>input_sequence_40939
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-----------------------------------------ATGGCGGAGCTTTTGGCTTCTTGGGCCGCCGAGGAGCGG
TGGATGTACCCGGCCTTCCTGGCCATGTACGCCGTCATCTACTGTGTCGGGCAACTGGTCTTGTTCCGGCGCTGGGAGTG
GAGGCACCGGCTGGACGGCGCTAGCTGCCTCATCTCACTCGCGCACGGCTCCGCTGCCGCGCTGGCGGCGGTCGCAGCCA
TCGCCGCGCAGCCGGCGGGGAACCGGGGTTTCGCTGCTCCTAATTCCCGCATGCAGGACCACGTCCTCGACTACAGTGTC
GCCTACTTCACCATGGACCTGCTCCACTATCTCGCCTTCCTCCCCGGGGACATCCTCTTCATCGCCCACCACCTCGCCAC
ACTTTTTGTCTTCTTCACCTGTCGCTACGTCGTCCACCATGGCGCATACGCACTCCTCGTCCTGCTCTTTCTCGCCGAGG
TAACCAGCCTCCTGCAGAATGTGTGGACACTCGCCGGGATCTGGCGAGCCGAGGTTCCCACTGCTGCAAGGGTGTACAAC
ACTTTGTCGCCGCCGTTCTATGTGCTATACACCATAGTCAGGGGCGTCGCGGGACCGGTCTTCTTCCTCAAGATGAGCCT
ATTCTATCTGTCCGGCCAGGCCGTGGATCTCATCCCCTGGTGGGTGCGCATATCCTGGATCATTGTCGTCGGCGCTGCTA
TCACGGTGAGCAATTTTTGGATTTGGAATCTTTGGAAGACACTGTTTAAGGAACGGAAGCACAGCATTGGAAAAAAAGAC
ACATAGTAGAATAATTATTAGTGGCTCAATTTGTTATTATTTGTGGTGACACCTGAAGAAGATGAAAATTCC-TAAAACA
TGTTGATGAATTGATGATAGCTGATGATGACGGATATACTTTGAAATGTTGTATACACAATGTCTCTCCATTATTTAATT
CAGTCATTCAGGCTTGAAATTTAGTCAGTAAGATAATGCAATTTAAGACTCAATCTAAGGATTTGTGTTGGTGTTTCATT
TTCAGTATTTTGTCAAAATGTTAGAATTTTCTGTGCCTTTAGTCATACTAGTAATTGTGCACGTGTGTTCATATGTCTTG
GAAATAGTTTGACCCACCAATCTTTGCCTCTAGTAGATTACTCATGTCTTGTCTACCCTATCTAACTCCCCCTCTCTATG
TCTTGTCTACCCCATCTAACTCCCTCTTTTTATCCATGGAGTTCTTTTGACCACATGAAATTAGTGTAGATCTCCATTAT
TTTAGATAAACATGACCACCTTTCTGCCACCAGAAATTAATATGCTGAGGATGACATGGTTGGTTTAAAGAGCAATATTA
TATGTTAAGATGAGATAAAATGCAAGGATTGACCTTTTGCCATTGTGTTTGTTACATCTGTAAGCTGAAATAGCTAAACC
AAATGTTTATGCCCAAACAAAATGTACAATAATGTCTTAATGTCTTATATATAAAAAATGAGTTCAAAAACAATGTACTA
CTTAGTATTAATAAAACATAGTAGTGTCAGAGTCCTAATAGTGGTGGACTGAAGTATTGATTTTTTTTTCCTGATATAAG
AAGGTAAGCCTCAGTCTACCTTATATATTATATTCCAAACACAAAGTATGGTTCAAAACAGGATACAAAGCAAAATAAGA
AAGACAGACAATAAAATAATAGAAAAAACTGAAAGTAAAGAAGGAGAAAGGATCCTTTTAGGAACGCTATACATGGTATG
GGA-AAAACATTCTGCAGAAGAAAAGAAGAAATCCTTCGGCGCTTGGTTATCATTTGAATTGCTCCATAGCTTGATTGTG
TTTACAATTTGTTGCCGTGAGACAAAAACCCGTTTGTTGCAGACTTCCCAGAGCTGCACAGCCCATGCCGCGAAGATGAT
GTGCCAACGTCAGGCTTGGCAGTCTGCAGAAAAGAAAGAATATAAATAG-------------------------------
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>chr1D_1_TraesCS1D01G132000
AGTGAGGGGTTTCTATGGCGGGCAAGATGCAAGGGATTGGGAAGTGGGACTAGCGGCGAGGAGGTACGTGAGGGGAATAA
GTTAGACAGAGCATTGGGGCTGCAGGAGCACCATTACCGGTGGCTGGATAGTGGCGGTGAGGAGGTACGTGAGGGGAATA
AGTTAGACAGAGCATTGGGCTGTAAGTTCAGGGGATTTGGGGCTGGGTCGCAACAAGACACCCGACGCTACTAACAATAG
CGTCCACACCTGGACGTGGTTACAAGAACGGCCCGACCTAGACGCATTTAATCACAGCGTCCTTACTATTTTGACAATTT
CCAGCGGCCCTTTACCACTTTCATAATTATAGAATTAGCACTTATTATTAATAAAAAATTAGAACAGAGTGCATGCCCAA
ATGCGTTTACTCTGCGCGCTAACATGTGTGCATGCAAGGAGCCTCTCGCGTCCTACGGTTGTTCCCTCTCGCTCGCTCGC
CGGCCGGCGGCCTTACGAGGTGCCGCAAGCTGGGTCGCTTGCCGCCCGCGGCCTTTGGAGGTGCCGCAAGCTGGGTCTCT
CCCCGGCCGGCAGCCTTTCGAGGTGCCGCAAGCTGGGTGGCTCGGCGTCGGCGGCCATGACGAGGACCTCACCTGACTCA
CTGCACCGGCCAAAAGTAGGTCTCCTGCCGGCAGGGGACCATGGTTTTAACTTGTGTAAAGCCGGACCTGTTCCAGCCCA
AACCAAAACCAACTGGTCTATACAAGAAACCGAACTAAACCAAACCTCTTGTCAAACAGGACCCGTTTACACCCGAACCA
AACAACCCACGATGGAAAACTGACCCAACACACTCGGTTTAAAGAAAACTATTCTCAGAAGATTTATCCACAGCCGAATC
CCCTTCACACCTCCCGCTGTGGCGCCGCGAGATTTCCCGATTCGCCGCTAATCCGAACGGCCCGGAG-CGGCGGATCAAA
TCCTGCGATATCAGATTCTCGTCGCAAATCTCTCTGCTGCCATGGCGGAGCTTTTGGCTTCTTGGGCCGCCGAGGAGCGG
TGGATGTACCCGGCCTTCCTGGCCATGTACGCCGTCATCTACTGTGTCGGGCAACTGGTCTTGTTCCGGCGCTGGGAGTG
GAGGCACCGGCTGGACGGCGCTAGCTGCCTCATCTCACTCGCGCACGGCTCCGCTGCCGCGCTGGCGGCGGTCGCAGCCA
TCGCCGCGCAGCCGGCGGGGAACCGGGGTTTCGCTGCTCCTAATTCCCGCATGCAGGACCACGTCCTCGACTACAGTGTC
GCCTACTTCACCATGGACCTGCTCCACTATCTCGCCTTCCTCCCCGGGGACATCCTCTTCATCGCCCACCACCTCGCCAC
ACTTTTTGTCTTCTTCACCTGTCGCTACGTCGTCCACCATGGCGCATACGCACTCCTCGTCCTGCTCTTTCTCGCCGAGG
TAACCAGCCTCCTGCAGAATGTGTGGACACTCGCCGGGATCTGGCGAGCCGAGGTTCCCACTGCTGCAAGGGTGTACAAC
ACTTTGTCGCCGCCGTTCTATGTGCTATACACCATAGTCAGGGGCGTCGCGGGACCGGTCTTCTTCCTCAAGATGAGCCT
ATTCTATCTGTCCGGCCAGGCCGTGGATCTCATCCCCTGGTGGGTGCGCATATCCTGGATCATTGTCGTCGGCGCTGCTA
TCACGGTGAGCAATTTTTGGATTTGGAATCTTTGGAAGACACTGTTTAAGGAACGGAAGCACAGCATTGGAAAAAAAGAC
ACATAGTAGAATAATTATTAGTGGCTCAATTTGTTATTATTTGTGGTGACACCTGAAGAAGATGAAAATTCC-TAAAACA
TGTTGATGAATTGATGATAGCTGATGATGACGGATATACTTTGAAATGTTGTATACACAATGTCTCTCCATTATTTAATT
CAGTCATTCAGGCTTGAAATTTAGTCAGTAAGATAATGCAATTTAAGACTCAATCTAAGGATTTGTGTTGGTGTTTCATT
TTCAGTATTTTGTCAAAATGTTAGAATTTTCTGTGCCTTTAGTCATACTAGTAATTGTGCACGTGTGTTCATATGTCTTG
GAAATAGTTTGACCCACCAATCTTTGCCTCTAGTAGATTACTCATGTCTTGTCTACCCTATCTAACTCCCCCTCTCTATG
TCTTGTCTACCCCATCTAACTCCCTCTTTTTATCCATGGAGTTCTTTTGACCACATGAAATTAGTGTAGATCTCCATTAT
TTTAGATAAACATGACCACCTTTCTGCCACCAGAAATTAATATGCTGAGGATGACATGGTTGGTTTAAAGAGCAATATTA
TATGTTAAGATGAGATAAAATGCAAGGATTGACCTTTTGCCATTGTGTTTGTTACATCTGTAAGCTGAAATAGCTAAACC
AAATGTTTATGCCCAAACAAAATGTACAATAATGTCTTAATGTCTTATATATAAAAAATGAGTTCAAAAACAATGTACTA
CTTAGTATTAATAAAACATAGTAGTGTCAGAGTCCTAATAGTGGTGGACTGAAGTATTGATTTTTTTTTCCTGATATAAG
AAGGTAAGCCTCAGTCTACCTTATATATTATATTCCAAACACAAAGTATGGTTCAAAACAGGATACAAAGCAAAATAAGA
AAGACAGACAATAAAATAATAGAAAAAACTGAAAGTAAAGAAGGAGAAAGGATCCTTTTAGGAACGCTATACATGGTATG
GGA-AAAACATTCTGCAGAAGAAAAGAAGAAATCCTTCGGCGCTTGGTTATCATTTGAATTGCTCCATAGCTTGATTGTG
TTTACAATTTGTTGCCGTGAGACAAAAACCCGTTTGTTGCAGACTTCCCAGAGCTGCACAGCCCATGCCGCGAAGATGAT
GTGCCAACGTCAGGCTTGGCAGTCTGCAGAAAAGAAAGAATATAAATAGATGAATCAGCCAAAGGCAGGAGAGCCAAAAC
TGTCTCAAGATCATGTACTGGTTTGCATTGGAGCAAGATCTGGTTAACTATCTCCCAACAGCCAGGCATGCAATAGTCAC
AGAAACATTCTTGAAGGTTCACCCCA--CTTTTTTATCACATTCTCATGCGTATCGAGTCTTCCTCTGAAATCCAGCCAA
AGGAGCACATTGTTCTTCTTGCGGATCACAGAGCACCAAATGTATTTTAGCAGGGGACCAAAGGACGCCATGTGTGTATA
GCAGCCTGAAGAAACAGTAAGTAGAAGAGTATTAGTTCCTGTTCCAAATGAATGGAAATGAAATTTGCGGCAATATGCCA
ATCAATGAACTACTCACAAAATCAAAATTGGGAGTTTGGTCAGACTGAATTACAGTAGCTGCAAGAAAGACTGCTAAATA
AAAAGTCATCTTAAGATATTATGATAGGTTAGAACATATACGAACTCAAATTGCAGCTGAAGAAAGACTGCAGCAACATT
ATCATTCATGGTTTCAAGGAGGGCATGATCCTGGTGTTATGCTCCCCAAGTGCTCTGCAACATTGGTACAAAAAAGAATA
CATGGCAATTGGAAAGTAAACACGATTGGCAAAGAAGCAAAGGGAACCCAGGGAAGATACTGAATAATTAAAGAGTGACA
CTCACAAGTGCAAGGCACTGGATATTACAAGAAGGATAAATTGCATAATACTACCTCTATAACTAAAGATAAGACGTTGC
ACAAACGTCTTATATTTACAGAGGTAGTACTAAAATGAAGGTAGTTTTCTATACTCTGGCTATTTCCTAGAGAAGGAGGT
AAGGCTTTGCACATAGGACAAAATTAGCATTGCTGCTGTAAATCGGTTCCACCCTGAGAACTTTTTTCTTTTTTGCGGGG
GAATACATGTGGTGAATTAATCAAGAAAATGGACAAAATCTAAAGGTGATTTAAATATCGTGGAGCACAGCGTCGCTTTC
ATATTCCATTT
>chr1B_867
--------------------------------------------------------------------------------
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------------------------------------------------------------------TCCACAGTTGAATC
CCCTTCACACCTCCCACTGTGCCGCCAAGAGATTTCCCGAATCGCCGCTAATCCTAACAGGTCGGAAACGGCGGATCAAA
CCCCGCAATATCAGATTCTTCTCGCAAATCTCTCTGCTGCCATGGCGGAGCTTTGGGCTTGTTGGGCCGCCGAGGAGCAG
TGGATGTACCCGGCCTTCCTGGCCATGTACGCCATCATCTACTGTGTCGGTGAATTGAGCTTGTTCTGGCGTTGGGAGTG
GAGGCATCGGCTGGATGGCGCTAGCTGCCTCATCTCACTCACGCACGGCTCCACTGACGCGCTGGCGGCGGTCGCAGCCA
TTGCCACACAGCCGGCGGCAAACCGGGGTTTCACTACTCTTAACTCCCGCATGTAGGACCACGTCATCGACTATAGTGTC
GCCTACTTCACCATGGACCTGCTCCACTATCTCGCCTTCCTCCCTA-GGGCATCCTCTAGATCGCCCACCACGTCGCCAT
GCTTTTTGTCTTCTTCACATGTCGCTACGTCGTCCACCATGGCGCATATGCACTCCTCGTCTTGCTCTTTCTCGCTGAGG
TAACTAGCTTCCTATAGAATGTGTGGACACTCATCGGGATCAGGCGAGCCGAGGTTCCCGCCACTGCAAGTGTGTACAAC
ACTTTGTCGCCGGCGTTCTATGTGCTATACACCATCGTTAGGGGCGTTGTGGGACCGCTCTTCTTCCTCAAGATGAGCCT
GTTCTATCTGTCCGGCTAGGTTGTGGATCTCATCCCCTGGTGGGTGCGCATATCTTGGATCATTGTCGTCAGCGCTACTA
TCATGGTGAGCAACTTTTGGATTTGGAACCTTTGGAAGACACTGTTAAAGGAACGGAAGCAGAGCATTGG-AAAAAAGAC
ACATAGTAGAATAATTATTAGTGGCTCAATCTGTTACTATTTGTGGTGACACCTGAAGAAGATGATAATTTCTTAAAAAA
TGTTGATGAATTGACGATAGCTGATGATGATAGATATATTTTGAAATGTTGTATACACAATGTCTCTCCATTCTTTAATT
TAGTCATTCAGGCTTGAAATTTAGTTAGTAAGATAATGCAATTTAAGACCCAGTTCGAGGATTTGTGTTGGTGTTTCATT
TTCAGTATTTTGTCAAAATACTAGAATTTTCTATGCCTTTAATCATACTAGTAATTGTGCACATGCATTCATATGTCTTG
GAAATAGTTTGACTCATCAATCTTTGCCTCTAGTAGATTACTCATGTCTTGTCTACCCCATCTAACTCCCTCTCTCTATG
TCTTGTCTACCCCATCTAACTTTGTCTTTTTATTCATGGAGTTCTTTTGACCACATGAAACTAGTGTAGATTTCCCTTAT
TTTAGATAAACATGGCCACCTTTTTGCCACCAGAAATTAATATGTTAAGGATAACATGGTTGGTTTAAAGAGCAGTATTA
TATGTTAAGATGAGATAAAATGTAAGGATTGGCCTTTCTCCATTGTGTTTGTTCCATCTGTACGGTGAAATAGCTAAACC
AAATGTTTATGCCCAAACAGAATGTACAATAATGTCTTAATGTCTTGTATATAAAAAATGAGTTCAAAAACAATGTACTA
CTTAGTATTAATAAAACATAGTAGTGTGAGAGTCCTAATAGTGGTGGACAGAAGTATTAATATG--TTTTCTGATATAAG
AAGGTAAGCCTCGGTCTAACTTA-----TATATTCCAAACACAAACTATGGTTCAAAATAGAATACAAAGCAAAATAAGA
AAGACAAGCAATAAAATAATAGAAAAAACTGAAAGTGAAGAATGAGAAAGGATCCTTTTAGGAACGCTTTACATGGTATG
GGAAAAAACATTCTGCCGAAGAAAAGAAGAAATCCGTTGGTGCTTGGTTATCATTTCAATTGCTCCATAGCTCAATTGTG
TGTACAATTTGTTGTTGTGAGACAAAAACTTGTTTGTTGCGGAGTTCCCACAGCTACACAATGCATGTCGCGAAGATGAT
GTGCCAACATCAGGCTTAACAGTCTGTAGAAAAGAAAGAATATAAATAGATGAATCAGGCAAAGGCAGGAGACCCAAAAC
CGTCTCAAGATCACGTACTGGTTTGTATTGGAGGAAGACATGATTAACTATCTCCCAACAACTAGGCATGCAATAGTCAC
AGAAACAATCTTGAAGGTTCATCCCACTCTTTTTTATCACATT-------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-----
---------------S-----S----SS------------S-------------S---S-SS----S-------------
S--S--S------------SS---------------------------------S-----S-----------------S-
---------------------------------S----------------SS--S--SS-------S----S--------
------S--------S------------------------S-----------S---S-----------------------
-S---S-S----------SS------------S--S---S---S---------S-----------S-------S------
--------------------------------------------SSS--S--------SS------------S------S
S-----------------S-----------------------------S------------S-------------S----
----S---S----SS-----------------SS-------S-----------------S-SS-------S---------
------------S----------------------S--S--------S-S-------S----------------------
S---------------S---SS--------------------------------S---------------S-----S---
---S---------S--------------S-----------------S--------------S--------S---------
------------------------------S-----S----------------------------S----S-------S-
--------------S---------------SS------S---------------------------------S-------
S------------------------S-----------------------S--S-SSS-----------------------
-------------------SS-----------S--------S--------------------S--SS-------------
-------------S--S-----------------------------------------S-----------S---------
---------------------SSS---------S--------------------------S----------S---S----
--------------S--------S--------------------S-S-----S---------------------S-----
----------------------S--------S-----SS--------------S--------S-S---------------
-------------------S--------------------------S---------------------------------
---------------------------S---------------------S--------S--S-SSS---S----------
------------S-----S----SSSSS-----------------S------------S--S------------------
------SS----------------------------S-----S-------------------------S-----------
----------------S------------------S-S--S---------------S---------------SS------
-S------------SS-------------SS---------S--S------S----S----SSS----S------------
--------S--------SS-------S-------------------------------S-------------S-------
S------------S-----------S-------S----SS--S-----------------S-S-----------------
-------S-------------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_423
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---CGTTTACTCTGCGCGCTAAC---------------------------------------------------------
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>reverse_1325
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--------------------------------------------CGGGGACATCCTCTTCATCG----------------
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>forward_714
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------------------------------------------------------TGTAAAGCCGGACCTGTTCC------
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>reverse_1727
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----------------------------------------------TAAGGAACGGAAGCACAGCA--------------
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>forward_1091
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-------------------------------CCGTCATCTACTGTGTCGGG-----------------------------
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>reverse_2830
--------------------------------------------------------------------------------
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-----------------------------CCGTTTGTTGCAGACTTCCC-------------------------------
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>forward_1244
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------------------------GGGGTTTCGCTGCTCCTAAT------------------------------------
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>reverse_3110
--------------------------------------------------------------------------------
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---------------------------------------------------------------------AATCCAGCCAA
AGGAGCACA-----------------------------------------------------------------------
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