>input_sequence_40887
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-----ACATAAGCAGCGCGGCGGCACACCCTTGCCCTGGAGGAGAGAGGAGAGCGCCGATCGTCGGACCACGGGCAGCCA
CACGAGACTA-------------------------------GCACGATGGAGGCGCTCGCTCCTGCCGGGGGCAAGCCGC
TGTCGGGGCCGCGGGCGCGGCGGATCGCCCGGAGCCGGGAGGAGATGCTGGGCCTCCTCGCCGACTTCGACGGCGGCGAT
GGCGGCTCCGACCGCGAGCTCTCCTTCTCCGACCTCGTCGACGCCGTCAGGCCGCCGCCCAACGCCGGCCACGCCTCTGC
GTCGCCGCCGCCGGCACCAGTAGGGGTCGAAGCGGCGGCGGCCGAGCAGAGGCCGGAGGAGGCCGTGGCACCGAAGCAGA
AGCAGGCGGCGGCGGTGGCGGGAAAGGAGAGGAGGAGGCTGCGGAGGCGGCAGAGCGACAACAGGGGCAGCTGCGGGGGA
GGCGCGGACGGCAACGGCGTGCTGCTCAACTTCTACGTGCCGGGGCTGCTCACCCGGAGCATGACGGCGCCGCGCCCCG-
-----GCCGGGGCGTGATGCCGGCCGCGGGGGCACGGCAGACCGCGCCGCCGACGGTTGCCGCCGGCAAAACCAGGTGAG
CTTTT-CTGTTCGCAACCGCCAGA---------------GCTTCTCGAAATTCGCGCCATGGATGGATG--CAAACCGCA
ATGATTAACCTCTCCGTTCAAACAGTAATTAGCCATGCAGTCAAATAGTCAATGAATCTTCCAATACTAGTACTATCATG
TAGTAGCACTGATTGCTAATAATCATGTCGAAATCTTTTC------TACTCCCTCCATTCTTAAATATAAGTCTTTTGAG
ACATTTTAAATGAACTACAACATACGAATATATATAGATATATTTTAGAGGGTAGATTCACTCATTTTATTGTGTATGTA
GTTATTTGTTGGAATCTCAAAGAAACTTATATTTGAGAACAAAGAGAGTAGTAACGAGAGTTATAGTACAGTGCTCCCTC
CATGTCAAAATAAATGTCTCAACGTTTTATTAATTTTCATTTAAAATTATATTAAAGTTGAGACACTTATTTTGATACAG
CGAGAGTAGTAGGTAGCAGGTGAAGTGCTCGTTCAGTCGCTGTAGACATGGCCGAGCACCAGTGAAGTCTCTGACTAGTA
CTACTATGGTTGCACTGAATATGTCCAACTGCATTGCTAGATTTTTCTTCTGTTTATAATACGGAGTACATGATAGTAAC
ACATCTCGCAACCATTATAAATGCTCATTTAGTCACGTCATTGTTTCCAACCCCGCAAC-----AAAACGAG--TGCGTG
GCCGCGAAAACCCTTTCTCCAACAAACGGGTTTTA-------------------------------AAAAGGACCAATCA
CCAATCAATCTGCG----------------------------------------------------------------TT
CTCTCAGGATCTCACTTCCTTTGACAAT-----------TC-TCCTTTAGACCACATGATTAAACCTTTTGACTTTGGTA
GCACTCGACTCAGAGAAAAATTGGAACAACTCATGTTCAGCGATATGAAAATGGAACGGCGACGACGACAATCCGCCCGA
AGTTTGTTAAAAACAAGGGGGGGGGGAACACTGACCAAAGTG------------------------------CAGAAATA
CGCAAATACTGTTCAATACGTTCTTTGTTTCTTTCTTTCTTTCCGAGGCTACTACATGTTCAATAGTATCGACCACCGCT
AATCTGTTTCGGAC---------------------------------------------------GTTCAAATGTTTCAG
GATGCAGGCGTCGCTGGACATCGGCTGCTGGCCGGCGCTGTGGGGCAGAGGCCGCGACCACCACC---GGAACAAGCCGG
TCTGAGAGTCTTCTA-TTCTTCCATGCACATACAGCC----------------TACTCGTAGTCTGAACCTTTTTGTGCA
GCTAATGCGAGCCTTTTTCCT-CTGCTCACGCATGTAAATTATTATCTCCTGTTTTTGTAAACGTGGTTTGTGTTGGGGC
CTTGT---TTAAACTGCGTTTGGTGCTGCTGTAGCGCTGTGTGA----------TCTTTCTCGA----------------
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>chr1A_1_TraesCS1A01G309600
TTGTCTTAAGTCAAACTTCATTCTGTTTGACCATGCTTATACAAAAACATGGCAACATCTAAAACACACTTTA--TTTGC
TTCATTAGATTCCATATAAAACATATTCTTATAT----------------------------------------------
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-GTTTAGCAACGTATTGACAGC----------------------------------------------------------
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------------------------------------------------------------------------CCAAGATA
CGTGAATGCACCGATGCCTACTACTCCACCTTA--------GAAGCCTTCGTTTCGTTCCAGAAGAAATGGGGAGAGGAG
CCTGTTGACGCCGACGGGGCACGAGAAAGCGAGGGGCGGCGAACCTGGGACCTTTTCTTTCGAAGGAATGGGAGAGGTAT
GGTATACTTAATACTCCTCCTCCCCCGTCGGTAACGGTACGTGCTTGGTCCGACGATGCCTCGCGGCTGCCGTTTTCTTC
CCTTTAATTGAAAAC----CCTGTGATGCGTGCGTCGACTCTTTCATTGAATCCCCTTAAATCCGGCGGGTGATACGTCG
TCATCGTCGCGGCGCTCCGACGATCCCCGTGTCCGCGAAACCGCGTGTACGTGCAGCAGCGCGAGAGGCCGGACTCCCGT
ACGCTCCGG---------------CCCGGCGGCGACCACGGTGGTTGCGCTCGACGTACGGGGCGGTTCTTACAGTT-A-
------------------------------------------------GAATTTGAC---GTGGAATCCAGCCACACGAT
GCGTGATTCTTTTACGTGCGCCGCATGAGATTCTGAATG----TGCCTTGAACTCATGCGTGCATACTTTGCCACAGAAT
ATTGTCCTCTTACTTGCAAGAAAAGAAAATGAGAAAGAAGGGTGACGGCCACTG-----AGCAGAAAAGAAGGCTCGCCG
TCTGCAGCTGAAGTGGACGGAAAAGGACGCGTCTTGAAAAGAAATCCTGGGCTTCTAGATCGACCGACCGGGCGCG--CT
CGT-------------CTTGACCTGGACTGAGGTGCAGATAAAGAGGAGAAGCTTCAGAAAGGACGACCC-AAGGAAGAA
AACTAAGCCAAAAGCGGCACCGAGCAACAAACCGATCG-AGCACACCACATCACATCATCTCGCGTTCTCTAGCTAGCTA
CACCTACATAAGCAGCGCGGCGGCACACCCTTGCCCTGGAGGAGAGAGGAGAGCGCCGATCGTCGGACCACGGGCAGCCA
CACGAGACTA-------------------------------GCACGATGGAGGCGCTCGCTCCTGCCGGGGGCAAGCCGC
TGTCGGGGCCGCGGGCGCGGCGGATCGCCCGGAGCCGGGAGGAGATGCTGGGCCTCCTCGCCGACTTCGACGGCGGCGAT
GGCGGCTCCGACCGCGAGCTCTCCTTCTCCGACCTCGTCGACGCCGTCAGGCCGCCGCCCAACGCCGGCCACGCCTCTGC
GTCGCCGCCGCCGGCACCAGTAGGGGTCGAAGCGGCGGCGGCCGAGCAGAGGCCGGAGGAGGCCGTGGCACCGAAGCAGA
AGCAGGCGGCGGCGGTGGCGGGAAAGGAGAGGAGGAGGCTGCGGAGGCGGCAGAGCGACAACAGGGGCAGCTGCGGGGGA
GGCGCGGACGGCAACGGCGTGCTGCTCAACTTCTACGTGCCGGGGCTGCTCACCCGGAGCATGACGGCGCCGCGCCCCG-
-----GCCGGGGCGTGATGCCGGCCGCGGGGGCACGGCAGACCGCGCCGCCGACGGTTGCCGCCGGCAAAACCAGGTGAG
CTTTT-CTGTTCGCAACCGCCAGA---------------GCTTCTCGAAATTCGCGCCATGGATGGATG--CAAACCGCA
ATGATTAACCTCTCCGTTCAAACAGTAATTAGCCATGCAGTCAAATAGTCAATGAATCTTCCAATACTAGTACTATCATG
TAGTAGCACTGATTGCTAATAATCATGTCGAAATCTTTTC------TACTCCCTCCATTCTTAAATATAAGTCTTTTGAG
ACATTTTAAATGAACTACAACATACGAATATATATAGATATATTTTAGAGGGTAGATTCACTCATTTTATTGTGTATGTA
GTTATTTGTTGGAATCTCAAAGAAACTTATATTTGAGAACAAAGAGAGTAGTAACGAGAGTTATAGTACAGTGCTCCCTC
CATGTCAAAATAAATGTCTCAACGTTTTATTAATTTTCATTTAAAATTATATTAAAGTTGAGACACTTATTTTGATACAG
CGAGAGTAGTAGGTAGCAGGTGAAGTGCTCGTTCAGTCGCTGTAGACATGGCCGAGCACCAGTGAAGTCTCTGACTAGTA
CTACTATGGTTGCACTGAATATGTCCAACTGCATTGCTAGATTTTTCTTCTGTTTATAATACGGAGTACATGATAGTAAC
ACATCTCGCAACCATTATAAATGCTCATTTAGTCACGTCATTGTTTCCAACCCCGCAAC-----AAAACGAG--TGCGTG
GCCGCGAAAACCCTTTCTCCAACAAACGGGTTTTA-------------------------------AAAAGGACCAATCA
CCAATCAATCTGCG----------------------------------------------------------------TT
CTCTCAGGATCTCACTTCCTTTGACAAT-----------TC-TCCTTTAGACCACATGATTAAACCTTTTGACTTTGGTA
GCACTCGACTCAGAGAAAAATTGGAACAACTCATGTTCAGCGATATGAAAATGGAACGGCGACGACGACAATCCGCCCGA
AGTTTGTTAAAAACAAGGGGGGGGGGAACACTGACCAAAGTG------------------------------CAGAAATA
CGCAAATACTGTTCAATACGTTCTTTGTTTCTTTCTTTCTTTCCGAGGCTACTACATGTTCAATAGTATCGACCACCGCT
AATCTGTTTCGGAC---------------------------------------------------GTTCAAATGTTTCAG
GATGCAGGCGTCGCTGGACATCGGCTGCTGGCCGGCGCTGTGGGGCAGAGGCCGCGACCACCACC---GGAACAAGCCGG
TCTGAGAGTCTTCTA-TTCTTCCATGCACATACAGCC----------------TACTCGTAGTCTGAACCTTTTTGTGCA
GCTAATGCGAGCCTTTTTCCT-CTGCTCACGCATGTAAATTATTATCTCCTGTTTTTGTAAACGTGGTTTGTGTTGGGGC
CTTGT---TTAAACTGCGTTTGGTGCTGCTGTAGCGCTGTGTGA----------TCTTTCTCGAAAGGCAGGCAGCCACG
GATGGACATGTCAACTGTAGGCTTACTTTGTCACTTTGTGACTTTGCGAGATCCGGCGGTGCTGTTGAGTGAGAGCACGC
GATGCTCCTTTTCGACAGGCCGCCTCACGTTCCCCGTGGCGTGCCGCTGAAGCGATGCATGTGCAAAGCTCGCAC-AAAA
AGCAGAACCAACCGAAATCTCGGCGGTGCG----TACGTGACCTCGCTTTCAGTTTCAGTAGGCGATAGATAAACGGAGG
CTGGGTGG-------TGATGCTGGTGGTGAGTACACAAGACATGAAAACGATTGCTGTGATTCAGCTGACTGAATCTACC
ACTACCAGCTAGCAGCCTAGTACGGTAGTAGTATAAGGTTCGGGGACGAGCCGTCCTTGTAGCT------------TGGC
GCCCGGCGGAGGCACGTCTGCGTCCAAACCAGATACGATATCACTGCCG------GTACCGGCCCGCTGAAGTCAAGGCC
AGAGACAACGAGATAGA----------------------CAGGCAGTGTCAAACGATGCCGACTGCACAT-------CAT
GGCACGTAACACATCGAGGCGGCGACGTGGCAGGAAAAAGAAGAAACTGCGACCGA-TGCATCCAGTCCAC---------
------TGCCCTCGAGGTGGTGGAGTACTTGACAATGACAATCATCACAAACTATGTGAAGAAACAGCAAACATTGCATT
AGGATTCAGAGCCAGACATATTACAAACCTGCTACTAAGATCTCAAGTTCACC-------------AACAAACTGACTAC
CGGATTAACCCGACACAGACAAACTAC---ACAAGCAACAAGTCCACGACACCCCGAAGACGACGGGGGCCAGCAAGCGC
GAAACACACACAC---------TACTAGTAGCAACACGGAGCCATCAGAAATAGCCCCGGGCAACGATCAAGGAAGATCC
ACGGAA----CAGAC----CTCGCTGGCCCCTACTCCTGGAGGTCGGCGTCGTCCTCGTCCTCGTACAGCTCCTCCTCCT
CGTCGGCGGTGGCGTCCTGGTACTGCTGGTACTCGGCGACCAGGTCGTTCAT
>chr1B_1
TTGCCTTAAGTCAAATTTCATTCTGTTTGACCAAGCTTATACAAAAACATGGCAAAATCTAAAACACACCCTATTTTTGC
TTCATTAGATTCCATATAAAACATATTCTTATATATTTGACATTGTATATCTTACCAGAATTTTCTGTAGACTTGATCAA
AATTTAAAAAGTTTGACTTGGGGCAATCCTACAACTTCAATTATTTTAAAACTTATGGAGTAAAAAAACAGTGTTTCCAA
TGTTTAGCAACGTATTGACAGACCAAGATACGTGGATGCACCAATGCCTACTACTCAGCTTTGGAATTCTTCATTTCATT
CCAGAAGAAACGAGGAGGGGGCCTGGATGACGCCGACGAGGCACGAGAAAGCGAGGGGCGGCCAATCTGGGACATTGCGG
TCGAAGGAATGAGAGGTATGCTCCTCCTCCCCCGTTGGTAACGGTACGTGCTTGGTCCGATGACGAGTCGCGGCTGCCAT
TTTCTTTCAATTGACTAGCAAGATGCTCATGCGTTGCAAAAAATATCAAGATGCATTTATACGAGTAGCTAGAAAAAGAT
GAACGAGGGAATGCCTTATTTGCAAATGTGAAGAGGGGTGTGAGTATCCTTTTACAAAATTGCCATTGTTTTATTCCTAT
CCGTCAGATAATAAATTGGATGGCCTATACTACAGAATGACAGGCACACCATCATCATTAACTCTGTTTTTTTATACAAA
AGCATTGCAAAATCTAAAGTACACCTTATTTTTGCTTCATTAGATTCCATATAAAATATATTTTTATATATTTGACATTG
TATATCTTGCCAGAAATTTCTGTAGATTTGATCAAATGTTGAGTATATTGATTATAAGGAAATACGAAATAGACTAGAAT
TTATTCTGACTTGTCTTGTACTTCAAGTTGATCATTATACTCCTATATATATGCCCACGAGGCTCAAGCAAAATAATAAA
CTATTCTACAAAACCGCTCTCTACCTTCTAACATGTTATCTATCGCAAGTCGATCCTAAACCCTAGCCGCCGCCGCTTCC
GCACCTGCGCGCCGCCCCCGGGGCGGTCGGCCCCCATGACCACCGCCGGGGGCCGCGCTGCCCGTACTTAGGGTTCGTCC
GCCGGTTGTGTTGACCGGCTTCCCTAGAGAGTCTTTTCCCCGAGCCTTGCTCCGGGGTTTTCTCTCTCCCGCCGGTCATC
TTGATCGCGCGGTTTCTTTTTGGTTTTTCGATCTATTCTTGATCGATTTGCGTCGCCTACCGCCGCCGTCGACCCCGAGC
GTCTCTACTCCGATCCCGCCACGACCCGCCGACCTCTCCTCCGACCCTGCACCGGCCGTCACCGCCCTACTCCGACCGGG
ACACCTGCATCGCCCTGACCCGGCGGCCACGCGCCATGCGACAGCCAATCATAGTCGTCGCTTGCGCGCCGGCCCGCCCG
TCGATCCACATCACCCGCCTCTGCCGCATCTGCATGGCAGCCTGGCGGTCTACCTCGTCGGCCTCGTCCTCGGCGGCGTC
GAGACGGCTGCGTCAGGCTTGTCGGCTGCCTCAACTCGGGCGTCGTTGCTCCGTTGGTCGCTCGGGCCTCGCTGCCCGGG
CTTCGGCGTTGCTTTGGCAGCCCGGGTGCCGGTGCTGACAAGCTCGTCCGCACGACGTCTCACGCCGTCCGTCGTCACCG
GCTTTATCTCGGACTCCGCCGCCACCACGCCTCCACTGAGCGGCGTTCCCGACCTCGTGCGCGATCGGCTTGATCACCCG
CTCGCCGCGGCGATCCGCCTCATCTACGCTGCGCGACCGACCTGGCCCGTCAGTTACGCGTGCCTCCGCAGGTCCCGTAA
AGATCGTCCCCGAGTTCAGCGCGCCTCTCCACCGATCGAGCATTGGACTGCCGCTGCGTCGCCCCGTCGGGCCGCAGCGC
CGCCGTCCTGTGGTTCTCCTCGCGGCTGCATCGACCCGTGTGTCGCCCCTTCGGGCCGTAGTATCGCGATACATGGTCCC
CGCCGCCGCCCCGAGGCCGTCCACGCGGCTGCATCGACTCGCGAACCGCCGTTGCGTCGCCCCTTCGGGCCGCAGCATTG
CGGCCTGCGGTCCCCGTCGCCGTCCCGAGGTCTTCCTGCTATCGCCCTGACTTGCCCACCGCCGATGCGTCGCCCCTTCT
GGCCGTAGTGCCGCGGCCCGCGGTCCACTTCGCCGTCCCCGCGCATCGACTTCATGCGGTATGCGTCGCGCCGTCTTACT
TGGCGCGGGAACGGCACCGTCCGCGCCGGTCTTCGTCACGCTGTCAGGGTTCTTCGCCTACTTCGAGCATCACCGCCGCG
CTCCTAACCTAGCCGCCGCCGCCGCCATCAGGCCGCTGGCGCCGCTCTTCTTCGGCCGCCGCCGCCGCTACCCCAGTAGT
CGCCGCAGCCGCCCGTCCACCCCCTTCGTCTTCGTCCAGCACCAGCCCGTCGCCAGCGTCGCCGTCATCTACCCCGACCG
CTTCATCTACTCCGACAACCGCGGGCGACATTGGCCCCGCACTGATTGGCGCCGCAACCGTCGTCGAGTCCTTCTTTGTT
GGCCTCTCTGACTTCTTCGACATGGCGTACAACTCGTGCAGGTCCTAGTCTACGCATGCCCAGTGTTGGAAACACCGTCG
CGTGCCCCTTCGTCCACGACATGTCCCCGGGCCTGGCAAGCCTGGTGCGGCGCTTCGTTAACTTCGTCTTCGTCCGTCTA
CGCATGCCTGGTGCTGGCAACACCGACGCGTGCCTTCGTCTACGATGTGTCCCCGGGGTTGACAACCCCGGCGCGACGCG
TCGTCAACATCATCTACTTCCTGGCACACCACTACTTCGACACCACTGCGCCCATGACTAACTCGGCGCCTCCTTGCACC
CGTGGCTCCACGGTGACTTCCTCGACACCGGCTATCCTGACTCGACATCGACCACGGCATTCTTCGCACGGCTACCTCGA
CCACGGCTCCACCACCCACGCTCTCGGCTACATCAACAAACGGCACAAAGGGTTACCGCATTGCTTGAGCAACCTCGTCG
GTTGCCACTCCAGCCACGACTCCGCGATGCATCTACCATTACGACTGTGGGAGGTGTGTCCGTCAGCTTGCCTTCGGATT
CTTCTCCAGCCTCACCGTCTGCGTCGCTACGGTTGTGACTGCGGGGGGATGTTGAGTATATTGATTATTAGGAAAGACGA
GATAGACTAGGATTTGTTCTGGCTTGTCTTGTACTCCAAGTTGGTCATTGTACTCTTATATATATGTCCACGAGGCTCAA
GCAATACAATGAACTATTCCACAAAACCTCTCTCTCCCTTCTAACATCAAAATTTAAAAAGTTTGACTTGGGACAACCCT
AGAACTTCAACTATTTGGAAACGGGTGGAGTAAAAAAAAAGTATTTCCAATGTTTATCAACGTGTTGACAGGCCAAGATA
CGTGAATGCACCGATGCCTACTGCTCTGCGGCTCTGCCTTGGAATCCTTCGTTTCATTCCAGAAGAAACGAGGAGAGGAG
CCGGGCCACGCTGACGAGGCACGAGAAAGCGAGGAGCGGCGAATCTGGGACA-TTGCGGTCGAAGGAATGGGAGGTAGTA
TGAGGTATGCTCTC----CCTCCCCCGTCGGTAACGGTACGTGCTTGGTCCGACGACGAGTCGCGGCTGCCGTTTTCTTT
C-----ATTGAAAACAGTGCCTGTGATGCGTGCGTCGACTCTTTCATTGAATCCCCTTAAATTAGACTGGTGATACATCG
GCATCGTCGCGGTGCTCCGATGATCCCCGTGTCCGCGAAACCGCGTGTACGTGCAGCAGCGCGAGAGACCGGACTCCCGT
ACGCTCCGGCGGCGACTCCCCGG-CCCGATGGCGACCACGGTGGTTGCGCTCGACGTACGCGGTGGTTTTCACAGTTAAA
GACTTGAAACTCACCACTCACCTCAGCCAAATCCATGGAAGTAAACTGGAACCTTGACGTGTAAAATCCAGCCACACCAT
GCGTGATTCTTTTACGTGCGTCGCATGAGATTCGAATGTGCCCTGCCCTGAACTCATGCGTGCATCCTCTGCCACAGAAT
CTTCTCCGCTTACTTGCAAGAAAAGAAAATGAGGAGAGAAAAAA-------------------------AAGCCTCGACG
CCTGCAGCTGAAGTGGACGGAAAAGGACACGTCTTGAAAAGAAATCCTGGGCTTCTAGATCGACCGACCGGGCGTG--CT
CGTCTTGTCCGTCGGCCTTGACCGGGACTGAGCTGCAGATAAAGAGGAGGAGCTTCAGAAAGGACGACCC-ACGGAAGAA
AACAGAGCCAAAAGCGGCACCGAGCAACCGATCGAGCAAAGCACAACACACCACATCACCTCGCGCTCTCTAGCTAGCT-
-----ACATAAGCAGTACGGCCGCACTTCCTTGTCCAGGATCA-----GAGAGCGCCGATCGTCGGACCACGGGCGGCCA
CACGACACCAACACGAGCGAGCCACGGCGCGGTCGAGCGAGGTGCGATGGAGACGCTCGCTGTTGCCGGGGGCAAGCCGC
TGTCGTCGGCGCGGGCGCGGCGGATCGCCAGGAGCCGGGAGGAGATGCTCGGCCTTCTTGCTGATTTCGACGGCGGCGA-
--CGGCTCAGACCGCGAGCTCTCCTTCTCCGACCTCGTCGACGCCGTCAGGCCGCCGCCCCACACCGGCCACGCCTCCGC
GT---CGCCGCCGGCACCAGTCGGGGTCGAAGCGGAGGCGGCCGAGCAGAGGCGGGAGGAGGCCCCGGCACCGAAGCAGA
AGCAAGCGGCGGCGGTGGCGGGAAAGGAGAGAAGGAGGCTGCGGAGACGGCAGAGCGACAACAGGGGCAGCTGCGGAGGA
GGCGCGGACGGCAACGGCGTGCTCCTCAACTTCTACGTGCCGGGGCTGCTCACCCGGAGCATCACGGCGCCGCGCCCCG-
-----GCCGGGGGGTGATGCCGGCCGCGGGAGCACGGCAGAGCGCGCCGCCGACGGTTGCTGCCGGCAAAACCAGGTGAG
GTTTT-CTGACCTCAACTGGCAGTGCATGAGATCTTTCTGCTTCTCGAGATTCGCACCATGGATAGTGCAACAAACTGCA
ACGATTAACATCTCGATTCACAT-ATAATTAGCCATGCAGTCAAACAGACAGTTAACCCCACCCCGGAAAAAGAGTATTA
CCAGTTGC-----------TAATCATGTCGAAATATTTTC------TAGTCGAGAGAGTCATAGCAGCTGTAGGCTTTAG
CTATAGCTA-T---------------------------------------------------------------------
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------------------------------------------------------------AGTGAAGTCTA--------A
CTGGTACGTTTGCACTGAATATTTTCAACTGTATC----GAATTTTCTTGTGTTCACATGATAATAATA--------AAC
ACATTTCACAACCATTATAAATGCCCA-TTAGTCATGTCATTATTTCCAACCCCACAAC-----AAAAGCAAATTGCGTG
GCCACGAAAATTCGTTCTCCAACAAACGGGTTTT--------------------------------AAAAAGACAAAACA
CTAATCACTGCACTTTTGGTCAGAAAAAAAACAATAACCAATATACTACCGCTGTAGTAGTAGTAGTAGTATATGCATTT
TTCTAAGGGTTTCAGTTTCTTTGACAATTCCAAGACCCCTC-TCCTTTAGACCACATGATTAAACCTTTTGACTTTGCTT
GCTCTTC------AGAGAAAATGGGACAACTCAGTACCTGGGATATGAAA--GGAACAGTGAACCTGACAATGTGACCAT
AGTACA------------------------------------------------------------------CATAAATA
CGCAGATTACAGATATCTATATATTGTCAATTAACCTAACAATGTGTCCATAGTGCTTGCAAGCAAAACTGCGTTTTACA
CGATCAACACCAATGCTCATTTCAGATGACGATGGGCCATGACTGTACAAACCTAACCTACTTATGTCCAAATCTTTCAG
GATGCAGGCGTCGCTGGACATCGGCTGCTGGCCGGCGCTGTGGGGCAGAGGCCGCGACCACCACCACCGTAACAAGCCAG
TCTGAGAGTCTTCTTCTTCTTCCATGCACATACAGCCGGTGTAGTGGTACCACTACTTGTAGCTTGAGACTTGTTGTGCA
GCTAATCCGAGCCTTCTTTTT-CTGCTCACACATGTAAATTATTATCTCCTGTTTTTGTGAACGTGGTTTGCGTTGGCGC
CTTGT---TTAAACTCCGTTGGTGTG---------GTTGCGTGAGTGTGATCTTTCTTTCTCGAAAGGCAGGCAGCCACG
GACGGACATGTCAACTGTAGGCTTACTTTGTCGCTTTGTGACTTTGCGAGATCCGGCGGTGCTGTTGAGTGAGAGCACGC
GATGCTACTTTTCGACAGGCCGCCTCACGTTGCCCGTGGCGTGCCGCTGAAGCGATGCATG--CAAAGCTCGCACAAAAA
GGCAGAACCAACTGAAATCTCGGCGGTGCGTACGTACGTGACCTCGCTTTCAGTTTCAGCAGGCGATAGATAAATCGAGG
CTGGGTGG-------TGAGTGGTG--------ACACAAGACATGAAAACGATTGCTGTGATTCAGCTGACTGAATCTACT
ACTACCAGCTAGCAGCCTAGTACGGTCTT--------------------GCCGTCGTTGTAGCTTGGCTGGTTTTCTGCC
T-----------CACGACTGCGTCCAA-CCAGATACGATACCACTGCCG------ATACCGGCCCGCTGAAGTCAAGACA
AGAGACAACGAGATAGA----------------------CAGATAGTGTCAAACGATGCCGACGGCACACGGCACAGCAT
GACACGTAGCATACCAAGGTGGCGACGTAGCAGGGACAAGGCAACTGCGGCAATATGTGCATCCAGTCCATTGGTTCAGC
TAGCGTGGCTAGTCCATCGAGGTGGCAATCACAAACTCTGTTCAT---------TGTGAAGAAACAGCAAACGTTGCATT
AGGATTCAGAGCCA----TATTACAAACCTGCTACTAAGATCTCAAGTCCACCGTAAG----GCGCAACAAACTGACTAC
CGAATTAACCCGACACAGACCAACTACACAACCAGCAACAAGTCCACAACCCCCCGAAGATT---GGGGCCAGCAAGCGC
GAAACACACAC-----------TACTAGTAGCGACATGGAGCCATCAGAAATAGCCCCTGACCGAGCACGCACACGATCA
CGGAGGAACACAGACCTCGCTCGCTCGCCCCTACTCCTGGAGGTCGGCGTCGTCCTCGTCCTCGTACAGCTCCTCCTCCT
CGTCGGCGGTGGCGTCCTGGTACTGCTGGTACTCGGCGACCAGGTCGTTCAT
>chr1D_162
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--------------------CTACTCCACCTTA--------GAAGCCTTCGTTTCATTCCAGAAGAAATGGGGAGAGGAG
CCTGATGACGCCGACGAGGCACGTGAAAGCGAGCGGCGGAGAATCTGGGACATTTGCGGTCCAAGGAACGGGAGGTATA-
----------------CTCCTCCTCCGTCGGTAACGGTGCGTGCTTGGTCCGACGACGAGTCACGGCTGCCGTATTCTTT
C-----ATTGAAAAC----CCTGTGATGCGTGCGTCCACTCTTTCATTGAACCCCCTTAAATCCGGCGGGTGATATGTCG
TCATCGGCGCGGTGCTCCGACGATCCCCGTGTCCGCGAAACCGCGTGTACGTGCAGCAGCGCGAGAGACCGGACTCCCGT
ACGCTCCGGCGGCGACCCCCCCGTCCCGACGGCGACCACGGTGGTTGCGCTCGACGTACGGGGCAGTTTTTACAGTT-AA
GACTTGAAACTCACCACTCACCTCAGCCAAATCCATGCAAGTAAACTGGAATTTGAC---GTGAAATCCAGCCACACGAT
GCGTGATTCTTTTACGTGCATCCCATGAGACTCA-------------------------------CCTCTGCCACAGAAT
CTT---CTCTTACTTGCAAGAAAAGAAGATGAGAAGAAAAAATAGAGTGACCGCAACTCAGCAGAAAAGAAGCCTCGCCG
TCTGCAGCTGAAGTGGAC----------ACGTCTTGAAAAGAAATCCTGGGCTTCTAGATCGACCGACCGGGCGCGCTCT
CGTCTTGTCCGTCGGCCTTGACCCGGACTGAGCTGCAGATAAAGAGGAGGAGCTTCACAAAGGACGACCCGACGGAAGAA
AACAGAGCCAAAAGCGGCACCGAGCAACCGGTCGAGCAAAGCGCACCGCGTCACATCATCTCGAGCGCGCTCTCTAGCTA
G--CTACATAAGCAGCGCGGCGGCACTTCCTTGTCCAGGAGGA-----GAGAGCGCCGATCGCCGGACCACAGGCGGCCA
CACGACACCAGCACGAGCGAGCCACGGCGCGGTCGACCGAGGCGCGATGGAAGCGCTCGCTGTCGCTGGTGGCAAGCCGC
TGTCGGGGGCGCGGGCGCGGCGGATCGCCAGGAGCCGGGAGGAGATGCTGGGCCTCCTTGCTGACTTCGACGGCGGCGA-
--CGGCTCCGACCGCGAGCTCTCCTTCTCCGACCTCGTCGACGCCGTCAGGCCGCCGCCCAACGCCGGCCACGCCTCGGT
GT---CGCTGCCGGCACCAGTCGGGGTCGAAGCAGAGGCGGCCGAGCAGAGGCGGGAGGATGCCCCGCCGTCCAAGAAGC
AGCAGCA------GGCGGCGGGGAAGGAGAAGAGGAGGCTGCGGAGGCGGCCGAGCGACAACAGGGGCAGCTGCGGAGGA
GGCGCGGACGGCAACGGCGTGCTGCTCAACTTCTACGTTCCGGGGCTGCTCACCCGGAGCATGACGGCGCCGCGCCCCGG
CCCCGGCCGGGGGCTGATGCCGGCCGCGGGGACCCGGCAGAGCGCGCCGCCGACGGTTGCTGCCGGCAAAACCAGGTGAG
GTTTTTCTGTCCTCAACTGGCAGTGCATGAGATCCTTGTGCTTCTCGAGATTCGCACTATGGATA-------------CA
ATGATTAACATCTCGATTCACTACATAATTAGCCGTGCAGTCAAACAGTCAGTTAACCCCACCCCCGAAAAAGAGTATTA
CCAGTTGC-----------TAATCGTGTCCAGTTATTTTCTACGAGTAGTCGTGAGTGTCGTAGCAGCTGTAGAGTTGCT
TTTGGCTAGCT---------------------------------------------------------------------
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------------------------------------------------------------AGTGAAGTCTG--------A
CTGGTATGGCTGCACTGAATATCTGCAGCTGCATCG---GATTTTTCTTGTGTTCACATGATAATAATA--------AAC
ACATTTCGCAACCATTATAAATGCTCA-TTAGTCATGTCATTATTTCCAACCCCACAACCACAAAAAAGCAAATTGCGTG
GCCACGAAAATTCTTTCTCCAACAAACGGGTTTTTTTAGGGTAACAAACGGGCTTTATAATAAAATAAAAGGACCAAACA
CTAATCACTACACTTTTGGTCA-AAAAAAAACAATAATCAATATACTACCACTGCAGTAGTACTG------TATGCATTT
TTCTCAGGATCTCGG-TTCTTTGACAATTCCAAGCCCCTCAGTCCTTTAGACCACATGATTAAAGCTTTTGACTTTGGTA
GG----------------AAATGGAACAACTCATGAGCAGGAATATGAAA--GGAACAGTGAACCCGACAATGTGACCAT
AGTGCACAGGAAAAACACAGATTACAGATATCTATATGTTGTGAGTTAACCTGACAATATGACCATGGTACACAGAAATA
CGCAGATTACAGATATTTATATATTGTGAATTAACCTGACAATGTGTCCATAGTGCTCCCAAGCAAAACTGCGTTTTACA
CCAAATGT--------TCATTTCAGATGACGATGGGCCATGAGTGTACAAACCTAACTTACCTATGTGCAAATGTTTCAG
GATGCAGGCGTCGCTGGACATCGGCTGCTGGCCGGCGCTGTGGGGCAGAGGCCGCGACCACCACC---GTAACAAGCCAG
TCTGAGAGTCTTCTTCTTCTTCCATGCACATACAGCCGGTGTAGTGGTACCACTACTTGTAGCCTGAGACTTGTTGTGCA
GCTAATCCGAGCCTTCTTTTTTCTGCTCACACCTGTAAATTATGCT---CTGTTTTTGTAAACGTGGTTTCTGAGTTGGT
GTCTTTTCTTAAACTGCGTTGGTGCT---------GCCGTGTGA----------TCTTTCTCGAAAGGCAGGCAGCCACG
GACGGGCTTGTCAGCTGTAGGCTTACTTTGGCACTTTGTGACTTTGCGAGATCCGGCGGT--------------------
---------------------GCCTCACGTTGCCCGTGGCGTGCCGCTGAAGCGATGCATGTGC--AGCTCACACAAAAA
GGCAGAACCAACCGAAATCTCGGCGGTGCGTACGTACGTGACCTCGCTTTCAGTTTCAGTAGGCGATAGATAAATCGAGG
CTGGGTGGCGAGTGTTGAGTGGTG--------ACACAAGACATGAAAACGATTGCTGTGATCGAGCTGAATCTAGTACG-
-------------------------------------------------------GTTGTAGCTTGGCTGGTTTTCTGGC
GCGCGGCGGAGGCACGTCTGCGTCCAA-CCAGATACGATACCACTGCCACTGCCAGTACCGGCCCGCTGAAATCAAGACA
AGAGACAACGAGATACTGCTGAAATCTCAAGTCAAGTGGCAGATGGTGTCAAACGATGCCGACTGCACAT-------CAT
GGCACGTAACACATCC-----------------------------------ACGGA-TGCATCCAGTCCACTGGTAAAGC
CAATATTGCCCTCGAGGTGGTGGAGCACTTGACAACGACAATCATCACAAACTATGTGAAGAAACAATGAGCC-------
---------AGCCA----TATTGCAAACCTGCTACTAAGACCTCTAGTTCACCGTAACGCACGCGCAACAAACTGACTAC
CGAATTAACCCGACACAGACAAACTAC---ACAAGCAACAAGTCCACGACACCCCGAAGAT---GGGGGCCAGCAAGCGC
GAAACACACACACACACACTACTAGTAGCAGCAACATGGAGCCATCAGAAATAGCCCCCGACTGAGCACGCACGCGATCA
CAGAAGAACCCAGAC----CTCGCACGCCCCTACTCCTGGAGGTCGGCGTCGTCCTCGTCCTCGTACAGCTCCTCCTCCT
CGTCGGCGGTGGCGTCCTGGTACTGCTGGTACTCGGCGACCAGGTCGTTCAT
>SNPs
---S-----------S-----------------S---------------------S-------------SS---------
--------------------------------------------------------------------------------
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---------------------S----------------------------------------------------------
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-------------------------------------------------------S------------------------
----S-----------S--------------------------S-------S---S-SS---------------SSS--S
S-SSSSS-SSSSS-SS----------------------------------------S-SS-------------------S
-SSSSS--------------------------------------------------------------------------
------------S------------------------------------------------------S------------
----------------------------S---------------------------------------S-----------
---------------------------------------------------------------S----------------
--------------------S------------SS-SSS--------S-----------------S--S-----------
S--S-------------------------------SS--SSS-SSS-SSSS-SS------------------S-------
----------------------------S---------------------------------------------------
-----------------------S--------S----------------S----------------------S-------
---SS-----------------------SS-S---S-S---------------------------S--------------
SSS-----------------------SS-----S--S------SSSSS---------------------------S----
-----S--S----------------------------------S-----------------SS-----------------
--------S--------------------S----------------------------S--S-----------------S
SS---------------------------------------------------------------------------S--
--SSS----------------S-------------S-----------------S----------SS--------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
------------S----------------------------S------------------S-------------------
S---------S-S----S-S---S------------------------S------S--------S-SSS-------S---
---------S----SS----S-SSS--------------------S-----S-S--S-SSS-SSSSSS-SS-SSS-SS-S
SSSSSSSSSSSSSSSSSSS---------------S-------------S--SSSSS-S--S--SSSSSSSSSSSS-----
SS--SS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SSSSSSSSS-
--SS------------------S-S---------S-SSS----------S----S-S-SS-SSSSSSSSSSSSSSSS---
----S----------------------S-------S------S-----------S-------------SS-S--------
---S------SS----------------------S------------------------------------------S--
-S-----S-SSS-S------------------------------------------------------------------
S-------------S--S--------------------------------------------------------------
--S--SSSSSSSS---S---S--------------SS---S---------SS-----S-S--SSS-------SS-S--SS
---SSSSSSS---S-SSSS-SSSSSSS-S-SSS-SSSSSSSS--------------------------------------
----S--SSSSSSS-S-SSSS-S--SSSSSS-SS-S-SSSSSSSSSSS-SSSSSSS-SSSS-SS-SS-SS-SSSSSSS-S
SSSSSSS-S-SS-S-----------------------------------------------------S------------
---------------------------------------------------------------------S--------S-
--------------S------------------------------------------S----S----SS---S-------
------S--------S--SS----------S-------------------------------------------------
--------------------S-SSSSSSSSSSSSS---------------------------------------------
--S-----------------------------------------------------------------------------
------S------------------------S------------------------------------------------
S-------------------------------------------------------------------------SS----
------------------SSSSS-SSSSSSSS-----------------------------------------------S
--------------------------SS-SSSSSSSSSSSSSSSSSSSS------S------------------------
--S------------------------S------------S------------------------------------S-S
------------------------------------------SS------------------------------------
---------------S---S--------S-----S-S---SSS-SSSS-SS--S--------------------------
-------------------------S---------S------------------------------------S-------
--------------SSSS--------------------------------------------------------------
--S---------------------------------------------------------SSSS----------------
------------------------------------S---------------------S-S-SSS-SS-SSSS-S----S
SS-S-S-------------------S------------------------------------------------------
----------------------------------------------------
>forward_4129
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-----------------------------TGAGAAAGAAGGGTGACGGC-------------------------------
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>reverse_5533
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------------GTAGCAGGTGAAGTGCTCGT------------------------------------------------
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>forward_4273
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-------------CGTCTTGACCTGGACTGAGG-----------------------------------------------
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>reverse_5546
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-------------------------TGCTCGTTCAGTCGCTGTAG-----------------------------------
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>forward_5448
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--------------------------------------------------------------------CAGTGCTCCCTC
CATGTCAA------------------------------------------------------------------------
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>reverse_7243
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------------------------------------------GAAACTGCGACCGATGCATC------------------
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----------------------------------------------------
