>input_sequence_41196
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-------ATGGCAAATCATTATGCTCCTCTGAGGGTTATTCTTGTACTGCTGTTGGTCTTCACTTGTTTCGCCTCTGAAG
CTGATATCCAATGCCTGAAATCTGTTCAGCAGTCAGTG---GACCCCAACGGTGTACTCAAATCCTCATGGAATTTTGAG
AACGACACTGCTGGTTTCACATGCCGATTTACTGGCGTGGAATGTTGGCACCCGGATGAGGACCGAGTTCTTTCTTTGCG
CCTAGGCAACCTTGGTCTCCAGGGTTCATTTCCTCATGGTCTTCAGAATTGCAGCAGTATGACTGGGCTGGATCTGTCAA
ACAACAACTTTTCAGGACCTATCCCTCAAGACATCTCCCGGGAAATACCATACCTAACATCATTGGACCTCTCCTACAAT
GGTTTTTCTGGCACCATCCCACCAAATATATCAAACATGACTTACCTGAACGTCCTCAATCTCCAACATAACCAGTTTAG
TGGCGAAATTCCACCGCAGTTCAGTCTTCTGACTCGGTTAACTGCATTCAATGTCGCAGAGAACCGACTATCAGGGTTTA
TTCCATATTCATTAGGAAAAAAATTTACGGCATCGAATTTTGCCGGTAATCAAGGGCTATGTGGGGTTCCATTAGATGAA
TGCCAAGCTTCAGCAAAGAGCAAGAACAACGCGGCCATCGTTGGAGCTATTGTTGGCGTCGTAGTTGTGATCATAATTGT
TGCAATAGTTGTGTTTGTTTGTCTGCGGAAATTACCAGCCAAGAAAGCAAAAAAGGATGAGGATGAAAATAAGTGGGCAA
AGAGTATCAAAGGAACAAAAACAATCAAGGTAAACTACTTTGTTGTTTCCTTTTCTTTTAATTTTGGGTCGAAAGGCAAT
GTCCAAAACAATAACTTACTGTTGTCATGGTTTTGTCAATTATCCAGGTGTCTATGTTTGAGAATCCAGTTTCAAAGATG
AAGCTAAGTGATCTTATGAAGGCCACCAAACAGTTCAGCAAGGAAAACATCATAGCTACTGGAAGGACAGGGACTATGTA
CAGGGCAGTGCTACCTGATGGTTCTTTTCTTGCTGTTAAAAGGCTACAAGATTCACAACATTCTGAATCACAGTTCACTT
CAGAAATGAAGACACTTGGCCAAGTAAGGAATCGCAACTTGGTTCCTCTTCTTGGATTTTGCATTGCTAAGAAGGAGAAG
TTGTTGGTGTACAAGCACACACCCAAAGGTTCACTCTATGATCAGTTACACGAAGAGGGGAATGATTGTAAGATGGATTG
GCCTCTGAGGTTAAGAATTGGTATTGGTGCAGCAAAAGGTCTTGCATATCTTCACCACACTTGCAATCCTCGAATCCTTC
ACCGCAATATAAGCTCCAAATGCATTCTCTTGGATGACGACTACGAACCAAAGATTTCGGATTTTGGGCTTGCTAGGCTT
ATGAACCCCCTAGACACCCATCTCAGCACCTTTGTCAATGGGGAATTTGGAGATATCGGTTATGTGGCACCAGAGTACGG
GAGCACTCTGGTGGCCACGCCGAAGGGTGACGTCTACAGCTTCGGAGTGGTTCTCCTTGAGCTTATCACCGGTGAGAGGC
CTACTCAGGTTTCCACTGCTCCAGATAACTTCAGGGGGAATCTAGTAGAGTGGATCACCTACCTATCCAACAATTCCATT
CTCCAAGACTCAATCGACAAGTCGTTGATAGGGAAGGACAATGACAGTGAGCTGATGCAGTTCCTGAAAGTCGCGTGTTC
TTGCACAGTCACCACCGCGAAGGAGAGACCCACCATGTTTGAGGTTTATCAGCTGCTTAGAGCCATTGGGGAGAAGTATC
ATTTCTCGGCCGGGGACGACATGATGCTGCCACCTCTAAGCACAGATGGAGAAACCCCGGACGAGCTCATTGTCGCCATG
TAA-----------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G259400
TCCCACCTCCGGT----CCTCCCTCCTCCCCCCACTACTCACAGACTCTTCTCCCCTCCTCCTCCTCCTCCCTGGGTCCT
CCCGGTTCCCACCTATGCACGGACGGCGAGCTTCAGGTAATCGATTCGGCCTCGCCTCTTCTCTTATTTTTCTGGATTTT
GTAGATGTTCCTTCATGCTCTGCTGTGGCGCGAATGATCTTTCGGAGTGCGCGAGCTCTGGGTTGGTTGGTGCCGCTGTG
GATGCGGGTTCTTGGGGGGC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TACGGTAGCGGTTCGCAGAGTTGCCATGTCCATGTACGGCGA
GG-------------------------------AAGAAATCGCTTGTTT-TTGGCCTGATTGGTGCGGGTTTGTTGCTGG
GGAAGCAGCAGCAA------------------------------------------------------------CAGCCC
CCGGGAGGGAAATCAGGGAA-AAAATAGCATACACATATGCGACATATGGATGGTGCGGCGCCATTCCTTTTGGAGATTT
TTCTTTGCTGCCCCTTAGATTTTCTTCTTTCTGGAAAGTGCGCCTTTTGGCAGTTCGAGCCGTTCGCTTCTGTTGTGAGA
AATCGAGATATTTATAATAAGAAAAAGCCCGCTGGTTGTTTCTATCTATAAATAATAACTGTGGTCTCGATTGATGGTTC
AGCAGTCAGGAACTGCCTCCGGTTGCAAGTTTCCACTTATGTTTACAGACAAGTAATGGAAGAA--------CAAGTTTT
TACTGTTATTG---TTAGGGGTGATGATTAATTACCATGCGACCAATTGCACTTATTCCTTCGTGCTAATCGTAGCCGAA
CCTTGGCATCATATGTTATTTGCTATGGCTGTAGTGGGGATCAGTTCCCCATTGATGTTGTCCTTGTGTTATGCTTTTCA
GTACTGCAATCAAATCAATATTTTCGTTTTAGAATATATGGCTGCTATCACCAACTC-TATGTGTGTCTCTAATTTTATA
AATTCGATTACGTTTACGTGTAGGTGAAGCTTGAACCTACAAGTGGTATTGTCACGGAGGAGAGGCCACGTTAGGCGCAA
GTGCTCGATGGCAAATCATTATGCTCCTCTGAGGGTTATTCTTGTACTGCTGTTGGTCTTCACTTGTTTCGCCTCTGAAG
CTGATATCCAATGCCTGAAATCTGTTCAGCAGTCAGTG---GACCCCAACGGTGTACTCAAATCCTCATGGAATTTTGAG
AACGACACTGCTGGTTTCACATGCCGATTTACTGGCGTGGAATGTTGGCACCCGGATGAGGACCGAGTTCTTTCTTTGCG
CCTAGGCAACCTTGGTCTCCAGGGTTCATTTCCTCATGGTCTTCAGAATTGCAGCAGTATGACTGGGCTGGATCTGTCAA
ACAACAACTTTTCAGGACCTATCCCTCAAGACATCTCCCGGGAAATACCATACCTAACATCATTGGACCTCTCCTACAAT
GGTTTTTCTGGCACCATCCCACCAAATATATCAAACATGACTTACCTGAACGTCCTCAATCTCCAACATAACCAGTTTAG
TGGCGAAATTCCACCGCAGTTCAGTCTTCTGACTCGGTTAACTGCATTCAATGTCGCAGAGAACCGACTATCAGGGTTTA
TTCCATATTCATTAGGAAAAAAATTTACGGCATCGAATTTTGCCGGTAATCAAGGGCTATGTGGGGTTCCATTAGATGAA
TGCCAAGCTTCAGCAAAGAGCAAGAACAACGCGGCCATCGTTGGAGCTATTGTTGGCGTCGTAGTTGTGATCATAATTGT
TGCAATAGTTGTGTTTGTTTGTCTGCGGAAATTACCAGCCAAGAAAGCAAAAAAGGATGAGGATGAAAATAAGTGGGCAA
AGAGTATCAAAGGAACAAAAACAATCAAGGTAAACTACTTTGTTGTTTCCTTTTCTTTTAATTTTGGGTCGAAAGGCAAT
GTCCAAAACAATAACTTACTGTTGTCATGGTTTTGTCAATTATCCAGGTGTCTATGTTTGAGAATCCAGTTTCAAAGATG
AAGCTAAGTGATCTTATGAAGGCCACCAAACAGTTCAGCAAGGAAAACATCATAGCTACTGGAAGGACAGGGACTATGTA
CAGGGCAGTGCTACCTGATGGTTCTTTTCTTGCTGTTAAAAGGCTACAAGATTCACAACATTCTGAATCACAGTTCACTT
CAGAAATGAAGACACTTGGCCAAGTAAGGAATCGCAACTTGGTTCCTCTTCTTGGATTTTGCATTGCTAAGAAGGAGAAG
TTGTTGGTGTACAAGCACACACCCAAAGGTTCACTCTATGATCAGTTACACGAAGAGGGGAATGATTGTAAGATGGATTG
GCCTCTGAGGTTAAGAATTGGTATTGGTGCAGCAAAAGGTCTTGCATATCTTCACCACACTTGCAATCCTCGAATCCTTC
ACCGCAATATAAGCTCCAAATGCATTCTCTTGGATGACGACTACGAACCAAAGATTTCGGATTTTGGGCTTGCTAGGCTT
ATGAACCCCCTAGACACCCATCTCAGCACCTTTGTCAATGGGGAATTTGGAGATATCGGTTATGTGGCACCAGAGTACGG
GAGCACTCTGGTGGCCACGCCGAAGGGTGACGTCTACAGCTTCGGAGTGGTTCTCCTTGAGCTTATCACCGGTGAGAGGC
CTACTCAGGTTTCCACTGCTCCAGATAACTTCAGGGGGAATCTAGTAGAGTGGATCACCTACCTATCCAACAATTCCATT
CTCCAAGACTCAATCGACAAGTCGTTGATAGGGAAGGACAATGACAGTGAGCTGATGCAGTTCCTGAAAGTCGCGTGTTC
TTGCACAGTCACCACCGCGAAGGAGAGACCCACCATGTTTGAGGTTTATCAGCTGCTTAGAGCCATTGGGGAGAAGTATC
ATTTCTCGGCCGGGGACGACATGATGCTGCCACCTCTAAGCACAGATGGAGAAACCCCGGACGAGCTCATTGTCGCCATG
TAATCACAAATTCATATGTTGCAGAAGGCAAGTATGACCGCAAGCAAGGCGTGTTCCCTGTATGGTCTTTAATATTTTGT
CCATGAGCATTATTACGACGCTTCAAGTGGAGTAGCGGTACGCTGCATACAATGTATATATAGTTCTTGTAGCTTGGTTC
TCTTATCCACCATTGGAAGGTGGTGCTAGTAGCAGCGAGGATAATTTTCATACTACCTATTTAAGAATGGAGTACCTGTT
AGTTAGCTAGCTCTTGAGTTACTGTGTGATTATGCCATATTGGGATT-GCGCCCTGGGGTGAACACCCATTATCTGGCCT
TCTGGATTTGGCAAAGGCGGCGCTTTCCTGTTGGCGTTGTCTTTGATTTTTCGAGTACCTTTTTTTGCAGTGCATGTGTT
GCCAAGGATGATTGTTAATGTTGATGCGTGCAGCGTGCACTTGGGTGTCATGTTACAATGTTCTC---------------
-----------------------------------------------------------TTGTCCTTTATTGAGAAAAAA
ATTATAAGACGCGAATGTCTGAAACTGTACCTTGTGGTGCTCCCTTCGTTCAGAAAAATGGACGTCTGACCATGCGTGCA
CTGATCCAAAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATCCTGACGTAGGTGTCGTGTGCTGAAACATGTCTCAGACTAGAGC
AAAAAATAAAAAATCCTGATGATAAATTACATGTGCTGTATGCGTTGTGGACTGAAATCTGACCAACCTTTTGTTATTTA
CTGCAATCAATGTAAAGGGGAGACAATTCGAAGCAACAAAAATAAGTGGTTGTTCTGACATGCACATGCAGGTGAAATGC
ACCCGGCTAAAAACAGAAAGTGTCAACCTGACGGAAGGACCTGCGGGCATGCTCATTGATCCTCGATATTTTTGCTGCTG
CCTCGGGTCTTCGCGTCAACCTGACGAAGAGCGCGGCGCTGCCGATCAGATGCTCGCAAGCTCAGATGGATATGGTCACT
AACATCCTTCGCTGCTCCATTGGGCGGTTCCCGATCAAGTATCTAGGCCTCCCGTTGACCA
>chr1A_2
-CCCACCTCCGGTCCTCCCTCCCTCCTCTCCCCACTACTCACAGACTCTTCTCTCC----CCTCCCCCTCCCTGGGTCCT
CCCGGTTCCCACCTATGCGCGGACGGCGAGCTTCAGGTAATCGATTCGACGTCGCCTCTTCTCTCA--------GATTTC
CTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACAGTAGCGGTTCGCGGAGTTGCCATGTCCATGTACGGCGA
GGGAGTTCGTCTTCCGGCTAGAAATTCCGGGGGAAGAAATCGCTGCC-TCTTGGCCTGATTGGTGGGGGTTTGTTGCTGG
GGAAGCAGCA---GCAGCAAGGGGTTTGTCCGTCCGGTGGTTCTTCATTTTTAGTTAAAAAAATCCAAGAGGGCCGGCCC
CCGGGAGGGAAATCAGGGAGAAAAATAGCATACACACATGCGACATATGGATGGTGCGGCGCCATCCCTTTTGGAGATTT
TTCTTTGCTGCCCCTTAGATTTCCTTCTTTCTGGGAAGTGCGCCTTTTGGCGGTTCGAGCCGTTCGCTTCTGTTGCGAGA
AATTC-GAGATATTTAATAAGAAAAACCTCGTTGGTTGTTC----CTATAAATAATAATTGTGGTCTCGATTGGTGGTTC
TTGGGTCAGGAACTGCCTCCGGCTGCAAGTTTCCACTTATGTTCATATAGA--TAATGGAAGAACAGGGTTGCAAGTTTT
TACTGTTATTATTATTAGGGGGGATGATTAATTACCATGCGACCGGTTGCACTTATTCTTTGGTGCTAATCGTAGCCGAA
CCTTCGCATCATATGTTATGTGCTATGGCTGTAGTGGGGATCAGTTCCCCACTGATGCCGTCCTTGTGTTATGCTTTTCA
GTATTACAATCAAATCAATATTTTCGTTTTGGAATATGT--CTGTTATCACCAACTGGTATGTGTTTCTCTAATTTTATA
AATTCGATTCTGTTTACGTGTAGGTGAAGCTTGAATCTACAAGTGGTATTGTCACGGACGAGAGGTGACGTTAGGCGCAA
GTGCTCGATGGCAAATCATTATGCTCCTCTCAGGGTTATTCTTCTACTGTTGTTGGTCTTCCCTTGTTTCGCCTCTGAAG
CTGATATCCAGTGCTTGAGATCTGTTCAGCAGTCAGTGATTGACCCCAACGGTGTACTCAAGTCCTCATGGAATTTTGAC
AACGGCACTGCTGGTTTCACATGCCGATTTACCGGCGTGGAATGTTGGCACCCGGATGAGGACCGAGTTCTTTCTTTGCG
CCTAGGCAACCTCGGTCTCCAGGGTTCATTTCCTCGCGGTCTTCAGAATTGTAGCAGTATGACTGGGCTGGATCTGTCAA
ACAACAACTTTTCAGGACCTATCCCTCAAGACATCTCCCGAGAAATACCATACTTAACATCATTGGACCTCTCCTACAAT
GGTTTTTCTGGCACCATCCCACCAAATATATCAAACATGACTTACCTGAACGTCCTCAATCTCCAACATAACCAGTTTAG
TGGCGAAATTCCACCGCAGTTCAGTCTTCTGACTCGGTTAACTGCATTCAATGTCGCAGAGAACCGACTATCAGGGTTTA
TTCCATATTCATTAGGAAAAAATTTCACGGCATCGAATTTTGCCGGTAATCAAGGGCTATGTGGGGCTCCATTAGATGAA
TGCCAGGCTTCAGCAAAGAGCAAGAACAATGCGGCAATCGTTGGAGCTATTGTTGGCGTCGTAGTTGTGATCATAATTGT
TGCAATAGTTGTGTTCGTTTGTCTGCGGAAATTACCAGCCAAGAAAGCAAAAAAGGATGAGGATGAAAATAAGTGGGCAA
AGAGTATCAAAGGAACAAAAACAATCAAGGTAAACTACTTTGTTGTTTCCTTTTCTTTT-ATTTTGGATCGAAAGGCAAT
GTGCAAAACAATAACTTACTGTTGTCATGGTTTTGTCAATTATCCAGGTGTCTATGTTTGAGAATCCAGTTTCAAAGATG
AAACTAAGTGATCTTATGAAGGCCACCAAACAGTTCAGCAAGGAAAACATCATAGCTACTGGAAGGACAGGGACTATGTA
CAGGGCAGTGCTACCTGATGGTTCTTTTCTTGCTGTCAAAAGGCTACAAGATTCACAACATTCTGAATCACAGTTCACTT
CAGAAATGAAGACACTTGGCCAAGTAAGGAATCGCAACTTGGTTCCTCTACTTGGATTTTGCATTGCTAAGAAGGAGAAG
TTGTTGGTGTACAAGCACACACCCAAAGGATCACTCTATGATCAGTTACATGAAGAGGGGAAAGATTGCAAGATGGATTG
GCCTCTGAGGTTAAGAATTGGTATTGGTGCAGCAAAAGGTCTTGCATATCTTCACCACACTTGCAATCCTCGAATCCTTC
ACCGCAATATAAGCTCCAAATGCATCCTCTTGGATGACGACTATGAACCAAAGATTTCAGATTTTGGGCTTGCTAGGCTT
ATGAACCCCCTAGACACCCATCTCAGTACCTTTGTCAACGGGGAATTTGGAGATATTGGTTATGTGGCACCAGAGTATGG
GAGCACGCTGGTGGCCACACCGAAGGGTGACGTCTACAGCTTCGGAGTGGTTCTCCTCGAGCTTATCACCGGTGAGAGGC
CTACTCAGGTTTCCACTGCTCCAGATAACTTCAGGGGGAATCTAGTAGAGTGGATCACCTACCTATCCAACAATTCCATT
CTCCAAGACTCAATCGACAAGTCGTTGATAGGGAAGGACAATGACAGTGAGCTGATGCAGTTCCTGAAAGTCGCATGTTC
TTGCACAGTCACCACCGCGAAGGAGAGACCCACCATGTTTGAGGTTTATCAGCTGCTTAGAGCCATTGGGGAGAAGTATC
ATTTCTCGGCCGGGGACGACATGATGCTGCCACCTCTAAGCACAGATGGAGAAACCCCGGACGAGCTCATTGTCGCCATG
TAATCACAAATTCTTATGTTGCAGATGGCAAGTATGACTGCCCGCAAGGCGTTTCCCCTGTATGGTCTTTAATATTTTTT
CCATGAGCATTATTACCATGCTTCAAGTGGAGTAGCGGTACGCTGCATACGATGTATATATAGTTCTTGTAGCTTGGTTC
CCTTATCCACCATTGGAAGGTGGTGCTAGTAGCAGCGAGGATAATTTTCATACTACCTGTTTAAGAATGGAGTGCCTGTT
AGTTAGCTAACTCTTGAGTTACTATGTGATTATGCCATAATGGGATT-GCACTCTGGGGTGAACACCCGTTATCTGGCCT
TCTGGATTTGGCGAAGGCGGCGCATTCCTGAAGGCGTTGTCTTCGACTTTTTGAGTGCCTTTTTTTGTAGTGCATGTGTT
GCCAAGGATG----------------------------------------------------------------------
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>chr1B_4
---CACCTCCGGTCCTCCCTCCTCT-----CCCCCCACTCACAGACTCTTCTCCCCTCCTCCTCCTCCTCCCTGGGTCCT
CCCGGTTCCCACCTATGCGAGGACGGCGAGCTTCAGGTAATCGATTCGACCTCGCCTCTTCTCTCA--------GATTTT
GTACATGTTCTTCCATGCTTTGCTGTGGCGCGAATGATC-TTGGGAGTGCTCGAGCTCTGGGTTGGTTGGTGCCGCCGTG
GATGCGGGTTCTTGGGGGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TACAGTAGCGGTTCGCAGAGTTGCCATGCCCATGTGCGGCGA
GG-------------------------------AAGAAATCGCTTGTTTCTTGGCCTGATTGGTGCGGGTTTGTTGCTGG
GGCAGCAGCAGCAGCAGCAAGGGGTTTGTCCGTCCAGTGG-TCTTCATTTTTAGTTAAAAAAATCCAAGAGGGCCAGCCC
CTGGGAGGGAAATCAGGGAGGAAAATAGCATACACATATGCGACATATGGATGGTGCGGCGCCATTCCTTTTGGAGATTT
TTCTTTGCTGGCCCTTAGATTTTCTTCTTTCTGGAAAGTGCGCCTTTTGGCAGTTCGAGCCGTTCGCTTCTGTTGCGAGA
AATCGAGATAT--TTAATAAGAAAAACCTCGTTGGCTGTTC----CTATAAATTATAATTGTGGTCTCGATTGATGGTTC
AGCAGTCAGGAACTGCCTCCGGTTGCA-----------------------------------------------AGTTTT
TACTGTTATTG---GTAGGGGTGGTGATTAATCACCAA---ACCAATTGCACTTATTCTTTGGTGCTAATCTTAGCAGAA
CCTTCGCATCATATGTTATTTGCTATGGCTGTAGTGGGGATCAGTTCCCCACTGATGTTGTCCTTGTGTTATGCTTTTCA
GTATTGCAATCAAATCAATATTTTCGTTTTAGAATATATGGTTGTTATCACCAACTGGTATGTGTTTCTCTAATTTTATA
AATTTGATTCTGTTTACGTACAGGTGAAGCTTGAATCTAGAAGT-----TGTCAAGAACGAGAGGTGACGTTAGGCGCAA
GTGCTCGATGGCAAATCATTATGCTCCTCTGAGGGTTATTCTTCTACTGTTGCTGGTCTTCCCTTGTTTCGCATCTCAAG
CTGACATCGAATGCTTGAAATCTGTTCAGCAGTCAGTGAGTGACCCCAACGGTGTACTCAAATCCTCATGGAATTTTGGG
AACAACACTGATGGCTACATATGCCGATTTACCGGCGTGGAGTGTTGGCACCCAGATGAGAACCGAGTTCTTTCTTTGCG
CCTAGGCAACCTTGGTCTCCAGGGTTCATTTCCTCGTGGTCTTCAGAATTGTAGCAGTATGACAGCGCTGGATCTGTCAA
ACAACAACTTTTCAGGATCAATCCCTCAAGAGATCTCCCGGGAAATACCATACTTGACATCATTGGACCTCTCCTACAAT
GCTTTTTCTGGCGCCATCCCACAAAATATATCAAATATGACATACCTGAACCTCCTCAATCTCCAACATAACCAGTTTAG
TGGCCAAATTCCAGCACAGTTTCAACTTCTTAGTCGATTAGCTACATTCAATGTTGCAGAGAACCAACTATCAGGGCCTA
TTCCATTTTCATTAGCACAAAAGTTTGGGCCACCGAATTTTGCCGGTAATCAAGGGCTATGTGGGGCTCCATTAGATGAA
TGTCAGGCTTCAGCAAAGAGCAAGAACAACGCGGCAATAATTGGAGCCATTGTTGGCGTCGTAGTTGTGATCATAATTGT
TGCAATAGTTGTGTTCGTTTGTCTGCGGAAATTACCAGCCAAGAAAGCAAAAAAGGATGAGGATGAAAATAAGTGGGCAA
AGAGCATCAAAGGAACAAAAACAATCAAGGTAAACTACTTTGCTGTTTCCTTTTCTTTT-ATTTTGGGTCGAAAGGCAAT
GTCCAAAACAATAACTTACTTTTGTCATGGTTTTGTCAATTATCCAGGTGTCTATGTTCGAGAATCCAGTTTCAAAGATG
AAACTAAGTGATCTTATGAAGGCCACCAAACAGTTCAGCAAGGAAAACATCATAGCTACTGGAAGGACAGGAACTATGTA
CAGGGCAGTGCTACCTGATGGTTCTTTTCTTGCTGTCAAAAGGCTACAAGATTCACAACATTCTGAAACACAGTTCACTT
CAGAAATGAAGACACTTGGCCAAGTAAGGAATCGCAACTTGGTTCCTCTTCTTGGATTTTGCATTGCTAAGAGGGAGAAG
TTGTTGGTGTACAAGTACACACCCAAAGGTTCACTCTATGATCAGTTACACGAAGAGGGGAAAGATTGCAAGATGGATTG
GCCTCTGAGGTTAAGAATTGGTATTGGTGCAGCGAAAGGTCTTGCGTATCTTCACCACACTTGCAATCCTCGAATCCTTC
ACCGCAATATAAGCTCCAAATGCATCCTCTTGGATGACGACTACGAACCAAAGATTTCGGATTTTGGGCTTGCTAGGCTT
ATGAACCCCCTAGACACCCATCTCAGCACCTTTGTGAACGGAGAGTTTGGAGATATTGGTTATGTGGCACCAGAGTATGG
GAGCACGCTGGTGGCCACGCCGAAGGGTGACGTCTACAGCTTCGGAGTGGTTCTGCTTGAGCTTATCACCGGTGAGAGGC
CTACCCAGGTTTCCACAGCTCCAGATAACTTCAGGGGGAATCTAGTAGAGTGGATCACCTACCTATCCAACAATGCCATT
CTCCAAGACTCAATCGACAAGTCATTGATAGGGAAGGACAATGACAGTGAGCTGATGCAGTTCCTGAAAGTTGCGTGTTC
TTGCACAGTCACCACGGCGAAGGAGAGACCCACCATGTTTGAGGTTTATCAGCTGCTTAGAGCCATTGGGGAGAAGTATC
ATTTCTCGGCCGGGGACGACATGATGCTGCCACCTCTAAGCACAGATGGAGAAACCCCGGACGAGCTCATTGTCGCCATG
TAATCACAGATTCATATGTTGCAGAAGGCAAGTATGACCGCAAGCAAGGCGTTTTCCCTGTATGGTCTTTAATATTTTGT
CCATGAGCATTATTACCATGCTTCAAGTGGAGTAGCGGTACGCTGCACACAATGTATATATAGTTGTTGTAGCTTGGTTC
TCTTATCCACCATTGGAAGGTGGTGCTAGTAGCAGCGAGGATAATTTTCATACTACCTATCTAAGAATGGGGTACCTGTT
AGTTAGCTAACTCTTGAGTTACTATGTGATTATGCCATATTGGGATTTGCGGTCTGTGGTGAACACCCATTATATAGCCT
TCTGGAT--GGCGAAGGCGGCGCTTTCCTGAAGGCGTTGTCTTCGACTTTTCGACTACCTCTTTTTGTAGTGCATGTGTT
GCCAAGGATGATGGTTAATGTTGATGCGTGTAGCGTGCCCTTGCGTGTCATGTTATTTGTTTTCTCTTTTATTTAATAAT
TTGTCCCTGTGCATCCTCGATGTCTTGACTAGTTCTTGATTTTACAGACCGAGTGTATATTGTCCTTTATTGAGAAGAAA
AATATAAGACACGAATGTTTGAAATGGTACCTTATGGTGCTCCCTCCGATCAGAAAAGTGGACGTCTGACGATGCACTCA
ACCTTTTTGAAACTTTGATCATATGGAAAACGATATGCTGAATGAAAATATCAACATTGGTTTTACCAGCCATAATTATT
CCTAGTTATATTTTGAATTTGGCTTCTGTAGCATGCTGTGATAGAAAACTGTAGTTTAAAATTTCAAATTGTAGACAATG
AAAAGGAGGAACTAGGTAGCACTTGATCCAATGTATCCTGACGTAGGTGTTGTGTGCTTAAACATGTTTCAGACTAGAGC
AAAAAATAAAAAATCCTGATGATAAGTTACATGTGCTGCATGCGTTGTGGACTGAAATCTGATCAACCTTTTGTTATTTA
CTGCAATCAATGTAAAGGGGAGACAATTCGAAGCAACAAAAATAAGTGGTTGTTCTGACATGCACATGCCGGTGAAATGC
ACCCGGCTAAAAACAGAAAGTGT---------------------------------------------------------
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>chr3B_1067
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-------------------------------------------------------------------------TCTGAAG
CTGATATCCAGTGTCTGAAGTCTGTGCAACAATCAGTGAATGATCCCAACGGTGTACTCAAATCCTCATGGATCTTTAAA
AATGCCACCGAAGGTTACATCTGCCTCTTTACTGGTGTGGAATGTTGGCACCCCGACGAGAATAGGATTTTCTCTCTGCG
TTTGGGCAACCTTGGACTTCAAGGTTCATTTCCTCGTGGTCTACAGAACTGTTCAAGCGTGACAGGCATGGACCTGTCAA
ATAACAATTTGTCAGGACCAATCCCTCAGGAAATTTCACGGGAGATGCCGTATCTGACATTTCTCGATCTTTCGTACAAT
AGCTTTTCGGGTTCAATCCCACAGAATATCTCAAATATGACATATCTGAATCTCCTCAATCTCCAGCATAACCAACTTAG
CGGTCAAATTCCACCGCAATTCGATTTGCTTACTCGGTTAATCGCATTCAATGTAGCGGAGAACTTGTTATCAGGGCCTA
TTCCTCCTTTGCTACAGAAC---TTTCCGGCTTCGAACTTTGCTGGTAACCAAAGGCTTTGTGGTGCACCATTGCATGAT
TG------------------------------------------------------------------------------
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>SNPs
S---------------------------S---------------------------------------------------
------------------S-----------------------------S---------------S-SSSSSSSS------
---S------S-S------S-------------------S--S-------S-------------------------S---
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
-------------------S------------------------------------------------------------
---------------------------------------------------------------------------S----
-----------S-S------------S-S--S--------SSSSS-------------S---------------------
-------------------------------------------S-S-S-S-SS---------------------------
----------------------------------------------------------S--S------------------
----S----------------------------------------------S----------------------------
---S----------------------------------------S-----------S--------S--------------
---------SS------------------------S----------------------S------SS-------------
-------------------------------------------S-----S-----------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S---------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S-------------------------------------------S-------------
-----S-----------------------------S--------------------------------------------
---------------S----------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----S-----------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------S-----------------S--------------------S--
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
----------------S-S-------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------S----------------------------S---------------------------
------------S-----------------SS-----------S--S--------------------S------------
------------S-----------------S-------S----S-----------SSSSS--SSS---------------
----------------------------------------------------------------------------S---
-S--------S-------S-----SS-------S-----------S--S--------S------------S----SSS--
SSSS-SSSS-S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-------S--------S------------
-------------------------S------------S-----------------------S-----------------
---------------------------------------------------------------------S----------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_842
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----------------------AAAAGCCCGCTGGTTGTTTC--------------------------------------
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>reverse_2777
--------------------------------------------------------------------------------
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--------------------------------------------------------CGGTTATGTGGCACCAGAGT----
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>forward_844
--------------------------------------------------------------------------------
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------------------------AAGCCCGCTGGTTGTTTCTA------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_2798
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CGG
GAGCACTCTGGTGGC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>forward_845
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AGCCCGCTGGTTGTTTCTAT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_3297
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GACGCTTCAAGTGGAGTAGC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
