>input_sequence_40979
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--------------------------------------------------------------------------AT----
--GGAGCGGCTCCAAGAAACACCCCACGGAGATGGGAATCTCAAGGCCGCCCCAGATCCCGGACACGGAGGCGGCAATGG
CGGCTGCATCGCTCCCAGTGGCACCCTCCCCTGCGGCTGGCTCGGCCGCCTGTCCCGCGAGCTGCATTGGAGCTTCGTGC
TCGCCGTCGTCGCCGTCTACGGCGCCTGCCAGGGCGTCGGCTCCTCATTCGGCAGCGTCGCCGCGGGGTACTACTGGAAG
GACGTGCAGCGCGTGCAGCCGGCCGCCTCGCAGTTCTACCAGGGCGTCGTCAACGTTCCCTGGGTCGTCAAGCCCCTCTG
GGGCCTCTTCACCGACGTCGTCCCCGTCGCCGGCTACCGCCGCCGCCCGTACCTCCTCCTCGCAGGTGAGCCAATGCTTT
GCTTGCT-ATGGTCAACGTCGTTCTGAATCTGCTCGCCTTCTTAAA---CTGTCTTGATCCATGTATTGTAACCAACTAT
GTAAAGGCGTCATGGGCGTGTCATCCATGCTCACGCTTGCTCTGCGCCGCACGCCGGCGATCGCACCGGCATTGGTGGCG
TTCACGACGCAGGCCGCGGGCGCCGCCATAGCCGACGTGGTGGTGGACGCCATGGTCGCGCAGAACAGCATAAGCCACCC
TCCGCTCGCCGCCGACATGCAGAGCCTGTGCGGGTATTGCTCCTCCGCCGGCGCATTGGTGGGGTACTCCATCAGCGGTC
TCGTCGTCCATGCAATAGGTTCCCAGGTCTGAAGTCTGAACTGAACATTTCCTGAGAGAAGATGGATGGTATTGGT----
-----------AGATTCCAATGTTCTTGCCATGTTCATTTGATCTT----TTCAGGGGGCTCTTGGCTTGCTGAGCATCC
CCTCCGTGCTCGTATTTTCGGCCGGGATTCTCGTCAAGGAGGACCGGGCCAAGGATTTCGAGTACAACCAGGTGAGCTCA
GGCTTCAGAAGCTGCCAATTAAATACAGTTACAAACATGA--CA----CTTTCAAGGTTGTTAACTGCAATATAT-----
TCAGGTTCACAGGAAGTTCTACGAAGCAGTTGAATCAATGTGGGCAACATTGAAGTGCCCGCAGGTCTGGAGGCCGTGTG
TTTACATGTTCTTAATGTTCGTGCTAAGCCCG----GACATCCAAGGAGGGCTGTTCTACTGGTACACAGATTCGAGTAC
CGGACTCGCATTTTCCGAGGTAG--------TT---TCTGCCAC-AAAAGTTCTTCAGATGCATGG--------------
--------------------------CAAAGATCGACAAGAACTGATGTGGGCTTCCATAA----------TCTGCAGGG
ATTCAT--TGGTCTCATCTACTC---GATAGGCTCAGTCGGGTCGCTGCTCGGCGTCCTGCTCTACCAGAACATGCTCAA
GGACTACCCGTTCCGCGGCCTGCTGCTATGGGGCCAGCTGCTGGCCTGCCTGTCCGGGATGATCGACCTGGTGCTGGTCA
CCAGGCTGAACCTGAGGCTCGGCATGCCGGACTACCTCTTCGCCGTGATGGACAACGGCGTGTCCCAGCTGATCGGCCAG
CTGAAATGGCTGCCGCTCCTCGTGCTCTGCTCCAAGCTCTGCCCCGTGGGGATCGAGGGCACCTTCTTCGCCCTGCTCAT
GTCCATCCAGAACCTCGGCCTGCTCATGTCCGCCTGGTGGGGCGGCCTCCTGCTGCACGCGCTGGGCGTGACGCGGACCG
AGTTCGGGAACCTCTGGGTGGCCGTGCTGGCGAGGAACGCCATGCGGCTGCTCCCGCTGGCGTTCCTGTTTCTGGTGCCT
CGGAGCGACCAGAACTCGACCATCCTTCCCGCGGAGATGCTGCTTGCGGACGGAGGTTCCCCGGGGGATGTGGAACCAGG
GGCGTCAGGTGCCATCGAGTTTTCTGTCCTCCATGGAGATGAACATACTGAATTTGTTGAGACTGAGGAAGAGGAACTAG
AGCTGACCCCGCTCATGGAGAAGATCTGA---------------------------------------------------
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>chr2A_1_TraesCS2A01G488600
ATGCAATCTTTTTGTTAGGTTAAAATGTTGAATGTAGTCTTGCACTGTAATGCCATTTACATATCGTTTGGCATCCATCA
TTTGGGTCAGAACTCGCTGAATTCATTTGCCAATTACGACACCAACATGTTTGGCTCTCCCAGATTTGGGTGTCGGAAAT
CACTCCACAATTCCAGATGATTGAAACCGTATGTAAACCAAATCCCATCCAACAAGCTGTCATTTCCCAAATCAGCTCGC
CTCGGACTCCCTTGATTCCTGCTCATCTCGCT--------CCCGCCGCCCAGGCAACCCACCGGCCACCGCATCTCGTCT
CGCCCCCAACCCCCTCTCCCCTTGCCCCCGACGCGCCGCCTCCCAGGGAACCCGCGCCGCCG------------------
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------------------------------------------------------------------------------CT
GTCCCATAAGACGCCTCCTCAAATTGTACTCCCTCCACCATCGGTGACGGTGCAAAATACCGTCAGATCCCCCAGTGGGG
GTCCAAGCGCAGCTGGAAGTCTTAGATCGGAGATCACACGAGGGGTTTACCCAGGTACGGGCCTCCGGATAGTAATACCC
TACATCCTACTTGTTTTGGTTATTCATGGTGGTGTAGAAATTGATAGTATGTTGTTTCTGTTCGACTATGTTTGTGTAGT
CCTTTCTTTGGCATTGTATATCATATTCTCTCCTAATTA--AATCGCATGCGACGGGTGGAACACAAAATTTATGCTCTG
TAGGTGATGAAGACAACTGTAACAGTAGACGTGATCTTTCTCT-AAAAAACAGTAGTACACGTGACGACGTCGGAGCCTG
AACCGGCCGGTGCATATTCTATGC-TCCACCACCTAAAGCTTTTAA---ATCAAGACAAATAAAGTCAAATACTGAGCAC
AGATCAAGAAGCGCCA---TCCTGATCCGTGCATTGTACCTGAGCATCCTCTCTGAGCAAGCAACGGCCGGGACCTTCAT
TCTCCCGTTGCAAATCATGGTGTTTTCTCCATAGATTCCAAGAAACCACGCAGGAAAGGAATCGCTCTGTTCAGAT----
--GGAGCGGCTCCAAGAAACACCCCACGGAGATGGGAATCTCAAGGCCGCCCCAGATCCCGGACACGGAGGCGGCAATGG
CGGCTGCATCGCTCCCAGTGGCACCCTCCCCTGCGGCTGGCTCGGCCGCCTGTCCCGCGAGCTGCATTGGAGCTTCGTGC
TCGCCGTCGTCGCCGTCTACGGCGCCTGCCAGGGCGTCGGCTCCTCATTCGGCAGCGTCGCCGCGGGGTACTACTGGAAG
GACGTGCAGCGCGTGCAGCCGGCCGCCTCGCAGTTCTACCAGGGCGTCGTCAACGTTCCCTGGGTCGTCAAGCCCCTCTG
GGGCCTCTTCACCGACGTCGTCCCCGTCGCCGGCTACCGCCGCCGCCCGTACCTCCTCCTCGCAGGTGAGCCAATGCTTT
GCTTGCT-ATGGTCAACGTCGTTCTGAATCTGCTCGCCTTCTTAAA---CTGTCTTGATCCATGTATTGTAACCAACTAT
GTAAAGGCGTCATGGGCGTGTCATCCATGCTCACGCTTGCTCTGCGCCGCACGCCGGCGATCGCACCGGCATTGGTGGCG
TTCACGACGCAGGCCGCGGGCGCCGCCATAGCCGACGTGGTGGTGGACGCCATGGTCGCGCAGAACAGCATAAGCCACCC
TCCGCTCGCCGCCGACATGCAGAGCCTGTGCGGGTATTGCTCCTCCGCCGGCGCATTGGTGGGGTACTCCATCAGCGGTC
TCGTCGTCCATGCAATAGGTTCCCAGGTCTGAAGTCTGAACTGAACATTTCCTGAGAGAAGATGGATGGTATTGGT----
-----------AGATTCCAATGTTCTTGCCATGTTCATTTGATCTT----TTCAGGGGGCTCTTGGCTTGCTGAGCATCC
CCTCCGTGCTCGTATTTTCGGCCGGGATTCTCGTCAAGGAGGACCGGGCCAAGGATTTCGAGTACAACCAGGTGAGCTCA
GGCTTCAGAAGCTGCCAATTAAATACAGTTACAAACATGA--CA----CTTTCAAGGTTGTTAACTGCAATATAT-----
TCAGGTTCACAGGAAGTTCTACGAAGCAGTTGAATCAATGTGGGCAACATTGAAGTGCCCGCAGGTCTGGAGGCCGTGTG
TTTACATGTTCTTAATGTTCGTGCTAAGCCCG----GACATCCAAGGAGGGCTGTTCTACTGGTACACAGATTCGAGTAC
CGGACTCGCATTTTCCGAGGTAG--------TT---TCTGCCAC-AAAAGTTCTTCAGATGCATGG--------------
--------------------------CAAAGATCGACAAGAACTGATGTGGGCTTCCATAA----------TCTGCAGGG
ATTCAT--TGGTCTCATCTACTC---GATAGGCTCAGTCGGGTCGCTGCTCGGCGTCCTGCTCTACCAGAACATGCTCAA
GGACTACCCGTTCCGCGGCCTGCTGCTATGGGGCCAGCTGCTGGCCTGCCTGTCCGGGATGATCGACCTGGTGCTGGTCA
CCAGGCTGAACCTGAGGCTCGGCATGCCGGACTACCTCTTCGCCGTGATGGACAACGGCGTGTCCCAGCTGATCGGCCAG
CTGAAATGGCTGCCGCTCCTCGTGCTCTGCTCCAAGCTCTGCCCCGTGGGGATCGAGGGCACCTTCTTCGCCCTGCTCAT
GTCCATCCAGAACCTCGGCCTGCTCATGTCCGCCTGGTGGGGCGGCCTCCTGCTGCACGCGCTGGGCGTGACGCGGACCG
AGTTCGGGAACCTCTGGGTGGCCGTGCTGGCGAGGAACGCCATGCGGCTGCTCCCGCTGGCGTTCCTGTTTCTGGTGCCT
CGGAGCGACCAGAACTCGACCATCCTTCCCGCGGAGATGCTGCTTGCGGACGGAGGTTCCCCGGGGGATGTGGAACCAGG
GGCGTCAGGTGCCATCGAGTTTTCTGTCCTCCATGGAGATGAACATACTGAATTTGTTGAGACTGAGGAAGAGGAACTAG
AGCTGACCCCGCTCATGGAGAAGATCTGACGACTCGCTGAAACAATTGGTCAATTACTTAACCAAATTGGATAGGAACGG
CTGACGATACATCAAAGCAGCCAAAGAAATCGTCCATGAATATCTTGTAGCAGTAGACGAAAAGATGGACTAAACGGACA
TATTCCACCACCCGGCCTTCTTCTGCTACGAGCAAAGAAAAAAAAAGAGATCCATGAGCACTAGCACTCATGACATATTT
TTATAGATGAAGCCCATTGAGGTGAGGCACCAGAAATTCGCTCCCGACGGGATTCAAACTCTGGGCGCAGGCTACACCAC
TGTGCACCTTTGCCACTAGGCTACTGACGAGACAACCCACTATTTGGATACCCAAATCTCCACCTTCTTGCGGAACTTCG
GGATAACTTCAGCTTTGACACAGACATCACCAAGCCCATCTCCAGGTAATTCTTCATGTGAAAGAGCACACGAAAGATTG
TATTTAGCAACATGTTTTAGTTTCTGTACACAACATGGATTTCGATAGACTTGTGGAAATGGGAGATTGACTTCATTCAT
TTGTTAGAACAAATATGAATAAGTGTTCGTCGTGAATCTTCATATTTGTTGTTCTTTGCTTTGTGCTTTGGAGTAGTTTT
TCTCTGCACAAAGTGACAGAGACATGTATGAAAGAATAGATTGCCAAACAAGTTTTGCTAAATCTCAGTCTATTGAGACT
TGGTTATGTCTCAGTTGATATTATATCCATGAGATTTTACATTGTGATTCGCATAATTTTTCTTTACAGTTTTTTCTTTA
TTACAAGTTTGAACACTTGACTAAAACTTGGTTAAGTCTTAGTCGACTAAAACCTAGCCACAACATTGCCAAAACAATAG
AGGTACTCAAATATAAGGGGCACAGTAAAGTGATTCTTGAACCAGACCGACATACACTGTTCGGGTGAGCAACCCGAGGT
GCACTGTAGAGTGAACTGGAAGGGTGTTATGACAAGTCTAACGGGCCGACCCAAATGGACACATTTTTT
>chr2D_1
ATGCAATCTTTTTGTCAGGTTAAAATGTTGAATGTAGTTTTGCACTCTAATGACATTTAAAGGTTGTTTGGCATCCATCA
TTTGGGCCAGAATTCGCTGAATTCATTCGTGAATTCCGACACCTACATGTTTGGATGTCCCAA--TTGGGTGTCGAAAAT
CATTCCACAATTCCAGATGATTGAAACCGTATGTAAACCAAATCCCATCCAACAAGCTGTCATTTCCCAAATTAGCTCGC
CCCCGACGCCCTCTCTTCTCGCTCATCATGCTCCTGCCGCCCCGCCGCCTAGGTAACCCACCGGCCACCGCATCTCGT-T
CGCCTCGAACCCCCTCTGATCTCTCCCCCGACGCGCCGCCTCCTAGGGAACCCAACGCTGTTGTTGTCAGAGTGCGTTCT
CTAGACACCAGGGATCGAGGATACCATGTATCTGTGAGTTCGACCAGGGGCTAAAACCCCTAGTCAATCAACTCTCAAAG
GCACACAGAAAGACAAGGACGCAAGGGATTTTATACAGGTTCAGGTCGCCATCTTGACGTAAAACCCTGCGTCCTGTTGG
TATTTGATATAATCGGGAGAGTACAAGTGCTCAAGTGTTACGAAAGAGGTGGTCGGGGTACTAACTAGAGTGCCAGATCA
CTCCTAACTCTCTCCTCTCTCATGCTTTCTTCTAGTCCTACTTGAAGATGAGTGTAGTGATATGTGTCTCCCTATTCCTG
CTTGTCTTCCTTTCGACCACGGTCCTCCCCTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCACACTTGGTCTGTAAATAAATACAAGGCAATATA
CAAAATTATAGTCGGCTCAATTAGTCCACTTGCTCTTGACGAACGACAGTAGATGAGCTGACACTGCTCAGTGTCAGGTG
CTCAAGTGCCTTCCCCAACGTGACGCGCCGCACCGCCCTTCTCCTGCTTTACACCGTTCCAGCATTCCATCTTGTCATAC
ACCCCTCGGGTCGTTGTGAACTTGTGATGATGACCCTCTACGTAGCCCTACGTCGGGCTATACTGGGTAGACTGACCAGG
CATTTAATGATCGGGGAATCATCCCTTAACTGCGTCATGACTGACGTCAAGGTCCTCCTCGAGGATCTTCTGCGACTATT
TTTCTCTAGGTTTGTGTTTTATGTCTCTCAAATTAACCCTTTTTCTACTGTATCATTTTCCCGAACTTGGCTAGCATTGT
ATAATGTTGGATTTTTTTTCCGAGCAGGCACGTAGTCACAACATATTGAGTATACCCCATGATTTAATGTTCCGTCAACT
GTCCCGTAACACCCCTCCTCAAACGGTACTCCCTCCGCCATTGATGACGGTGCAAAATACCGTCAGATCTCTCGGTGGGG
GTCCGAGCGCAGTTGGAAGTCTTAGATCGGAGATCACACGAGGGGCTTGCCCAGGTTCGGGCCTCCGGAGAGTAATACCC
TAC-----------------------------------------------------------------------------
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>chr2B_566
TGGGT---------------------------------------------------------------------------
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-----------------------------------AGAAATTGATAGTATGTTC--------CGACTATGTTTGTGTAGT
CCTTTCTTTGACATTGTATATCATATTCTCTCCTAATTATAAATCGCATGCAGCGGTTGGATTAAAAAAAA-ATGCTCTG
TAGGTGATGAAGACAATTGTAACAGTACACGTCATCTTTCTCT-AAAAAACAGTAGTACACGTGACGACGTCGAAGCCTG
AACCAACTGATGCATATTCTATACTTCCACCACCTAAAGCTTTTGT---ATTAAGACAAATGAAGTCAAACACTGAGCAC
AGATCAAGAAACGCCA---TCCTGATCCGTGCATTGTACCTGTGCATCCTCTCTGAGCAAGCAATGGCCGGGACCTTCAT
TCTTTCGGTGCAAATCATGGTGGTTTCTCCATAGATTCCAAGAAACCACACAGGAAAGGAATCACTCTGTTCGGAT----
--GGAGCAGCTCCAAGAAACACCGCACGGAGATGGAAATCTCAAGGCCGCCCCAGATCCCGGACTCGGAGGCGGCAATGG
CGGCTGCATCGCTCCCAATGGCACCCTCCCCTGCGGCTGGCTCGGTCGTCTGTCCCGCGAGCTGCATTGGAGCTTCGTGC
TCGCCGTCGTCGCCGTCTACGGCGCCTGCCAGGGCGTCGGCTCCTCATTCGGCAGCGTCGCCGCGGGGTACTACTGGAAG
GACGTGCAGCGCGTGCAGCCGGCCGCCTCGCAGTTCTACCAGGGCGTCGTCAACGTGCCCTGGGTCGTCAAGCCCCTGTG
GGGCCTCTTCACCGACGTCGTCCCCGTCGCCGGCTACCGCCGCCGCCCGTACCTCCTCCTCGCAGGTGAGCCAATGCTTT
GCTTGCT-ACGGTCAACGTCGTTCTGAATCTGCTCGCCTTCTTAAGCTGCTGTCTTGATCCATGTATTGTAACCAACTAT
GTAAAGGCGTCATGGGCGTGTCGTCCATGCTCACGCTTGCTCTGCGCCGCACGCCGGCGATCGCACCGGCATTGGTGGCG
TTCACGACGCAGGCCGCGGGCGCCGCCATAGCCGACGTGGTGGTGGACGCCATGGTCGCGCAGAACAGCATAAGCCACCC
TCCGCTCGCCGCCGACATGCAGAGCATGTGCGGGTATTGCTCCTCCGCCGGCGCATTGGTGGGGTACTCCATCAGCGGCC
TCGTCGTTCACGCAATAGGTTCCCAGGTCTGAAGTCTGAACTGAACATTTCCTGAGAGAAGATGGATGGTATTGGTAGAC
ATTCAACATACAGATTCCAATGTTCTTGCCATGTCCATTTGATCTT----TTCAGGGGGCTCTTGGCTTGCTGAGCATCC
CCTCCGTGCTCGTATTTTCGGCCGGGATTCTTGTCAAGGAGGAGCGGGCCAAGGATTTCGAGTACAACCAGGTGAGCTCG
AGCTTCAGAAGCTGCCAATTAAATACAGTTATGAACATGCATCA----CTCTCAAGGTTGTTAACTGCAATATAT-----
TCAGGTTCACAAGAAGTTCTACGAAGCAGTTGAATCAATGTGGTCAACATTGAAGTGCCCGCAAGTCTGGAGGCCGTGCG
TTTACATGTTCTTAATGTTCGTGCTAAGCCCG----GACATCCAAGGAGGGCTGTTCTACTGGTACACAGATTCGAGCAC
CGGACTCGCATTTTCCGAGGTAG--------TT---TCTGCTAAAAAATGTTCTTCAGATGCATGCTAGAAGCTAGAATT
ACATAGACTACTAA---AACACACGACAAAGATCGAGAAGAACTGATGGATGGGATGGGACCTGCCATTTTTCTGCAGGG
ATTCAT--TGGTCTCATCTACTC---GATAGGCTCAGTGGGCTCGCTGCTCGGCGTCCTGCTCTACCAGAACATGCTCAA
GGACTACCCGTTCCGCGGCCTGCTCCTATGGGGCCAGCTGCTGGCCTGCCTGTCCGGGATGATCGACCTGGTGCTGGTCA
CCAGGCTGAACCTGAGGATCGGCATGGCGGACTACCTCTTCGCTGTGATGGACAACAGCGTCTCCCAGCTGATCGGCCAG
CTGAAATGGCTGCCGCTCCTCGTGCTCTGCTCCAAGCTCTGCCCCGTGGGCATCGAGGGCACCTTCTTCGCGCTGCTCAT
GTCCATCCAGAACCTCGGCCTGCTCATGTCCGCCTGGTGGGGCGGCCTCCTGCTGCACGCGCTGGGCGTGTCTCGGACCG
AGTTCGGGAACCTCTGGGTGGCCGTGCTGGCGAGGAACGCCATGCGGCTGCTCCCGCTGGCGTTCCTGTTCCTGGTGCCT
CGGAGCGACCAGAGCTCGACCATCCTTCCCGCGGAGATGCTGCTTGCGGATGGAGGTTCCGCGGGACATGTGGAACCAGG
GTCGTCAGGTGTCATCGAGTTTTCTGTCCTCCATGGAAATGAAAATGGTGAAGTTGTTGAGACTGAGGAAGAGGAACTAG
AGCTGACCCCACTCATGGAGAAGATTTGACGACT----------------------------------------------
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>chr2D_636
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-------------------ATCATATTCTCTCCTAATTATAAATCGCATGCAACGGTTTGAAAACAAAATTTATGCTCTG
TAGGTGATGAAGACAACTGTAACAGTACACGTGATCTTTCTCTAAAAAAACAGTAGTGCACGTGACGACGTCGAAGCCTG
AAC--------GCATATTCTACAC-TCCACCACCTAAAGCTTTTATTAAATTAAGACAAATGAAGTCAAACACTGAGCAC
AGATCAAGAAACGCCATCCTCCTGATCCGTGCATTGTACCTGAGCATCCTCTCAGAGCAAGCAATGGCGGGGACCTTCAT
TCTTTCGGTGCAAATCATGGTGGTTTCTCAATAGATTCCAAGAAACCACACAGGAAAAGAATCACTCTGTTCAGATGGAG
CAGGAGCAGCTCCAAGAAACACCCCACGGAGATGGAAATCTCAAGGCCGCCCCAGATCCCGGATACGGAGGCGGCAATGG
CGGCTGCATCGCCCCCAATGGCACCCTCCCCTGCGGCTGGCTCGGCCGCCTGTCCCGCGAGCTGCATTGGAGCTTCGTGC
TCGCCGTCGTCGCCGTCTACGGCGCCTGCCAGGGCGTCGGCTCCTCATTCGGCAGCGTCGCCGCGGGGTACTACTGGAAG
GACGTGCAGCGCGTGCAGCCGGCCGCCTCGCAGTTCTACCAGGGCGTCGTCAACGTGCCCTGGGTCGTCAAGCCCCTCTG
GGGCCTATTCACCGACGTCGTCCCCGTCGCCGGCTACCGCCGCCGCCCGTACCTCCTCCTCGCAGGTGAGCCAAGCCAAT
GCTTTGCCATGGTCAACGTCGTTCTGAATCTGCTCGCCTTCTTAAA---CTGTCCTGATCCATGTATTGTAACCAACTAT
GTAAAGGCGTCATGGGCGTGTCGTCCATGCTCACGCTTGCTCTGCGCCGCACGCCGGCGATCGTGCCGGCATTGGTGGCG
TTCACGACGCAGGCCGCGGGCGCCGCCATAGCCGACGTGGTGGTGGACGCCATGGTCGCGCAGAACAGCATAAGCCACCC
TCCGCTCGCCGCCGACATGCAGAGCCTGTGCGGGTATTGCTCCTCCGCCGGCGCATTGGTGGGGTACTCCATCAGCGGCC
TCGTCGTCCACGCAATAGGTTCCCAGGTCTGAAGTCTGAACTGAACATTTCCTGAGAGAAGATGGATGGTATTGGTAGA-
--------------TTCCAATGTTCTTGCCATGTTCATTTGATCTT----TTCAGGGGGCTCTTGGCTTGCTGAGCATCC
CCTCCGTGCTCGTATTTTCGGCCGGGATTCTTGTGAAGGAGGAGCGGGCCAAGGATTTCGAGTACAACCAGGTGAGCTGA
AGCTTCAGAAGCTGCTAATTAAATACAGTTACAAACATGA--CA----CTTTCAAGGTTGTTAACTG--ATACAT-----
TCAGGTTCATAAGAAGTTCTACGAAGCAGTTGAGTCAATGTGGGCAACATTGAAGTGCCCGCAAGTCTGGAGGCCGTGCG
TTTACATGTTCTTAATGTTCGTGCTAAGCCCG----GACATCCAAGGAGGGCTGTTCTACTGGTACACAGATTCGAGCAC
CGGACTCGCATTTTCCGAGGTACTCAGTTTCTT---TCTGCTAC-AAAAGTTCTTCAGATGCATGG--------------
--------------------------CAAAGATCGACAAAAACTGATGGGGCCTTCCATAA----------TCTGCAGGG
GTTCAT--CGGTCTCATCTATTC---GATAGGCTCAGTCGGCTCGCTGCTCGGCGTCCTGCTCTACCAGAACATGCTCAA
GGACTACCCGTTCCGCGGCCTGCTCCTATGGGGCCAGCTGCTGGCCTGCCTGTCCGGGATGATCGACCTGGTGCTGGTCA
CCAGGCTGAACCTGAGGCTCGGCATGCCGGACTACCTCTTCGCCGTGATGGACAACAGCGTGTCCCAGCTGATCGGCCAG
CTGAAATGGCTGCCGCTACTCGTGCTCTGCTCCAAGCTCTGCCCCGTGGGCATCGAGGGCACCTTCTTCGCGCTGCTCAT
GTCCATCCAGAACCTCGGCCTGCTCATGTCCGCCTGGTGGGGCGGCCTCCTGCTGCACGCGCTGGGCGTGACGCGGACCG
AGTTCGGGAACCTCTGGGTGGCCGTGCTGGCGAGGAACGCCATGCGGCTGCTCCCGCTGGCGTTCCTGTTCCTGGTGCCT
CGGAGCGACCAGAACTCGACCATCCTTCCCGCGGAGATGCTGCCTGGGGATGGAGGTTCCGCGGGAGATGTGGGACAAGG
GTCGTCAGGTGTCATCGAGTTTTCTGTCCTCCGTGGAGATGAAAATGGTGAAGTCGTTGAGGCTGAGGAAGAAGAACTAG
AGCTGACCCCGCTCATGGAGAAGATCTGACGACTCACTGAAACAATTGGTCAATAACTTGACCAAATTGGATAGGAACGG
CTGATGATACGTCAAAGCAACC-AAGAAATCGTCCATGAATATCTTGTAGTTGTAG------------------------
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>chr4D_1817
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-----------------------------------CATTTGATCTTTCCATTCAGGGGGCTCTCGGCTTGTTGATCGTAC
ACTCCATAATCGTATTTTCGGCTGGGATTCTTGTGAAGGAGGAGCAA-CCAAGGATTTTGAGTACAACCAGGTGAGCTCA
AGCTTCAGAAGATGGCAC----ATACAGTTATGAACATGGATGGATGTCTCTCAAGATTGTTACTGT--ATATATTCAGG
TCAGGTTCATAAGAAGTTCTGTGAGGCAGTTGAATCAATGTGGGCAACATTGAAGTGCACACAAGTCTGGAGGCCGTGTG
TTTACATGTTCCCGTGCTTCATGATGAGCCCTGACAGACATCCAAGGAAGGTTGTTCTTCTAGAACAGATATTCGAGCTC
TGGACTAGCATTTTCAGAGGTAG--------TTCCTTCTGCTAAAAAAGTTCTTTG------------GATGCTAGTATT
ACATAGACTAGATCAGGAAAACATGACAAAGATCGACAAGAACTGAACTGATGGATGGGACCATGCATTTCTTTTCTGTG
TAGATTCATGGTCTCATCTATTGTTTGATAGGTTCAGTCGGTTCGCTGCTCG-CGTCCTGCTGTACCAAAACTTGCTCAA
GGACTACCCGTTCCACGACCTACACCTATGGAGCCAGTTGTTGGCCTGTCTATCTGGGATGATCGACCTGGTGCTGGTCA
CCAGGCTGAACCTCAAGATGGGCATACCAGATTACTTTTTCAACATGATCGGTAACAGCGTCTCCCAGCTGTTCGGGCAG
CTGAAATGGCTGCCGCTCCTCGTGCTCTGCTCGAAGCTCTGCCCTGTGGGCATCGAGGGCACCTT-TTCGCCCTGCTCAT
GTCCATCCAGAACCTCGGTCTGCTCATGTCC-------------------------------------------------
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>SNPs
---------------S----------------------S-------S-----S------S-SS-S---------------
------S-----S--------------S-SS----S-------S----------S-S-----SSS----------S----
--S---------------------------------------------------------------------S-------
-S-S---S----SSS---SS-------SS--------------------S---S------------------------S-
----S-S----------SSS--SS-------------------S---------SSSS-SSSS------------------
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-----S---S--S----------SS-----------S----S-S-------------------------S-S-S------
----S-------S--------------------------------S--S-------S------------S----------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SSSSSSSSS------------------
----------S----------------------------------------S----S-----S-----------------
---------------------------S---------------------------------------------S------
----SS-S-S------------S----------------------S-----S---------S--------S---------
----------S-----------------------------------------------------S---------------
---SS--S--------------S--------------------------S-------------S----------------
-------S---------------------------S--------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
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----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-----------S------------------------------------
S-------------------------------------------------------------------------------
-----------S---------------------------------------------------S----------------
-----------------------------------------------------------------------------S--
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------S---------S----S--------------
-S---------S-------------------------------S--SS----S---------------------------
-----------------------------------S------------------S----S--------------------
----S-----S--------S--S---------------------------SS----SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_242
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--------------------------------------------------------------TTTCCCAAATCAGCTCGC
CT------------------------------------------------------------------------------
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>reverse_2959
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------TC
TCGTCGTCCATGCAATAGG-------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>forward_259
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
CTCGGACTCCCTTGATTCC-------------------------------------------------------------
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>reverse_3164
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-------------------------------------------CCGGGCCAAGGATTTCGAG------------------
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>forward_2183
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---CCCGTTGCAAATCATGGTGT---------------------------------------------------------
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>reverse_3891
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--------------------------------------------------GATCGAGGGCACCTTCTTCG----------
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---------------------------------------------------------------------
>forward_3344
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--------------------------------------------CAACATTGAAGTGCCCGCAG----------------
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>reverse_4503
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----------------------TGAGGCACCAGAAATTCGCT--------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------
