>input_sequence_41044
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--------------------ATGGCCTCGCCGGCGCCGGTTCCGGCCTCGCCGGGGTCCTCCTCTCAGGTCCCTTTACCC
TTCTTTGATCTTCCCCGCCTTGATTGATTAATGTTTCCGCAGCTTTAATTTCCTCCCCTGTGCAATCTCCTTGGTGATGG
ACTGATGGTTATGTAATGCTATGAGGTCAATTTCGGCGTGGTGGGCGCTGGTGTAATGCTCAGAGGTTGATTTCGTTGCT
ATTGCGGGGGTAGGTTTGGTTGCATCTGGCTGCTTTGTTTGGTAGGGATGGCTGGATTGTGATGAGTATCTACATGCCGG
ATCCCTGAACAAAAAGGTTGAGCCTTGTTCTAGAAGAACATCAATGTTGGCTGCATATTTGTTTGGATAGCCTCAGAATA
GGATTTGGTGATCGATCCTGCACACATGCCTTTGGTTCGGGACCGGATACATGAGAAATTTTGTTCCTTTATTCATCTGT
TAGGCTGGATACA--TGCGTTACTGTTAGTACCAAAGTTATAGACATGTCCACTTGGACTATTGTCTATATATGGTGAGG
GCAGGTATGTGAAGACTGTTTAACCAGTTGCAGGGAGGTTAGGAGCTTCAAACAACAACAAATAACTGTGGGTTATTCTC
TAAAGTCATAGTTGGGAACTTGGAATCAAGAGAATATGTAGTAGAGAATGAAGAAAAATGTGAAATTTGTGCAATCATTA
AAGGGGTTACACAGTTCCCATCTCCTGTCAAGTAAGCTAATTGATATAGAATTCAGATCAGTGTAAGCTTGTTATTGGTC
GATATTTCCATTGCAATTGGCAATGCAGCAGTGTTAACCTATTTGCGGTTC--------------------TTAAGATTT
CAGACAATGTGTTCTCAATCTACACTGTTACATAACTAACAATAGTGATTGATGGGCCGAA-------------------
-TTGCTGTATATCCCAGTAATATAATGGAACACAATTATGGCAACTCAATCCAGCAAAACAATTGTCTTGGCCAATCTCC
TCTTTAGGCTCTGTTGGGGACAACAGTATAAGAAATAGCTGTGTTGTTGTGACATTGTTTAACCAAAGACAACTGCCAGC
ATGGAAAGCAAATGTATTGTGCAAACCATTAGATATTTCTTTTGTATTCATGTTTATAATCTGGAATGGCTGTGCATTTT
TCTTTAGATTGTAGGAATGGTTGTGTTAGATGTGTTCAGGCTTGCGCAGTTTACAAACACCACCTTTTGCACTATCCACT
AATCATCCTACAGGTAGTAGGGAGAGTGGAAAAGGTTG-TTGACTTGCATTTGTGTTTTCCTGATAAGAGTTAAATTTCA
TGTTTTCAAATTGAAATGCTTACTTCAGATAACTTGCTTGCCTTGCCTGATATAATAAAATACTAAAAAGAAACCTTCTG
ATGTTGGCAGAAAAAACGAGGTGCAACGGAATCAATTGGCCTGTATGCTGTCCAGTGTTGTGAATGTCATAAATGGCGTA
CAGTTTCAACGAAAGATGAATTTGAGACAATTCGTGAGAACTTCACTGAAGACCCATGGTTCTGCAGTAAAAGACCTGAG
TGCTCGTGTGAAGACCCTCCAGACATTGAGTACGACAGCAGCCGCATCTGGGTCATCGACAAGCCCAACATACCAAAGCC
TCCGCCCAAGACCGAGAGACTTGTGATCATGAGAGGTGATCTGTCTAAAATGGACATCTACTATGTCCTGCCAAACGGGA
AGCGTGCAAGGGGCATCGGGGACGTGCAGAAGTTCCTCGACACAAACCCAGAGTACAAAGACCGCATATCAGCTGAAAGC
TTCAGTTTTACGGTGCCCAAGATCGTTGAGGAGACCGTTTCGCAGAGCTCTTTGTGGAAGACTAAAAAGGCTAAAAAGCA
GGACAAGATAAATGCTTCAAGCAGCAAGAAGGACAAGGCAAATGCTTCAAGCAGCGAGAACTAG----------------
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>chr1D_1_TraesCS1D01G252500
ATGTCAATTTTTTATATGTAGCATGGAAAATATACTTGAGTAGCCATGGCAATTTTTACTTTATTTCCATGGCAAAATTA
CTCTATTTTTGCCATGGAAAATTTTAGTCCATTTTTTGCCATCGCATACTTTTAATGACATGGCAAATTTTACTTTATTT
TTGCCATGGCAAATTTATTGTAAA------GGCAATTTTAATTTAAATATGATGCCAAATTTACATTTTTCAGGAACACG
GCGACTTTTTACTATGTAGCATGGTATATACTTGTGTTCACATGGAAAATTTTAATTTATTTTCCACGGAAAACTTAATC
CATGTCTGCGATGGAAAATTTTAATCCATTTTTTTCCATGGCAAAATCTACTCCATTTTTACCATGGCAAGAATGCTTTT
ATTCACATGGCAAATTTTAGTTTTTTTTGCCATGGCAAAATCTACTCCATTTTTGCCATGGCAAGAATGCTTTTATTCAC
ATGGCAATTTTTCGTTTATTTTGCCATGTAATTTTTTCTTTTTAAATACTTGGTTTTTATTTGTCATAACGTTTTCGGAC
GGGGGTTTTCCAAATCGAACGTTCGGTGAATATTAGGTTTTA-CCTATGTCATTTTTCTGCTTTTTATAGATGATGGCAT
TTTTTTGGTACTGGG--ATTTTTTAGCTTCTTTACAAGGCATATAAGACGGTGATGGACAAGTTGCGTTAGGGT--TGTT
TTTTTTTCACCTTTATTCAGGCTGATCCATCCTTC---------------------------------------------
--------------------------------------GTAACAAACAAATTGTTTGGTGGGTGGTC-------------
---------------------------------TGACATTGAGGGTGGATCACTTTCGGTGAGCATACCGTGGACGATCC
TGTCCGTATATCCCCGTAACCACTTGCCCGAGATCCACTCTCCCCACTTCCGTCCCCATCCGGACGGCCGACCTTGGCTC
CGTCCTCTCGCATCCGCCCGCCTACTACCGGCGCCGTCGCCGGTGGCTTCTCCAGCGGGGCGCCTCCGAGTTCCCGACGC
AGGCCACCTCACTGTCGAACATGGCCTCGCCGGCGCCGGTTCCGGCCTCGCCGGGGTCCTCCTCTCAGGTCCCTTTACCC
TTCTTTGATCTTCCCCGCCTTGATTGATTAATGTTTCCGCAGCTTTAATTTCCTCCCCTGTGCAATCTCCTTGGTGATGG
ACTGATGGTTATGTAATGCTATGAGGTCAATTTCGGCGTGGTGGGCGCTGGTGTAATGCTCAGAGGTTGATTTCGTTGCT
ATTGCGGGGGTAGGTTTGGTTGCATCTGGCTGCTTTGTTTGGTAGGGATGGCTGGATTGTGATGAGTATCTACATGCCGG
ATCCCTGAACAAAAAGGTTGAGCCTTGTTCTAGAAGAACATCAATGTTGGCTGCATATTTGTTTGGATAGCCTCAGAATA
GGATTTGGTGATCGATCCTGCACACATGCCTTTGGTTCGGGACCGGATACATGAGAAATTTTGTTCCTTTATTCATCTGT
TAGGCTGGATACA--TGCGTTACTGTTAGTACCAAAGTTATAGACATGTCCACTTGGACTATTGTCTATATATGGTGAGG
GCAGGTATGTGAAGACTGTTTAACCAGTTGCAGGGAGGTTAGGAGCTTCAAACAACAACAAATAACTGTGGGTTATTCTC
TAAAGTCATAGTTGGGAACTTGGAATCAAGAGAATATGTAGTAGAGAATGAAGAAAAATGTGAAATTTGTGCAATCATTA
AAGGGGTTACACAGTTCCCATCTCCTGTCAAGTAAGCTAATTGATATAGAATTCAGATCAGTGTAAGCTTGTTATTGGTC
GATATTTCCATTGCAATTGGCAATGCAGCAGTGTTAACCTATTTGCGGTTC--------------------TTAAGATTT
CAGACAATGTGTTCTCAATCTACACTGTTACATAACTAACAATAGTGATTGATGGGCCGAA-------------------
-TTGCTGTATATCCCAGTAATATAATGGAACACAATTATGGCAACTCAATCCAGCAAAACAATTGTCTTGGCCAATCTCC
TCTTTAGGCTCTGTTGGGGACAACAGTATAAGAAATAGCTGTGTTGTTGTGACATTGTTTAACCAAAGACAACTGCCAGC
ATGGAAAGCAAATGTATTGTGCAAACCATTAGATATTTCTTTTGTATTCATGTTTATAATCTGGAATGGCTGTGCATTTT
TCTTTAGATTGTAGGAATGGTTGTGTTAGATGTGTTCAGGCTTGCGCAGTTTACAAACACCACCTTTTGCACTATCCACT
AATCATCCTACAGGTAGTAGGGAGAGTGGAAAAGGTTG-TTGACTTGCATTTGTGTTTTCCTGATAAGAGTTAAATTTCA
TGTTTTCAAATTGAAATGCTTACTTCAGATAACTTGCTTGCCTTGCCTGATATAATAAAATACTAAAAAGAAACCTTCTG
ATGTTGGCAGAAAAAACGAGGTGCAACGGAATCAATTGGCCTGTATGCTGTCCAGTGTTGTGAATGTCATAAATGGCGTA
CAGTTTCAACGAAAGATGAATTTGAGACAATTCGTGAGAACTTCACTGAAGACCCATGGTTCTGCAGTAAAAGACCTGAG
TGCTCGTGTGAAGACCCTCCAGACATTGAGTACGACAGCAGCCGCATCTGGGTCATCGACAAGCCCAACATACCAAAGCC
TCCGCCCAAGACCGAGAGACTTGTGATCATGAGAGGTGATCTGTCTAAAATGGACATCTACTATGTCCTGCCAAACGGGA
AGCGTGCAAGGGGCATCGGGGACGTGCAGAAGTTCCTCGACACAAACCCAGAGTACAAAGACCGCATATCAGCTGAAAGC
TTCAGTTTTACGGTGCCCAAGATCGTTGAGGAGACCGTTTCGCAGAGCTCTTTGTGGAAGACTAAAAAGGCTAAAAAGCA
GGACAAGATAAATGCTTCAAGCAGCAAGAAGGACAAGGCAAATGCTTCAAGCAGCGAGAACTAGCCATGGCAGCAAATGC
AAAACTGTCGCCTGC-TGCTTGGATGATCCTACCTCATCTACCTTGAAGTTAGTCATCAAGTCGGG------TCTCTCTC
TCTGCGATGTTACTCTGAGCGCTCCAATGCACTGAATCTCTTCGTTTTTATGCACGAGTTTCTGGTAAAATTCTGAGATG
CTCGAGAAGGGCTGTAGCT--TTCTCTTCTAATAAAAAGATCTAGTTACAGATGTCCTTGAGTTTACCATCCGCCGTGAT
ACATTGTTTTACCAGATGGCCATATGCGTAGAGATCTCATTAGAAAGCAGCTGAATTGGTCAATACTGTCCTAAGCTAGG
GTGTTAATTCTGCCATCGTTTGATTTGATTTACATTCTGCACTGCGAAACCTATATATGACAATTGCTATCCATCA----
----------GTCATCAACCACAAATTCTGGCAAGGCCACATAGGTAGCAGAAACT--AACGCCAGATGAAGGCTCACAT
ATTGCAAGATTCTGTGTTTTGAAATCCTTAGAGCAACTCCGAAATCCTTAGAGCAACTCCAACG----------------
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--------------------------CATCGACCCAAACGGACGCGTGTTTGTTCTGTTTTTTGTCCGTTTGGGTCGGCT
TGTCCGCCCCCTTATGTGTTTGGGTCGGCAATGCG-------------------------------------C-------
--AGATGCATTTTTGTCCTGGCGGCCGGTTTGCGGCCATTTTTTAGCTCTTTTTGTGGCATATCAATAGATTTTGGCCCA
AGTTCACATAATTCAAACAAAAATACAAA-TATATCATAGTTTCACAGCCAAATAAATATCTCATTGTTTACAAGCCAAA
TAAAAA-TTAAATTATCTCAAATACATTTGAAAGAAAAAAATAGACGATACATCTATTGGTTGCCAAGCTGAGCCCACAT
--GCTCAACCAAATCATCTTGCAGTTGAATATGAGTATCCTAATCACGCATTTGATGATGAAATTCGGTGAACTGTGCAA
ACGTTGCCGCTCCTCCATGCTCAGGCACAACA------------------------------------------------
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-------------------------------------------------------------------------------C
AACGTTGTCACCCTGAAACTGAAACCCT
>chr1A_1
ATGTCAATTTTTGATATGTAGCAT-GAAAATATACTTGAGTAGCCATGGCAATTTT-ACTTTATTTCCATGGCAATATTA
CTCTATTTTTGCCATGACAAAATTTACTCCATTTTTTGCTATCACATACTTTTAATGATATGGCAAATTTTACTTTATTT
TTTCCATGGCAAATTTATTGTAAAGAGCATGGCAATTTTAATTTAAATATGATGCCAAGTTTACAAACATGGCAAAA---
------TTTTACTATGTAGCATGGTATATACTTGTGTTCACATGGCAATTTTTAATTTATTTTCCATGGAAAACTCAAAC
CATTTCTGCGATTGCAAAATTTAATCCATTTTTT----------------------------------------------
----------------------------GCCATGGCAAAATCTACTCCATTTTTGCCATGGCAAGAATGCTTTTATTCAC
ATGGCAAATTTTCATTTATTTTGCCATGT-ATTTTTTCTTTTTAAATACTTGGCTTTTATTTGTCACAACGTCTTCGAAG
GGGGGTTTTCCGGATCGAACGTTCGATGAATATTAGGTTTTTGCCTATGTCATTTTTCTGCTTTTTATAGATGATGACAT
TTTTTGGTACTGCTTTTATTTTTTCGCTT-TTTACAAGGCATGTAAGGAGGTGATGGATGAGTTGCGCTCGGGTTGTGTG
TTTTTTTCATTTTTATTCGGGCTGATCCATCCTTAGTACTTCTTCTGTAAATTAATATAAAAGCATTTAGATCATTAAAA
TAGTAATCGAATCGCTCTTATATTAGTTTACGGATAGAGCACCAAATAAATCGTCCGGTAGACGGTTTCCAGACCTGACT
TGCGGCAATTATCGGCGTTCTTATTTTTATTTTTGACATAGAGGGTGTATCAATTTCGGTGAGCATACCGTGGACGATCC
TGTCCGTATATCCCCGTAACCACCTGCCCGAGATCCACTCTCCCCACTTCCGTCCCCATCCGGACGGCCGACCTTGGTTC
CGTCCTCTCGCATCCGCCCGCCTACTACCGGCGCCGTCGCCGGTGACCTCTCCAGCGGGGCGCCTCCGAGTTCCCGACGC
AGGCCACCTCACTGTCGAACATGGCCTCGCCGGCGCCGGTTCCGGCCTCGCCGGGGTCCTCCTCTCAGGTCCGTTTACCC
TTCTTTGATCTTCCCCGCCTTGGTTGATTAATGTTTCCGCAGCTTTAATTTCGTCCCCTATGCAATCTCCTTGGTGACGG
ACTGATGGTTATGTAATGCTATGAGGTCGATTTCGGCGTGGTGGGCGCTGGTGTAATGCTCAGAGGTTGATTTCGTTGCT
ATTGTGGGGCTAGGTTTGGTTGCATCTGGCTGCTTTGTTTGGTAGGGATGGGTGGATTGTGATTAGTATCTACATGCCGG
ATCCCTGAACAAAAAGGTTGAGCCTTGTTCTAGAAGAACATCAATGTTGGCTGCATATTTGTTTGGATGGCCTCAGAATA
GGATTTGGTGATCGATCCTGCACACATGCCTTTGGTTCGGGAAGGGATACATGAGAAATTTTGTTCCTTTATTCATCTGT
TAGGCTGGGTTTATGTGCATTACTGTTAGTACTGAAGTTATAGACATGTCGATTTGGACTATTGTCTATATATGGTGAGT
GCAGGTATGTGAAGACTGTTTAACTAGTTACAGGGAGGTTAGGAGCTTCAAACATCAACAGATGATTGTTGGTTATTCAC
TAAAGTCATAGTCGGGAACTTGGAATCAGGAGAATATGGAGGAGAAAATGAAGA-AAATGTCAAATTTATCCAATTAC--
AAGGGGTTAAGCTGTTCCCATCTCCTGTCAATTAAGCTAATTGATATAGAATTTAGATCAGTGTAAGCTTGTTATTGATC
GATATTTCCATGGCAATTGGCAATGCAGCAGTGTTAACCTATTTGCGGTTCTTAAGATTTCATACAATGTGTA-------
-------------CTCAATCTACACTGTTACATAACTAACAATAGTGATTAATGGGTCCAAAATAAAAGTTGTTTTTGTT
TTTGCTGTATATCCCAGTAATATAATGGAACACAATTATGGCAACTTGATCCAGCAAAACAATTGTCTTGGCCAATCTCC
TCTTTAGGCTCTGTTGAGGACAACAGTATAAGAAATAGCTGTGTTGTTGTGACATTGTTTAACCAAAGACAACTGCCAGC
ATGGAAAGCAAATGTATTGTGCAAACCATTAGATATTTCTTTTGTATTCATGTTTATAATCTGGAATGGCTGTGCATTTT
TCTTTAGATTGTAGGAATGGTTGTGTTAGATGTGTTCAGGCTTGCGCAGTTTGCAAACACCACCTTTTGCACTATCTACT
AATCATCCTACAGGTAGTAGGGAGAGTGGAAAAGGTTGTTTGACTTGCATTTGTGTTTTCCTGATAAGAGTTAAATTTCA
TGTTTTCAAATTGAAATGCTTACTTCAGATAACTTGCTTGCCTTGCCTGATATAATAAAATACTAAAAAGAAACCTTCTG
ATGTTGGCAGAAAAAACGAGGTGCAACGGAATCAATTGGCCTGTATGCTGTCCAGTGTTGTGAATGTCATAAATGGCGTA
CAGTTTCAACGAAAGATGAATTTGAGACAATTCGTGAGAACTTCACTGAAGACCCATGGTTCTGCAGTAAAAGACCTGAG
TGCTCGTGTGAAGACCCTCCAGACATTGAGTACGACAGCAGCCGCATATGGGTCATCGACAAGCCCAACATACCAAAGCC
TCCGCCCAAGACCGAGAGACTTGTGATCATGAGAGGTGATCTGTCTAAAATGGACATCTACTATGTCCTGCCAAACGGGA
AGCGTGCAAGGGGCATCGGGGACGTGCAGAAGTTCCTTGACACAAACCCAGAGTACAAGGACCGCATATCAGCTGAAAGC
TTCAGTTTTACGGTGCCCAAGATTGTTGAGGAGACCGTTTCACAGAGCTCTTTGTGGAAGACTAAAAAGGCTAAAAAGCA
GGACAAGATAAATGCTTCAAGCAGCAAGAAGGACAAGGCAAATGCTTCAAGCAGTGAGAACTAGCCATGTCAGCAAATGC
AAAACTGTCGCCTGCCTGCTTGGATGATCCTACCTCATCTACCTTGAAGCTAGTCATCAAGTCGGTTCTCTCTCTCTCTC
TCTGCGATGTTACTCTGAGCGCTCCAATGCACTGAATCTCTTCCTTTTTATGCATGAGTTTCTGGTAAAATTCTGAGATG
CTCGAGAAGGGCTGTAGCTTGTTCTCTTCTAATAAAAAGATCTAGTTATAGATGTCCTTGAGTTTACCATCCGCTGTGAT
ACATTGTTTTACCAGATGACCATATGCGTAGAGATCTCATTAGAAAGCAGCCGAATTGGTCAATACTGTCCTAAGCTAGG
GTGTTAATTCTGCCATCGTTTGATTTGATTTACATTCTGCACTGCGAAACCTGTATACTCCAGATGAAGGCTGACATACT
CCAAGATTCTGTCATCAACCACAAATTCTGGCAAGGTCGCATAGGTAGCAGAAACT--AACGCCAGATGAAGGCTCACAT
A-----------------------------------------AATCCTCAGAACAACTCCAACACGGGGAGAATATCATA
CGGAAACCAATATTCAATGAAAATTTCGTGAAAACTATATTTTAAAGTTTCAAAAAAATCTAAAAAAATGTGGGATGTTA
ATAAGGTGATGTTTTATTGCTACATAAAATTTCTAGTTGAGAAACATTACGAGATGTGGCACTATTTAACACTGATTTTG
TCTTTTTCATAGCTCACATCTCGTAATGTGTTTTAACTTGAAATTTTATATGGCAAAAAACCATCATCCTCTTAACGTCC
TACATTTTTTTCAATTTTTTTGACACTTTAAAACATCTTTTTCTCGTGGTTTTTATCGGTTTCCACCGAATGTTGGTTTC
CGTATGGTATTCTCCCACTTCCAACACGTCGACCCAAACGGATGCGTGTTTGTTCCGCTTTTTGTCCATTTGGGCTGGCT
TGTCCGCCCCCTTATGTGTTTGGGTCGGCAATGCCCGGACGTATTTTCGTATGTGTTTGGTTCGGCAATGCCC-------
--GGACGTATTTTCGTCCTGGCAGCCGGTTTGCGGCCATTTTT-AGCTCTTTTTGGGACATATCAATACATTTTGTCCCA
AGTTCACATAATTCAAACAAAATAT-AAA-TATCTCATAGTTTCACAACCAAATAA--ATCTCATTGTTTAGAAGCCAAA
TAAAAAATTAAATTATCACAAATATATTTGAAAGAAAAAA-TAGCTGAAACATCTATTGGTTGCGAACGTGAGTTCACAT
--GTTCAACCAAATCATCTTGCAGTTGAATGTGGGTTTCCCAATTACGCATTTGATGATGAAATTCGGTGAACTGTGCAA
ACGTTGCCGCTCCTCCATGTTCAGGCACAACA------------------------------------------------
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-------------------------------------------------------------------------------C
AACATTGTCACCCTGAAACTGAAACCCT
>chr1B_774
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---------------------------------TGACACGGAGGGGGTATCAATTTCGGTGAGCA-----TGGACGATCC
TGTCCGTATATCCCTGTAACCCCTGCCCTGAGATCCACTCTCCCCTCTTCCGTCCCCA------------ACCTTGGTTC
CGTCCTCTCGCATCCGCCCGCCTACTACCGGCGCCGTCGCCGGTGGCCTCTCCAGCGGGGCGCCTCCGAGTTCCCGACGC
AGTCCACCTCACTGTCGAACATGGCCTCGCCGGCGCCGGTTCCGGCCTCGCCGGGGTCCTCCTCTCAGGTCCCTTTACCC
TTCTTTGATCTTCCCCGCCTTGGTTGATTAATGTTTCCGCAGCTTTAATTTCGTCCTCGATGCAATCTCCTTGGTGACGG
ACTGATGGTTATGTAATGCTATGAGGTCGATTTCGGCGTGGTGGGCGCTGGTGTAATGCTCAGAGGTTGATTTCGTTGCT
ATTGTGGGGGTAGGTTTGGTTGCATCTGGCTGCTTTGTTTGGTAGGGATGGGTGGATTGTGATTACTATCTACATGCCGG
ATCCCTGAACAAAAAGGTTGAGCCTTGTTCTAGAAGAACATCAATGTTGGCTGCATATTTGTTTGGATGGCCTCAGAATA
GGATTTGGTGATCGATCCTGCACACATGCCTTTGGTTCGGGACCGGATACATGAGAAATTTTGTTCCTTTATTCATCTGT
-AGGCTGGATTTATGTGCATTACTGTTAGTACCGAAGTTATGGACATGTCGATTTGGACTATTGTCTATATATGGTGAGT
GCAGGTATGTGAAGACTGTTTAACTAGTTACAGGGAGGTTAGGAGCTTCAAACATCAACAGATAATTGTTGGTTATTCCC
TAAAGTCATAGTCAGGAACTTGGAATCAGGAGAATATGTAGGAGATAATGAAGA-AAATGTCAAATTTATCCAATTAG--
AAGGGGTTAAGCTGTTCCCATCTCCTGTCAATTAAGCTAATTGATATAGAATCTAGATCAATGTAAGCTTGTTATTGGTC
GATATTTCCATGGCAATTGGCAATGCAGCAGTGTTAACCTATTTGCGGTTC--------------------TA-------
-------------CTCAATCTACACTGTTACATAACTAACAATAGTGATTAATGGGCCCAAAATAAAAGTTGTTTTTGTT
TTTGCTGTATATCCCAGTAATATAATGGAACACAATTATGGCAACTCGATCCAGCAAAACAATTGTCTTGGCCAATCTCT
TGTTTAGGCTCTGTTGAGGACAACAGTATAAGAAATAGCTGTGTTGTTGTGACATTGTTTACCCAAAGACAACTGCCAGC
ATGGAAAGCAAATGTATTGTGCAAACCATTAGATATTTCTTTTGTATTCATGTTTATAATCTGGAATGGCTGTGCATTTT
TCTTTAGATTGTAGGAATGGTTTTGTTAGATGTGTTCAGTTTTGTGCAGTTTACAAACACCACCTTCTGCACTATCCACT
AATCATCCTACAGGTAGTAGGGAGAGTGGAAAAGGTTGTTTGACTTACATTTGTGTTTTCCCGATAAGAGTTAAATTTCA
TGTTTTCAAATTGAAGTGCTTACTTAAGATAACTTGCTTGCCTTGCCTGATATAATAAAATACTAAAAAGAAACCTTCTG
ATGTTGGCAGAAAAAACGAGGTGCAACGGAATCAATTGGCCTGTATGCTGTCCAGTGTTGTGAATGTCATAAATGGCGTA
CAGTTTCAACGAAAGATGAATTTGAGACAATTCGTGAGAACTTCACTGAAGACCCATGGTTCTGCAGTAAAAGACCTGAG
TGCTCGTGTGAAGACCCTCCAGACATTGAGTACGACAGCAGCCGCATCTGGGTCATCGACAAGCCCAACATACCAAAGCC
TCCGCCCAAGACCGAGAGACTTGTGATCATGAGAGGTGATCTGTCTAAAATGGACATCTACTATGTCCTGCCAAACGGGA
AGCGTGCAAGGGGCATCGGGGACGTGCAGAAGTTCCTCGACACAAACCCAGAGTACAAAGACCGCATATCAGCTGAAAGC
TTCAGTTTTATGGTGCCCAAGATTGTTGAGGAGACCGTTTCGCAGAGCTCTTTGTGGAAGACTAAAAAGGCTAAAAAGCA
GGACAAGATAAATGCTTCAAGCAGCAAGAAGGACAAGGCAAATGCTTCAAGCAGCGAGAACTAGCCATGGCAGCAAATGC
AAAACTGTCGCCTGT-TGCTTGGATGATCCTACCTCATCTACCTTGAAGTTAGTCATCAAGTCGGT------TCTCTCTC
TCTGCGATGTTACTCTGAGCGCTCCAATGCACTAAATCTCTTCGTTTTTATGCATGAGTTTCTGGTAAAATTCTGAGATG
CTCGAGAAGGGCTGTAGCTTTTTCTCTTCTAATAAAAAGATCTAGTTACAGATGTCCTTGAGTTTACCATCCGCCGTGAT
ACATTGTTTTACCAGATGACCATATGCGTAGAGATCTCATTAGAAAGCAGCCGAATTGGTCAATACTGTCATAAGCTAGG
GTGTTAATTCTGCCATCGTTTGATTTGATTTACATTCTGCACTGCGAAACCTATATATGACAATTGCTATCCATCA----
----------GTCATCAACCACAAATTCTGGCAAGGCCACATAGGTAGCAGAAACCTAAACGCCAGATGAAGGCTCGGAC
ATTGCAAGATTCTGTGTTTTGAAATCCTCG--------------------GAGCAACTCTAACG----------------
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--------------------------CGTCGACCCAAATGGACGCGTGTCTATTTCGCTTTTTGTCCGTTTGGGTCGGCT
TGTCCGCCCCCTTATGTGTTTGGGTCGGCAATGTG-------------------------------------C-------
--GGACGCATTTTTGTCCTCACGGCCGGTTTGTGGCCATTTTT-AGCTCTTTTTGCGACATACCAATACATTTTGGCCCA
AGTTCACATAATTCGAACAAAATTACAAA-TATCTCATAGTTTCACAACCAAATAAATATCTCATTGTTTAGAAGCCAAA
TAAAAA-TTAAATTACCTCAAATACATTTGAAAGAAAAAA-TAGCCGATACATCTATTGGTTGCCAAGGTGAGCCCACAT
--GCTCAACCAAATAATCTTGCAATTGAATGTGAGTTTCCCAATCACGCATTTGATGATGAAATTCGGTGAACTGTGCAA
ACGTTGCCGCTCCTCCATGCTCAGGCACAACA------------------------------------------------
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-------------------------------------------------------------------------------C
AACATTGTCACCCTAAAACTGAAACCCT
>chr4B_3440
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-----------------------------------------------TTAGAGCAACTTCAACG----------------
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--------------------------CGCTGATCCAAACAAACGCATGTTTTGGCCTTCTTTTATCCGTTTGGGTCGGTT
TGTCCGCCCCTTCCTGTGTTTGGGTCGGCAGTGCG-------------------------------------CCCAACGC
ATGGATGCATTTTCATCCTCGTGGTCGGTTTGCGGCATTTTTTTAGC-CTTTTTGCGACATATCAATAAAATTTGGCCCA
AGTTCACATAATTAAAACAAAAATACAAAATATATCATAGTTTCACAACCAAATAGATATCTCATAGTTTACAA-CCAAA
TAAAAA-TTAAATTGTCTCAAATA--TTTGAAAGAAAAAC--AGTCAATTCATTTATTGGTTGCCAACTTGAGCCCACAT
AAGCTCAACCAAATCATCTTGTAGTTGAATGTGAGTTTTCCAATCACGCATTTGATGATGAAATTCGGTGAACTGTGCAA
ACGTTGCTGCTCCTCCATGCTCGGGCACAACATTATCACCCTGAAATTGAAACCCTTGATCGTAGATTTCATCCGGACTC
TCATTCTCTACGATCATGTTGTGCATGATCACACAAGTAGTCATCACCTCCCACAACTTTTTGGTGCTCCAAGTTCTAGC
AAGACATCGAATGATGCCCCATCGAGATTGAAGAACACTAAAGGCACACTCCACATCCTTCCTAGCACTCTCTTGTGCTT
GGACAAATCTTTTCTTCTTCTCTCCTACAGGGTTGGGGATTGTCTTCACAAGAGTAGTCCACTTAGGATAGGTACCGTCA
GCTAGGTAGTATCCTTTGTTGTAGTGGTGGCCATTGATCTCAATATTGACCTCTGGGCAGTTGCCTTCTGCAAGCCGTCC
AAACATTGGACAATGTTGAAGCACGTTGATGTCGGTGTGAGATCTGGCCATGCCGAAGAAAGAGTGCCAAATCCAGAGAT
CTTGTGAAGCCATGGCCTCAAGTATGATAGTGCAAGCTTTGACACCCTATACTACCCCTGGCAAGCAGAAGGGCAGTTCT
TCCACTCCCAATGCATACAATCTATACTACCAAGCATCCCAAGAAAGCCCATACTAGAATTGATCACCAACAGCCGGGTT
GTATCTGCATCAGTTGACTCTCTCAATTACTCCGGGCCAAACAATGGTACCACAACCTTATAGAACTTGTACATGGAGCC
TAGGCATGTGGACTCACTCATTCATACATACTCATCAATGAGATCACTGAAACTCCATATGGAAGCATCTGAATAGCTGC
AGTGCATTTCTGATAAGAGAGGAAGCCAATCTTTCTGAGGGCATCCTCCTTGCTCTCGAAATAGTTGTCGTACGCCACCC
CCTCCCAGATACGATTTAACACATGTCTAGCCATACTGAAACAATGCCGGAATAGGTGGTGTTTGAAGAACGGGTTAGGG
GACTCAAACTAGTCCTGCCAGAGTAGGCAATGGTCGCTCTGTCAGTTGCGATTCAATGCAAGAGTATGCCCTAGGATTGA
GCCCCTGAACATCGGCGGCTGCCTACTAATGTGGTCATGGATGACCAAAGCAGCAGCCACAATGTCCTCATCATTGGATG
AAGAATCATCTGAATCGCAAATGAAATTATGGAAAAAGTACTCGTCGTTGGAGTCCATTTGTATCTTGCAGGCAAATCGT
CTAACACCTTGCGGGCGTCGTGGAAGAAGTCGGTCGATGAAGACCCTCGCACCTCTGCGATACCAGGTAACAGGCCTGGA
GGCGTGGAGGCGAACATGGTAGCATCCAGCGAGCGAGGTACCCGCACTTGCGTGCTGCGGGCAGGGGAGGCAAGGGTGTG
GTGGCGTCGATGTTGGGGTGCTGATACCTCCTTTTAGTGATCCAGTAAAGGACAGAAAGTATCCCACACTATTTCCCAGA
GGTGACCCTGGGTTATCGAACCCACAAGAGGAAGGATCCCTTGAAGCGATGGTCTCTAGCAAGCTTTTGATAAAGGAATA
ATTCCAGCTTTTGACCAGATCAATCAGGCAAATTGTAATTCAACGCTTATAATAAAAAGAGGTACGGGTATGACCTTATG
AGGTCTTAATGCTTAAAATCATGCATTTGTGTTGGGACCAGATATGATCTTAATTTGTGCGTTGGAAGTCACCCATCGAG
ATGTGCTTCTTACAAACCGAAGTGGGGGATGTGTCCAAATAACATCTTGACCGGCACGTGTCGTGCATCAAGAATAAGTT
GTCTTACCGCAGGCCTTATTTGTCATGCGAGGTTGCCTCGATAATTAAGATTATAATAATTAGACAAGATCTTTGGGCGT
TTAATGACTACACCTCATGAATCCCCAAGGATTGGATCTGCGTTACTGTACTAAACCCTTCTATCACTGGTGTTCAGAGT
AACACTCCTCGTTCTCCCTACACTTAGCCTCACCGTTACTCGATCTCCATGATCCTGGGTACCTGCAGGGATGAAGATCG
CGGACAAGACAAGAGACATCTACGGGACAATTTTATTTCACACATACGGGATGATAATTCAAAGCCCTTCCATTGACCCC
TACAACAAATACAAAGGGTTGCGAGGCCTATGCCTCAACCCATACCTTACCAAATTACTCACACATGCAGATCGGATCGC
AAAGAAAACATTGAACAACACATCTTGAAGATTGATTGATTGCAAATATGTCTTACAATGGCTGGCTTGTGCGATGCATG
AATACAAGTATGAAGTAGAGGGAGATGGACTATGGTGGTGATGGCGGCTATGGAGATGGAAATGGCAGTGGCTAGGGTTG
ATGAGAGTGGATGATGATGGTTCTATTCTAGCTTCGTTGACGATGTTTTACTGACTCTAGGAAAAAGGCTCGTGCATTGC
AACGTGGCATACATAATCTAGGAAAAAAGTGCATTACAGTGAGTCACACAAAATTTAGTCATTCAACATCAATTTTGTGA
TGATATCCAATATATGCGTTCAGATTCCTCACATATGTCTTCTTGTTCTCTCACCCTGTCTCATGGCATTTATCCTAGTG
CCAATGACTGCAGTGGCCCGACCTCAAACGGTCAAGCCTCTATGTATCTATGCCGTACCTAGATCAGTATGCTGGCACAT
ACAGTACATCAATGTATATATCAAAGTGCAATCACATGTATAAATAATGTAAAACTGATATATACCTCATAAGTCTCAGC
AGAAACAATCAAACGGGTGTGGAGTCCTATCAATGCCATCGGCAGGTTGAGTGTAGACCGTGACCCTGTACCGTACTCTT
ACTCGTCGGAAGAAAAGTATCAGCAACATGAGACATTGCAGCCGTGTAGGTCACTACATTGAATGTCCCGACAAGATCAA
AGTGTAGTAGGAAGCAAATTTATTTTCATGAGTACAATGAGTTGAGTCATGTAATGGGTGCTCAAAGGTTGTAAGGAATT
CATGAAATAAATAACGTTAATGTGTCATAATTTCATATATTAAATTGTATGAGTTATTGCTCTATGAACAAAGATTTGGA
CCAGTTTCGAGGATATGAGAAATATGGTCTATGGAAGAATTTGTGCATTACAAGGGTGGTAGTAACTTGTGAGGGCAATT
GACTCATGGAAAGGATCCTTCTTCTCTCCAAGTCTGATGATTTTCCAACATCTACAAAGGGACAAAGGAAGGACATAGGC
TATTGTTCTCAAGGAGTGGAGATAGTTAGAGCAACTTCAATGCGCTAATCCAAACGGACGCGTGTTTTGTCCCTCTTTTC
TCCGTTTGGGTCGGTTTGTCCACCCCTTTCTGCTTTTGGGTCGGCACTGCACCCAACGCATGGATGCATTTTCGTCCTCG
CGGTCGGTTTGCGGCATTTTTTTAGCCTTTTTGCGACATATCAATAAAATTTGGCCCAAGTTCACATAATTAAAACAAAA
ATACAAAATATATCATAGTTTCACAACCAAATAGATATCTCATAGTTTACAACCAAATAAAAATTAAATTGTCTCAAATA
TTTGAAAGAAAAACAGTCAATTCATTTATTGGTTGCCAACTTGAGCCCACATAAGCTCAACCAAATCATCTTGTAGTTGA
ATGTGAGTTTTCCAATCACGCATTTGATGATGAAATTCGGTGAACTGTGCAAACGTTGCTGCTCCTCCATGCTCGGGCAC
AACATTATCACCCTGAAATTGAAACCCT
>SNPs
------------S-----------S-------------------------------S------------------S----
----------------SS---S----S------------S---S--------------S---------------------
--S-------------------------------------------------------S------SSSS-SSSS--SSSS
SSSSSS---------------------------------------S--S-----------------S--------S--S-
---S--------S-S---S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------
-------S-----S---------------S-----------------------S------------S-----S----S-S
-----------SS------------S---------------S----------------------------------S---
-----S-SSSSSSSS---------S----S------------S----SS---------SS-------S-S---------S
---------SS-------S---------------S---------------------------------------------
---------------------------------------S-S----S----S--SS---S-SS---S-------------
---------------------------------------S-------S----S---------------------------
-----------------------------------------------------------------------------S--
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
----------------------S-----------------------------S------S-----------------S--
----------------------------S---------------------------------------------------
----S----------------------------------------------S-----------S----------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
----------SS------S--------------S----------------S-S--------------------------S
------------------------S----S------------------------S-----S----S---S--------S-
------------S---------------S------------S---S--------S------S------S-S----S-SSS
---------SS-S------------------S---------------------S--------------------------
-----------S------------------------------------------------------------SSSSSSSS
SSSSSSSSSSSSS-------------------------------------S-------S---------------------
-----------------------------------------------S--------------------------------
----------------S---------------------------------------------------------------
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-----------------------S--------------------------------------------------------
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-----------------------------------------------------------------S--------------
------------------------------------------------------S-------------------------
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------------------S--------------------------------S----------------------------
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----------------------------SSSSSSSSSSSSSS--------------------------------------
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---------------------------S---------------------------S------------------------
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--S----------------------------------------------------S-S----------S-----------
-----------------------------------------------S--------------------------------
----------------------------------------S---S-----------------------S-----------
------------------------------S-----S---S---------------------------------------
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---S------------------------
>forward_246
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------------------------------------------------------------------TTTTCAGGAACACG
GCGACT--------------------------------------------------------------------------
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>reverse_1710
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-----------------------------GCAGGGAGGTTAGGAGCTTC-------------------------------
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>forward_840
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--------------------CAGGCTGATCCATCCTTCGT----------------------------------------
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>reverse_2051
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--------------------------------------------------GATGGGCCGAATTGCTGTAT----------
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>forward_928
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----------------------------TGGTCTGACATTGAGGGTGG--------------------------------
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>reverse_2128
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-----------------------------------------------AATCCAGCAAAACAATTGTCTTGG---------
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>forward_1223
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---TTTGATCTTCCCCGCCTTGA---------------------------------------------------------
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>reverse_2984
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-----------------------CGTTGAGGAGACCGTTTCGC-------------------------------------
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>forward_1424
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-------------------------------------------AGGGATGGCTGGATTGTGATG----------------
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>reverse_3186
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-----------------------------------------------------------------GTCTCTCTCTCTGCG
ATGTTACT------------------------------------------------------------------------
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----------------------------
