>input_sequence_41009
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------ATGGCGATGGCC
T------------CCTCCGTCGCCGCGGCGTCCCTCCGAGCGCTCGCCGGCGCCTCCCCGGCCCCGCTCCCGAAGCCGTT
CCTCGTGCTGCTCTCCCCGGCGCCCCCGCGCCGCCTCGGCCTCGGCCTCCGCGCCGCCCGCCCGCGCGGCCCGCTCGCCC
CGCTCGCCTCCTCTGACTCCTTTTTCGAAACCTCCGCGGCCGTCGACGTCGCCGAGCCGGAGGACGAGGCCCTGGAGGCC
GTCGCGGAGGAGGAGCCCGCCGTGGCCGAGGAGGA---GGAGGATGTGGCGGCCGAGGAGGAGGAGGTGGAGGAGGTCGG
GGAGTACGTGGAGCCGCCGGAGGAGGCCAAGGTGTACGTCGGCAACCTGCCCTACGACGTCGACAGCGAGCGCCTCGCGC
AGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCTCCGAGGTGAGCAGCTCTTCCTCTTACCTAGCTACCTCTTCGCTGCTG
CTGCGGTCCTTCCTTTGTCCGCTCGTCCGTCGGTATGCATACATACGCACGCTTGTTTGCTGACAGAATGCCTGAAATAC
CGGCTTGTTAATAAGTACTCATAACCAACTCCGTTGGTGAATAAAATGCCACAAACTCTGAAATTATGCAGTTACACAGA
ACTGAAAATTGGCCCATTCAGTTCTATACA------ATGTCTAGTTGAATGCGGTGGCTACCCTGTTGGAGCTCACTAGG
AGGGGCTGCTAGATTCTTCTTGGCAGCTATTCAAGCTGCGAGGAATGC--------------------------------
----------------------------TGTGTGCAGGTGCTAGTAAATAAAGTTTTTGCTCGTAATTTTGTCTTGGATT
GTCTGTTACATTGTTAGGTACACTTGTACACCTTTTCCAGAAACTGGAATTAAAAAAAAGTCCATCCTACTGTGATGTGG
CTTCTAATAAGAAGTTCCGCTGCTGAGGATTTAAATGCATTTCTAAAGAAATATTTACTGTTTCGTGA----CCTTATTA
CAGTTGATTCATGCCTAGCGTCGTCTTGGCTTTATCAC--------TATTTTTGGAGGGGCAGTCGGACAGTAGATGCTT
GGAGGCTGTATGCTTTTCCTCTTTGTCCTAAAATTTGGTTTCTGTTTTGTGGATGTGCAGGTCATCTACAACAGAGAAAC
CGACCAGAGCCGTGGATTTGGGTTTGTCACCATGAGTACAATTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCT
ACGTGAGTGAACTTGATG-----ATGGGACTGTTGTGCTTAAATATTCTGATTTCAGTTATTGGAACCTGTATATAATGG
GTCCTCCTGGTTTGCATTTGCATATGTTTCCTGTTATAGGTCCCATTTTAATTGATCTGTGTGTTAGTTATTATTACTCT
CCAAGTTCAAAGTC--GTGTGTAATTCATATGCTGCTTAAG-CATGTGCTAAAGAATGTACAAACATTT--GCTTTGCTG
ACTGACCTTACTGTGCG-CAGGATGTGAATGGGAGGCTGTTGACTGTAAACAAGGCAGCTCCTA----GAGGCGCCCGGG
TGGAAAGGCCTCCCCGTGATTCCGGCTCTTCATTCAGGATCTATGTGGGCAACCTGCCATGGCAAGTGGACGACTCTAGG
TTGGTGGAGCTGTTCAGCGAGCATGGCAAAGTGGTCGATGCTAGGGTCGTCTACGACAGAGACACTGGGCGCTCACGGGG
ATTTGGTTTCGTGACAATGGCGTCGCAGGAGGAGCTGGATGATGCCATCGCTGCCCTCGATGGACAGGTTAGTTTAGCAA
TCATTTGATTCCCCTATCACTTTTACATAC-CATGATAGCTGCATGAAACAAACCTTGTTTTACCAAGATAACCAATGCC
GCATTGG-TCTCACATTACTATCTGATGAATTCTACAGAGCTTGGAGGGGCGTGCCCTAAGGGTGAACGTCGCAGAGGAG
CGGCCACCTAGGAGGTTCTAA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr5A_1_TraesCS5A01G368400
CATTTTGTGTTCAATTTGTGTTTTTCACACAGGCCAAAATGCTTAACCTTTTCCCTCAAAATTTGCAGGTAGCATTTGGA
TGTGACTAAGAAAACATAAAAATTCTTGATTTGTTGACATTTAAAAAAATATTTTTGGGCCCAGGAGAATGTGCTCCCAG
GAGCCAAATTGAATTTCCGGATCGTCTAGTTCAGTTGCAACTAATAGAAGATTCGAGAGTGTAGGTGTCAATGAGTTTGT
TCTTGATTTCTTTCCTTTCCCTAGGGAGTTGGTACTGCTTATAGTTTGTTCATTCTTCAGTTGTTATTTTCATCATTCTT
GTCCTTTTTAAAGTTTTTAATTGGTCAAAGTGATGGGTGCTCCATGTAACATGCCATCACTTCTATTGTCTTGGCGATCA
TCTTTTCATGCAATGCAAATGACCATCGCTAGAATACACATGAATATCAACATATTTTTCATCTATTCCATTTCATTCTG
TATATGACTGGAAACGTGGAATGAAAATGTTTAACTTTATCTTTCGTCCCTTAACTATTTGAGTCATGCGGGTCTCATCC
CTCAACTTCAAACAAGACAACTTGAAACTTCAAATACACAGGCGTCACATAAGATTCGAATGAACGGGGCATAAAAACGT
TGAACTATGCTATGCGTTGTTGCTTTATAGCGATGATGGTGAAGCCCGGCCGCAAGGTCTTATAGAGAAGAAAAAGAAAC
TTACTATCAACTTTGAACTTGTTTTTAGTTTTT-TTTTGAGACAATTGAACTTGTTTTTAGTGTCGCTACCAACTTTGAA
CTGTATTCTTATAAACCAAAATGGTGGAAAGCAGCCTGGCCCGGCCCGGTCCAGCCCAGCCCAGAG------GCAGGATA
AGGGGTACGAGG---------GAAGAGGGAAAATATAAAAACAAAATCCCGCAAAATCCTCACTCTCTTTCCTT------
---CCTTCTCCTCCCCAAACCCAGAAAATCCCCTTATCCCCTCTCCCC---CTGCTTCTCGACCGTCCATGGCGATGGCC
T------------CCTCCGTCGCCGCGGCGTCCCTCCGAGCGCTCGCCGGCGCCTCCCCGGCCCCGCTCCCGAAGCCGTT
CCTCGTGCTGCTCTCCCCGGCGCCCCCGCGCCGCCTCGGCCTCGGCCTCCGCGCCGCCCGCCCGCGCGGCCCGCTCGCCC
CGCTCGCCTCCTCTGACTCCTTTTTCGAAACCTCCGCGGCCGTCGACGTCGCCGAGCCGGAGGACGAGGCCCTGGAGGCC
GTCGCGGAGGAGGAGCCCGCCGTGGCCGAGGAGGA---GGAGGATGTGGCGGCCGAGGAGGAGGAGGTGGAGGAGGTCGG
GGAGTACGTGGAGCCGCCGGAGGAGGCCAAGGTGTACGTCGGCAACCTGCCCTACGACGTCGACAGCGAGCGCCTCGCGC
AGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCTCCGAGGTGAGCAGCTCTTCCTCTTACCTAGCTACCTCTTCGCTGCTG
CTGCGGTCCTTCCTTTGTCCGCTCGTCCGTCGGTATGCATACATACGCACGCTTGTTTGCTGACAGAATGCCTGAAATAC
CGGCTTGTTAATAAGTACTCATAACCAACTCCGTTGGTGAATAAAATGCCACAAACTCTGAAATTATGCAGTTACACAGA
ACTGAAAATTGGCCCATTCAGTTCTATACA------ATGTCTAGTTGAATGCGGTGGCTACCCTGTTGGAGCTCACTAGG
AGGGGCTGCTAGATTCTTCTTGGCAGCTATTCAAGCTGCGAGGAATGC--------------------------------
----------------------------TGTGTGCAGGTGCTAGTAAATAAAGTTTTTGCTCGTAATTTTGTCTTGGATT
GTCTGTTACATTGTTAGGTACACTTGTACACCTTTTCCAGAAACTGGAATTAAAAAAAAGTCCATCCTACTGTGATGTGG
CTTCTAATAAGAAGTTCCGCTGCTGAGGATTTAAATGCATTTCTAAAGAAATATTTACTGTTTCGTGA----CCTTATTA
CAGTTGATTCATGCCTAGCGTCGTCTTGGCTTTATCAC--------TATTTTTGGAGGGGCAGTCGGACAGTAGATGCTT
GGAGGCTGTATGCTTTTCCTCTTTGTCCTAAAATTTGGTTTCTGTTTTGTGGATGTGCAGGTCATCTACAACAGAGAAAC
CGACCAGAGCCGTGGATTTGGGTTTGTCACCATGAGTACAATTGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCT
ACGTGAGTGAACTTGATG-----ATGGGACTGTTGTGCTTAAATATTCTGATTTCAGTTATTGGAACCTGTATATAATGG
GTCCTCCTGGTTTGCATTTGCATATGTTTCCTGTTATAGGTCCCATTTTAATTGATCTGTGTGTTAGTTATTATTACTCT
CCAAGTTCAAAGTC--GTGTGTAATTCATATGCTGCTTAAG-CATGTGCTAAAGAATGTACAAACATTT--GCTTTGCTG
ACTGACCTTACTGTGCG-CAGGATGTGAATGGGAGGCTGTTGACTGTAAACAAGGCAGCTCCTA----GAGGCGCCCGGG
TGGAAAGGCCTCCCCGTGATTCCGGCTCTTCATTCAGGATCTATGTGGGCAACCTGCCATGGCAAGTGGACGACTCTAGG
TTGGTGGAGCTGTTCAGCGAGCATGGCAAAGTGGTCGATGCTAGGGTCGTCTACGACAGAGACACTGGGCGCTCACGGGG
ATTTGGTTTCGTGACAATGGCGTCGCAGGAGGAGCTGGATGATGCCATCGCTGCCCTCGATGGACAGGTTAGTTTAGCAA
TCATTTGATTCCCCTATCACTTTTACATAC-CATGATAGCTGCATGAAACAAACCTTGTTTTACCAAGATAACCAATGCC
GCATTGG-TCTCACATTACTATCTGATGAATTCTACAGAGCTTGGAGGGGCGTGCCCTAAGGGTGAACGTCGCAGAGGAG
CGGCCACCTAGGAGGTTCTAATGAAGGTGTATTTGGCGGTGGACTACGACAAGATTGCTGCGTAAGAGACACGATAGCAC
GCCTGATACCGGCTTAGACCCCCCATCATCCTCCCATCCATCCTTGTGTCATGTCTTGTCTA---CTCTCTCCAGTGTTT
TTCTCTTTTGCTATCTGCCTCTTGCTTCCACGTTCTCAATCTGTCGATGCAATTCAAAAGTTTTGTCTGACATACTACGT
ATATTTAAGCCCCATGGGTGTGGTGTTA--CCCCGAGATTCATGCTCACCTGATATTGGAAAAGGATCCAAAACTCCCTT
ATGCGAAATGGATCTGAAATCTCCTTGTGACCCTGGTTGAATACCTATGACTACATGGTCGCATGCTTCACATCAAGCAG
TGCAATACCGATTCCCAGTCCTGATACTACAGGGAAACCTAGTGTACCTATATATGTGCGAGGGTTC-------------
-------------GACATTTTTGCTCCATCGCCAT---------------------------------------------
---GGGCCGATGCCCCTGGCGAA---------------------------------------------------------
--TCACCCCGGGTTCTGACGATGGCTCGTCGTGCATTGCCATAGCTACATGTTCAAGCTCCGTTGTGTCTACTCAAAGTC
TAGCTAGTGTCAACCGCCGGCTGGCAGACAGGTTTGTCCGCCGCAACTGGGTTACCAGAGCTGACGGCCAGTTCGCCTGG
TTTTTATTTGTCAGTCGCCC-GAGCCTAGGCTTGTCGACTCTCACCGGCACCGCCACTGTTGCCTGTGTTGTCGGCCAAG
ATTGCTGGGTCGATGCAAAAAGGCTGAATTATTACGACTTACAAACCACCTGCATCTTGAAATTTGAGTGGAAACTTTTA
AATGTATTTCGCTTAGAAACTGAAGGGTCTACGGGAAGAATCAGAGTTTTGAAGGGAAAATATTGAGTTTGTAGGCAAGC
TCATTTTTTTTCATCATTTCACGTTGAAACTTTTTATATTGAATTTACACCATTGCAAGTACCATGTACAAATTTGGGAC
TTTCCTGAGTTCATTTGATATACTTAAGAGTATATAGTGC
>chr5B_733
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTGAACTTGTTTTTAGTTTTTATTTTGAGACAATTGAACTTGTATTTAGTGTCGCTATCAACTTTGAA
CTGTATTCTTATAAACCAAA-TGGAGGGAAGCAACCTGGCCCGGCCCGGCCCAGCCCAGCCCAAAT------GCAGGATA
AGGGGTAGGAGGAGGGAGAGGGAAGAGGGAAAATATAAAAACAAAATCCCGCAAAATCCTCAGTC----TCTTT------
---CCTTCTCCCCCCCAAACCCAGAAAATCCCTTAT---CCCCTCCCC---CTGCTCCTCGACCGTCCATGGCGATGGCC
TCCTCCACCACCGCCTCCGTCGCCGCGGCGTCCCTCCGCGCGCTCGCCGGCGCCTCCCCGGCCCCGCCCCCGAAGCCGTT
CCTCGTGCTGCTCTCCCCGGCGCCCCCGCGCCGCCTCGGCCTCGGCCTCCGCGCCGCCCGCACGCGCGGCCCGCTCGCCC
CGCTCGCCTCCTCCGACTCCTTTTTCGAAACCTCCGCGGCCGTCGACGTAGCCGAGCCGGAGGACGAGGCTCTGGAGGCC
GCCGCGGAGGAGGAGCCGGCCGTGGTGGAGGAGGATGAGGAGGATGT---GGCAGCGGAGGAGGAGGTGG------TCGG
GGAGTACGTGGAGCCGCCGGAGGAGGCCAAGGTGTACGTCGGCAACCTGCCCTACGACGTCGACAGCGAGCGCCTCGCGC
AGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCTCCGAGGTGAGCGCTTCTTTCCCCTTCATGCACACACCTTG-GCCTCT
TTGCTAGGT---------------GCCTGTCTGTGTGCACACACACGTTGGCTCAGTCA---AGAGAATGCATCAATTCT
TCCGGGCCCTGATTATGTGCTTTGTTTATGCGCAACTG------------------------------------------
-----AAATTGTCACGTTCAGTCCTGGACGG-AATGATGCCTAACTGAATGTTGAGGCTCATATGGTGGA----------
----GCTGCTAAAATCTAGTTTGCCTCTTTGCAACCTGCTTGTGTGATAGGCTTGGATGCAGTAGGTTGGCCAGCGATGT
TATTTGATGGGGTGCATCGTGTTATAGTTGTGTGTGGAGGCCAGTCATTTCACGTCTTTATCAGAATT-ATGTCCATTAA
CCTGCTAGCGCATGCACACAAT----------GTTTTCAGAAACTGTGAAATACAGAGATATTTATC-------ATGTGG
TTTCTAATATGAAGTTTCGGTCCA----ATTAAGATGCATTTCCTTCCACGTAACAATGTATTATTTGCTGACCCTGTTA
CTGTTAATTCACGACTAGCGTGGTGTCGGCTTCATCAGTAATTCAGTATGGTTGGAGGGGCAGTCAGACAATGGTTGCTT
GGATACTGTATGCCTTTTCTCCCTGTTGTAATATGTAGTTTCTATTTTGTGGATGTACAGGTCATTTACAACAGGGAAAC
AGACCAGAGCCGTGGATTTGGGTTTGTCACCATGAGTACCATTGAAGAGGCTGAGAAGGCCGTGGAGATGTTCCATCGCT
ATGTGAGTG--------------------------------CATACTCTGTATTTACGTAATGGAACCTGCATAGAATGG
CTGCTTCCAGTTTGCATTTTC-TATGTTTCCTGTCATAGGGCATTAAT-------------------------------T
CCAATTTCAAAAGC--ATTTATAATTCATATGCTATGTAAG-CATGCTCTAAAGAATGCACCAAAATGTATGGTTTGCTG
ACTGACCTTTAACGTGGACAGGACGTGAATGGGAGGCTGTTGACTGTAAACAAGGCAGCTCCTA----GAGGCGCCCGGG
TGGAAAGGCCTCCCCGTGATTCCGGGTCTTCATTCAGGATCTACGTGGGCAACCTGCCATGGCAAGTGGACGACTCTAGG
TTGGTAGAGCTGTTCAGCGAGCACGGCAAAGTTGTCGATGCCAGGGTTGTCTACGACAGAGACACTGGGCGCTCACGGGG
ATTTGGTTTCGTGACAATGGCATCGCAGCCGGAACTTGATGATGCCATCGCTGCCCTCGATGGACAGGTTAGTT-AGCAA
TCATCTGATTGCCCTACCATTTTTACATAC-CGTGATAACTGCATGAATCGAACCTCGTTCTAGCGGGATAACGAATGCC
GTGTCGAGTCTCACATTACTATC---TGAATTCTGCAGAGCTTGGAGGGGCGTGCTCTGCGGGTGAACGTCGCGGAGGAG
CGGCCACCGCGGAGGTTCTAATGAAGGTGTATTTGATGGTGGACTACGACAAGATTGCTGCGTAAGAGACACGATAGCAC
GCCCAGTACCGGCTTAGACCC-----------CCCATCCATCCTTGTGCCATGTCTGCCTCCTCTCTCTCTCCAGTGTTT
TTCTCTTTTGCTATCTGCCTGTTGCTTCCACGTTCTCAATCTGTCGATGCAATTCAAAAGTTTTGTCTGACATACTACAT
ATGTTTAAGCCCCCCATATGGGGTGCGTCGCCCTGAGATTCGTGCTCGCCTGATGTGCGAAAAGGATCCAAAATCCCCTT
ATGTTATATGGATCTGAAATCTCCTTGTGACCCTGGTTGAATACCTATGTCTACATGGTCGCATGCTTCGCATCAAGCAG
TGCAATACCGATTCGCAGTCCTGATGCTA-AAGGGACCCTAGCGTGCATATATGTGTGGGGGTTGGGTGTTGCATCTGCA
ACTCAGATCTCGAGAAGTTTTTGCTCCATTGCCGCGAGTACATCGGGGCCAGCCTCCGTGCCAACTGCTGGCCATGGCGT
GCC-GGCCGATGTCCCTGGCGAAGTAGCGAACCACCCCAA---------GCCATGGCGCGTCGCGC--------------
--------------------------------GCATTGCC----------------------------------------
---------------------------------------------ACTGGGTTACCAGAGCTGACGGCCAGTTCGCCTGG
TTTTTATTTGCCGGCCGCCCTGAGCCTAGGCTTGTCGACTCTCACCCGCACCGCCATTGTTGCCTGTGTTATCGGCCAAG
ATTGTTGGGTCGATGCAAAAATGCCGAATTTTTACGACTTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr5D_808
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTATAAACCAAA-TGGAGGAAAGCAGCCTGGCCCGGCCCGGCCCAGCCCAGCCCAGCCCAGCCAGCAGGATA
AGGGGTACGAGGAGGGAGAGGGGGGAGGGAAAATAT-AAAACAAAATCCCGTAAAATCCTCACTC----TCTTTCCTTTC
CTCCCTTCTCCTCCCCAAACCCAGAAAATCCCTTAT---CCCCTCTCCCCGCTGCTCCTCGACCGTCCATGGCGATGGCG
TCCTCCACCACCGCCTCCGTCGCCGCGGCGTCCCTCCGCGCGCTCGCCGGCGCCTCCCCGGCCCCGCTCCCGAAGCCGTT
CCTCGTGCTGCTCTCCCCGGCGCCCCCGCGCCGCCTCGGCCTCGGCCTCCGCGCCGCCCGCCCGCGCGGCCCGCTCGCCC
CGCTCGCCTCCTCCGACTCCTTTTTCGAGACCTCCGCGGCCGTCGACGTCGCCGAGCCGGAGGACGAGGCC---------
GTCGCGGAGGAGGAGCCGGCCGTGGCCGAGGAGGA---GGAGGACGT---GGCAGCGGAGGAGGAGGTGGAGGAGGTCGG
GGAGTACGTGGAGCCGCCGGAGGAGGCCAAGGTGTACGTCGGCAACCTGCCCTACGACGTGGACAGCGAGCGCCTCGCGC
AGCTCTTCGAGCAGGCCGGCGTCGTCGAGGTCTCCGAGGTGAGCGCTTCGTCCCCCTTCATGCACACACACCTTGCCTAT
TTGCTAGGT---------------ACTTGTCTGTACGCACACACACGTTTACTCAGTCA---ACAGAATGCCTCAATTCT
TCCAGGCCCT----------------------------------------------------------------------
-----------------TCAGTCCTGGACGTAAATGATGTCTAACTGAATATTGT-------------------------
----GCTGCTAGAATCTAGTTTGCCTCTTTGCAGGCCGCTTGTGTG--------------AGTAGGTTGGCTGGCCATGC
T---------------------------------------------ATTTCAAGTCTTTATCGGAATTTATGTGCGTTAA
ACTGCTA-CGCATGCACATAAT----------TTTTTCAGAAACTGTGAAATACAGAAATCTTAATC-------ATGTGG
TTTCTAACATGAAGTTTCGGTCCA----ATTTAGATGTATTTCCTTCCGCGTAACAATGTATTAGTTGCTGGCCTTGTTA
CTGTAAATTCAGGCCTAGCGTGGTATTGGCTCCAT--------CAGTATGGTTGGAGGGGCAGTCAGATAGCGGTTGCTT
AGATAGTGTATGCCTTTTCTCTCTGTTCTGAAATGTAGATTCTGTTTTGTGGATGCACAGGTCATTTATAACAGGGAAAC
AGACCAGAGCCGTGGATTTGGGTTTGTCACCATGAGTACCATTGAGGAGGCTGAGAAGGCCGTGGAGATGTTCCATCGCT
ATGTGAGTGTATTCGATAACTTCATGGGACGATTTTCCTTACATACTCTGCATTTACCTACTGGAACCTGCATAGAATGG
CTGCTACCAGTTGGCATTTTG-TATGTTCCCTGTCATAGGTCATTAAT-------------------------------T
CCCAGGTCAAAATC--ATTTGTGCTT----TGCTATGTAAG-CATGCTCTAAAGAATGTATAAAAATGTATGCTTTGCTG
ACTGACCTTTAACGTGGACAGGACGTGAACGGGAGGCTGTTGACTGTAAACAAGGCAGCTCCTA----GAGGCGCCCGGG
TGGAAAGGCCTCCCCGTGATTCCGGGTCTTCATTCAGGATCTACGTGGGCAACCTGCCATGGCAAGTGGACGACTCTAGG
TTGGTAGAGCTGTTCAGCGAGCACGGCAAAGTTGTCGATGCCAGGGTTGTCTACGACAGAGACACTGGGCGCTCACGGGG
ATTTGGTTTCGTGACAATGGCATCACAGCCGGAACTTGATGATGCCATCGCTGCCCTCGATGGACAGGTTAGTT-AGCAA
TCATTTGATTGCCCTACCATTTTTACATAC-CATGATAACTGCATGAATCGAACCTCGTTTTAGTGGGATCATTAATGCC
GTGTCGAGTCTCACATTACTATC---TGAATTCTGCAGAGCTTGGAGGGGCGTGCTCTGCGGGTGAACGTTGCGGAGGAG
CGGCCACCACGGAGGTTCTAATGAAGGTGTATTTGATGGTGGACTACGACAAGATTGCTGCGTAAGAGACACGATAGCAC
GCCCAATACCGGCTTAGACCC-----------CCCATCCATCCTTGTGCCATGTCTGCCTCCTCTCTCTC--CAGTGTTT
TTCTCTTTTGCTATCTGCCTGTTGCTTCCACGTTCTCAATCTGTCGATGCAATTCAAAAGTTTTGTCTGACATACTACAT
ATGTTTAAGCCCCCCATATGGGGTGTGTTGCCCCGAGATTCGTGCTCGCCTGATATGCGAAAAGGATCCAAAATCCCCTC
-----ATATGGATCTGAAATCTCCTTGTGACCCTGGTTGAATACCTATGTCTACATGGTCGCATGCTTGGCATCAAGCAG
TGCAATACCGATTCCCAGTCCTGATGCTA-AAGGGACCCTAGCGTGCCTATATGTGCGCGGGTTGGGTGTTGCATCTGCA
ACTCAGATCTCGAGAAATTTTTGCTCCACTGCCGCGAGTACATCGCGGCCAGCCTCCGTGCCATCTGCTGGCCATGGCAC
GCCGGGCCGATGTCCCTGGCGAAGTGGCGAACCACCGCACGATCTGCTGGCCATGGCGCACCGGGCTGATGTCCCTGGTG
AGTCACCCCAGGTTCCGGACATGGCTCATCATGCATTGCC----------------------------------------
---------------------------------------------ACTGGGTTACCAGAGCTGACGGCCAGTTCGCCTGG
TTTTTATTTGCCGGCCGCCCTGAGCCTAGGCTTGTCGACTCTCACCCGCACCGCCATTGT--------------GCCAAG
ATTGCTGGGTCGATGCAAAAATGCTGAATTTTTACGACTTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr5D_2172
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GAGAAGGCTGTGGAGATGTTCCATCGCT
ACGTGAGTGAACTTGG-G-----ATCGCACTATTGTGCTTAAATATTCTGATTTCAGTTAATGAAACATGTATATAATGG
ATGCTCCTCGTTTGCATTTGCATATGTTTCCTGCTATAGGTCCCATTTTAATTGATT--TGTGTTAGTTATTATTACTAT
CCGGGTTCATAGTCATGTGTGTAATTCATATGCTGCTTAAGCCATGTGCTAAAGAATGTACAAACATTT--GCTTTGCTG
GTTGACCTTACCGTGGG-CAGCATGTGAATGGGAGGCTGTTGACTGTAAACAAGGCGGCTCCTAGCTAGAGGCGCCCCGG
TGGAAAGGCCTCCCCGTGATTCCGGGTCTTCATTCAGGACTTATGTGGGTAACCTGCCATGGCAAGTGGACGACTATAGG
TTGGTGGAGCTGTTCAGCGAGCATGGCAAAGTGGTCGATGCCAGGGTCGTCTACGACAGAGACACTGGGCGCTCACGGGG
ATTCGGTTTGGTGACAATGGCGTCGCGGGAGGAACTGGATGATGCCATCGCTGCCCTCGATGGACAGGTTAGTTTAGCAA
TCATTTGATTCCCCTACCATAGTTACATAC-CATGATAACTGCAGGAACCAAACCTTGTTTTACCAAGATAACCAATGCT
GCATTGC-TCTCACATTACTATGTGATGAATTCTGCAGAGCTTGGAGGGGCGTGCCCTATGGGTGAATGTCGCAGAGGAG
CGGCCACCGCGGAGGTTCTAATG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>chr5B_2576
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GACTCTTGG
TTGGTGGATCTATTCAGCGAGCACGGCAAAGTGGTCGATGCGAGGGTTGTCTACGATAGAGACCTTAGGTGCTCACTGGG
ATTCGGTTTCGTGACAATGGAGTCATAGGAGGAATTGGATGATGTCATCGCCGCTCTCGATGGACATGCTAGTTTAGCAA
TCATTCGATTCCCCTACCATTTTTAAATTTACATGATAAGTGCACAAGTCAAACCTTGTTTTAGCGAGATAACCAATGCT
GCATTGCGTCTTACACTACTATCTAATGAATTATGAAGAGCTTGGAGGGCCGTGCAGT----------------GAGCAG
CGGCCACTGCAGAGCTTCTAATCAAGGTGCATTTGGCGGTGGACTACGACAAGGTTGCTGCGTAAGAGACACGATGGCAC
GGCTGATACCGGCTTAGACCCTCCATCATCCTCCCATCCATCCTGGTGCCATGTCTTGTCTA-CTCTATC--AAGTGTTT
TTCTCTTTTGCTATCTGCATGTTGCTTCCACGTTCTCAATCTGTCGATGCAATTCAAGAGTTTATTCTAACATACTACAT
ATGTTTAAGCCCCATGGGTGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-------------------------------------------S-------------S----------
--------------------S---S------------------------S---------------S--------------
-----------------------------------------------------------------SSSS--S--------
--------------------------------S-SSSSS--S--------------S-----------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
-----------------S-----------------------------SSS---S-S------------------------
--------------------------------------------------------------------------------
--------------------------------------------SSS------S-S-S-S-SSSS--SS---SSSSSSSS
S---SSSSSSSSSSSSSSSSSSSS-S-S---S-------S---S---SSS---SSS-SSSSS-----------S--S-SS
SSSSSSSSSSSSSSS-SSS-S-SSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS------S-S-S------S--SS--S-------------SS------SS------SSSS--S----SSSSSSSSSS
SSSS---------S---SS--S--SS--S-S--------SS-SSSSSS--------------------------------
----------------------------------SS-SS--S---S-S-SS-SS-S--SS---S-----SSSSSS-SSSS
SSSSS-SS-SSSSSS-SS--SSSSSSSSSSSS----S---------SS-SSS-S-S---SSSS-SS-SSSSSSS------
S--------S------S--S-S-SSSSS-----S---------SSSSS-SS--SSS-SSSS--S--SS--------S---
-S---S-----S---------S--S-------S----S-----------SS--------------S------S-S-----
---SS--------S---S----S---S-------S-S-------------------S--------S--------S-----
S--------------------------------------S----------------------------------------
-------------------------------S----------------------------S-------------------
S-S-----S-----------------------------------------------SSS-------------------S-
--------------------------------------------------------------------------------
-----------S---S----------------------------------------------------------------
-------------------------S------------------------------------------------------
-----------------------------------------S--------------------------------------
---------------------------------S----------------------------------------------
----------------S--S------------------S---------S-------------------------------
------S---------------------------S------------------------S--------------------
--------SS----------------------------------------------------------------------
---------------------S--------------------------S-------------------------------
--------------------S---------------------------------------------------------S-
--S-----------------------SS-------------S-----S--------SS---------------SS-----
---SS-S------------------------------------------S-------------------S----------
-------------------------S---S-S--S-S-----S--S-------S------S-SSSSS-------------
---------------S-------------S---SS---------------------------------------------
------------S-------------------------------------------------------------------
---------S-----S-SSS-------S--S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
----------S-S-S-------------------------------S---------S-------------S---------
---------------------S--------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_687
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TAGCGATGATGGTGAAGCCC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_1544
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CGTCCGTCGGTATGCATACA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>forward_1518
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CCTAGCTACCTCTTCGCTGC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>reverse_3494
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATGTGCGAGGGTTCGACATT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
