>input_sequence_41199
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------------------------------------------------------------ATGGCATTGCCAACCGCGGT
AGTAGCCGGCGTTGCCGCGTCCGTCGCCACGCTGGTGCTGCTGGCGGTCGCCGCTGCGGTCTGTTGCTGGTGGCTAGCGG
CGCGCCGTAGCCGGACCTCCGACACCGCCTCCGACGAAACTCCTCCCACGCTGGGTAAG------TAACTGACACCAGCA
AAGTAGTAGCAATTCGCGCC---------------GCTTCATCCGCTGCAATTTTTTGCGCATTTTCCCGTAACTAACGT
TTTGTAT-GTTTGGTCCCAGCGGAGTGGGGCAGGTGCGGCCGGACGTCGTCGGCGCCGGACTACCAGGGCGCCAGGCGGT
TCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTTCAGCGACGCCAACCTCGTCGGCGCCGGCACCTTCGGGAAGGTG
TACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGTCGGCCAGCCGCGCCAGGACTTCGTCGACGA
GGTACCTACAAACATCTGAAATCTCTGCTAGCTCAGGAACCA--GTGACATCCCTGCATTTCCTCATTTCTCATTTAGTT
TCTGAAAAACTGGCTAGATTTTCGCCTCGACAAGGAAGTAATTGAACTCTCTACTTACACCCTTACACGAGACGACGGTT
CATGAATTGTCTCTGTACTTGACTGAATTCGCCTCTCACCTCATGGGGGTTTCATTG------------TGCAGGTAAGG
CGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTGCCAGGACGGGGGTCTGCAGATGCTCGTCTT
CGAGCACCTGCCCAACGGCAGCGTCTGCGGCCACCTATACGGTAAT--GCAGTTGCACAGCTCCATTCCTTGTCAGACAA
ATTCGAAGCAGCAAACAACCCAACGCTAACGCGCCGACGCTGCATCAATTTACCAGATACCGGCAAAGAGTCCATGACAA
GGCTGGAGTTCAAGCAGAGGCTCTCGATCGCCATCGGAGCAGCCAAAGGTACTGGTAACCCAGAACTTATTACACAATGC
ACTGTGTTTGTTTCA----------------------GAAACAGAGTGTCTGAACTCTGAACTTCATTGCAGGTCTGGAC
CATCTGCACAGCCTCGCGCCTCCCTTGATCCACAAGGGCTTCAAGACGAGCAACGTCCTGGTGGACGAGAACTTCATCGC
CAAGGTGTCCGACGCCGGAGTCGACCGGCTGCTCCGAGGGCTCGAGGACCCCGGCTCGCCGCTGAACGGATTCCGTTCCG
GCATCTACCAGGATCCAGAGTAAGCCTGTCTGAAA-CTCTGAACCCTGGA------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CATCATTCTGCAGTGAATGT
CTGCTGCG-TCAACTCCGCTCTTATCTGACCATCTGACCGTTACGCATGCGTCCTCAGGGCACATTCCTTGGCACAGCTC
TCTGCGAGCAGCGACGTGTACAGCTTTGGGGTTTTTCTTCTGGAGCTCATCACCGGCAGGGAGGCTGCAAGCTTGGTTTC
TCCGGAATCAACCGAACCTCTCGCTCATTGGGTAATTAT----TCAGTGATACCAATCTTCAGTATATTTGCATTTTTTT
-------AAAGTACTAGTTGTATCGAAGATTTCTTCTGACAAAAGTAGCATTAGTTGAAGTTTCATCCAAAATTAAGCTA
AATCCAACTATTACATTATATTGACGCTAGTTTCCTGCTGAATGTGGCAGCTGGAGTCGTCAGGAGACGAGGTGGCGGAC
CCGAGGCTCGGCGGCAGCTTCACCTCAGAGGGCATGAAGGAGCTAGTCGGGCTGACAATGCAGTGCCTGAGCCCGTCGGT
GGTGAGGAGGCGGCCCAAGATGCGTCTGGTCGCGGCGGAGCTCGACCGCATCCTAGAGAAGGAGATGACACTGACGACCG
TCATGGGCGACGGCACCGCCATCATCACCCTCGGGAGCCAGCTCTTCACGTCATGA------------------------
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--------------------------------------------
>chr3B_1_TraesCS3B01G501900
GGCCACCTCGTTTTCCTCAAGGTGAGAGCCGAGGTTGGCATGTGTGATGACGCGATAATGTACTTGGTACGATACCGGAT
CCTTCTCTTTTCTAAAGCAAGTATCTTCACGATCGACAAACCGAATATACATGCTGGCTGTCACGAGGCTACCCAATTTG
CACTAGTTTA---TAGAAGAGGTATCTGGAAGCAGGTAGCAAAAG-----AAGGCAACCCTGCGCCGCCG---TCATGTC
ACTCCGGCCGGCCGGCCGGCCGCCGCTAGATGCCAAGTGCACGATATAATCATGAGATCTCTATCATCATCCTTTCT---
CGCTCGGGTCTCCAGCCTATCACAGCCGGGTCAAAGAGCCCTGTGGGCGGTCCCAGGCC-----CACGTTGACAGCTAGC
CCGAAGGTCAGGACAGCCACTGA-----------GCACGACCGGGTCCCGCTCCCAGCTGCCCATGCCAGAATCGCTCGC
CCG-----GTGGAGAAGACGACGACGGCGACCCGTTCGTTCGTTTCACCTTCTTCACCGCCCTGGCCGCCGCGGTGAAAT
GCTTCCTCTCCACGTGCATGCGCGGCGCGGCATGGCGGGCGTCCAAGTTGCCATGTGC--------ATTCATTTCATATC
AGCCACCTG----------------CGTCTTCTTGGCCTGGCTCTAGTCTAGCTGCTCTGTTCCT----CCTCTGATTGC
GTACCAGCTA-------GGAGCTAGCCCAATTGCATCCATCCCTCCCGTCGTGCTCTGCTCTTTAAAACACCCAGCCCGG
CCTTCGTCTAGCTTCCGTACG---------------------------TTTCTTGGTCCGACCAGACCGCCGCTGCTCGA
CAATTCATCTATCCGGA---GCTGACCGTGCTCCGTCGCCGCATTGATGAATGCCGAAGCTATAGCGGCTCTCCGTCGTC
GCTCTTGCCAGGTTAGCGCTCAGCGCACGCACAGCACCGCCGGGCGCATCCGGGGCACGGACTCTCTGCCGGCCGGCGAC
TGATCCACTAGTTCTTGGTTTGCGTGCGCGCACTGCAGGGATGCCACGGTCGCCCGGATCATGGCATTGCCAACCGCGGT
AGTAGCCGGCGTTGCCGCGTCCGTCGCCACGCTGGTGCTGCTGGCGGTCGCCGCTGCGGTCTGTTGCTGGTGGCTAGCGG
CGCGCCGTAGCCGGACCTCCGACACCGCCTCCGACGAAACTCCTCCCACGCTGGGTAAG------TAACTGACACCAGCA
AAGTAGTAGCAATTCGCGCC---------------GCTTCATCCGCTGCAATTTTTTGCGCATTTTCCCGTAACTAACGT
TTTGTAT-GTTTGGTCCCAGCGGAGTGGGGCAGGTGCGGCCGGACGTCGTCGGCGCCGGACTACCAGGGCGCCAGGCGGT
TCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTTCAGCGACGCCAACCTCGTCGGCGCCGGCACCTTCGGGAAGGTG
TACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGTCGGCCAGCCGCGCCAGGACTTCGTCGACGA
GGTACCTACAAACATCTGAAATCTCTGCTAGCTCAGGAACCA--GTGACATCCCTGCATTTCCTCATTTCTCATTTAGTT
TCTGAAAAACTGGCTAGATTTTCGCCTCGACAAGGAAGTAATTGAACTCTCTACTTACACCCTTACACGAGACGACGGTT
CATGAATTGTCTCTGTACTTGACTGAATTCGCCTCTCACCTCATGGGGGTTTCATTG------------TGCAGGTAAGG
CGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTGCCAGGACGGGGGTCTGCAGATGCTCGTCTT
CGAGCACCTGCCCAACGGCAGCGTCTGCGGCCACCTATACGGTAAT--GCAGTTGCACAGCTCCATTCCTTGTCAGACAA
ATTCGAAGCAGCAAACAACCCAACGCTAACGCGCCGACGCTGCATCAATTTACCAGATACCGGCAAAGAGTCCATGACAA
GGCTGGAGTTCAAGCAGAGGCTCTCGATCGCCATCGGAGCAGCCAAAGGTACTGGTAACCCAGAACTTATTACACAATGC
ACTGTGTTTGTTTCA----------------------GAAACAGAGTGTCTGAACTCTGAACTTCATTGCAGGTCTGGAC
CATCTGCACAGCCTCGCGCCTCCCTTGATCCACAAGGGCTTCAAGACGAGCAACGTCCTGGTGGACGAGAACTTCATCGC
CAAGGTGTCCGACGCCGGAGTCGACCGGCTGCTCCGAGGGCTCGAGGACCCCGGCTCGCCGCTGAACGGATTCCGTTCCG
GCATCTACCAGGATCCAGAGTAAGCCTGTCTGAAA-CTCTGAACCCTGGA------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CATCATTCTGCAGTGAATGT
CTGCTGCG-TCAACTCCGCTCTTATCTGACCATCTGACCGTTACGCATGCGTCCTCAGGGCACATTCCTTGGCACAGCTC
TCTGCGAGCAGCGACGTGTACAGCTTTGGGGTTTTTCTTCTGGAGCTCATCACCGGCAGGGAGGCTGCAAGCTTGGTTTC
TCCGGAATCAACCGAACCTCTCGCTCATTGGGTAATTAT----TCAGTGATACCAATCTTCAGTATATTTGCATTTTTTT
-------AAAGTACTAGTTGTATCGAAGATTTCTTCTGACAAAAGTAGCATTAGTTGAAGTTTCATCCAAAATTAAGCTA
AATCCAACTATTACATTATATTGACGCTAGTTTCCTGCTGAATGTGGCAGCTGGAGTCGTCAGGAGACGAGGTGGCGGAC
CCGAGGCTCGGCGGCAGCTTCACCTCAGAGGGCATGAAGGAGCTAGTCGGGCTGACAATGCAGTGCCTGAGCCCGTCGGT
GGTGAGGAGGCGGCCCAAGATGCGTCTGGTCGCGGCGGAGCTCGACCGCATCCTAGAGAAGGAGATGACACTGACGACCG
TCATGGGCGACGGCACCGCCATCATCACCCTCGGGAGCCAGCTCTTCACGTCATGATCATCCAATATTTGTTGC--CACA
ATGGACATTTTTGTGTTTCGCGGCTGCTAAACTTTAGTTGCCTGAAAATGAATTGAGCATCAGTTGAATTCCCCAAACAT
CGAGCTGGAAATGAAGACGATAT------GGCGACGGAGGGGAGGCCGAGGTTTGAAGGATATGGGTGTGGGTATAGGAG
GACTTCACGAGTGCTAAGAAAATGGGGAATGATGGTTAGAGGGATGATCGGGGTGACGGCCAGCGGACCGGCATAGGAGG
CAGTTAAGGAGGGGCGGG--ACGAGGTGGCCACGCCGGTTGCAGG---------------GGTTTGGCCAATAGAGGCGG
GCGGCAAAACCATGGAAGCTGTTGTCGGCAATGGGGACGAAGGGGAAATCGACCGTTGTATGTATTTTTTCCAGGCAACT
GACATTTAGCCGGTCCATTTTGTTTTGTACATTTGCATATGAAGCAACT-----------------------------GG
TTGTGTACATTCTATATACTCGATACAAAAGTCGGGAGGTAATGAAGTT-TTTTTTCTCCCG------------------
--------------------------------------------------------------------------------
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-----------------------------------GAGAAGATAACAAAGTTCCTCTTCCATGGACTCGCAAGGCTAGTT
CCGCGGCTTGAAACATACTGTACTATAAAGTCTCCGGGCCTGAATTCCATGGAGCGGCGATTTTTTGAGCGTTGGATACG
ACGAAGACGAGGTTGCTTCAACCGTTGACAAGATCCTTCCCGTCGATGATCCAGCGAGAGTCGGGCTTCATGCGGGGGAG
ACTATGGAGATGTTGCAGCGGGTAGTTCACCGGCGAACGGCGGCGGCGGCGGTCCGGCCCTGGAAGGGTGCATTGCCTAA
GGTATGTCTCCCGAATTTGACTCTTTTTTATATGATTCGGCCGGATTGCTGGACTTTGGTGAAGAGACGAAAGAATGCCC
GCCGGAAAAGCTCTAGATCGGCGCCGGATGTGACCGCGGCGGTGTCGCTGGCGGTCACGGCGATCCAGATCGGCGACGCT
CGCCAGGAGCGTTTGAATTTGCTCGGCCGAGCCGAGCCGCGAGT
>chr3A_1
GGCCACCTCGTTTTCCTCAAGGTGTGAGCCGAGGTTGGCATGTGTGATGACGCGATTATGTACTTGGCACGATACCGGAT
CCTTCTCTTTTGTAAAGCAAGTATCTTCACGATCGACCAACCGAATATACATGCTGGCTGTCACGAGACTACCCAATTTG
CACTAGTTTA---TAGAAGAAGTATCTGGAAGCAGGCAGCTAGCAACCACAAGGCAACCCTGCGCCGCCG---TCATGCC
ACTCCGGCCGGCC-GCCGGCCGCCGCTAGATGCCAAGTGCACGATATAATCATGACATCTCTACAATCATCCTTGCTCGC
CGCTCGGGTCTCCAGCCTATGACAGCCGGGTCAAAGCGGCCTGTGGGCGGTCCCAGGCCGGCCCCACGTTGACAGCTAGC
CC-AAGGTCCCGGAAT-----------------CGCACGACCCGGTCCCGCTCCCAGCTGCCCATGGCGGAATCGCTCGC
CCGGTGCGGTGAAGAAGAAGACGACGACGACCCGTTCGTTCGTTCGTCCGTTTCA----------CCGCCGCGGTGAAAT
GCTTGCACTCCACGTGCAT-----GCGCGGCATGGCGGGCGTCCAAGTTGCCATGTGCTCATCTGCATTCATTTCATATC
GTCCACTCCACCACACCACCTGCGTCGTCTTCTTGGCCTGGCTCTAGCCTAGCTGCTCTGTTCCTCCCTCCTCTGATTGC
GCACCAGCTACCTGCTGGTAGCTGCCCCAATTGCATCCATCCCTCCCGTCCTGCTCTCCTCTTTAAAACACCCAGCCCAG
CATAGCCACCATATCTCGCAGCTTGTGGCCGCAGACTCCCTACCATTTTTGGTCGGTTCGGTCGG------GTTGCTCCA
AGAGCAGTCGCGA----------------GCTCCGTCGCCGCATTGATGAATGCCGAAGCTATAGCGGCTCTCCGTCGTC
GCTCTTCCCAGGTTAGCGCTCAGCGCACGCACT------------GCCCCCGGGACACGGACTCTCGATCGCCCGGCGAC
TGATCCCGTAGTTCTTGGTTTGCGTGCG-----TGCAGGGATGCCACGGTCGCCCGGATCATGCCATTGCCAACCGCGGT
CGTAGCCGGCGTTGCCGCCTCCGTCGCCGCGCTGGTGCTGCTGGCGGTCGCCGCCGCGCTCTGCTGGTGGCGGCTCGGGG
CGCGCCGTAGCCGGACCTCCGACACCGCCTCCGACGAAACTCCCCCCACGCTAGGTAAG------TAACTAACACCGGCG
AAGGAGCTCGTAGCAAGTCATGCCGCTGCCGGCGTGCTTCATGCGCTGCAATTG----------------------ACGT
TTTGTATGGTTTGGCCTCAGCGGAGTGGGGCAGGTGCGGCCGGACGTCGTCGGCGCCGGACTACCACGGCGCCAGGCGGT
TCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTTCAGCGACGCCAACCTCGTGGGCGCCGGCACCTTCGGCAAGGTC
TACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGTCGGCGCGCCGCGCCAGGACTTCGTCGACGA
GGTACCCGAAACCATCTG-AAACTCTGCTACTTCATGAACGG----------------------------TCACTTAGTT
TCTGAAGT----GCCAGATTTTCGTTTCAACAAGGAAGTAACTGC-CTCTGTACTGACG--------TGAGAGTTCGTGA
AATGTATTT---------TTGACTGAATTCGCCTGG-------------------------------GCTGCAGGTGAGG
CGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTGCCAGGACGGGGGTCTGCAGATGCTCGTCTT
CGAGCACCTGCCCAACGGCAGCGTCTGCGGCCATCTATACGGTAATTTGCAGTTGCACAGCTCCATTCCTTGTCAGGCCA
ATTCCAAGCAGCAAACAGCCGAACGCTAATGCGCAGACCCTACATCTATTTACCAGATACCGGCAAGGAGTCGATGACAA
GGCTGGAGTTCAAGCAGAGGCTCTCGATCGCCATCGGAGCGGCCAAAGGTGGTGGCAACACAAAACTTATTACACAATGC
ACTGTGCTTGTTTCA----------------------GAAACAGAGTGTCTGAACTCTGAACTGCAATGCAGGCCTGGAC
CATCTGCACAGCCTCGCGCCTCCGTTGATCCACAAGGGCTTCAAGACGAGCAACGTGCTGGTGGACGAGAACTTCATCGC
CAAGGTGTCCGACGCCGGAGTCGACCGGCTGCTCAGAGGGCTCGAGGACCCCGGCTCGCCGCTCAACGGATTCCGTTCCG
GCATCTACCAGGATCCAGAGTAAGCCTGTCTGAAAACTCTGAACCCTGAA------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CATCATTCTGCAGTTTATGT
CTGCTGCGATCAACCCCGCTCTTATCT--------GACCGTTACGCATGCGTCCTCAGGGCACATTCCTTGGCACAGCTC
TCTGCGAGCAGCGACGTGTACAGCTTTGGGGTTTTCCTTCTGGAGCTCATCACCGGCAGGGAGGCCGCCACCTTGGTTTC
TCCGGAATCAACCGAATCTCTCGCTCATTGGGTAATTAACTAGTCAGTGATACCAAT-TTCAGTGTATTTTCATTCCGAC
TAAAAACTAA----------TATCGAAGATTTCTTATGACAAAAGTAATATTAGTTGAAGTTTCATCCAAAATTAAGCTA
AATCCAGC---TACATTATATTGACACCAGTTTCTTACTGAATGTGTCAGTTGGAGACGTCGGGAGACGAGGTGGCGGAC
CCGAGGCTCGGCGGCAGCTTCACCTCGGAGGGCATGAAGGAGCTGGTTGGCCTGACGATGCAGTGCCTGAGCCCGTCGGC
GGTGAGGAGGCGGCCCAAGATGCGGCTGGTCGCGGCGGAGCTCGACCGCATCCTGGAGAAGGAGATGACCCTGACGACGG
TCATGGGGGATGGCACGGCCATCATCACCCTTGGGAGCCAGCTCTTCACGTCATGATCATCCAATATTTGTTACCACAAA
ATGGATATTTTTGTGTTTCGCGATTGCTAAACTTTAGTTGCCTGAAAATCAATTGAGCATCAATTGAATTCCCCTAGCAT
CGAGCTGGAAATCAAGACGACGTGACGTCTTCGACGGAGGGGAGTTCAAGGGTTGACTGATATGGGTGTGG-TAGAGGAG
GACTTCACCGGAGCAAAAAA--GGGGGAAGGATGGTTGCAGGGATGACCGGGGTGACGGCCAATGGACCGGCATAGGAGG
CGATTCAGGCAGGGCGGG--ACGATGAGGCGACATAGGCTGAAGGTGGCGGGTA-CCGGCGGTTAGGCCAATGAAGGCGG
GTGGCTCAACAATGGAAGCGTTTGTCAGCAATGGGGATGAAGGGGAAATCGACCAATGTATGTACTTTTTTCAGGCAACT
GGCATTTAGCCGGTCCATTTTGTTTTGTACATTTGCATATAAAGCAACT-----------------------------GC
GTGTGTAATTTCTCTCTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAAGATAACGAAGTTCCTCTTCCATGGACTCGCAAGGCTAATT
GCGCAGCTTGAAACATACT-------------------------------------------------------------
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--------------------------------------------
>chr3D_45
--------------------------------------------TGATGACGCGATAATGTACTTG-CACGATACCGGAT
CCTTCTCTTTTGTAAAGCAAGTATCTTCA----CGACCAACCGAATATACATGCTGGCTGTCACGAGGCTGCCCAATTTG
CACTAGTTTATACTAGAAGAAGTATCTGGAAGCAGG----TAGCAAACACAAGGCAACCCTGCGCCGCCGCCGTCATGCC
ACTCCGGCAGGCCGGCCGGCCGCCGCTAGACGCCAAGTGCACGATATAATCATGAGACCTCTATCATCATCCTT------
-GCTCGGGTCTCCAGCCTATCACAGCCGGGTCAAAGCGCCCTGTGGGCGGTCCCGGGCCGGCCCCACGTTGACAGCTTGC
CG-AAGGTCAGGACAGGCACCGGGCTGGGCCCGCGCACGACCGGGTCCCGCTCCCAGCTGCCCATGGCAGAATCGCTCGC
CCGGTGAAGAAG---AGACGACGACGGCGACCCGTTCGTTCGTTTCACC---------GCCCTGGCCGCCGCGGTGAAAT
GCTTCCTCTCCACGTGCAT-----GCGCGGCATGGCGGACGTCCAAGTTGCCATGTGC--------ATTCATTTCATATC
GCCCACCTG----------------CGTCTTCTTGGCCTGGCTCTGGCCTAGCTGCTCTGTTCGT----CCTCTGATTGC
GCACCAGCTAC----TGGTAGCTAGCCCAATTGCATCCATCCCTCCCATCGTGCTCTGCTCTTTAAAACACCCAGCCCGG
CCGTCGTCCAGCTTCCGTACG---------------------------TTCCTTGCTCCGATCGG------GCG------
--------------------GCTGACCGTGCTCCGTCGCCGCATTGATGAATGCCGAAGCTATAGCGGCTCCCCGTCGTC
GCTCTTCCCAGGTTAGCGCTCAGCGCAAGCACTGCACCGCCGGGAGCCTCCGGGGCACGGACTCTCGGCCGGCCGGCGAC
TGATCCCGTAGTTCTTGGTTTGCGTGCGC-----GCAGGGATGCCACGGTCGCCCGGATCATGGCATTGCCAACCGCGGT
CGTAGCCGGCGTTGCCGCGTCCGTCGCCCTGCTGGTGCTGCTGGCGGTCGCCGCCGCGCTCTGCTGGTGGCGGCTCGGGG
CGCGCCGTAGCCGGACCTCCGACACCGCCTCCGACGAAACTCCTCCCACGCTAGGTACTTACTACTACCTGACACTAGCA
AAAATTATCCTGCTGCGATTTGTTCTTTTTGTAATTGCCGTGCGTGATCGTGA--TGCACGA------------------
-----ATCGTTTGGTCTCAGCGGAGTGGGGCAGGTGCGGCCGGACGTCGTCGGCGCCGGACTACCAGGGCGCCAGGCGGT
TCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTTCAGCGACGCCAACCTCGTCGGCGCCGGCACCTTCGGCAAGGTC
TACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGTCGGCGCGCCACGGCAAGACTTCGTCGACGA
GGTA-----ACCCATCTG-AAACTCTGCTACTTCTTGAACG-------------------------------------TT
TCTGAACT----GCCGGATTTTCGTTTCGACAAGGAAGTAATTGC-CTCTGTACTGACG--------CGAGAGTTGGTGA
AATGTAC------------TGACTGAATTCGCCTA-------------------------------TGCTGCAGGTGAGG
CGGCAGTCGGAGATCTGGCACCGGAACGTGGTGACCCTCATCGGCTACTGCCAGGACGGGGGTCTGCAGATGCTCGTCTT
CGAGCACCTGCCCAACGGCAGCGTCTGCGGCCATCTATACGGTAATTTCCAGTTGCACAGCTCCATT-CTTGTCGCACAA
ATTCGAAGCAGCAAACAGCCGAACGCTGATGCGCAGACCCTACATCAATTTACCAGATACCGGCAAAGAGTCCATGACAC
GGCTGGAGTTCAAGCAGAGGCTCTCGATCGCCATCGGAGCGGCCAAAGGTGGTAACAGG---GAACTTATTACACAATGC
ACTCTGCTTGTTTCTGATGGCGTCCGACCAAGTGTCTGAAACAGAGTATCTGT------------AATGCAGGTCTGGAC
CATTTGCACAGCCTCGCGCCTCCACTCATCCACAAGGGCTTCAAGACGAGCAACGTCCTGGTGGATGAGAACTTCATCGC
CAAGGTGTCCGACGCCGGAGTCGACCGGCTGCTCAGAGGGCTCGAGGACCCCGCCTCGCCGCTCAACGGATTCCGTTCCA
GCATCTACCAGGATCCAGAGTAAGCCTGTCTGAAA-CTCTGAACCCCTTACATCATGGGTCTGTCTAGGACGCATCTAAC
ATGATGTCCACTATGTTTGTGGTCTGTTTTTTTTTTTGTCCCAGCTTTTTTTTTGTTCCTTGTTGCTACCTTATTTGTGG
GAGATTAGATGTGACATTTTAAAAAAAACATTTAGATGTGAATTAAACAAACTGTTACATCATTATTCTGCAGTTTATGT
CTGCTGCG-TCAACCCCGCTCTTATCT--------GACCGTCACGCATGTGTCTCCAGGGCACATTCCTTGGCACAGCTC
TCTGCGAGCAGTGACGTGTACAGCTTTGGGGTTTTTCTTCTGGAGCTCATCACCGGCAGGGAGGCCGCCAGCTTGGTTTC
TCCAGAATCAACCGAATCTCTCGCTCATTGGGTAATTAA----TCAGTGATGCTAATTTTCAGTATATTTGCAGTTTCTT
TTACAAAAAAGTACTAGTAGCATCGAAGATTTCACCTAATAAAAGTAATATTAGCTTCAGTTTCGTCCAAAATTAACCTA
AATCCAAC---TACATTATATTGACGTCAGTTTCCTACTGAATGTGTCAGCTGGAGGCGTCGGGAGACGAGGTGGCAGAC
CCGAGGCTCGGTGGCAGCTTCACCTCGGAGGGCATGAAGGAGCTGGTTGGCCTGACGATGCAGTGCCTGAGCCCGTCGGC
GGTGAGGCGGC---CCAAGATGCGGCTGGTTGCGGCGGAGCTCGACCGCATCCTAGAGAAGGAGATGACCCTGACGACCG
TCATGGGGGACGGCACCGCCATCATCACCCTCGGGAGCCAGCTCTTCACGTCATGATCATCCGATATTTGTTGC--CACG
GTCCATATTTTCTTGTTTCACGGTTGCTAAACTTTAGTTGCCTGAAAATGAATTGTGCGCCTGTCCAATTCCCCAAGCAT
CGAGCTAGAAATGAACACGACGTGGCGTCGTCGATGGAGGGGAGTACGAGGGTCGAAGGATATGGGTGTGGGTATATGAG
GACTTCACCGGTGCTAA-AAAAGGGGGAAGGATGGTTAGAGGGATGACCGGGTTGACGGCCAGCAGACCGGCATAGGAGG
CGGTTCAGGCAGGGCGGGGGACGATGAGGCGACGTCGGCTGAAGGTGGCGGGGTGCCGGCGGTTAGGCCAATGAAGGCGG
GCGGCTCGACAATGGAAGTGGTTGTCAACAATGAGGACAAAGGGAAAATCGACCAATGTATGTACTTTTTTCAGGCACCT
GGAATTTAGCCGGTCCATTTTGTTTTGTACATTTGCATATAAAGCAACTTCCTATGTAATTTGTCTTTTTCTGTGGGGGG
TTGTGTACAATCTCTATACTTCATAGAAAAATCGGGAGATGAGAAGTTTCTTTTTTCTCCCG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGGAAGATAACGAAGTTCCTCTTCCATGGACTCGCAAGGCTAGTT
GCATGGCTTGAAACATACTATC-----AAGTCTCCAGGCTTGAATTC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>chrUn_617
GCCTGGCT------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTCTAGCTGCTCTGTTCCT----CCTCTGATTGC
GCACCAGCTA-------GTAGCTACCCCAATTGCATCCATCCCTGCCATCGTGCTCTGCTCTTTAAAACACCCAGCCCAG
CCATCGTCTAGATTCGGTGCG---------------------------TTTCTTGGTTCGATCTG------GCTGCTCGA
CGAGTGATCCGTCCGGAGCTGCTGACCGAGCGACGTCGCCGCATTGATGAATGCCGAAGCTATAGCGGCCCTCCGTCGTC
GCTCTTCCTTGGTCAGCAGCTTACCACTC----GCACCGCCGCG------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCTCTGCTGGTGGCGGCTCAGAG
CGCGCCGTAGCCGGACCTCCGACAGCGCCTCCGACGAAACTCCTCCCACGCTAGGTACG------TACGTGACACTAGCA
GCTTCTATGTCCTGCCGCAAG----------------TTCATCCGGTGACCGTCGTGCACGA------------------
-----ATGGTTTGGTCTCAGCGGAGTGGGGCAAGTGTGGCCGCACGTCATCGGCGCCGGACTACCAGGGCGCCAGGCGGT
TCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTAAAGCGATGCCAACCTCGTCGGCGCCGGCACCTTCGGCAAGGTC
TACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGTCGGCGCGCCGCGCCAAGACTTCGTCGACGA
GGTAAGGAAACCCATCTG-AAACTCTGAATATCTGCTAGTTCGTGTGACAGCGCTGCATTTTGCCA-TTCTCATTTAGTT
TCTGAAAACCTCGCTGGATTTTCGTTTCGAC----AAGTAATTGC-CTCTGTACTTACTA-CTTACTCGAGAGTTGATGA
ACTTGC-----------CTTGACTGAATTCAACTCTCGCTTCATGGGGTCCCTTGTGCAATGTTGCTGCTGCAGGTGAGG
AGGCAGTCGGAGATCTGGCACCGGAACATGGTGACCCTCATCGGCTACTGCCAGGACGGGGGTCTGCAGATGCTCGTCTT
CGAGCACCTGCCCAACGGCAGCGTC-------------------------------------------------------
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--------------------------------------------
>chr1B_617
GCCTGGCT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTCTAGCTGCTCTGTTCCT----CCTCTGATTGC
GCACCAGCTA-------GTAGCTACCCCAATTGCATCCATCCCTGCCATCGTGCTCTGCTCTTTAAAACACCCAGCCCAG
CCATCGTCTAGATTCGGTGCG---------------------------TTTCTTGGTCCGATCTG------GCTGCTCGA
CGAGTGATCCGTCCGGAGCTGCTGACCGAGCGACGTCGCCGCATTGATGAATGCCGAAGCTATAGCGGCCCTCCGTCGTC
GCTCTTCCTTGGTCAGCAGCTTACCACTC----GCACCGCCGCG------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCTCTGCTGGTGGCGGCTCAGAG
CGCGCCGTAGCCGGACCTCCGACAGCGCCTCCGACGAAACTCCTCCCACGCTAGGTACG------TACGTGACACTAGCA
GCTTCTATGTCCTGCCGCAAG----------------TTCATCCGGTGACCGTCGTGCACGA------------------
-----ATGGTTTGGTCTCAGTGGAGTGGGGCAGGTGTGGCCGCACGTCATCGGCGCCGGACTACCAGGGCGCCAGGCGGT
TCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTAAAGCGATGCCAACCTCGTCGGCGCCGGCACCTTCGGCAAGGTC
TACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGTCGGCGCGCCGCGCCAAGACTTCGTCGACGA
GGTAAGGAAACCCATCTG-AAACTCTGAATATCTGCTAGTTCGTGTGACAGCGCTGCATTTTGCCA-TTCTCATTTAGTT
TCTGAAAACCTCGCTGGATTTTCGTTTCGAC----AAGTAATTGC-CTCTGTACTTACTA-CTTACTCGAGAGTTGATGA
ACTTGC-----------CTTGACTGAATTCAACTCTCGCTTCATGGGGTCCCTTGTGCAATGTTGCTGCTGCAGGTGAGG
AGGCAGTCGGAGATCTGGCACCGGAACATGGTGACCCTCATCGGCTACTGCCAGGACGGGGGTCTGCAGATGCTCGTCTT
CGAGCACCTGCCCAACGGCAGCGTC-------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------
>chr1B_617
GCCTGGCT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTCTAGCTGCTCTGTTCCT----CCTCTGATTGC
GCACCAGCTA-------GTAGCTACCCCAATTGCATCCATCCCTGCCATCGTGCTCTGCTCTTTAAAACACCCAGCCCAG
CCATCGTCTAGATTCGGTGCG---------------------------TTTCTTGGTTCGATCTG------GCTGCTCGA
CGAGTGATCCGTCCGGAGCTGCTGACCGAGCGACGTCGCCGCATTGATGAATGCCGAAGCTATAGCGGCCCTCCGTCGTC
GCTCTTCCTTGGTCAGCAGCTTACCACTC----GCACCGCCGCG------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCTCTGCTGGTGGCGGCTCAGAG
CGCGCCGTAGCCGGACCTCCGACAGCGCCTCCGACGAAACTCCTCCCACGCTAGGTACG------TACGTGACACTAGCA
GCTTCTATGTCCTGCCGCAAG----------------TTCATCCGGTGACCGTCGTGCACGA------------------
-----ATGGTTTGGTCTCAGCGGAGTGGGGCAAGTGTGGCCGCACGTCATCGGCGCCGGACTACCAGGGCGCCAGGCGGT
TCACGCTGGAGGAGATGTCCCACGCCACCAAGAACTAAAGCGATGCCAACCTCGTCGGCGCCGGCACCTTCGGCAAGGTC
TACATGGGCCTCCTGCTCGACGGCACCGTCGTCGCCATCAAGCGCCGCGTCGGCGCGCCGCGCCAAGACTTCGTCGACGA
GGTAAGGAAACCCATCTG-AAACTCTGAATATCTGCTAGTTCGTGTGACAGCGCTGCATTTTGCCA-TTCTCATTTAGTT
TCTGAAAACCTCGCTGGATTTTCGTTTCGAC----AAGTAATTGC-CTCTGTACTTACTA-CTTACTCGAGAGTTGATGA
ACTTGC-----------CTTGACTGAATTCAACTCTCGCTTCATGGGGTCCCTTGTGCAATGTTGCTGCTGCAGGTGAGG
AGGCAGTCGGAGATCTGGCACCGGAACATGGTGACCCTCATCGGCTACTGCCAGGACGGGGGTCTGCAGATGCTCGTCTT
CGAGCACCTGCCCAACGGCAGCGTC-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------
>SNPs
------------------------S------------------------------------------S------------
-----------S-------------------------S------------------------------------------
--------------------S---------------S---S-SSS---------------------------------S-
--------------------------------------------------------------------------S-----
------------------------------------S-------------------------------------------
--S-------------S---S-S-------------------------------------------S-------------
-------------------------------------------------S-S-SSSSS----------------------
-------------------SSSSS--------------------------------------------------------
SS------------------------------------------------------------------------------
-S----------------S-------------------------------------------------------------
-------------------------------------------------------------S-S-SSSSSS---------
-S-S-S---SS---------------------------------------------------------------------
------S-------------------------S-----------S--S------------------S-------------
------SS---------------------SSSS-----------------------------------------------
S---------------------------S-------------------------S---S----S--S---S----S-S--
----------------------------------------------------S---------------------------
------SS--S----SSS-S---------------------------------SS-SSSSS-SSSSSSSSSSSSSS----
----------------S---------------------------------------------------------------
-------------------------------------------------------------------------S-----S
------------------------------------------------------SS------------------------
------S-S--S------S--S--------SS---S----SS--------S-S--------SSS--S-------------
--------S--S------------SS------------------SS----S-------SSS-----S-----SSS--SSS
S---S---SSSSSSSSS--------------------S-S--------SSSSSSS---------------------S---
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
-----------------S--S--------S----S---S--S--------------------------------------
----------------------------------------S---------SS---S---S--------------------
------S--------------------------------------------------------S--S-------------
-----------------------S--------------------------------------------------------
----------------------------------S----------------------------S----------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------SS----
--------------S------------SSSSSSSS---------------------------------------------
-----------------------------------------------------------------S--S-----------
----------------S---------------------S------------------S-------------------S--
------------------S----------------------------SS-------------------------------
--------SSS----------------S--------S---------S---------S----S------------------
--------------------------S-----------------S--S--S-----S----------------------S
------------------------S--------------------------------------------S----------
-------S------------------------------------------------------------------------
-----S-----------------S----------------------------------------------------S---
--------------------SS--------S-------------SS-----S----------------------------
--------SS-------S----S------S-----------------S--------------------------------
-S---S---SS-------------S-S---S---S---S--S----------------------S-------SS------
-----SS---S--------S------S---------------------------SS--------S-----S---------
-S--------------------------------------S---------------------------------------
-------------S------SS---S----S-------S-S-SS-SS---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
S------------------S-SSSSSS--------S---S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_423
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---AAGGTCAGGACAGCCACTGA---------------------------------------------------------
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--------------------------------------------
>reverse_1514
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GAAGGTG
TACATGGGCCTCC-------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>forward_1334
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CGCTTCATCCGCTGCAATTT--------------------------
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--------------------------------------------
>reverse_2668
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GACCATCTGACCGTTACGCA---------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>forward_2136
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GAGCAGCCAAAGGTACTGGT------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>reverse_4275
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------CCTTCCCGTCGATGATCCAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
