>input_sequence_40820
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--------------------------------------------------------ATGCCGCCGCCGATGGGAATGCGG
GCGCTTCTGCTGCTCCTGCTCCTTGCCTTCGCCGCCGGCACGTCCAGTGCCGCCCCTAGCGGAGCAAGCCCGATCAAGAA
CGTGGTGGTGCTGGCGCTGGAGAACCGGTCCTTCGACCACATGCTGGGCTGGATGCGCCGCCTGCTCGGCCTCCCCATCG
ACGGCCTCACCGGCGCCGAGTGCAACGCCGACCCCACCAACTCCTCCCTCCCGCCCGTCTGCGTCTCCTCCGACGCCTCC
CTCGTCGTCCCCGACGACCCCGGCCACTCCTTCGAGGACGTGCTCGACCAGGTCTTCGGGTTCCGCCCCAACTCCACCGC
CGGCGCCGCCGACCAGCCGGCTCCCCCCACCATGTCGGGCTTCGTGCGCTCCGCGCTCTCCGTCAACTCCCTGCTCTCCT
CCGCCGTCATGCGGGGCTTCACCCCGTCCCTCCTCCCGGCCTTCTCCGCGCTCGCCGCCGACTTCGCCGTGTTCGACCGC
TGGTTCTCCTCCCTCCCGGGCCCCACGCAGCCCAACCGCCTCTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCGCCCA
CGACAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTCGACTCCCTCGCCGCCGATGGCCGCCGCTTCAACG
TCTACTTCAAGACCATCCCCACCACCCTCTTCTACCGCAACCTTCGCACCGTGCGCGCCGCCGCCCAGAGCTTCCACTTC
TACGACTCCGCATTCAGGGACCACGCCCGGAGGGGGCGGCTGCCAGCGCTGTCCGTCATCGAGCCCAGGTACTTCGACCT
CACCGGCACGCCCGCCGACGACGACCACCCGGCACACGACGTCGCCAACGGGCAGAGGCTCGTCAAGGACGTCTACGATA
CGCTGCGGGCCAGCCCGCAGTGGAACGACACCCTGCTCATCGTCACCTACGACGAGCACGGCGGCTTCTACGACCACGTC
GCCACTCCCGTCGCCGGCGTGCCCAGCCCCGACGGCCTCAGGGGCCCCGTGCCATTCTTCTTCAAGTTCGACCGGCTCGG
GGTCAGGGTGCCCACAATGATGGTATCGCCGTGGATCAAGAAGGGGACGGTGGTGGGGCGGCCGCCGAACGGGCCGACGG
CGACATCCGAGTACGAGCACTCCTCCATCCCGGCGACCATCAAGAAGATCTTCAACCTCAGATCTGATTTCCTCACCAAG
AGAGACGAATGGGCAGGCACATTTGAGCACATCTTCACCCAACTCGACCAACCAAGGACAGATTGCCCAGGTACTACCAC
TGAGGATCTCTCACATAAACACAATGGGGAA--TTTGGCAGATTTATAGTCAGAGTTCACTTAATTTAGCAGAATTATAA
-----------------------------------TCACATTTCACTTAATTTGGATCCTCTCTACTTACTACTACTGAG
GATCTCTCACATGAACACAATGGAGAATTCATTTCAGCAGAATCATAGTCATCAC--TTCCACTTATTCAGATGCTCTCT
ACATAATTTGAAGCTT--AGAGTATGAATGAAGAATGGGAAATTTGGCAGAACTACAGTCACAATTCACTTAATTTGGAT
GCTCTCTGCTTAATTTGG-------------------GAAACTTTGTTCTGTTTTCATCCTTTACAGAGACTTTGCCAGA
AGTGCCATTTGAGAGAGCAACACCAGCGAAAGAGCACGGAATTCTCTCGGATTTCCAGCGTGAGCTCATCGAATTAGCAA
GCTTCTTGAACGGCGACTACATGTTGACAAGTTCCGCTCAGGAGACGCAGAAAAAGATGACCGTGAAGCAGGCCGACGCA
TACGTGAGACGAGCCATCAAAGGTTTTCTGCAGGCAAGCAAGCAGGCCAGGCGATTAGGCGCAAATGAGTCTGCAATTGT
TACCATGAGGTCATCTTTGACAAGTAAGAGTACCACCTCAAGTCCTTAA-------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>chr3D_1_TraesCS3D01G083000
ACCTTGGACCACATCGAATTGACATGCATCTTCGCAAGAACGGTATGGAGGACCTTGTGCACCACGATCAGCAAGCCGTC
CTGGACGCCCAC---GGGCCACGGCACATGACACATTGGCAGGTTGGTGCGCGAACAAGCCAAAGAACATGCGCATCATC
ATAACCATAGTATTATGGGAGCTTTGGA-GCATCCTATGGCCGTTTCTCCCTCGCTTGATGGGCTCACTGAGAGGATAAT
GGCGGAAAGGAATGACTGGCATCGTGTTGGATTGCTTAAGGGAGACTGAAACGGCGTAGCAGCGGAGCTATTAAGGTGGG
CGAGCGACGAGTAGTCCTAGATTATGTTCGTCTCCGAGTAGACATAGGAGCTTGGCTCATGATAGTTTATATGTACTCCC
TCCGTTTCTTTTTACTCCGCATATAAAATTTGGTCAAAGTCAAACTACACAAAGTTTGACCAACTTTATAT-AAAAAATA
TGAACGTCTCCAATACTAAAACTATATAGTAGTATGAAAATACATTCAATGGGGCATCTGATAATATTAGTTTCATATTA
TAAATGTTGATATTTTTTAA--ATATAAAGTTAGTCAAACTTTATAAAGCTTGACTTTGACCAAACTTTATATGCAGACT
AAAAAGAAACGGAGGGAGTAACATCTATGGTGGACTTGGGTTCTCTATCCACCCATTTCTATAAAATATGACACGCAAGC
TCGTGCGTATTCGAGAAAAAAATTAGATGATTTTCGGAAAGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TTTTTTGTCACACGAGATGAACGGCCGACTACTTACTGATA
CGGTCGTACGCCACAACTTCCAACATGTAACACGGGAATACGCAGGGCCCAACAGTACATGGGCCCAACATATTAAAATA
TTCGAGTAGAGGTT---TGGACCGAATACCGCCAAAAGCAGCCAGGCCAGCCCAACTTCCCTTCCTCTCCGTGCTCCTCC
GCTCGTACACTCCCTCAC-CA--------CTCACCGCCACCGCCACCGCCACGGCAATGCCGCCGCCGATGGGAATGCGG
GCGCTTCTGCTGCTCCTGCTCCTTGCCTTCGCCGCCGGCACGTCCAGTGCCGCCCCTAGCGGAGCAAGCCCGATCAAGAA
CGTGGTGGTGCTGGCGCTGGAGAACCGGTCCTTCGACCACATGCTGGGCTGGATGCGCCGCCTGCTCGGCCTCCCCATCG
ACGGCCTCACCGGCGCCGAGTGCAACGCCGACCCCACCAACTCCTCCCTCCCGCCCGTCTGCGTCTCCTCCGACGCCTCC
CTCGTCGTCCCCGACGACCCCGGCCACTCCTTCGAGGACGTGCTCGACCAGGTCTTCGGGTTCCGCCCCAACTCCACCGC
CGGCGCCGCCGACCAGCCGGCTCCCCCCACCATGTCGGGCTTCGTGCGCTCCGCGCTCTCCGTCAACTCCCTGCTCTCCT
CCGCCGTCATGCGGGGCTTCACCCCGTCCCTCCTCCCGGCCTTCTCCGCGCTCGCCGCCGACTTCGCCGTGTTCGACCGC
TGGTTCTCCTCCCTCCCGGGCCCCACGCAGCCCAACCGCCTCTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCGCCCA
CGACAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTCGACTCCCTCGCCGCCGATGGCCGCCGCTTCAACG
TCTACTTCAAGACCATCCCCACCACCCTCTTCTACCGCAACCTTCGCACCGTGCGCGCCGCCGCCCAGAGCTTCCACTTC
TACGACTCCGCATTCAGGGACCACGCCCGGAGGGGGCGGCTGCCAGCGCTGTCCGTCATCGAGCCCAGGTACTTCGACCT
CACCGGCACGCCCGCCGACGACGACCACCCGGCACACGACGTCGCCAACGGGCAGAGGCTCGTCAAGGACGTCTACGATA
CGCTGCGGGCCAGCCCGCAGTGGAACGACACCCTGCTCATCGTCACCTACGACGAGCACGGCGGCTTCTACGACCACGTC
GCCACTCCCGTCGCCGGCGTGCCCAGCCCCGACGGCCTCAGGGGCCCCGTGCCATTCTTCTTCAAGTTCGACCGGCTCGG
GGTCAGGGTGCCCACAATGATGGTATCGCCGTGGATCAAGAAGGGGACGGTGGTGGGGCGGCCGCCGAACGGGCCGACGG
CGACATCCGAGTACGAGCACTCCTCCATCCCGGCGACCATCAAGAAGATCTTCAACCTCAGATCTGATTTCCTCACCAAG
AGAGACGAATGGGCAGGCACATTTGAGCACATCTTCACCCAACTCGACCAACCAAGGACAGATTGCCCAGGTACTACCAC
TGAGGATCTCTCACATAAACACAATGGGGAA--TTTGGCAGATTTATAGTCAGAGTTCACTTAATTTAGCAGAATTATAA
-----------------------------------TCACATTTCACTTAATTTGGATCCTCTCTACTTACTACTACTGAG
GATCTCTCACATGAACACAATGGAGAATTCATTTCAGCAGAATCATAGTCATCAC--TTCCACTTATTCAGATGCTCTCT
ACATAATTTGAAGCTT--AGAGTATGAATGAAGAATGGGAAATTTGGCAGAACTACAGTCACAATTCACTTAATTTGGAT
GCTCTCTGCTTAATTTGG-------------------GAAACTTTGTTCTGTTTTCATCCTTTACAGAGACTTTGCCAGA
AGTGCCATTTGAGAGAGCAACACCAGCGAAAGAGCACGGAATTCTCTCGGATTTCCAGCGTGAGCTCATCGAATTAGCAA
GCTTCTTGAACGGCGACTACATGTTGACAAGTTCCGCTCAGGAGACGCAGAAAAAGATGACCGTGAAGCAGGCCGACGCA
TACGTGAGACGAGCCATCAAAGGTTTTCTGCAGGCAAGCAAGCAGGCCAGGCGATTAGGCGCAAATGAGTCTGCAATTGT
TACCATGAGGTCATCTTTGACAAGTAAGAGTACCACCTCAAGTCCTTAACTAGATAAGTGTACTTTGC----AGGCTAGC
ATCTACAATATTGTGAAATATTAG--TATATATGAAATGCCATGTAACATGATCATATTCATAACTGAATAGGGGGCTCC
AAGAGCCTTCGTAATATAGCTCTGTTTGCCAATGTAATACTCATTTGTACCTTG-AAATGTAGAGTGCGCATCCGTGGAT
CATTTCCTTGAATTTTGTTATAGAGGAACATATTAT-------------------------------------ATATAAC
AAAAGTTTACTGAGGACAATTGTCTTTGACAAATGATTGCCTGGGGTGCTTTGTTTGTTT----TAGTTTATTGTTCACT
GAGACTGATTGGAGGGGTGTATAAAATTTATCTTCTTATTTATATATTTTAGAGTGGACATTGTTTGGTTTATATGGGCC
ACAAGTCCATAACCCATTGAGCTTCTGGTATCTCAAC--CTCTATGGCAAAGCCTATTAAGTAGTCAGCATTCCAGTCG-
TATTTGTACTTCTGTGAGCATGATCATCTGAAACACTAGCATAGCAGACACAGAAGGGGAGGAATCAGGAGTAGTAACTA
---GTTGGTTGACCCAGTGTTGGATGCCTGGATTCGCCAAGAGCCTTGTGACATAATTATAACTGAATATGGGCCTTCAA
GAGCCTTCATGATACAGCCCTGTTTGCCAATATAACTAATTTTTACATTGAAATGTAATGC---TGTGTGGACCATTTGC
TTGAATCTCGTTAGAGAGGAACATATTATATCTATAATGAAAAATTACGGAGGGCAATTCTCGTTGGCAA-ATGATTACC
TATGGTGCTTTGCTTTAAATTTGTTGTTCACTGAGAAAGTTAGACTGACTGGAGGGATGTATGATTTCAAGTT--GGACA
TAATCAAGCTTATCCTGTTATCTTTTCATTTTAGATTGGCCATGGTTTGGTTCATATGGATCATAACCCATTGGGCTTCT
TATATCTCAATGTTTCTTCTGCAAAGCCCAGCTAGTGCAGTGGCAGCTATTGAGGAGAGATCTATCCTG
>chr3A_1
ACTTTGGACAACATCGAATTGACATGGGTCTTCGCAAGGACGGTATGGAGGACCTTGTGCACCACGATCGGCAAACCGTC
CTGGACGCCCACGGGGGGCCACGGCACATGACACATTGGCAGGTTGGTGCATGAACAAGCCAAAGAACACGCGCATCATC
GTAACCATAGTATTATGGGAGCTTTGGAAGCATCATATTATCGCTTCTCCCTCGCTTGACGGGCTCATTGAGAGGATAGT
GGCGGAAAGGAACGACTGGCATCGTGCTGGATTGCTTAAGGGAGACTGGAACGGCGTAGCAGCCAAGCTATTAAGGTGGG
CGAGCGGCGAGTAGTCCTAGATTATGTTCTTCTCCGAGTAGACATGGAAGCTTGGCTCATGATAGTTTATATGTACTCCC
TCCGTTTTCCTTTACTCCGCGTATAAAATTTGGTCAAAGTCAAACTACACAAAGTTTGACCAACTTTATATCAAAAAATA
TGAACCTCTCCAATACTAAAACTATA---TAGTATGAAAATACATTCAATGGGGCATCTGATAATATTTGTTTCATATTA
TGAATATTGATATTCTTTTAATATATAAAGTTAGTCAAACTTTATAAATCTTGGATTTGACTAAACTTTATATACAGACT
AAAAAACCGA--AGGGAGTAACATCTATGGTGGATTTGGGTTCTCTACCCATCTTTTTCTATAAAATATGACACCCAAGT
T-GTGCGTGTTCAAGAAAAAATTTGGATGATTTTTGGAAAGATTTCTTTTTTGAAAAGAATGTTTTTATTTATACACTGG
ACCCAGCAATATAACTCCGGCATAAATTCACCCCAAACAACAGGGGTCTCGGCCAAACCATAACCATACCTCGCAAGAAC
ATGCGCTACACTATTGCACATATGACGACAATGCTGAAAATGAAAGCACTCGAAAGATATAAAACAGCGACTCCTTGCTT
CTCTAATCAGGTCCTCGATCTCTAATAAATCTGAAAGATTTTTTTGTCACACGAGATGAACGGCCGACTACTTACTGACA
CGGTC---------------------GTAGCACGGGAATACGCAGGGCCCAACAGTACATGGGCCCAACATATTAAAGTA
TTCTA-------------GGAGTGTATACCGCCAAAAGCAGCCAGGCCAGCCCAACTTCCCTTGCTCTCCGTGCTCC---
GCTCGTCCACTCCCTCACTCA--------CTCACCGCCACCGCCACCGCCGCGGCAATGCCGCCGCCGATGGGAATGCGG
GCGCTGCTGATGCTCCTGCTTCTCGCCTTCGCCGCCGGCACGTCCAGTGCCGCACCTAGCGGAGCAAGCCCGATCAAGAA
CGTGGTGGTGCTGGCGCTGGAGAACCGGTCCTTCGACCACATGCTGGGCTGGATGCGCCGCCTGCTCGGCCTCCCCATCG
ACGGCCTCACCGGCGCCGAGTGCAACGTCGACCCCACCAACTCCTCCCTCCCGCCCGTCTGCGTCTCCGCCGACGCCTCC
CTCGTCGTCCCCGACGACCCCGGCCACTCCTTCGAGGACGTGCTCGACCAGGTCTTCGGCTTCCGCCCCAACTCCACCGC
CGGCGCCGCCGACCAGCCGGCTCCCCCCACCATGTCGGGCTTCGTCCGCTCCGCGCTCTCCGTCAACGCCCTGCTCTCCT
CCGCCGTCATGCGGGGCTTCACCCCGTCCCTCCTCCCGGCCTTCTCCGCGCTCGCCGCCGACTTCGCCGTCTTCGACCGC
TGGTTCTCCTCCCTCCCGGGCCCGACCCAGCCCAACCGCCTCTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCGCCCA
CGACAAGTGGAACCTCCTCCGCGGCTACCCGCAGCGCACCATCTTCGACTCCCTCGCCGCCGACGGCCGCCGCTTCAACG
TCTACTTCAAGACCATCCCCACCACCCTCTTCTACCGCAACCTCCGCACCGTGCGCGCCGCCGCCCAGAGCTTCCACTTC
TACGACTCCGCATTCAGGGACCACGCCCGGAGGGGGCGGCTCCCGGCGCTGTCCGTCATCGAGCCCAGGTACTTCGACCT
CACCGGCACGCCCGCCGACGACGACCACCCGGCGCACGACGTCGCCAACGGGCAGAGGCTCGTCAAGGACGTGTACGAGA
CGCTGCGGGCCAGCCCGCAGTGGAACGACACCCTGCTCATCGTCACCTACGACGAGCACGGCGGCTTCTACGACCACGTC
GCCACGCCCGTCGCCGGCGTGCCCAGCCCCGACGGCCTCAGGGGCCCCGTCCCCTTCTTCTTCAAGTTCGACCGGCTCGG
GGTCAGAGTGCCCACAATGATGGTATCGCCGTGGATCAAGAAGGGGACGGTGGTGGGGCGGCCGCCGAACGGGCCGACGG
CGACATCCGAGTACGAGCACTCCTCCATCCCGGCCACCATCAAGAAGATCTTCAACCTCAGATCCGACTTCCTCACGAAA
AGGGATGAATGGGCAGGCACATTTGAGCACATCTTCACCCAGCTTGACCAACCAAGGACAGATTGCCCAGGTACTGCTAC
GGAGGATCTCTCACATGAACACGATGGGGAAATTTTGGCAGATTTATAGTCAGAGTTCACTTAATTTAGAAGAATTATAG
TCAGAGCTCACTTAATTTAGCAGAATCATACTAGTTCACATTTCACTTAATTTGGATCCTCTCTACTTAATACTACTGAG
GATCTCTCACATGAACACAACGGGGAATTCATTTCAGCAGAATCATAGTCATCACAATTCCACTTATTCAGATGCTCTCT
ACATAGTTTGAAGCTC-AAGAGTATGAATGAAGAATGGAAAATTTGGCAGAACTATAGTCACAATTCACTTAATTTGGAT
GCTCTCTGCTTAATTTGAAGCTTACAGTATGAATGAAGAAACTTTGTTCTGTTTTCATCCTTTACAGAGACTTTGCCAGA
AGTGCCATTTGAGAGAACAACACCAGCGAAAGACCACGGAATTCTCTCGGATTTCCAGCGTGAGCTCGTCGAATTAGCAA
GCTTCTTGAACGGCGACTACATGTTGACGAGCTCCGCTCAGGAGACGCAGAAAAAGATGACCGTGAAGCAGGCCGACACG
TATGTGAGACGAGCCATCACAGGTTTTCTGCAGGCAAGCAGGCAGGCCAGACGGTTAGGCGCAAATGAGTCTGCAATTGT
TACCATGAGGTCATCTTTGACAAGTAAGAGTACCACCTCAAGTCATTAATTAGATAAGTCAAAGGCTTAGCAAGGCTAGC
ATCTACAATGTTGTGAAATATTAGTATATATATGAAATGCCATGTAACACAGTT------ATAACCGAATAGGGGGCTGC
AAGAACCTTAACTGTATAGCCCCTTTTGCCAATGTAATACTCATTTTTACCTCAAAAATGTAGAGTGCACATCTGGGGAT
CATTTCCTTGAATTTCGTTATGGAGGAACACATTATTATATAGTATTCATTACCGAGGAACATATTATTATATATATAAC
AAAAAATTACGGAGGACAATTGTCTTTGACAAATGATTACCTGCGGTGTTTGTTTGTTTTACAGTAGTTTATTGTTCACT
GAGACTCATTGGGGGGATGCATAAAATTTATCTTCTTTTTTATTTATTTTAGAGTGGACATTGTTTGGTTTATATGGGCC
A--------TAACCCATTGAGCTTCTGATATCTCAACCTCTCTATGGCAAAGCCTATTAAGTAGTCAACATTTCGATCAT
TATTTGTACTTCTGTGAGCATGATCATCTGAAACACTAGTATAGCAGACACAGAAGAGGGGGAATCAGGAGTAGTAACTA
---GTTGGTTGACCCAGTGCTGGATGCCTGGATCGGTCAAGTACCTTGTGACATACCTATAACTGAATAGGGGCCTCCGG
TAGCCTTCATGATACAGCCCTGTTTGCCAATTTAACTAACTTTTACATTGAAATGTAATGCACATGTGCGGACCATTTGC
TTGAATTTTGTTACAGAGGAACATATTATCTCTATAACGATAAATTACGGGGGACATTTGTCTTTGGGAAAATGGTTACC
TATGGTGCTTTGCTTTAAATTTGTTGTTCACTGAGAAAGTTAGACAGGCTGGAGGGATGTATGATTTCAAGTTATGGACA
TAATCAAGCTTAGCTTCTTACTTATTCATTTTTAATTGGCCACGGTTTGGTTCATGTGGATCATAACCCATTGGGCTTCT
TATATCACAATGTTTCTTCTGCAAAGCCCAGCTAGTGCAGTGGCAGCTATTGAGGAGGGATCTATTCTG
>chr3B_740
--------------------------------------------------------------------------------
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--------------------------ATGATTTTCGGGAAGCTG------------------------------------
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------------------------------------------TTTGTCACACGAGATGAACGGCCGACTACTTACTGACA
CGGTCGTACGCCACAACTTGT-ACATGTAGCACGGGAATACGCAGGGCCCAACAGTTCATGGGCCCAACAGATTAAAATA
AATATTCGAGTACGAACTGGACCGGATACCGCCAAAAGAGGCCAGGCCAGCCCAACTTCCCTTCCTCTCCGTGCTCC---
G--CGTCCACTCCCTCACTCACTCACCGGCTCACCGCCACCGCCACCGCCACGGTAATGCCGCCGCCGATGGGAATGCGG
GCGCTTCTGCTGCTCCTGATGCTCGCCTTCGCCGCCGGCACGACCAGTGCCCGCCCTAGCGGAGAAAGCCCGATCAAGAA
CGTGGTGGTGCTGGCGCTGGAGAACCGGTCCTTCGACCACATGCTGGGCTGGATGCGCCGCCTGCTCGGCCTCCCCATCG
ACGGCCTCACCGGCGCCGAGTGCAACGTCGACCCCACCAACTCCTCCCTCCCGCCCGTCTGCGTCTCCGCCGACGCCTCC
CTCGTCGTCCCCGACGACCCCGGCCACTCCTTCGAGGACGTGCTCGACCAGGTCTTCGGGTTCCGCCCCAACTCCACCGC
CGGCGCCGCCGACCAGCCGGATCCCCCCACCATGTCGGGCTTCGTGCGCTCCGCGCTCTCCGTCAACTCCCTGCTCTCCT
CCGCCGTCATGCGGGGCTTCACCCCGTCCCTCCTCCCGGCCTTCTCCGCGCTCGCCGCCGACTTCGCCGTCTTCGACCGC
TGGTTCTCCTCCCTCCCGGGCCCCACGCAGCCCAACCGCCTCTTCCTCTACTCCGCCACCTCCCACGGCGCCGTCGCGCA
CGACAAGTGGAACCTCCTCCGCGGCTACCCGCAGCACACCATCTTCGACTCCCTCGCCGCCGACGGCCGCCGCTTCAACG
TCTACTTCAAGACCATCCCCACCACCCTCTTCTACCGCAACCTCCGCACCGTGCGCGCCGCCGCCCAGAGCTTCCACTTC
TACGACTCCGCATTCAGGGACCACGCCCGGAGGGGGCGGCTGCCGGCGCTGTCCGTCATCGAGCCCAGGTACTTCGACCT
CACCGGCACACCCGCCGACGACGACCACCCGGCCCACGACGTCGCCAACGGGCAGAGGCTCGTCAAGGACGTGTACGAGA
CGCTGCGGGCCAGCCCGCAGTGGAACGACACCCTGCTCATCGTCACCTACGACGAGCACGGCGGCTTCTACGACCACGTC
GCCACGCCCGTCGCCGGCGTGCCCAGCCCCGACGGCCTCAGGGGCCCCGTCCCCTTCTTCTTCAAGTTCGACCGGCTCGG
GGTCAGGGTGCCCACAATGATGGTGTCGCCGTGGATCAAGAAGGGGACGGTGGTGGGGCGACCGCCGAACGGGCCGACGG
CCACATCCGAGTACGAGCACTCCTCCATCCCGGCGACCATCAAGAAGATCTTCAACCTCAGATCTGATTTCCTCACCAAA
AGAGACGAATGGGCAGGCACATTTGAGCACATCTTCACCCAACTCGACCAACCAAGGACAGATTGCCCAGGTACTACTAC
TGAGGATCTCTCACATGAACACAATGGGGAA--TTTGGCAGATTTATAGTCAGAGTTCACTTAATTTAGAAGTATTATAG
TCAGATTTCACTTAATTTAGCAGAATTATAG----TCACATTTCACTTAATTTGGATCCTCTCTACTTAATACTACCGAG
GATCTCTCACATGAACACAATGGGGAATTCATTTCAGCAGAATCATGGTCATCACAATTCCACTTATTCAGATGCTCTCT
ACATAATTTGAAGCTTAAAGAGTATGAATGAAGAATGGGAAATTTGGCAGAACTATAGTCACAATTCACTTAATTTGGAT
GCTCTCTGCTTAGTTTGAAGCTTACAGTATGAATGAAGAAACTTTGTTCTGTTTTCATCCTTTACAGAGACTTTGCCAGA
AGTACCATTTGAGAGAACAACCCCAGCGAAAGAACACGGAATTCTCTCGGATTTCCAGCGTGAGCTCGTCGAATTAGCAA
GCTTCTTGAACGGCGACTACATGTTGACGAGTTCCACTCAGGAGACGCAGAAAAAGATGACCGTGAAGCAGGCCGACACA
TATGTGAGACGAGCCATCAAAGGTTTTCTGCAGGCAAGTAAGCAGGCCAGACGATTAGGCGCAAATGAGTCTGCAATTGT
TACCATGAGGTCATCTTTGACAAGTAAGAGTACCACCACAAGTCCTTAATTAGATAACTCAAAGGCTTAGCAAGGCTAGC
ATCTATGATGTTGTGAAATATTAG--TATATATGAAATGCCATGTAACACAATT------ATAACCGAATAGGGGGCTGC
AAGAACCTTAACTGTATAGCCCCTTTTGCCAATGTAATACTCATTTTTACCTCAAAAATGTAGAGTGCACATCTGGGGA-
-ATTTCCTTGAATTTCGTTATGGAGGAACACATTATTATAT---ATTCATTACCGAGGAACATATTATTATATATA--AC
AAAAAATTACGGAGGACAATTGTCTTTGACAAATGATTACCTGGGGTG-TTTGTTTGTTT----TAGTTTATTGTTCACT
GAGACTGGTTGGAGGGATGTATAAAATTTATCTTCTTATTTATTTATTTTAGAGTGGACATTGTTTGGTATATATGGGCC
A--------TAACCCATTGAGCTTCTGATATCTCAACCTCTCTATGGCAAAGCCTATTAAGTAGTCAACATTTCGATCGT
TATTTGTACTTCTGTGAGCATGATCATCTGGAACACTAGCATAGCAGACACAGAAGAGGGGGAATCAGGAGTAGTAACTA
GTAGTTGGTTGACCCAGTGCTGGATGCCTGGATCGGTCAAGTACCTTGTGACATAATTATAACTGAATAGGGGCCTCCGA
GAGCCTTCATGATACAGCCCTGATTGCCTATGTAGCTAACTTTTACATTGAAATGTAATGCACATGTGTGGACCATTTGC
TTGAATTTCGTTACAGAGGAACATATTATATCTATAACGAGAAATTACGGGGGACAATTGTCTTTGGGCAAATGGTTACC
TATGGTGCTTTGTGTTAAATTTGTTGTTCACTGAGAAAGTTAGACTGATTGGAGGGATGTGTGATTTCAAGTTATGGACA
TAATCAAGCTTAGGTTCTTATCTTTTCATTTTAGATTGGCCATGGTTTGGTTCAAATGGATCATAACCCATTGGGCTTCT
TATATCTCAATGTTTCTTCTGCAAAGCATAGCTAGTGCAGTGGCAGCTATTGAGGAGGGATCTATTCTG
>SNPs
--S------S----------------SS----------S------------------------------S----S-----
--------------------------------------------------SS-----------------S----------
S---------------------------------S---SSS--S---------------S-------S----------S-
------------S-------------S---------------------S--------------SS---------------
------S----------------------S---------------S-S--------------------------------
-------SSS----------S-----------------------------------------------------------
-----S--------------------SSS---------------------------------------S-----------
-S---S--------S---S-----------------------------S----SS------S-----------S------
-----SSSSSSS----------------------S------------S---S-SS-------------------S----S
-S------S---S--------S--S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-------------------SSS-------S--------------------------------------------------
---S-SSSSSSSSS----------S----------------------------------------------------SSS
------S-------------------------------------------------------------------------
--------------------S--S--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-------------------------------------------S------------------------------------
--------------------------------------------S-----------------------------------
---------------------------------S--------------------------------------S-----S-
--------------------------------------------------------------------------------
-----S--------------------------------------------S--S--------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
-----------------------------------------------------------------------------S--
----------------S----------------------------------------------------S---------S
---------------------------------------------------------------------S----------
-----------------------S--------------------------------------------------------
-------------------------------------------------------S------------------------
-----------------S--------------------------------------------------------------
----------------S----------------S---------------------------------S------------
----------------------------S------------------------------------------------S--
--S-----------------------------------------------S-----------------------------
-------------------------------------------------S---------SS-SSSSSS------------
---------S---------------------------------------SS--SSSSSSS-----S------------S-
----S----SSSSS------S-SS----------------------S-----SS--------------S----S-S----
---------------S-----S--------S-------------------------------------------------
----SS----S---------------------------S---------S-------------------------------
----------------S--------------------------S------------------------------------
-SSSSSSSS------------------S---------------------------------------S----S-SS----
--------------------------------------------------------S--S--------------------
-------------------S-------------SS-S----SS--------------------------S------S-S-
-------------------------------S-------S----------------------------------------
------S------S-----------------------S--S---------S--S-----S--S----S------S-----
--------------------------------------------------------------------------------
------------S-S-S---------------------------------------------------------------
---------------------------------------------------------S-------S---
>forward_220
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----------------------------------------CCGTTTCTCCCTCGCTTGAT--------------------
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>reverse_1751
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----------------------------------------------------------------------GTTCGACCGC
TGGTTCTCC-----------------------------------------------------------------------
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---------------------------------------------------------------------
>forward_327
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-------------------------------------------------------------------CTATTAAGGTGGG
CGAGCGA-------------------------------------------------------------------------
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>reverse_2480
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-------------------------------------------------------------------------------G
AGAGACGAATGGGCAGGC--------------------------------------------------------------
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>forward_1062
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--GTCGTACGCCACAACTTCCA----------------------------------------------------------
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>reverse_3118
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-----------------------------------------------------------------------------GCA
TACGTGAGACGAGCCAT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>forward_3069
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ACGGCGACTACATGTTGACA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>reverse_4051
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AGGGCAATTCTCGTTGGCAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
