAGTTTTGGTCATGACTACAAGTATGATCATGTTCCCTTTTCTTGTCAGTTAACTC
TATCTTCTATCCAGAAATTATGATAGTGGTCTAATTGTCTGTATTTTTATCATTTTCAGGGGTGAGATTAAATTTGGTAA
AAATGTCTTACCTAAACTGATGGATTTTATGGTCCAGCTCCGACTTGATCCAGGACAGACAGCCACTGACAAAAACAGTC
TCTTGCTGGGCGCTTTGTTCGTGTTGCTAGGTGAAGCTCAGCGGTTCAGGCGGGTTAGGAATTGGACCATGCGGACCCTG
AGATGCATTGAACCTAAACCCGTTCCAAAGTGCCTTAGTTTGTTATTCCAATCTTGGTCGGATATATCAAAAACCATTTT
TCACTTTGTGTTGGGATTGGAAAGCATGCGTCTGATTGCACCACAGATGAAATCCTTGGATCTAGAAGAGAACTACTTCA
TGATGAAAGCTCTAGAAGAATGGGAAAACAGCAGAAGAGTACACAATGATATGAAACAGTGTGGATTAAAGTACAGAAAC
AGTGAAGGAGAGATCTCGCTTGGTTGTCTCCTTGGTGGTGAATTGCTGTTATTGCGGCATGATCCGGTATTGTGCACCAA
AATTTTGATGAGAAGACAAGACTTTGCGGGCGATGTTAATCTCCGTAAGATTGTTGTTTCTTACAAGATGCCACAGCTTC
CAGAGCCACAGCAGCAAGTGCCACCGCAGGCAGAGCCTCAGCATCAAGTGCCACCGCAGGA-------------------
-----------AGAGCCTCAGCAGCAGGTGCCACAACTTCCAGAGCCACAGCAGCAAGAGCCTCAGCAGCAGGTGCCGCA
ACTTCCAGAGCCACAGCAGCAAGTTGTACAGCTGCCAGAGCCACAGCAGGATGGCCAGGTGCGGAGCAGCAGCATGGGCG
GTAGCAACAGGAAGAAGAAGGGCAAGCTCAATGAAGAGAAGCGTCAGGAAGAGTTGGAGAGGAGGAGGAAACTGGATGAT
GAGCAGCAACAGCAGGAAGTGCCTGATAAGAACCGGAGGAAAAACAAGAAGGGCAACAGCAGACTAAGGAAGCAGCAACA
GTAAAGAGAAAAGCAAGTAAATGGTTGGCCTGTCCCCTGCTAATGCCAAAGGTTGCTGAGCAGTAGCTGTTCGTGCGTGA
GAAGAACTGGAAGAACAATAGCAACAGCGGTAAGAGCAAGACAGGAAGCGTCATCAGTTAAGTGAAAGAGTAGCCCGTTT
TACTTGCTATTGCCAATGGCACGCAGATTCTTGCAGAT---TTTTTTTTTCTGTTTGTAGTCTTGTATCTCAGTCAAAAA
ATGTAATCATGACTGTAAAGCTAGGCTGCACCTTCTCTCAGTGGTTTTAGAGGTATGAGGTGCTGAATGATGATTTGGAT
GCTCTGTTCAACCTCTGCTCTTTACCACTTGAGCAAGAAATCTGGATCTTTCAGATTATATTGATATGTCCTGTCATGTA
TATTGAATGCTGGGGTGCGACTGAATTTACTGATAATTCCATTTTGGAGGCATGTTTGGTTCTGTCACTCATTTGGTGCA
GGTGCTGGAGACCGCTGATAAAGCAAGAGAATGTCACTTTGAATAATCTGTTTTTGTTATACAGGAATGAGAAAAACAGC
TAAAACTTGAATGAGGTCTTCTTCTATTGGCTTTGTTGTAGTAAATTTATTTAGCTAGTGATGGTTCTTACAGTAGGCTT
GCTGTGTTGTGCCAATTTGGTAGCAATATGTAACAATTTCTTATTGCCAAATAATTTGAAAGGGCGGGCAGTTTGCTGAA
AAAAAGGTAGTAGTCAGAGGCATCAGTATG
>SNPs
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-------------------------------------SS-----------------------------------------
------------------------S-------------------------------------------------------
----------------------------------------S------------------------S--------------
-------S-------------------S------------------------------------S---------------
-----------S------------------------------------S-------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-----------------------------------------------------------------S--------------
--------S-----------------------------------------------------------------S-----
-----------------------------------------------------------------------S--------
----------------S---------------------------------------------------------------
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-------------------------------S---------SSSSSSSSSSSSSS-------------------------
-------------SS-----------------------------------------------------------------
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-------------------------------------------S------------------------------------
S-------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
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-----------------S--------------------------------------------------------------
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--------------------------------------S------------------------------S----------
-S------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-------------------S---------------------------------------S--------------------
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-----------------------------------------------------------------------------S--
------------------------------------------S---------------------------------S---
--------------------------------------------------------------------S-----------
------------------------------S----------------S--------------------------------
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------------------------------------------------------------------S-------------
-------------------------------------------S----------------------S-------------
--------S---------------------S------------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----------------------------------------S----------------------------
--------------------------------------------------------------S------S----------
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-----------------------------------------------------------------------------S--
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-------------------------------S------------------------------------------------
-------------------------S------------SSS---------------------------------S--SSS
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------------------------------S-------------------------------------------------
--------------------S-----------------------------------------------------------
---------------------------------------------------S----------------------------
-----------------------------S-----------------------------------------S--S-----
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>forward_729
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-------------------------------------------------------------------CAAGTATTTCCGG
ACAGAGGGA-----------------------------------------------------------------------
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>reverse_2511
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------------------------------CCTGATTGCACCACAGACGA------------------------------
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>forward_1922
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--------------------------------------------------------------TGCAGGACGAGTTTCACA
CA------------------------------------------------------------------------------
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>reverse_3312
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-------------------------------GAGAGCAAGACAGGAAGCGT-----------------------------
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