CLUSTAL X (1.81) multiple sequence alignment input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ATCGCCTCTCTCCTCCAATCATCCCCTCCCCCCTCCCCACGCCTTCAGCT chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -TCGCCTCTCTCCTCCAATCA----------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CCAATCCTCCCCCCTCCCCCCTCCCCACGCCTTCTAGAAGATTCCTAGCG chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------G reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 TGTTCTGCCCCCTAAGCTTTAAAAGGGGGTAAACTCTGTCATCCTCTGGA chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 TGTTCTGCCCCCTAAGCTT------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CACTTCATAGTATTTGGCTCGAGCGTAACCGGAGGGTGTTCAAGAACACC chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 TCCCTCCTATCTATGTCTGTAATCGCCAAGGCACAAGACCACTGCCATGA chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 ----------------------------------------ACTGCCATGA reverse_2937 -------------------------------------------------- forward_264 --------------------------------------------CCATGA reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GTAGAGCACGGTGGACAACGGTAGTCTAAAGTGAGTTGTAAAGTAAGTGG chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 GTAGAGCACG---------------------------------------- reverse_2937 -------------------------------------------------- forward_264 GTAGAGCACGGTGG------------------------------------ reverse_2967 -------------------------------------------------- forward_317 -----------------------------------------------TGG reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------G reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 TAGGTGGGTTGGTTTGGGTTGTAGCCTTGTACGTGATGGCGCTGCAAACA chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 TAGGTGGGTTGGTTTGG--------------------------------- reverse_3101 -------------------------------------------------- forward_319 TAGGTGGGTTGGTTTGGGT------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CGGAGGAAAATCTTGTGATTGTAACTTGCTATCTATCTTAATATATAGGC chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ACGCTGATCTCCTGTGTGCTCCAAAAAAAACTTCATTTTAGGTATTTAGA chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ACAATAAAATAGAAAATTTTCAAATCTCACCAAATTTTTTGACCAAGATT chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ATCCTTTATCATCTCCTACTAAAATTCTTTGGAATTTCATCTGGAATGTG chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GGCGAAACTTTTTTCCCTGGCACCAACGCAAATTTCGACCAGTTTTTTCC chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 ---------------CCTGGCACCAACGCAAATTT--------------- reverse_3379 -------------------------------------------------- forward_588 ------------------GGCACCAACGCAAATTTCGA------------ reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CTGGGTACCTACTCGCAAAGGCAAACTTCGAAGTGGGTGACCTAGTTCTT chr7D_618 -----------------AAGGCAAACTTCGAGCTGGGTGACCTAGTTATT chr7A_646 ---------------------------------------------TTCTG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSS--------------SS----------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 AGACAACAAATACTAAGTAATTGTGACTGTTTCTTAGA------------ chr7D_618 AGACAACAGA---TAAGTCATTGTGA--------TAGA------------ chr7A_646 AGACAAGAAA---TAAGTAATTGTGACTGTTTCTTAGAAAACTAATGATA chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs ----------SSS------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ----------------------------------AAACAAATGGTGTAGT chr7D_618 ----------------------------------AAACGAATGGTATAGT chr7A_646 TAGTGTACTATTTGTGATATATTTTTTAAAAAACAAAAGAATGATATAGT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs --------------------------------------S------S---- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GCACTATTTGTGCATCGTAGTGTATGTCTTACACTTTATATGATTGCTCA chr7D_618 GTACAATTTGTGCATCATAGTGTATGTCTTACACTTCATATGATTGCTCA chr7A_646 GTACTATTTGTGTAACATAGTGTACGTCTTACACTTTATATGATCGCTCA chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -S--------------S--------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GCTCTACCTGCGAGTCCTCCAAATGCCAAGACTTACATCAATACTATTGT chr7D_618 GCTCTACCTGCGAGTCATCCAAATGCCAAGACTTCCATCAATACTATTGT chr7A_646 GCTCTACCTTCGAGTCCTCCAAATGCCAAGACTTCCATTAATACTATTGT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs ----------------------------------S--------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 TGAGAGCAATAGCAGA-CGAGCAAATATGTTGAAAAACCCAACGACCCTC chr7D_618 TGAGAGCAATAGCAGA-CGAGCAAATATGTTGAAAAATCCAACGACCCTC chr7A_646 TGAGAGCATAGCAAACGCGAGCAAATATGTTGAAA--TCCAACGACCCTT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------S------------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ATGACTCAGGTGGTGATCAAGTGTTCAGGCATTAAGTCAGCAGTTACCAA chr7D_618 ATGACTCAGGTGGTGCTCAAGTGTTCAAGCATTAACTCAGCAGTTACCAA chr7A_646 ATGACTCAACTGATGCCCAAGTGTTCATCTATTTACTCAGCAGTTACCAA chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs ---------------S-----------S-------S-------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CGAGCAGGGCGTC----TATATATTGGCCAACCTCGCCGCCATTAGATCA chr7D_618 CGAGCAGGGCGTC----TATATATTGGCCAACCTCGCCGCCATTAGACCA chr7A_646 CGAGCAGTGTGTCCATATATATATTGGCCAACCTCGCCACCATTAGATCA chr5B_915 -----------TC----TATATATTCTCCAACCTCGCCGCCATTAGATCA chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CCATC-----------------AGTCCAAGCGAGATCTTTTCAGGCGATT chr7D_618 CCATC-----------------AGTCCAAGCGAGATCTTTTCATGCGATT chr7A_646 CCA-------------------------AGCGAGATCTTTTCAAGTGCTT chr5B_915 CCACCAAGTAAGTTTAATAACTAGTCCAAGCGAAATATTT---------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------S------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ------------------ATGAAGCACCCAAGCTT---CTATTCACGCTC chr7B_1_TraesCS7B01G011600 CAGTATACTGAGCTAGCGATGAAGCACCCAAGCTT---CTATTCACGCTC chr7D_618 TAATAGATTGAGCTAGCCATGAAGCTCCCGAGTTT---CCATTTACGCTC chr7A_646 CAATATATTGAGCCAGCCATGAAGATCCCGAGCTT---CTATTTACGCTC chr5B_915 --------TGAGGTCACCATGAAACTCCCAAGCTTATACTACTTACGTTC chr5D_2082 -------------------------------------------------- SNPs --S----S---------S-------S-----------------S------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ATCGCTGCTCGTGGCTTCCTTAGCCATCCAATTGATCACGGTGACGGC-- chr7B_1_TraesCS7B01G011600 ATCGCTGCTCGTGGCTTCCTTAGCCATCCAATTGATCACGGTGACGGC-- chr7D_618 ATCGCTACTCGTGGCTTCCTTAGTCATCCAACTGATCACGGCAATGGC-- chr7A_646 GTGGGTGCTCGTGGCTTCCTTAGTCATCCAACTGATCACGGCGATGGC-- chr5B_915 ATCGCTGCTCACGGCTTCCTTAGCCATCCAACTGATCACGGTGGCGGCGG chr5D_2082 -------------------------------------------------- SNPs -------------------------------S------------------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -CAGTGGTGGCGGTGGTAGCAGTGGTGTTACGTCATCATCGACGGTGGCG chr7B_1_TraesCS7B01G011600 -CAGTGGTGGCGGTGGTAGCAGTGGTGTTACGTCATCATCGACGGTGGCG chr7D_618 -CAGTAGTGGTGGTGGTAGCAGCGGTGCTGCGTCGTCGAT---GGTGGCC chr7A_646 -CAGTGATGACGGCAGCGGCACTA---------CATCGTCGACGGTGGGG chr5B_915 CCAGTGGTG------------------------CAACATCGTCGACGGCG chr5D_2082 -------------------------------------------------- SNPs ---------------------------S-S-------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 ----------CGGTGGTAGCAGTGGTGTTA-------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GCGCTCAAGAACTACAATGCCATGTTCACCTTCGGTGATTCGATGGATGA chr7B_1_TraesCS7B01G011600 GCGCTCAAGAACTACAATGCCATGTTCACCTTCGGTGATTCGATGGATGA chr7D_618 GCGCTGAAGAAATACAATGCCATGTTCACCTTTGGTGATTCGATGGATGA chr7A_646 GCGCTGAAGAGATACAACGCCATGTTCACCTTCGGTGATTCGATGGATGA chr5B_915 GCACTGAAGAAATACAACGCCATGTTCACCTTCGGTGACTCCATGGATGA chr5D_2082 -------------------------------------------------- SNPs -----S-----S-------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GACCGGCAACATATGCGCCGCCAGCAGCAACAAGACGGAGCTCGACGTGC chr7B_1_TraesCS7B01G011600 GACCGGCAACATATGCGCCGCCAGCAGCAACAAGACGGAGCTCGACGTGC chr7D_618 GACCGGCAACATATGCGCCGCTAGCAGCAACAAGACGGAGCTTGACGTGC chr7A_646 GACCGGCAACATATGCGCCGCCAGCAGCAACAAGACGGAGCTCGATGTGC chr5B_915 GACTGGCAACATATGCGCCGGCAGCAGCAACAAGACGGAGTTGAACGTGC chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TCACTTGCACCCGCTCGCCGTATGGCGAGACCTACTTCGGAAGGCCGGCT chr7B_1_TraesCS7B01G011600 TCACTTGCACCCGCTCGCCGTATGGCGAGACCTACTTCGGAAGGCCGGCT chr7D_618 TCACCTGCACGCACTCGCCGTACGGCGAGACCTACTTCGGAAGGCCGGCT chr7A_646 TGACCTGCACCCACCCGCCGTACGGCGAGACCTACTTCGGAAGGCCGTCT chr5B_915 TCACCTGTACCCACCCGCCCTACGGCGAAACCTACTTCGGAAGGCCGTCT chr5D_2082 -------------------------------------------------- SNPs ----S-------S---------S--------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TGCCGGTGGTGCGACGGCCGCGTGGTTGTTGACTTCATCGGTAAATGCTT chr7B_1_TraesCS7B01G011600 TGCCGGTGGTGCGACGGCCGCGTGGTTGTTGACTTCATCGGTAAATGCTT chr7D_618 TGCCGGTGGTGCGACGGCCGCGTGGTTGTTGACTTCATCGGTAAATGATT chr7A_646 TGCCGGTGGTGTGACGGCCGCGTGGTTGTCGACTTCATCGGTAAGTGATC chr5B_915 TGCCGGTGGTGCGACGGCCGCGTGGTCGTTGACTTCATCGGTAATTCATC chr5D_2082 -------------------------------------------------- SNPs -----------------------------------------------S-- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TTCCAA-------------------------------------------- chr7B_1_TraesCS7B01G011600 TTCCAA-------------------------------------------- chr7D_618 TTCCAA-------------------------------------------- chr7A_646 CGTTTCTACGCGAGTTTTCCAAAGTATTCTGTTTGTTTTATTAAAAAAGT chr5B_915 CGTTTTTA------------------------------------------ chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 -------------------------------------------------- chr7D_618 -------------------------------------------------- chr7A_646 ACTCCCCCTGTAACGCAGTATAAGACATTTTTTGATGTATAGTTGGCTAA chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ----------------------------------------AGTAGCACAG chr7B_1_TraesCS7B01G011600 ----------------------------------------AGTAGCACAG chr7D_618 ----------------------------------------AGTAGCACAG chr7A_646 AATAAACGTTCTATGTTTTGTTACATTTCGTTACAGAGGGAGTAGCACGG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 AGCATGCATACATATTTCG------------------------------- chr7B_1_TraesCS7B01G011600 AGCATGCATACATATTTCG------------------------------- chr7D_618 AGCATGCATACATATTTTG------------------------------- chr7A_646 AGCACGCATACATATTTTTCCATGATGATCTAGCTATACACATCTCAACG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -----------------S-------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 -------------------------------------------------- chr7D_618 -------------------------------------------------- chr7A_646 TAGATGTTGATATTTTTTATATACATTTAGTAAAAGATACAGAGTATAAA chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 -------------------------------------------------- chr7D_618 -------------------------------------------------- chr7A_646 GTTTGACTTAGAAAAAATTCGGACATCTTATAAAAAGAACAATGCAGCAT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 -------------------------------------------------- chr7D_618 -------------------------------------------------- chr7A_646 ATATTAATTAGGGCGCACCAGCACAGTTCTCGACCAAATGAATATTGATC chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -----------------------------ATGACCGGCTTTACATCGAAG chr7B_1_TraesCS7B01G011600 -----------------------------ATGACCGGCTTTACATCGAAG chr7D_618 -----------------------------ATAACCGACTTTACATCGAAG chr7A_646 TGAGGTGCATATATATAGTCTAACTAACAATAACCAACTTTACTTAGAAG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------S----S------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TAGACAGTTCGGACAAG-TTGACAAGGTCTTTTTGGAACTTGGAAGTGTG chr7B_1_TraesCS7B01G011600 TAGACAGTTCGGACAAG-TTGACAAGGTCTTTTTGGAACTTGGAAGTGTG chr7D_618 TAGACAGTTTGGACAGG-TTGACAAGGTTTGGTTGGAACTTGGAAGTGTG chr7A_646 TAGACAGTTTGGACAAGGTTCACAAGGTTTGGTTGGAAGTGT-------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs ---------S------------------S-SS------------------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TGAAAAAATTTAGAAATTTATTCTT-CATTAGGTGCATGCATCT---AAT chr7B_1_TraesCS7B01G011600 TGAAAAAATTTAGAAATTTATTCTT-CATTAGGTGCATGCATCT---AAT chr7D_618 TGAAAAAACTTAGAAATT-ATTTTTCCATTAGGTGCATGCATCTTGTAAT chr7A_646 TTAAAAAACTTAGAAATT-ATTTTT-TATTAGGTGCG----TCTTGTAAT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs --------S---------S---S--------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TTAACCAGCTAAGAGATGTGCTATATTTGAAAATTAATACCAAAAATATA chr7B_1_TraesCS7B01G011600 TTAACCAGCTAAGAGATGTGCTATATTTGAAAATTAATACCAAAAATATA chr7D_618 TTAACCAGCTAAGAGATGTGCTATATTTGAAAATTAATAC---------- chr7A_646 TTCACTAGCTAAGAGATGTGCTAGATTTGGAAACTAATACCAAAAAATAT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs ----------------------------------------------SSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TTGTCTACATTTTTATATTTCCTAACAACCCAATAAAACAATATGTTCTG chr7B_1_TraesCS7B01G011600 TTGTCTACATTTTTATATTTCCTAACAACCCAATAAAACAATATGTTCTG chr7D_618 ----CTACATTATTATATTTCCTAACAACCCAAGAAAATAATTTGTTCTG chr7A_646 T--TCTACATTATTGTATTTCCTTACAGCCCAAGAAAAGAATTTGTTCTG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -SS--------S---------------------S----S---S------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GCCAACATATAAAATGAAGGAATTGAAGTCATGATTCTTGTCATTTTGCA chr7B_1_TraesCS7B01G011600 GCCAACATATAAAATGAAGGAATTGAAGTCATGATTCTTGTCATTTTGCA chr7D_618 GGCAACATATAAGGC----------------------------------- chr7A_646 GCCAACATATAAAATGAAGGAACTGAAGTCATGATTCTTGTCATCTTGTA chr5B_915 -CCAACCAATAAAATGAAGGAAATGAA----TGATTTTTGTCTTCTTTAA chr5D_2082 -------------------------------------------------- SNPs ----------------------S---------------------S---S- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ACCAGAAAATTACTATACCAAATAATTCTTGACAGAAAAGAG-------- chr7B_1_TraesCS7B01G011600 ACCAGAAAATTACTATACCAAATAATTCTTGACAGAAAAGAG-------- chr7D_618 -------------------------------CAACATATTTC-------- chr7A_646 AGCAGACAATTATTATAACAAGCAATTCTTGACAAAAAAGTACTCCCTCC chr5B_915 ACCCAAAAATCACTACAAGAAACAATTCCTGCAAGAAAAGTG-------- chr5D_2082 -------------------------------------------------- SNPs -----------------S----S-----------------S--------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 -------------------------------------------------- chr7D_618 -------------------------------------------------- chr7A_646 GTCCCAAAATTCTTGTCTTAGATTTGTCTAGATACGGATGGATCAAGTCA chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 -------------------------------------------------- chr7D_618 -------------------------------------------------- chr7A_646 CATTTTAGTATTAGATACATCCGTATCTAGACAAATGTAAGACAAAAATT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -----------------TGACCACTATGTT--GAGAATTTTCTG-----T chr7B_1_TraesCS7B01G011600 -----------------TGACCACTATGTT--GAGAATTTTCTG-----T chr7D_618 -----------------CTAACTATGTGTT--GAGAATTTTCTG-----T chr7A_646 TTGGGACGGAGGGAGTATGACCACCATGTTGAGAGAATTTTCTG-----T chr5B_915 -----------------TGACCCTTATGTT--GAGATATTTTGTTTGAAT chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GT---------------------------GAAAAACTTTTTTT------- chr7B_1_TraesCS7B01G011600 GT---------------------------GAAAAACTTTTTTT------- chr7D_618 GTTTGA--------------------TCAGACAAAAGTTTTAA------- chr7A_646 GTTTGATTGACTTGCACATCACCTGATCAGACAAAAGTTTTTTTAAAAA- chr5B_915 GTTTGATCTACTTTCAAATCAACTAA---GACAGAAGTTTGTTATAACTT chr5D_2082 -------------------------------------------------- SNPs -------------------------------S---SS------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -AATTTATTTTTATTTGTCCCTGAATGGCAGCACAAGCACTTGGGCTCCC chr7B_1_TraesCS7B01G011600 -AATTTATTTTTATTTGTCCCTGAATGGCAGCACAAGCACTTGGGCTCCC chr7D_618 -AATTTTATTTTATTTGTCCCTGAATGCCAGCACAAGCACTTGGACTCCC chr7A_646 ------TATTTTTATTGTCCCTGACTGCCAGCACAAGCACTTGGGCTCCC chr5B_915 CAATTTTATTTG---TGTCCATGGATGCCAGCACAAGCACTTGGGCTTCC chr5D_2082 -------------------------------------------------- SNPs ------SS-------------------S---------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ATTTGTCCCACCATCGAAAGCAAAAGGCAAAGATTTTCGGCGCGGTGTAA chr7B_1_TraesCS7B01G011600 ATTTGTCCCACCATCGAAAGCAAAAGGCAAAGATTTTCGGCGCGGTGTAA chr7D_618 ATTTGTCCCACCATCGAAAGCAAAAGGCAAAGATTTTCGGCGTGGCGTAA chr7A_646 ATTTGTCCCACCATCGAAAGCAAAAGGCCAAGATTTTCGGTGCGGCGTAA chr5B_915 ATTACTCCCACCGTCGAAAGCGATAGGCACAGATTTCCGTCGGGGCGTAA chr5D_2082 -------------------------------------------------- SNPs ---------------------------------------------S---- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GCATGGCCATCACCGGCGGCACGGCCATGAACTTCTCCTTCTACAAATCT chr7B_1_TraesCS7B01G011600 GCATGGCCATCACCGGCGGCACGGCCATGAACTTCTCCTTCTACAAATCT chr7D_618 GCATGGCCATTACTGGCGGCACGGCCATGAACTTCTCCTTCTACAAATCT chr7A_646 GCATGGCCATCACCGGCGGCACGGCCATGAACTTCTCCTTCTACAAATCT chr5B_915 ACATGGCCATCACCGGTGGCACGGCCATGAACTTCTCCTTCTACAAAGCT chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 CTCGGCATCGAAGATCCAGTATGGAACCATGGCTCACTGGACACGCAGAT chr7B_1_TraesCS7B01G011600 CTCGGCATCGAAGATCCAGTATGGAACCATGGCTCACTGGACACGCAGAT chr7D_618 CTCGGCATCGAAGATCCAGTGTGGAACCATGGTTCACTAGACACACAGAT chr7A_646 CTCGGCATCGAAGATCCGGTGTGGAACCATGGCTCACTGGACACCCAGAT chr5B_915 CTCGGCGTTGAAGATCCGGTGTGGAACCATGGTTCACTAGACACGCAGAT chr5D_2082 -------------------------------------------------- SNPs --------------------S----------------------------- forward_21 -------------------------------------------------- reverse_2471 --------------------ATGGAACCATGGCTCACTGG---------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 CCAGTGGTTCAAGGAGTTGATGCCCTCCATATGCGGGACTGAACGAAGTG chr7B_1_TraesCS7B01G011600 CCAGTGGTTCAAGGAGTTGATGCCCTCCATATGCGGGACTGAACGAAGTG chr7D_618 CCAGTGGTTCAAGGAGTTGATGCCCTCCATATGCGGGACTGAACGAAGTG chr7A_646 CCAGTGGTTCAAAGTGTTGATGCCCTCCATATGCGGGACACAACAAAGTG chr5B_915 CCAATGGTTCAAGGAGTTGTTGCCGTCCATATGCGGGACAGAGCAGAGTG chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TGCACTTATTC-------TAGTTCTCTTCAGTCTCTTTTCCTGTTGAAAT chr7B_1_TraesCS7B01G011600 TGCACTTATTC-------TAGTTCTCTTCAGTCTCTTTTCCTGTTGAAAT chr7D_618 TGCACTTATTC-------TAGTTCTCTTCGG--TCTTTTCCTGTTGAAAT chr7A_646 AGCGCATACTC-------CAATTTTCGTAGG--TCTTTTGTCTTTGAAAT chr5B_915 AGCATGCACTATTATTCTCAATTTTCTTAAG--ACTTTTTCCTTTGAAGT chr5D_2082 -------------------------------------------------- SNPs -------------------------------SS----------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 AGTCTACTTATCACGAT-----TCCAGG---------------------- chr7B_1_TraesCS7B01G011600 AGTCTACTTATCACGAT-----TCCAGG---------------------- chr7D_618 ATTCTACTTATCACGAT-----TCCAAG---------------------- chr7A_646 GTTCGATTTATAAGTATGTCGGTCCAAA---------------------- chr5B_915 ATTCCATCCAAGTCTCATGCATTATTTTTTAAACAAATTGGCCCTGAGAT chr5D_2082 -------------------------------------------------- SNPs -S------------------------S----------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 -------------------------------------------------- chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 GCCCGCTAGATATGGATGCACCTAATACTAAAACGTAACTTGATACATTC chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ----------------------------------------------TTTC chr7B_1_TraesCS7B01G011600 ----------------------------------------------TTTC chr7D_618 ----------------------------------------------TTTC chr7A_646 ----------------------------------------------TTTA chr5B_915 GCATTTAGACGAATCTAAGACAAGAATTTTGGGACGGAGGGAGTACTTTA chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ATTTCCTA-AA----AGAAGAACTCTAAGCTTAGTTTAAACCGGTATAAA chr7B_1_TraesCS7B01G011600 ATTTCCTA-AA----AGAAGAACTCTAAGCTTAGTTTAAACCGGTATAAA chr7D_618 ATTTCCTA-AA----AGAAGAACTCTC-----AGTTTAAACCGGTATAAA chr7A_646 ATTTAAGCCAA----TGAAGAAGTCTAAATTAACTCGCTTCCTGCC---- chr5B_915 ATTTAACCGGTCCGGTGAAAAAGTCTAAACGTGTTCATTGTTTATGACAT chr5D_2082 -------------------------------------------------- SNPs ----------------------------S--------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GAATAT---------------------------------AAACGTGTTGT chr7B_1_TraesCS7B01G011600 GAATAT---------------------------------AAACGTGTTGT chr7D_618 ATAATATACCC---------------------------------TGTTGT chr7A_646 -------------------------------------------------- chr5B_915 AGCTCACCATTCCTGCCCAACGGTTAAGAAAAGACAGTGAAACGTGTTGC chr5D_2082 ---------------------------------------AAACGTGTTGC SNPs SS--SS-------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -----TAAACGTGTTGTATGTAGGTTGCA--------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ----ATG---TAGGTTGCAAAGGATACCTGAAAGAATCATTGTTCATGTT chr7B_1_TraesCS7B01G011600 ----ATG---TAGGTTGCAAAGGATACCTGAAAGAATCATTGTTCATGTT chr7D_618 ----ATG---TAGGTTGCAAAGGATACCTGAAAGAATCACTGTTCATGTT chr7A_646 -----TG---TAGGTTGCCAAGTGTACCTGCGAAAATCGTTGTTCATGTT chr5B_915 ATGCATGTACTAGGTTGCAAAGGATACCTGAGGAAATCGCTCTTCATGTT chr5D_2082 ----ATGTACTAGGTTGCAAAGGATACGTGAGGAAATCGCTCTTCATGTT SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 CGGTGGATATGGCGGAAACGATTACAACGTGCAGCTACTTGAACTTGGCT chr7B_1_TraesCS7B01G011600 CGGTGGATATGGCGGAAACGATTACAACGTGCAGCTACTTGAACTTGGCT chr7D_618 CGGTGGGTACGGCGGAAACGACTACAACGTGCAACTGCTTGAACTTGGCT chr7A_646 CGGTGGATACGGCGGAAATGATTACAACGTGCAGCTGCTTGAACTTGGCT chr5B_915 CGGTGCATACGGCGGAAACGACTACAACGTGCAGCTGCTTGAACGTGGCT chr5D_2082 CGGTGCATACGGCGGAAACGACTACAACGTGCAGCTGCTTGAACGTGGTT SNPs ---------S--------------------------S------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 ------------------------------------ACTTGAACTTGGCT forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TGACGCCATTGCAGGCGATGAACTACACCCCAAAGATCGTCACTGCCATC chr7B_1_TraesCS7B01G011600 TGACGCCATTGCAGGCGATGAACTACACCCCAAAGATCGTCACTGCCATC chr7D_618 TGACGCCATTGCAGGCAATGAACTACACCCCAAAGATCGTCACTGCCATC chr7A_646 TGACACCAGAGCAGGCAATGAACTACACCCCAAAGATCGTCAGTGCCATC chr5B_915 TGACACCGGAGCAGGCAACGAACTACACCCCAAAGATCGTTGGTGCCATC chr5D_2082 TGACACCGGAGCAGGCAATGAACTACACCCCAAAGATCGTTGGTGCCATC SNPs ----------------S--------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 TGACGC-------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 ----------------GATGAACTACACCCCAAAGATCG----------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GCTAATGGTGTCGAGGT---------------------------GACCGC chr7B_1_TraesCS7B01G011600 GCTAATGGTGTCGAGGT---------------------------GACCGC chr7D_618 GCTAATGGTGTCGAGGTACATGCGGT---------------ATTGACCGC chr7A_646 GCTAACGGCATTGAGGTATGTA-------------TGTACCATTAACTGC chr5B_915 GCCAACGGCGTGGAGGTATCTATTTCTATGTCTTGTGTACCATTGACAGC chr5D_2082 GCCAACGGCGTGGTGGTATTTC-------------TATGCCATTGACAGC SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 ----------------------------------------GTCGAGGTGA reverse_4368 -------------------------------------------------- input_sequence_40884 AAATT----CTGCATGTTGCAGTCTAGAGTTCTAGACTAAATGTTCCAGT chr7B_1_TraesCS7B01G011600 AAATT----CTGCATGTTGCAGTCTAGAGTTCTAGACTAAATGTTCCAGT chr7D_618 AAATT----TTGCATGTTGCAGTCTAGAGTTCTAGACTAAATGTTC---- chr7A_646 AATGT--------------------------------TACATGCTCCAGT chr5B_915 AAATT----TTGCATGCA-------------------TGTAAGTTCCAGC chr5D_2082 AAATTAATTTTGAATGCA-------------------TATATGTTCCAGC SNPs ---------S---------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 CCGCAAATTC---------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GATACGTACGCA---------------GCCATGCATTTTTGTGCGCAGAA chr7B_1_TraesCS7B01G011600 GATACGTACGCA---------------GCCATGCATTTTTGTGCGCAGAA chr7D_618 -------ACGCA---------------GCCATGCATTTTTGTGCGCAGAA chr7A_646 TAAGTTGCTCCACTGACACCTGATTTCGCCATGCATTTTTGTACACAGAA chr5B_915 CAGGAAAGACTCCGGAGGA-------A----------TTCTTGTGCAGAA chr5D_2082 TAGCCAAGAAAGACTCAAGGCGAATTA----------TTTTTGTGCAGAA SNPs S-SS-SS------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 GATACGTACGCAGCCATGC------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ACTGATTGCTCTTGGCGCCGTCCACGTGGTTGTCCCGGGCATCTTCCCGA chr7B_1_TraesCS7B01G011600 ACTGATTGCTCTTGGCGCCGTCCACGTGGTTGTCCCGGGCATCTTCCCGA chr7D_618 ACTGATTGCTCTTGGCGCCGTGCACGTGGTCGTCCCGGGCATCTTCCCAA chr7A_646 ACTGATTGCTCTTGGCGCCGTGCACGTGGTCGTACCGGGCATATTCCCGA chr5B_915 ACTGATTGCTCTCGGCGCCGTCCACGTCGTCGTCCCGGGAATCTTCCCGA chr5D_2082 ACTGATTGCTCTCGGCGCCGTCCACGTCGTCGTCCCGGGAATCTTCCCGA SNPs ------------------------------S------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 ------------------------------TGTCCCGGGCATCTTCCC-- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 CGGGCTGCCTCCCGATCTTCCTGTCCCTCTTCGGCGACGCCGCCGGCGAG chr7B_1_TraesCS7B01G011600 CGGGCTGCCTCCCGATCTTCCTGTCCCTCTTCGGCGACGCCGCCGGCGAG chr7D_618 CGGGCTGCCTCCCGATCTTCCTGTCCCTCTTCGGCGACGCCGCCAGCGAG chr7A_646 CGGGCTGCCTCCCGATCTTCCTGTCCCTCTTCGGCGACGCCGCCAGCGAG chr5B_915 CCGGCTGCTTGCCGATCTTCCTGTCCTTGTTCGGCGACGGCGACT----- chr5D_2082 CCGGCTGCTTGCCGATCTTCCTGTCCTTGTTCGGCGACGGCGACGCCGAC SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ACCGACTTCGACGGCACAGGCTGCCTCAAGCCGCACAACCGCCTGACCGA chr7B_1_TraesCS7B01G011600 ACCGACTTCGACGGCACAGGCTGCCTCAAGCCGCACAACCGCCTGACCGA chr7D_618 ACCGACTTCAACGACACCGGCTGCCTCAAGCCCTACAACCGCCTGACCGA chr7A_646 ACCGACTTCGACAACACCGGCTGCCTCAAGCCCTACAACCGCCTGACCGA chr5B_915 -TG------GACGACACCGGCTGCCTCAAGGCCTACAACCTCCTGACCAG chr5D_2082 CTG------GACGACGCCGGCTGCCTCAAGGCCTACAACCTCCTGACCAA SNPs -------------S---S--------------SS---------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GTACCACAACTCGTTGCTCCGTAAGCAGGTGGACGCCCTCCAGCGGAAGC chr7B_1_TraesCS7B01G011600 GTACCACAACTCGTTGCTCCGTAAGCAGGTGGACGCCCTCCAGCGGAAGC chr7D_618 GTACCACAACTCGCTGCTCCGGAAGCAGGTGGACGCCCTCCAGCGCAAGC chr7A_646 GTACCACAACTCGTTGCTCCGGAAGCAGGTGGACGCCCTCCAGCGGAAGC chr5B_915 GTACCACAACTCGATGCTCCGGAAGCAGGTGGAAGCCCTCCAGCGGAAGC chr5D_2082 GTACCACAACTCGATGCTCCGGAAGCAGGTGGAAGCCCTCCAGCGGAGGC SNPs ---------------------S---------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ATCACAACTCGACGAGGATCATGTACGCCGACTACTACAGCCTCGTGTAC chr7B_1_TraesCS7B01G011600 ATCACAACTCGACGAGGATCATGTACGCCGACTACTACAGCCTCGTGTAC chr7D_618 ACCACAACTCGACGAGGATCATGTACGCGGACTACTACGGCCTCGTGTAC chr7A_646 ACCACAACTCGGCGAGGATCATGTACGCGGACTACTACGGCCTCGTGTAT chr5B_915 ACCGCAACTCGACGAGGCTCATGTACGCAGACTACTACGGCCTCGTGTAC chr5D_2082 ACCGCAACTCGACGAGGCTCATGTACGCGGACTACTACGGCCTCGTGTAC SNPs -S--------------------------S---------S----------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 ----------------------------CGACTACTACAGCCTCGTGT-- forward_588 -------------------------------------------------- reverse_3389 --------------------------------------AGCCTCGTGTAC forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 CAGATGGTCCAGGAGCCCGAGAAGTTCGGTGAGTTTCCTTGGTATATATT chr7B_1_TraesCS7B01G011600 CAGATGGTCCAGGAGCCCGAGAAGTTCGGTGAGTTTCCTTGGTATATATT chr7D_618 CGGATGGTCCAGGAGCCCGAGAAGTTCGGTAGGTGCCCTTCG----TTTT chr7A_646 CGGATGGTCCAGGAGCCAGAGAAGTTCGGTAAGTTTCCTTCG----TATT chr5B_915 CAGATGGTCCAGGAGCCCCACAAGTTTGGT-------------------- chr5D_2082 CAGATGGTCCAGGAGCCCCACAAGTTTGGT-------------------- SNPs ------------------------------S---------S-SSSS---- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 CAGATGG------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 CTTGTGAAAT-CATTGACAAGACAACCGATCTGATTGGGTTGGTTGTGTG chr7B_1_TraesCS7B01G011600 CTTGTGAAAT-CATTGACAAGACAACCGATCTGATTGGGTTGGTTGTGTG chr7D_618 CTTGTGAAAAACATGGAGAAATGGATTAATCTTAAT-GGTTGGTTGTGTG chr7A_646 CTTGTGAAAT-CGTGGAGAAATCTATCGATCTTATTAGGTTGGTTGTGTG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs --------------S--S--SS-S-S------S---S------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TTTGTTATGTCGATTGGTCCCTAGGGTTTAGCAAGCCATTCGAGGCGTGC chr7B_1_TraesCS7B01G011600 TTTGTTATGTCGATTGGTCCCTAGGGTTTAGCAAGCCATTCGAGGCGTGC chr7D_618 TT-GTTATGTCGATTGGTCCCTAGGGTTTAGCAAGCCGTTCGAGGCATGC chr7A_646 GT-CTTATGTCGATTGGTCCCTAGGGTTTACCAAGCCATTCGAGGCGTGC chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs --S----------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TGCGGGGCTGGAGGGGGGAAGTACAACTTCGACGTCACCGCGAGGTGCGG chr7B_1_TraesCS7B01G011600 TGCGGGGCTGGAGGGGGGAAGTACAACTTCGACGTCACCGCGAGGTGCGG chr7D_618 TGCGGGGCGGGAGGGGGGAAGTACAACTTCGACGTCACCGCGAGGTGCGG chr7A_646 TGCGGGGCGGGAGGGGGGAAGTACAACTTCGACGTCACCGCGAGGTGCGG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs --------S----------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 CATGGAGGGGGCGACCACCGCGTGCCGCGACCCGTCGACGCGGCTGAGCT chr7B_1_TraesCS7B01G011600 CATGGAGGGGGCGACCACCGCGTGCCGCGACCCGTCGACGCGGCTGAGCT chr7D_618 CATGGAGGGGGCGACCACCGCGTGCAGCGACCCGTCGACGCGGCTGAGCT chr7A_646 TATGGAGGGGGCCACCACCGCGTGCAGCGACCCGTCGACGCGGATGAGCT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------S------------------------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 GGGACGGCATCCACCCGACGGAGGAGGTGAACAAGGTGATCGCCGGCGCA chr7B_1_TraesCS7B01G011600 GGGACGGCATCCACCCGACGGAGGAGGTGAACAAGGTGATCGCCGGCGCA chr7D_618 GGGACGGCATCCACCCGACCGAGGAGGTGAACAAGGTGATCGCCGGCGCA chr7A_646 GGGACGGCATCCACCCAACGGAGGAGGTGAACAAGGTGATCACCGGCGCA chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 TTGCTCAGGGGCCCCTATTGTACCCCTCCGATCCTAGGCTGA-------- chr7B_1_TraesCS7B01G011600 TTGCTCAGGGGCCCCTATTGTACCCCTCCGATCCTAGGCTGAAGCCGCCG chr7D_618 TTGCTCAGGGGACCCTATTGCACCCCTCCGATCTTAGGCTGAATCGGCCG chr7A_646 TTGCTCAGAGGACCCTATTGCACCCCTCCAATACTAGGCTGAAGCCGCCG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -----------S--------S----------------------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -----------CCCCTATTGTACCCCTCCGA------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 AAGCTTATGCGTC---------AAACGGAGTCAGACTGAGAAAACTTGTG chr7D_618 AAGCTTATGCGTCGTCACATGGAAATGGAGTTAGGCTCAGAAAACTTGTG chr7A_646 AAGCTTATGCGTCGTCGCATGGAAACAGAGTCAGACTCAGAAAACTTGTG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -------------------------------------S------------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ACCAAGCTGGGAATAA-AGCGATACACGCGCTTGTGGCGCCGTGAAAGCT chr7D_618 ATCAAGCTGAGAATAAACA-GATACGCGCGCTAGTGGCGCTGTGGAATCT chr7A_646 ATCAAGCTGAGAATAAAAGCGATACACGCGCTGCTGGCGCCGTGAAATTC chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -S-------S----------------------S--------------S-- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CGTTCTTTTATTTTGGGAGTGCTCAATCGACTAAGGATAATTCTCACTCA chr7D_618 CTTTCGTGTCTAGGT------CTAAGTTGAATGAGGATAATACTCACTCA chr7A_646 TCAC---------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs -S---S-S-S-SSSSSSSSSS--S-S-S--S-S--------S-------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GATTTATATAAATCTGTTCATGCATAATACTCCCTCAAT----------- chr7D_618 -ATTTATATAAATTTGTTCATG---------------------------- chr7A_646 ---TTATATAAATTTGTTCATATATAATACTCACTCCGTTCCACATTAAT chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs S------------S--------S---------S---SS------------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 --------------------------GACAACTAATATGGAATGGAGGGA chr7D_618 -------------------------------------------------- chr7A_646 TATGGCTTAGTACAAAGTTGAACTAGGACAACTAATATGGAACGGGAGGG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs ------------------------------------------S--SS--S forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GTACATAAGAAAAGTTCACCATGCTAAAAAAATGTTCATATAT--GCCCA chr7D_618 -------------------------------------------------- chr7A_646 ATACATAAGAAAAGTTCATCGTGCTAAAAATATGTACATATCTACGCCCG chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs S-----------------S-S---------S----S-----S-------S forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 AAGCGTTGCTAGGAGGTCTCACGAAGCAACTAGAAACCCTAGCCACCAAC chr7D_618 -------------------------------------------------- chr7A_646 AATCGTTGCTAGGAGGTCTCACAAAGCGGCTAGAAACCCTAGCCGCCAAC chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs --S-------------------S----SS---------------S----- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CCATCTATCGCCACTCTCGCCGTCGCCAGAGTGCTCGCCGAGCAAAGCCC chr7D_618 -------------------------------------------------- chr7A_646 CCATTTACCGCCGCTCTTGCCGCCGCCAGAGCGCTCACCGAGCAAAGCCC chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs ----S--S----S----S----S--------S----S------------- forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GCGCGGCACCATTGACGACAGGGTGATTCTGACTTGGGGAGCTTGGTGGA chr7D_618 -------------------------------------------------- chr7A_646 ATGCTGCACCCATGATGGCAGATAGGTTCTGATATGGAGAGCTTGGTGGA chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SS--S-----SS---S-S---SSS-S------SS---S------------ forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GCAGAGGTAGCCTTTGTGCATGGTTTGGGGCGGCGGCGTTGTCCTCCCTG chr7D_618 -------------------------------------------------- chr7A_646 GCAGAGATAGCCTTTGTGTTTGGTTTGGGGCGGCGGGTTGTCCTC----- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs ------S-----------SS----------------SS-SSS-SSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CCCTATCCGTGTTTCATTGATGTGGTTAGCACCGGCAGAGTGCGTGTGGA chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GGTGTGTCTCCGATGGGTTCTTGGGATCCGGTCAGTTTCGGTCTCCAGTG chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 AATCTGCCTGGATTCGACCGACACTCGTGGTCTTTGAAGTTTTCATAGGC chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -----------------CCGACACTCGTGGTCTTTGA------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 CTTTTTTGACATATTCTTCTTTGGGTCGGCGATTTGCTATGCAGATCGCG chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GTTGTCGGCGTTTTCTGGTCTACATCGACAATTTCCCGACGGGTTTAAAC chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 AAGTTTGCTCCGCCGAGATGAAGGCCCAGTGGCAGCAACAATCTTTGCTC chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ACAGCACACCGGGGTGGATATATGAAGAAGAAGATTTTGATACCCCTAAA chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 GATTTGGGTGTAATTTTCCTTTTTAATGGTGTATTTCTAAGGATTTGTGA chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 TACTTATTATATGGCCTTATGCCTTTCTGCAAAAAAAAAGTGCTCATCTC chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 -------------------------------------------------- chr7B_1_TraesCS7B01G011600 ATATAAAAGGTAAAAATCGTTGTGTCTATTTTTATAGAGCTTAGAAAAAA chr7D_618 -------------------------------------------------- chr7A_646 -------------------------------------------------- chr5B_915 -------------------------------------------------- chr5D_2082 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 -------------------------------------------------- reverse_2471 -------------------------------------------------- forward_119 -------------------------------------------------- reverse_2806 -------------------------------------------------- forward_260 -------------------------------------------------- reverse_2937 -------------------------------------------------- forward_264 -------------------------------------------------- reverse_2967 -------------------------------------------------- forward_317 -------------------------------------------------- reverse_3101 -------------------------------------------------- forward_319 -------------------------------------------------- reverse_3181 -------------------------------------------------- forward_585 -------------------------------------------------- reverse_3379 -------------------------------------------------- forward_588 -------------------------------------------------- reverse_3389 -------------------------------------------------- forward_1180 -------------------------------------------------- reverse_3712 -------------------------------------------------- forward_3060 -------------------------------------------------- reverse_4368 -------------------------------------------------- input_sequence_40884 ----------------------------------------- chr7B_1_TraesCS7B01G011600 TTTAGAACTTCCACAGATCTCAACATCAACATCGCTGAGCC chr7D_618 ----------------------------------------- chr7A_646 ----------------------------------------- chr5B_915 ----------------------------------------- chr5D_2082 ----------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_21 ----------------------------------------- reverse_2471 ----------------------------------------- forward_119 ----------------------------------------- reverse_2806 ----------------------------------------- forward_260 ----------------------------------------- reverse_2937 ----------------------------------------- forward_264 ----------------------------------------- reverse_2967 ----------------------------------------- forward_317 ----------------------------------------- reverse_3101 ----------------------------------------- forward_319 ----------------------------------------- reverse_3181 ----------------------------------------- forward_585 ----------------------------------------- reverse_3379 ----------------------------------------- forward_588 ----------------------------------------- reverse_3389 ----------------------------------------- forward_1180 ----------------------------------------- reverse_3712 ----------------------------------------- forward_3060 ----------------------------------------- reverse_4368 -----------------------------------------