>input_sequence_41029
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-------------------------------------------------------------ATTCCCCCCTCCCCCGCCG
TCTCGTCCCAGCTCGCCCTCCAGAGGTACGTCCCGCCCCTCTTCCCCCCTCTGATCTC----------------------
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----------------------------------------------------------------------------GCAG
CGGCGGCGGCGGATCTGGCCTTGATCCGTCGACCCCTTCCGCTAGATTGCTTGTTGGTTGTTGTTATTAGTCTGAAGAAT
GGATCGATTGGCGGAGGATCGGGTAGGGTTTCGGTTGCCTGTTGTC---TGATCTCTAATTCGTGTGGGTT-TAGGCGTT
AGAGGGGGGCTATCGAGTTGGATTTCGTTCGGTTTCGTTCGATTATTTCGGGGCCGTCGTCATGGGAGTACGGGTTGCAA
GTTTCGGAGGGGGAACCGTGCTGTTCTTGGGATCTCAGCCTGAATTAGGCGGGATGGTCTGGTCTGTTGGATTAATCTGT
TATGGCAGGAGTATATTGTGTTTCTAGGGAGTTCGCACCAGTAAAAATTCCTTTTTTGTTTAGAAATCTGTGCCCTG-TC
CTCTGGTTGCTACTGTGTTTAACCCGGTTTGTCCCTTCGGTTCGTTCTCCTTTGCTGATGATTTATTCTGTCGGTGCAGG
TTTTAGTCTTCCTTCATGGCGGCCCTCATCAAGCTCGGAAGCCTTCTTAGGCAGAGTGCTGTGGCGAGCAGTGCCTCGAC
CGGCTCGGCTCCTGCCCTGTTCAACGCTGCCCGCTTCATGTGCGCCGGCCAGCCTGCTGATGGCTCCAAGCTTTTCGTTG
GCGGTGAGTTTTCTTGCCTTACTTTGCTTGTACTG--TGTCCATTACCTTGTCTAGACCATCAGGT--------------
---------------------------------------------------------CTCAGTTTTATTTATCAGGTCTT
GCCTGGGCTACTGATGATCATTCGCTGAAGGAGGCGTTTCAAAGCTTTGGTGAGGTCGTTGAAGGTCAGTGTATATCTTT
CAACCCTTATCAAATT-GCCAAAAGTCATTTTATCTGTTATTTATACACGGTGT--------------------------
-----------------------------------------------------------------TAGCTGTTTGTTCTG
TATGT--GTAGTC--------------ATTGTTTCAAGATCTGAATG-TTAGCTATACATGGAAATTTGCTTGACCGTGC
TT-TTATTCTGATGCTCTTTAGCTTACCTTGTACGGTGTATTAATTATTACCGCTTCATAATGCTTGTCTTTCATGTTAC
AGCACGTGTTATCACTGACAGGGAGACTGGAAGGTCTAGAGGGTTTGGTTTTGTGAGCTTCGCCAGTGGCGAGGATGCAA
AGAGTGCTGCAGAAAACATGGACGGCAAGGTGAGCCAAAACCAGATTTTTAGACATGTGTGCTGTTGTACTTCAATATGG
AGTTAAACTTCTGCCATTTAGATGCTTATCAGGGTATGATAATTTTCACCATGTACTTACG-------------------
--------CCTTGTTAATTATTATTTCAAAGTTTTGTGCCTGCCTTTGGCCAAATTGCCTAGGCCTGATATTGATGCCAT
GCTTCACTGGCCACTACCTTTAAGGATCTAATTTCCATCCAATGCTTTGCAGGAGCTTGCTGGGAGGAACGTCCGTGTGA
ACTTTGCCAACGAGCGACCTTCGGGTGGTGGCGGCGGTGGC---TTCTCTCGTGGCGGCGGTGGCTATGGAGGTGGTGGC
GGCGGATACGGCGGCGGTGGCTACGGTGGTGGCGGTGGATACGGCGGCGGCCGTGGTGGTGGTGGAGGTGGCTATGGTGG
TGACCATGAGTCCTACTAAGAAGAGCACTGGCTATCAAATTTAAAATAATGAAGTTTTTAGGACAGTGTCTTGATTATGT
GGAACCTAATGTTAC---------------------------------------------GTCGTTCTATGTTCTTTTTG
GTTTTGGTTTGTTTCTTGATAGTGCAAGAGTTAATTTGTGTATGCTGCTTCGAGGCTCGGATGAGTCTCAA-GGAAG-TT
CATGCATTTTGCCGTATATTGCACTGT--ACTTGTAGAGAATGA----------TCGCGTATGTTAGTGTGA---TCATA
AATTCTCTTCGCATTACATTCAAATATATTGAGATCTTCGC---------------------------------------
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>chr3B_1_TraesCS3B01G457900
AGGATTTGCTAGACCCGGGGTTTGTCTGCAAGGACCGAGCCGCCACCATTATCTGAGTTA-TGTGGGCAATATGGTCTAG
CAGGAATAAGTATACCCATGAGGAGGTTAAGTACGAGCCTGGTAGGTCAATGGTTCTAGTAAAAGAACTCATTCATGCTT
TGTACATTCCGGCCACTCCGTCTGCAGGGCAGCAGAGGAAGAATGTGGACTGGATACCACCAGGGACCGGCTGGGTAAAG
GTGAACACATATGCTGCTGTTGATGTGAATGGAGGAACTTCATCCATTAGACTTGTGGCAAGAGATCAGGGAGGTCTCGT
GCTCGCCAGAAGTCGCAAGCTAA-GG-GGGGTGACTGACCCGTATGTTGCTGAACTCCTAGGAGTGAGAGAAGCTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGCAGGTTGCCGTCGAAACGGATTGCCAAA-CTGTCACGGAGGAATGGACGGCGACA
AAATGCTGGTCGATGGGGAGTCCAGTAATCAGCGAAATCAAATCATATCTCTAAAATTTTCAGGGTTTGCGCATCAGCTA
CGTGAGAAGAGAGGCCAATAAGGCTGCTCATTGGTGTGCTCAGGAGGGCCTTAAGAGTGCCTCTGATGTTAATCAGTTTG
ATGTAATCCCTGATTCTCTGGTTGCCTTAGTGCAATCCGATGTAAACCGTCACATAATTGAATAAAATGCCT-AGAGGAC
GGTTCTAAAAAAAAATGCAAAACGCTTAATAGGAGAAATGTTTTCTTGGAGAGCAGGCCAAGGAGTTTAAAAGCAAAATC
GGCATGCCCGTAGCG------GCCGAGATCACCGGCTGGCTCATT--CCTATCCACCAACCAC-CGTCCAGCCCACCACG
AGCCCACCAGATATTTTCCTCCCAGACCCGGAGATATTTTGGAAGCCTGCTACATAAGGCCGCAGCGCACCACAAAACCC
TAGCCGCCTCCGCCCCCCTCCTCTTAAACCCCCAACCCCCACT-------CCCCATTCTCCATTCCCCCCTCCCCCGCCG
TCTCGTCCCAGCTCGCCCTCCAGAGGTACGTCCCGCCCCTCTTCCCCCCTCTGATCTC----------------------
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----------------------------------------------------------------------------GCAG
CGGCGGCGGCGGATCTGGCCTTGATCCGTCGACCCCTTCCGCTAGATTGCTTGTTGGTTGTTGTTATTAGTCTGAAGAAT
GGATCGATTGGCGGAGGATCGGGTAGGGTTTCGGTTGCCTGTTGTC---TGATCTCTAATTCGTGTGGGTT-TAGGCGTT
AGAGGGGGGCTATCGAGTTGGATTTCGTTCGGTTTCGTTCGATTATTTCGGGGCCGTCGTCATGGGAGTACGGGTTGCAA
GTTTCGGAGGGGGAACCGTGCTGTTCTTGGGATCTCAGCCTGAATTAGGCGGGATGGTCTGGTCTGTTGGATTAATCTGT
TATGGCAGGAGTATATTGTGTTTCTAGGGAGTTCGCACCAGTAAAAATTCCTTTTTTGTTTAGAAATCTGTGCCCTG-TC
CTCTGGTTGCTACTGTGTTTAACCCGGTTTGTCCCTTCGGTTCGTTCTCCTTTGCTGATGATTTATTCTGTCGGTGCAGG
TTTTAGTCTTCCTTCATGGCGGCCCTCATCAAGCTCGGAAGCCTTCTTAGGCAGAGTGCTGTGGCGAGCAGTGCCTCGAC
CGGCTCGGCTCCTGCCCTGTTCAACGCTGCCCGCTTCATGTGCGCCGGCCAGCCTGCTGATGGCTCCAAGCTTTTCGTTG
GCGGTGAGTTTTCTTGCCTTACTTTGCTTGTACTG--TGTCCATTACCTTGTCTAGACCATCAGGT--------------
---------------------------------------------------------CTCAGTTTTATTTATCAGGTCTT
GCCTGGGCTACTGATGATCATTCGCTGAAGGAGGCGTTTCAAAGCTTTGGTGAGGTCGTTGAAGGTCAGTGTATATCTTT
CAACCCTTATCAAATT-GCCAAAAGTCATTTTATCTGTTATTTATACACGGTGT--------------------------
-----------------------------------------------------------------TAGCTGTTTGTTCTG
TATGT--GTAGTC--------------ATTGTTTCAAGATCTGAATG-TTAGCTATACATGGAAATTTGCTTGACCGTGC
TT-TTATTCTGATGCTCTTTAGCTTACCTTGTACGGTGTATTAATTATTACCGCTTCATAATGCTTGTCTTTCATGTTAC
AGCACGTGTTATCACTGACAGGGAGACTGGAAGGTCTAGAGGGTTTGGTTTTGTGAGCTTCGCCAGTGGCGAGGATGCAA
AGAGTGCTGCAGAAAACATGGACGGCAAGGTGAGCCAAAACCAGATTTTTAGACATGTGTGCTGTTGTACTTCAATATGG
AGTTAAACTTCTGCCATTTAGATGCTTATCAGGGTATGATAATTTTCACCATGTACTTACG-------------------
--------CCTTGTTAATTATTATTTCAAAGTTTTGTGCCTGCCTTTGGCCAAATTGCCTAGGCCTGATATTGATGCCAT
GCTTCACTGGCCACTACCTTTAAGGATCTAATTTCCATCCAATGCTTTGCAGGAGCTTGCTGGGAGGAACGTCCGTGTGA
ACTTTGCCAACGAGCGACCTTCGGGTGGTGGCGGCGGTGGC---TTCTCTCGTGGCGGCGGTGGCTATGGAGGTGGTGGC
GGCGGATACGGCGGCGGTGGCTACGGTGGTGGCGGTGGATACGGCGGCGGCCGTGGTGGTGGTGGAGGTGGCTATGGTGG
TGACCATGAGTCCTACTAAGAAGAGCACTGGCTATCAAATTTAAAATAATGAAGTTTTTAGGACAGTGTCTTGATTATGT
GGAACCTAATGTTAC---------------------------------------------GTCGTTCTATGTTCTTTTTG
GTTTTGGTTTGTTTCTTGATAGTGCAAGAGTTAATTTGTGTATGCTGCTTCGAGGCTCGGATGAGTCTCAA-GGAAG-TT
CATGCATTTTGCCGTATATTGCACTGT--ACTTGTAGAGAATGA----------TCGCGTATGTTAGTGTGA---TCATA
AATTCTCTTCGCATTACATTCAAATATATTGAGATCTTCGCTAGAAATTTGGTAATGGTACCAGACTACCAGTGGCGTAT
TTTCTATGCTGCCGAAAGTTAGAAAAGAACAAAAGACAGTTTTCGGATAACACAGTTCAAAGGCACGCTAGTAAAATTTG
TTGATATAGGCCAACCAGCTATCAATGGAGAATTAGACTAGATATACTTAGAAATTAGAATCTACTCCCAGTATATTTGT
GACCATCCCACCTTGTCCCTTAAATGTCCATTTTTAAGTCTGTGACACTTAACAAT-------TAAAACAGCATAATTTT
GATATTTCAAATGCAAATATTACAACAGAGATGTTCAATAGGTTTGTT---TCCATAGATTCTAAATTCAACGAGTTAGA
ATCACATCTCA----------------------------CTCCATTGTGCCCCTTGAGATCCATTCAACAAGGGTACAAG
CGTAAATCACAGGTTAACCGGCAGCGCGTCCTATACAATTTGATGATTGTCAAGTTGTTTGTCAAGTTGCAACATGGAGT
GAATCAATAAATTGGCTGACATGTAGAGCAACAAGACGCAAAATTTATGAATTTCATGGTTGACGAGCCCGATGGCCACA
TTGTTTTCACTCGTGCGATCGCATCACAAAACTTCATGACTGAGTTAAAAGACGGTGTACCACCGATGAATGACATGCAA
GTTGTAGGGCGTGATTTTTTTTTCTCGTGAAACAAAGCATGCACGTTTTGCCAAAAAGGTCGAGTCCCCTTCCCTTATGC
CTACAAAGCCCGTAGATACGACCTTCCACGCACGCAAACAACTCATCCTTCCCGAGTATCCCGGCGTCATTTTACTTCTG
AAACAACAAG------------AAAGCTCAATGACATTTGACTGAA-------CGGGCGTGATGTCTTTCATGAACGATG
TCAGTAGAGGGATGAAGGGTGCCTGTCTGCGGACGGATTCTGGGTGGACAACGTCATAGTCCAGGCGGGTATGCGTGAAG
GTGGGGGCTGCAAACGTCTGAGGCTGCCTGGTTAGATGCCGGGGAGGTACATCTGCGG
>chr3B_2
-GGATTTGCTAGACCCGGGGTTTGTCAGCAAGGCTAGAGCGGCCATCATTATCTCAGTTA-TGTGGGCAATATGGTCGAG
CAGGAACAAGTACACCCATGAGGAGGTTAAGTACCAGCCTGGTCGGT----GGTTCTAGTGCAAGAACTCATTCATGCTT
TGTATATTCCGGCCACTCC-TCTGTAGTTCACCAGAGGAACAATGTGGACTGGATACCACCAGAGCCCGACTGTGTAAAG
GTTAACACAGATGATGCGGTTGATGTGAATGGGGGAATTTCAGCCATTGGACTTGTGGCAAGAGATCAGGACGGACTCGT
GCTCGCCAGAAGTCGTAAGGTAA--GAGGGGTGACTGACCCGTATGTTGCTGAACTCCTAGGGGTGCGAGAAGTTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGTGGGTTGCCATTGAAACGGACTGCCAAG-CTGTCACGGAGGAATGGAGGGCGTCG
AAGTGCCGATCGATGGGAAGCCCAGTAATCAGCGAAATCAAATCATATCTCCAAAACTTTCAGGGGCTGTGCATCAGCTA
CGTGAGAAGAGAGGCCAACAAGGCTGCTCATTGGTGTGCTCAGGAGGGCCTCAAGAGTGCCTCGGATGTTATTCTTTTTG
ATGTATTCCCTGATTCTCTGA------TAGTGCAATCTGATGTAAACCGTCACATAATTGAATAAA-TGCCT-AGAGGAC
GGTTCTAAAAAAAAA-----------------------------------------------------------------
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>chr3D_2
-GGATTTGCTAGACCCGGGGTTTGTCAGTAAGGCTAGAGCGGCCATCATTATCTCAGTTA-TGTGGGCAATATGGTCGAG
CAGGAACAAGTACACCCATGAGGAGGTTAAGTACCAGCCTGGTCGGTCGGTGGTTCTAGTGCAAGAACTTATTCATGCTT
TGTATATTCCGGCCACTCCGTCTGAAGTTCAGCAGAGGAACAATGTGGACTGGATACCACCAGAGACCGGCTGTGTAAAG
ATTAACACAGATGCTGCGGTTGATGTGAATGGGGGAACTTCAGCCATTGGACTTGTGGCAAGAGATCAGGGCGGACTCGT
GCTCGCCAGAAGTCGTAAGGTAA--G-GGGGTGACTGACCCGTATGTTGCTGAACTCCTAGGGGTGCGAGAAGCTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGCGGGTTGCCATCGAAACGGATTGCCAAA-CTGTCACGGAGGAATGGATGGCGACG
AAGTGCCGGTCGATGCGGAGCCCAGTAATCAGCGAAATCAAATCATATCTCCAAAACTTTCAGGGGTTGTGCATCAGCTA
CGTGAGAAGAGAGGCCAACAAGGCTGCTCATTGGTGTGCTCAGGAGGGCCTCAAGAGTGCCTCGGATGTTATTCTTTTTG
ATGTATTCCTTGATTCTCTGATTGCCTTAGCGCAATCTGATGTAAACCGTCACATAATTGAATAAAATGCCT-AGAGGGC
GGTTCTCAAAAAAAAA----------------------------------------------------------------
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>chr3D_2
-GGATTTGCTAGACCCGGGGTTTGTCAGTAAGGCTAGAGCGGCCATCATTATCTCAGTTA-TGTGTGCAATATGGTCGAG
CAGGAACAAGTACACCCATGAGGAGGTTAAGTACCAGCCTGGTCGGTCGGTGGTTCTAGTGCAAGAACTCATTCATGCTT
TGTATATTCCGGCCACTCTGTCTGAAGTTCAGCAGAGGAACAATGTGGACTGGATACCACTAGAGCCCGGCTGTGTAAAG
ATTAACACAGATGCTGCGGTTGATGTGAATGGGGGAACTTCAGCCATTGGACTTGTGGCAAGAGATCAGGGCGGACTCGT
GCTTGCCAGAAGTCGTAAGGTAA-GG-GGGGTGACTGACCCGTATGTTGTTGAACTCCTAGGGGTGCGAGAAGCTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGCGGGTTGCCGTCGAAACGGATTGCCAAA-CTGTCACGGAGGAATGGATGGCGACG
AAGTGCCGGTCGATGGGGAGCCCAGTAATCAGCGAAATCAAATCATATCTCCAAAACTTTCAGGGGTTGTGCATCAGCTA
CCTGAGAAGAGAGGCCAACAAGGCTGCTCATTGGTGTGCTCAGGAGGGCCTCAAGAGTGCCTCGGATGTTATTCTTTTTG
ATGTATTCCCTGATTCTCTGATTGCCTTAGTGTAATCTGATGTAAACCGTCACATAATTAAATAAAATGCCT-AGAGGGT
GGTTCTCAAAAAAAAA----------------------------------------------------------------
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>chr7B_2
-GGATTTGCTAGACCCGGGGTTTGTCTGCAAGGACCGAGCCGCCACCATTATCTCAGTTA-TGTGGGCAATATGGTCTAG
CAGGAATAAGTATACCCATGAGGAGGTTAAGTACCAGCCTGGTAGGTCGATGGTTCAAGTACAAGAACTCATTCATGCTT
TGTATATTCCGGCCACTCCGTCTGCAGGGCAGCAGAGGAAGAATGTGGACTGGATACCACCAGAGACCGGCTGGGTAAAG
GTGAACACAGATGCTGCTGTTGATGTGAATGGGGGAACTTCAGCCATTGGACTTGTGGCAAGAGATCAGGGAGGTCTCGT
GCTCGCCAGAAGTCGCAAGCTAA-GG-GGGGTGATTGACCCGTATGTTGTTGAACTCCTAGGAGTGAGAGAAGCTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGTAGGTTGCCGTCGAAACGGATTGCCAAAACTGTCACGGAGGAATAGATGGCCACA
AAATGCTGGTCGATGGGGAGTCCAGTAATTAGCGAAATCAAATCATATCTCCAAAATTTTCAGGGTTTGCGCATCAGCTA
CATGAGAAGAGAGGCCAATAAGGCTGCTCATTGGTGTGCTCAGGAGGGCCTTAAGAGTGCCTCTGATGTTAATCAGTTTG
ATGTAATCCCTGATTCTCTGATTGCCTTAGTGCAATCTGATGTAAACCGTCACATAATTGAATAAAATGCCT-AGAGTGC
GGTTCTCAAAAAAAAA----------------------------------------------------------------
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>chr7B_2
-GGATTTGCTAGACCCGGGATTTGTCTGCAAGGACCGAGCCACCACCATTATCTCAGCTA-TGTGGGCAATATGGTCTAG
CAGGAATAAGTATACCCATGAGGAGGTTAAGTACCAGCCTGGTAGGTCGATGGTTCTAGTGCAAGAACTCATTCATGCTT
TGTACATTCTGGCAACTCCGGCTGCAGGGCAGCAGAGGAAGAATGTGGACTAGATACCACCAGAGACCGGCTGGGTAAAG
GTGAACACAGGTGTTACTATTGATGTGAATGGGGGAACTTCAGCCATTGGACTTGTGGCAAGAGATCAGGGAGGTCTCGT
GCTCGCCAGAAGTTGCAAGCTAA-GG-GGGGTGACTGACCCGTATGTTGCTGAACTCCTAGGAGTGAGAGAAGATGTGCG
TCTAGCTATGGAGAAGGGCTGGACGCAGGTTGCCGTCGAAACGGATTGCCAAA-CGGTCAGGGAGGAATGGACGGCGATG
AAATGCTGGTCGATGGGGAGTCCAGTAAGAAGCGAAATCAAATCATATCTCCAAAATTTTCAGGGTTTGCGCATCAGCTA
CGTGAGAAGAGAGGCCAATAAGGCTGCTCATTGGTGTGCTCAGGAGGGCCTTAAGGGTTCCTCTGATGTTAATCAGTTTG
ATGTAATCCCTGATTCTCTGGTTGCCTTAGTGCAATCCGATGTAAACCGTCACATAATTGAATAAAATGCCT-AGAGGGC
GGTTCTCAAAAAAAAGATTGCAA---------------------------------------------------------
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>chr6B_2
-GGATTTGCTAGACTCGGGGTTTGTCTGCAAGGACCGAGCCGCCACCATTATCTCAGTTAATGTGGGCAATATGGTCTAG
CAGGAATAAGTATACCCATGAGAAGGTTAAGTACCAGCCTGGTAGGTCGATGGTTCTAGTACAAGAACTCATTCATGCTT
TGTACATTCCGGCCACTCCGCCTACAGGGCAACAGAGGAAGAATGTGGACTGGATACCACCAGAGACCGGCTGGGTAAAG
GTGAACACAGATGCGACTGTTGATGTGAATGGGGGAACTTCAGCCATTGGACTTGTGGCAAGAGATCAGGGAGGTCTGGT
GCTCGCCAGAAGTCGCAAGCTAA-GG-GGGGTGACTGACCTGTATGTTGCTGAACTCCTAGGAGTAAGAGAAGTTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGCACATTGCCGTCGAAACGGATTGCCAAA-TGGTCACGGAGGAATGGATGGCGACA
AAATGCTGGTCGATGGGGAGTCTAGTAATCAGCGAAATCAAATCATATCTCCAAAACTTTCAGGGTTTGCGCATCAACTA
CGTGAAAAGAGAGGCCAATAAGGCTGCTCATTGCGGTGCTCAGGAGGGCCTTAAGAGTGCCTCTGATGTTAATCAGTTTG
ATGTAATCCCTGATTCTCTGGTTGCCTTAGTGCAATCCGATGTAAACCGTCACATAATTGAATAAAATGCCT-AGAGGGC
GGTTCTAAAAAAAAA-----------------------------------------------------------------
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>chr2D_2
-GGATTTGCTAGACCCGGGGTTTGTCAGTAAGGCTAGAGCGGCCATCATTATCTCAGTTA-TGTGGGCAATATGGTCGAG
CAGGAACAAGTACACACATGAGGAGGTTAAGTACCAGCCTGGCCGGTCGGTGGTTCTAGTGCAAGAACTCATTCATGCTT
TGTATATTCCGGCCACTCCGTCTGAAGTTCAGCAGAGGAACAATGTGGACTGGATACCACCAGAGCCCGGCTGTGTAAAG
ATTAACACAGATGCTGCGGTTGATGTGAATGGGGGAACTTCAGCCATTGGACTTGTGGCAAGAGATCAGGGCGGACTTGT
GCTCGCCAGAAGTCGTAAGGTAAGGG-GGGGTGACTGACCCGTATGTTGCTGAACTCCTAGGGGTGCGAGAAGCTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGCGGGTTGCCGTCGAAACGGATTGCCAAA-CTATCACGGAGGAATGGATGGCGACA
AAGTGCCGGTCGATGGGGAGCCCAGTAATCAGCAAAATCAAATCATATCTCCAAAACTTTCAGGGGCTGTGCATTAGCTA
CGTGAGAAGAGAGGCCAACAAGGCTGCTCATTGGTGTGCTCAGGAGGGCCTCAAGAGTGCCTCGGATGTTAGTCTTTTTG
ATGTATTCCCTGATTCTCTGATTGCCTTAGTGCAATCTGATGTAAACCATCACATAATTGAATA----------------
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>chr1A_2
-GGATTTGCTAGATGCCGGGTTTGTGAGCAAAGACAGAGCGGCCATCATTATCACAGTTA-TGTGGGCAATATGGTCGAG
CAGGAACGAGTATACCCATGAGGAGGTTAAGTACCAGCCTGGTCGGTCGATGGTTCTACTAAAAGAACTTATTCAGGATC
TATATATTCCGGCCGATCTTTCTGATCCTCAGCAGGGGAGAAGTGTGGTATGGACACCGCCAGAGCCTGGCTGTGTGAAA
ATCAACACGGATGCTGCCGTCGATGTGAATGCTGGAACTTCAGCTGTTGGGCTTGTGGCAAGAGATCCTGGAGGACTAGT
GCTAGCCAGAAGTCACAAGTTGA-GA-GGGGTGACTGATCCTTATGTGGCTGAACTGCTAGGAGTTAGAGAGGCTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGCGGGTTACTGTCGAAACGGACTGCCAAA-CTGTCACGGAGGAATGGGTGGCGACG
ACGTGCAGATCGATGGGAAGCCCAGTCATCAGCGAAATCAAAACATATCTCCAAAATTTTCAGGAGCTATGCATCAATTA
TGTAAGGAGAGAGGCAAACCAAGCTGCTCATTGGTGTGCCCAGGAGGGCCTTAGAGGTGCCTCGGATGTCATTTCTTATG
ATGTATTCCCTGTCTTTTTGATTGCCTTAGTGCAATCTGATGTAAACCGAGTCAGAATTGAGTAAAGTGCCTTAGAGGGC
GGTTTCTCAAAAAAAAA---------------------------------------------------------------
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>chr7D_71
-----------------------------------------------------------------------ATGGTCGAG
CAGGAACAAGTACACCCATGAGGAGGTTAAGTACCAGCCTGGTCGGTCGGTGGTTCTAGTGCAAGAACTCGTTCATGCTT
TGTATATTCCGGCCACTCCGTCTGAAGTTCAGCAGAGGAACAATGTGGACTGGATACCACCAGAGCCCGGCTGTGTAAAG
ATTAACACAGATGCTGCGATTGATGTGAATGGGGGAACTTCAGCCATTGGACTTGTGGCAAGAGATCAGGGCGGACTCGT
GCTCGCCAGAAGTCGTAAGGTAA-GG-GGGGTGACTGACCTGTATGTTGCTGAACTCCTAGGGGTGCGAGAAGCTGTGCG
TCTAGCTATGGAGAAGGGCTGGACGCGGGTTGCCGTCGAAACGGATTGCCAAA-CTGTCACGGAGGAATGGATGGCGACG
AAGTGCCGGTCGATGGGGAGCCCAGTAATCAGCGAAATCAAATCATATCTCCAAAACTTTCAGGGGCTATGCATCAGCTA
CGTGAGAAGAGAGGCCAACAAGGCTGCTCATTGGTTTGCTCAGGAGGGCCTCAAGAGTGCCTCGGATGTTATTCTTTTTG
ATGTATTCCCTGATTCTCTGATTGCCTTAGTGCAATCTGATGTAAACCGTCACATAATTAAATAAAATGCCT-AGAGGAT
GGTTATAAAAAAAA------------------------------------------------------------------
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>chr3D_729
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-------------AATGCAAAACGCTTAATGGGACAAATGTTTTCTTGGAGAGCAGGGCAAGGATTATAAAGGCAAAATC
AGCATGCCCGTAGCG------ACCGAGATCAGCGGCTGGCTCATT--CCTATCCACCAACCAC-CGTCCAGCCCACCACG
AGCCCACCAGATATTTTCCTCCAAGCCCTCGAGATATTTTGGAAGCCTGCTACATAAGGCCGCAGCGCACCACAAAACCC
TA---GCCTCCGCCCCTCCCCTCTTAAACCCCAG-CCCCCACT-------CCCCATTCCCCATTCCCCCCTCCCCCGCCG
TCTCGTCCCAGCTCGCCCTCCAGAGGTACGCCCTGACCCTCTTCCCCCTT---ATCTC----------------------
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----------------------------------------------------------------------------GCGG
CGGCGGCGGCGGATCTGGCCTTGATCCGTCGCCCCCTTCCGCTAGATTGCTTGTTGGTTGTTGTTATTAGTCTGAAAAAT
GGATCGATTGGCGGAGAAACGGGTAGGGTTTCGCGCGGCTGTTGTC---TGATCTCTAATTCGTGAGGGTT-TAGGTGTT
AGAGAGGGGCTCTCGAGTTGGATCTCGTTCGGTTTTGTTCGATTATTTCGGGGCCGCCGTCATGGAAGTAAGGGTTGCGA
GTTTCGGA-GGGGAACCGTGGTGTTCTTGGGATCTCGGCCTGAATTAGGCGGGATGGTCTGATCTGTTGGATTAGTCTAT
TATAGCAGGAGTATATCGTGTTTCTAGGGAGTTTGCACCAGTAAAAGTTCTTT-TTTGTTTACAAATTTGTGCCTTTTTC
CTCCGGTTGA---TGTGTCTAACCCTGTTTGCCCCTTTC--------------GCTGATGATTTATTTTGTCGGTGCAGG
TTTTAGTCTTCCTCCATGGCGGCCCTCATCAAGCTCGGAAGCCTTCTTAGGCAGAGTGCTGTGGCTAGCAGTGCCTCCAC
CGGCTCGGCTCCTGCCCTGTTCAACGCTGCCCGCTTCATGTGCGCCGGCCAGCCTGCTGATGGCTCCAAGCTTTTCGTCG
GTGGTGAGTTTTCTTGCCTTACTTTTCTTGTACTGTATGTCCATTACCTTGTCTAGACCATCAGGTT-------------
----------------------------------------------------------TCAGTTTTATTTATCAGGTCTC
GCCTGGGCTACTGATGATCATTCGCTGAAGGAGGCGTTTCAATGCTTTGGTGAGGTCGTTGAAGGTCAGTGTATATCTTT
CAAGCCTTATCAAATTTGCCAAAAGTCATTTTATCTGTTATGTACACACGGTGTCG------------------------
-------------------------------------------------------------------GCTGTTTGTTCCG
GTATGTGGTAGTT--------------ATTGTTTGAAGATCTGAATGCTTAGCTATACATGGAAATTTGCTTGACTGTGC
TT-TTATTCTGATGCTCTTTAGCTTACCTTGTACGGTGTATTAATTATTACGGCTTCATAATCCTTGTCTTTCATGTTAC
AGCTCGTGTTATCACTGACAGAGAGACTGGAAGGTCTAGAGGGTTTGGTTTTGTGAGCTTCGCCAGCGGCGAGGATGCAA
AGAGTGCTGCAGAAAACATGGACGGCAAGGTGAGTCAAACC-AGAGTACCAGACATGTGTGCTGTTGTACTTTAATATGG
AGTTAAACTTCTGCCATTTAGATGCTTATCAGGGTTTGATAATTTTCACCATGTACTAAT--------------------
-----ACACCTTGTTAATTATTATTTCAAAGTTTTGTGCCTGCCTTTAGCCAAATTGCCTAGGCCTGATACTGATGCCAT
GCTTCACTGGCCACTACTTTTAAGGATCTAATGTCCATCCAATGCTTTGCAGGAGCTTGCGGGGAGGAACGTCCGTGTGA
ACTTCGCCAACGAGCGACCTTCGGGTGGTGGCGGCGGCGGCGGCTTCTCTCGTGGCGGCGGTGGCTATGGAGGTGGTGGC
GGCGGCTATGGTGGCGGTGGCTTTGGTGGTGGCGGCGGATACGGTGGTGGCCGTGGTGGTGGTGGCGGCGGCTATGGTGG
TGACCGTGAGTCCTACTAAGAAGAGCACTGGCTATCAAATTTAAAATAATGA-GTTTTTAGGACAGTGTCTTGATTATGT
GGAACCTAATGTTACGTCTGTCTGTTATCTGCGATAGTTGAACTCAATAGGGGCAGAGATGTGGTTCTATGTTATTTTTG
GTTTTGCTTT-TTTCTTGATGATGCAAGAGTTAATTTGTGTATGCTGCTTCGAGGCTTGGATGAGTCTCAA-GGAAGTTT
CATGCATTTTGCCGTATGTTGCGCTGTGTACTTGTAGAGAATGA----------TTGCGTATGTTAGTGTGA---TCATA
AATTCTCTTCGCATTACATTCAAATATTA--AGATCTTAGCTATAAATTTGGTAATGGTACCAGACTACGAGTGGCGTAT
TTTCTGTGTTGTATGCTGCCAAATAATAACCACAAGCAG-----------------------------------------
-----ATAGTCTTACCAGCTACCAATGGAGAATTAATGAAGACTCACTATATATGCGTCGAATCTATATTTGAGTGG---
--CCATCCCACCTTGTCCCTTAAATGTCCATTTTTAAGTCTGTGACACTAAAAATATATATTATAAAACGGCATAATTTA
GATATTTCAAATGCAAATATTACAACAGAGATTTTCAATAGGTTTGTTGAATCCACAGCTTCTAAATTCAACGAGTTAGA
ATCACATCTCACGCATTATGTGCCCCTTGCTCCATCCAACTCCATTGCGCCCCTTGAGCTCCATCCAAA---GGTACAAG
CGTAAATCACAGGTTCATCGGCAGCGCGTCCTATACAATTTGATGATTGTCAAGTTGTAACATT------------GAGT
GAATCAACGAATTGACTGGCATGTAGAGCAACAAAATGCACAACTTATGATCTTCATGGTTGACGAGCCTGATGGTGACA
TTGTCTTCACTCGTGCAATTGCATCACAAAACTTCATGACTGAGTC-AAAGATGGTGTACCACCGATGATTCACGTGCAA
GTTGTAGGGTGTGA-TTTTTTTCCTCATGAAACAAAGCATGCATGTTTTGCCAAAAGGTCA-AGTCCCCTTCCCTTACGC
CTACAAAGCCCGTAGATACGAGGTTCCACGCACGCAAACAACTCATCCTTCCCGAGTATCCCAGCGTCATTTTACTTTTG
AAACAACACGAAAGTCAACAAAAAAGCTCAATGACATTTGACCAAACACCTGTCGGGTGTGGTGTATGTCATGAACGACG
TCAGTAGAGGGACGAAGGGTACCTATCCGCGGACTGATTTTGGGTGGACAGCGGCATAGTCCAGGCGGGTAGGCGTGTAG
GTGGGGGCTGCAAACGTCCGAGAATGCCTGGTCAGAGGCCAGGGAGGTACATATGCG-
>chr3A_729
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-------------AATGCAAAACGCTTAATGGGAGAAATGTTTTCTTGGAGAGCAGGGCAAGGAG--TAAAAGCAAAATC
GGCATGCCCGTAGGCCGTAGCGCCGAGATCACCGGCTGGCTCATTTCCCTATCGACCAACCAC-CGTCCAGCCCACCACA
AGCCCACCAGATATTTTCCTCCCAGACCCGGAGATATTTTGGAAGCCTGCTACATAAGGCCGCAGCGCACCACAAAACCC
TAGCCGCCTCCGCCCCCCTCCTCTTAAACCCCAG-CCCCCAGCCCCCAGCCCCCACTCCCCATTCTCCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGCGGCGG
CGGCGGCGGCGGATCTGGCCTTGATCCGTCGCCCCCTTCCGCTAGATTGCTTGCTGGTTGTTGTTATTAGTCTAAAAAGT
GGATCGATTGGCGGAGGAACGGGTAGGGTTTCGCTTGCCTGTTGTCTGATGATCTATAATTCGTGTGGGTT-TAGGTGTT
AGAGAGGGGCTATCGAGTTGGATTTCGTTCGGTTTCGTTAGATTATTTCGGGGCCGTCGTCATGGGAGTACGGGTTGCGA
GTTTCGGA-GGGGAACCGTGGCGTTCTCGGGATCTCGGCCTGAATTAGGCGGGATGGTCTGATCTGTTGGATTAATCTGT
TATAGCAGGAGTATATCGTGTTTGTAGGGAGTTTGCACCAGTAAAAAATCTTTCTTTGTTTGCAAATTTGTGCC--TTTC
CTCTGGTTGA---TGTGTCTAACCCTGTTTGCCCCTTCGGTTCGTT----TTTGCTGATGATTTATTTTGTCGGTGCAGG
TTTTAGTCTTCCTCCATGGCGGCCCTCATCAAGCTCGGAAGCCTTCTTAGGCAGAGTGCTTTGGCGAGCAGTGCCTCGAC
CGGCTCGGCTCCTGCCCTGTTCAACGCTGCCCGCTTCATGTGCGCCGGCCAGCCCGCTGGTGGCAATAAGCTTTTCGTCG
GCGGTGAGTTTTCTTTCGTCGCTTTGCTTGTACTGTATGTCCATGACCTTGTATTGTAGAACTTGGCTCAGGTCTGGCCT
ATCCACTAACAACTTTTTTGTGTAGAACATGACTCTAGAAGCCTATCCACTAACGACCTTAGTTTTATTCATCAGGCCTG
GCCTGGGCTACTGACGATCATTCGCTGAAGGAGGCGTTCCAAAGCTTTGGAGAGGTCGTTGAGGGTCAGT--ACATCTTG
AAGCCTTGATCAAATC-TGTATAAGTCATTTTTTCTGGTATCTGTACAATAATACATGGAACTACTCCCTCTGTACCGAA
ATAGTTGTCGCTGGAGTAGCTGAACTTCAGCTACTCCAGCAACAACTATTTTGGTACAGAGGGAGTAGCTGTTTGTTCTG
GCATGGTTCATGTTAATGTTGCACTTAATTGTTTCAAGATATGAATGTTAAGCAATACATGGGAATTTGCTTGACTGTGC
TGGTTGTTCTGATGCTTTTCACTTATCTTGTAT--------------TTACTGCTTCATAATCCCCATCTTTCATGTTAC
AGCACGTGTCATCACTGATCGAGAGACTGGAAGGTCTAGAGGGTTTGGTTTTGTGAGCTTTGCGAATGAAGCTGATGCAG
ATAGCGCTGCAAAAGGCATGGACGGTCAGGTGAGTCAAAACTAGAGTATCAGACAT--GTGCTGTTCTACTTGACAATAG
AGTTTACTTCTA-CCATTTAGATGCTGATTAGGGTTTGATAATTTTCACCATGTACCATGTGCCTGCCGTTCCGTCAGGT
GGAAAACACCTTGTCAATTATTGTTTCAATGTTTTGTTCCTCCCTTTAGTC--ATTTGCTTGGCCTGATCCTGATGCTAT
GCTTCATTGGCCACTAGTTATAAGGATCTAATGCCCATCCAATGCTT-GCAGGAGCTTGCAGGGAGGAACGTCCGTGTGA
ACTTCGCCAATGAGAGGCCTTCGGGTGGT---------GGCGGCTTCTCACGCGGCGGCGGTGGCTATGGAGGAGGTGGT
GGCTTTGGCGGCGGCGGCGGCTATGGTGGTGGCGGCGGCGGCTATGGCGGTGGTGGCCGAGGTGGCGGTGGCTATGGTGG
TGACCGTGAAGCTTTCTAAGGAGAGCGCAGACTATCAAATTTAAAATAATGCGC-TTTTAGGACAGTGTCTTGATTATGT
GGAACCTATGTC-ACGTCTGTCTGTTATCTGCGATAGTTGAACTCAATAGGAGCAGAGATGTGGTTCTAG--TATTTTTG
TTTTTGGTTCGTTTCTTGATGGTGCAAGAGTTTAAGTC---ATGCTGCTTCGAGGCTTGGATGAGTCTCAATGGAAG-TT
CATGCATTTTGCCGTATATTGCACTGTGTACTTGTGGTGAGTCTCTGAGTTAAGTCGTGTATGTTAGTCTGATTATCATA
AATTCTCCAAGTATTACATTCAAACATGA--AGATCTTTGCTAGGAATTTGCTACTGGT---------------------
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>chr3D_742
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--------------------------TAATGGGAGAAATGTTTTCTTGGAGAGCAAGGCAAGGAG--TAAAAGCAAAATC
GGCATGCCTGTAGCG------GCCGAGATCACCGGCTGGCTCATC--CCTATCCACCAACCACACGTACAGCCCACCACG
AGCCCACCAGATATTTTCCTCCAAGCCCTCGAGATATTTTGGAAGCCTGCTACATAAGGCCACAGCGCACCACAAAACCC
TAGCCACCTCCGCCCCTCTCCTCTTAAACCCCAG-CCCCCACT-------CCCCATTCCCCATTCCC-CCTCCCCCGCCG
TCACGTCCCAGCTCGCCCTCCAGAGGTACGTCCTGCCCCTCTTCCCTCTG---ATC------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------CAG
CGGCGGCGGCGGATTTGGCCTTGATCCGTCGCCCCCTTCCGCTAGATTGCTTGTTGGTTGTTGTTATTAGTCTGAAAAAT
GGATCGATTGGCGGATAAACGGGTAGGGTTTCGCGCGGCTGTTGTC---TGATCTCTGATTCGTGTGGGTTCTAGGTGTT
AGAGAGGGGCTATCGAGTTGGATTTCGTTCGGTTTTGTTGGATTATTTCGGGGCCGTTGTCATGGGAGTACGGGTTGCGA
GTTTCGGA-GGGGAACCGTTGTGTTCTTCGGATTCAG-------------------------------------------
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>SNPs
S-----------------------------------------------------S-------------------------
----------------------------------S-------------S-------------------------------
---------------------------------------------------------------S----------------
---------S----------------------S---------S-----S-------------------------------
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---------------------------------------------------S----------------------------
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------------------------------S--------------------------S--------S-------------
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--------------------------------SSS-----------------------S---------------------
---------------------------------S--------------S-SSS---------------------------
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-------------------------------S--------------------------------------------S---
------------------S--------------S------------------------------------------S---
----S-------------------------------------------------------------------------S-
--------S-----------S---------------S------------------------S------------------
---S------------S----------------S----------------S--S--------S----S------S-S---
---------SSSS-----S------S-----S--------------SSSS-----------------S------------
-------------S------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
SSSSS-------S--------------------------------------------------------------S----
---------------------------------------------------S----------S-----------------
---------------------S----------------------------------------------------------
----------------------------------S------S---S-S-S----------------------S-------
-----------------------------------S---------------------S-SS-------------------
-----------------------------------------------S----------------------S---------
-----------------S--------------S---------------------------S-------------------
----S--------------------------------S------------------------------------------
-----S-----------------S-----------S--------S--------------------S--------------
-----S----------------------------------------------S---------------------------
--------------------------------------------------------------S----------S------
--------------------S------------------------------------S----------------------
--------------------------------------------------------------------------------
---------------------------SSSS-------S------------------------------S----------
-----S--S--SSSSSS-SS-S-S--S---S-S-SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS----S-SS--------S-------------SSSS---SSS---SSSS-SSSSSSSSS-SSSSSSSSS-SSSSSSS
SS-----------------------------------------------S--S-SS-------------S---------S
--------------------------------S----------------------S--S---------------------
-----------------------------------------------S----------S-----S---SSSS--------
---------------S-S----------------------------------------SSSSSSSSSSSSSSSSSS----
-------SS-----S---S---------------S-S---S--S------SS-----------------S-----SS---
----S-----------S--S-------------------------SS-----S----------------S-S--S-----
---------S----S-------S---S----------------S------------S-SSSS---------------S--
---------------------SS---------------------------------------S--------------S--
--------S---------------------------------SS-------------S---S---S-S----------S-
------------S-------S---S--S------S----S----------S--S-----------------S-----S--
------------------S---SS--------S---S---S-----------S----S
>forward_129
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-----------------------------AGTACGAGCCTGGTAGGTCA-------------------------------
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>reverse_2480
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-------------------------------------------------------------------------------T
GCCTGGGCTACTGATGATC-------------------------------------------------------------
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>forward_2093
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-------------------------------------------------------------------------CCCTGTC
CTCTGGTTGCTAC-------------------------------------------------------------------
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>reverse_3889
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------------------------------------------------AACACAGTTCAAAGGCACGC------------
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----------------------------------------------------------
