>input_sequence_40786
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-----------------------------------------------------------------------GCCTCCGGT
CGCCGCCATGGCCGCGAGCGTCGAGCAAGTCCTTGGGTGGTTCCCCGGCATCGACGCCATCGCCAGGATTAGGGATGCCT
CCCTCTCCGCTGTCCCGGGC---TACGCCAGCGAGGACCGCATCAGCGCCCTCCAAGACCACCTCCTCCGCGACATCGTG
TCCCGCCTCCCCGTCAAGGACGCCGCCCGCACGGCCGCGCTCGCCTCCCGCTGGCGCCAGCTCTGGCGCTCCACGCCGCT
CGTCATGTACGACGCCCACCTCCTCCCAGCCGGCGACCCCGCGCGCGTCGCCGCCGTCGCCCGCATCCTCGCCGACCACC
CGGGCCCCTTCCGCACCGTCAGCATCACCTGCTGCAATTTCGCGTCGCACGAGCGTGAGCTCGCCGAGTGGCCGCGCCTC
CTCGCCGCCAAGGGCGTCCAGGACCTCGTCCTCGTCAACAAGCCCGCCGACGACGAACGCC---------TCCCCGACGT
CCCCGCCGACATCCTCCGCTGCGCCTCGCTCCGGCGCCTCTTCCTGGGATTCTGGACGTTCCCGGACACCGGCGTCAGCC
CACCCGGTGGAGG---------CGCAGACGGATTTCCACACCTCCGGGAGCTCAGCTT----------------------
--------------------GCTCGCCTCCAGCCCCGTTCTCGACACCCTCGCGCTCGTCCTCAGCCCAACCTGCGAGCG
CGTCCACCTCCGCAGCCAAAGCCTCAAGTGCGTGCTCCTCTGGGAGTGCTTCGTGAAGGAGGTCCTCGTCATGGACTCCC
CGCTCCTGGAGCGGCTCATTATGTGGAAAACCATTGATGGTGAAGACGACCCGGTGGCTGTGAGGGTCAGCATTGCTGAC
GCGCCGAAGCTGCGGGTGCTGGGTTACTTGGAGCCGAGAGTTCACCAGCTGCAGATTGGTGAGAATGTCATCAAGGTACT
ACCTTTCAATGCATCTCACTTTCAGTAATGGCATTCCATATTCCAATCTGTATCCACATTTTGAAATA---CTAGAAGGA
GCATGGCCTCTTCATT-------------------------------------------ATGCGATGCACATAGCAAAAC
ATTTCTCTCGGTGTGTCAACTGATGTGTGAATCTTGTATTTGATCATTGTACCGACGTAATGAAGTATGATCTCTCTTT-
-CTTTTGGTGGATTGCATTGCAGCCTGATACAATGGTGAGCCCAAGCACCGTGTTTCCAAGCGTCAAGACATTGGCCTTG
AAGGTGAACTTTGGTGTCTTTGAGGAGGTCAAGATGCTGGCCTGTGTCCTCAGATGCTTTCCCGAAGTTGACAGGCTGCA
CATCGAGGTGACTTCTTTGTACCCTCCTGTACTGCACATTCCTTCAGTCAGCCGTTCGGCATTCATATCATAGATTATCT
GTCACCG-----AGGTGATTAAACTACTGTCCACTTTTACCA-----TTTTGCAGTCTGTCACGGCCAATGAACCCACTG
AATTGCACCATGCTGAGTTCTGGCAAGAGGTCCATCCTATCGAATGTGTGAAGTCACACGTCAAGAAGGTGGTTATCCAT
GAATTCCGCGGAAAACAAAGCGAAAATGAATTCCTCGAGTTTGTTAGCAGCAGTGCAGAGAAGCTGCGGTCTTTGCTTGT
TGTGATTACCCAAGAAATGTTTGCGTCGGCATGGGATTTCTCAATTTCATTGCCAAATGAGGTGAATGAGGTGATTGTCA
AAGCAGGGGCTCTAACGCGTGGAGCATGGGCCTGCGAGGACTGTCAACTGGTGGTGGCGGGTCCTAAAGTGTTGGATGGT
TGGAACTTCCGCAGAGCGTCTGATCCCTGTGTTAAGGACCCTTTCCGCTGATGCACTTGAAGAAGCAGAGCACTCCTTCA
GGTACCATGAGCAGCTGCAAGTGTTCAAGTTAGCTGAAACTGATGTTTAATTTGACATGTTATGCACTGTGTGTGATCAA
CATTGATCTGTCTTTGATGCTGATAGAAGTAAAAGACATGCAGTTAG---------------------------------
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>chr3D_1_TraesCS3D01G129700
TGTGTCAGATAGTTTTTTAAATGACATGAAGATTCTTCCG-AAAAATGTCCCGGACACTTTTTTTTAATTATACTAAGGT
TTTC-TATTTGCGTAAACATTA-TAAAATGCAACGGACACCTTTTAAATTACATGAACATTCTTAAATGATTCAACCAAC
TTTTTAATTACGTTATTTTTT-TCTTTCAAACACTTCTTAATTGCATAATTACTTTTCTAATCACCTATTTTTCATGAAT
TTATTTTTTTCAATTACGTACAATTTTTAGAATGCTCCGAACACTTTCTCTAGTTACATGAATACTTTTTCAAAGATGTG
TCGAACATCTTTTTCATTAATATGATTTTTTT--TAATTTC-ATAACTAATTTTAAAATACATCAAATAGTTTGG---TA
CAAGATTTTTTTTCTAAATGGTTGGAACACCTTTTGAATGAC--------------------------------ATTTTA
ATTACATGAGCATTTTTATAATTGCATAAAA----AACCAAATATTAATTTAATTACATTAATGTTGTTTTTAAAAAATG
TTACAAACACTTTTTAATTCAATGAGTATTTTTATAAGTACAT-AGCATATTAAAATTCATCAAACAGTTTTTAAATTAC
AA-GAATTTTTCAAATGGTTCGAACACTTGTTAAACCACGTGAACCTTTTTAATGTTTCAAACTGTTTTTGCAA-AATGT
TTCAAAGGCCCTTTATAATTTCATGAATATTTTTCTATTTGTGTAAACACTTTTTTGTATCTAACACTTTTTAAATTACA
TGATTTTTTTAAATGTCTTCAATATTTTTA-AAATTACATGAAACACAGCATGCTCGGCAAGAACATTC-----------
-----------------CATCTTTTTTTTCTTTTGGACAA--------------------------------AAGAACAT
TCCATCTCGGTGGACCGGCAACGCATGCAGCTACATGGGCCGGTGGGCAACCAGCTTTCCGAGATTTGGTAGGCCCAAGG
TTTCTTACTCCTCCACCAGCGGAGCCAGCCA-CCACCACACCCCTCCCACTCCATTCCGGCCAAAACCCTCGCCTCCGGT
CGCCGCCATGGCCGCGAGCGTCGAGCAAGTCCTTGGGTGGTTCCCCGGCATCGACGCCATCGCCAGGATTAGGGATGCCT
CCCTCTCCGCTGTCCCGGGC---TACGCCAGCGAGGACCGCATCAGCGCCCTCCAAGACCACCTCCTCCGCGACATCGTG
TCCCGCCTCCCCGTCAAGGACGCCGCCCGCACGGCCGCGCTCGCCTCCCGCTGGCGCCAGCTCTGGCGCTCCACGCCGCT
CGTCATGTACGACGCCCACCTCCTCCCAGCCGGCGACCCCGCGCGCGTCGCCGCCGTCGCCCGCATCCTCGCCGACCACC
CGGGCCCCTTCCGCACCGTCAGCATCACCTGCTGCAATTTCGCGTCGCACGAGCGTGAGCTCGCCGAGTGGCCGCGCCTC
CTCGCCGCCAAGGGCGTCCAGGACCTCGTCCTCGTCAACAAGCCCGCCGACGACGAACGCC---------TCCCCGACGT
CCCCGCCGACATCCTCCGCTGCGCCTCGCTCCGGCGCCTCTTCCTGGGATTCTGGACGTTCCCGGACACCGGCGTCAGCC
CACCCGGTGGAGG---------CGCAGACGGATTTCCACACCTCCGGGAGCTCAGCTT----------------------
--------------------GCTCGCCTCCAGCCCCGTTCTCGACACCCTCGCGCTCGTCCTCAGCCCAACCTGCGAGCG
CGTCCACCTCCGCAGCCAAAGCCTCAAGTGCGTGCTCCTCTGGGAGTGCTTCGTGAAGGAGGTCCTCGTCATGGACTCCC
CGCTCCTGGAGCGGCTCATTATGTGGAAAACCATTGATGGTGAAGACGACCCGGTGGCTGTGAGGGTCAGCATTGCTGAC
GCGCCGAAGCTGCGGGTGCTGGGTTACTTGGAGCCGAGAGTTCACCAGCTGCAGATTGGTGAGAATGTCATCAAGGTACT
ACCTTTCAATGCATCTCACTTTCAGTAATGGCATTCCATATTCCAATCTGTATCCACATTTTGAAATA---CTAGAAGGA
GCATGGCCTCTTCATT-------------------------------------------ATGCGATGCACATAGCAAAAC
ATTTCTCTCGGTGTGTCAACTGATGTGTGAATCTTGTATTTGATCATTGTACCGACGTAATGAAGTATGATCTCTCTTT-
-CTTTTGGTGGATTGCATTGCAGCCTGATACAATGGTGAGCCCAAGCACCGTGTTTCCAAGCGTCAAGACATTGGCCTTG
AAGGTGAACTTTGGTGTCTTTGAGGAGGTCAAGATGCTGGCCTGTGTCCTCAGATGCTTTCCCGAAGTTGACAGGCTGCA
CATCGAGGTGACTTCTTTGTACCCTCCTGTACTGCACATTCCTTCAGTCAGCCGTTCGGCATTCATATCATAGATTATCT
GTCACCG-----AGGTGATTAAACTACTGTCCACTTTTACCA-----TTTTGCAGTCTGTCACGGCCAATGAACCCACTG
AATTGCACCATGCTGAGTTCTGGCAAGAGGTCCATCCTATCGAATGTGTGAAGTCACACGTCAAGAAGGTGGTTATCCAT
GAATTCCGCGGAAAACAAAGCGAAAATGAATTCCTCGAGTTTGTTAGCAGCAGTGCAGAGAAGCTGCGGTCTTTGCTTGT
TGTGATTACCCAAGAAATGTTTGCGTCGGCATGGGATTTCTCAATTTCATTGCCAAATGAGGTGAATGAGGTGATTGTCA
AAGCAGGGGCTCTAACGCGTGGAGCATGGGCCTGCGAGGACTGTCAACTGGTGGTGGCGGGTCCTAAAGTGTTGGATGGT
TGGAACTTCCGCAGAGCGTCTGATCCCTGTGTTAAGGACCCTTTCCGCTGATGCACTTGAAGAAGCAGAGCACTCCTTCA
GGTACCATGAGCAGCTGCAAGTGTTCAAGTTAGCTGAAACTGATGTTTAATTTGACATGTTATGCACTGTGTGTGATCAA
CATTGATCTGTCTTTGATGCTGATAGAAGTAAAAGACATGCAGTTAGTTACATCTTGAGACTTTATATTGCTTTTACTAT
CCTAGTATCATTTTTCTTTGTAGCGCTCCTTTTTCTGTTTCATCCAGCACTAGCTAGGCAGCATTCCATGGCTTGCGGAT
ATCATATATGTGCCGACCACCTCTGCCAATTCAACCCAGAGTATACAATACTCTAGCCAGTGTGATGAATTAGCCCCTGG
ATCATGCTT-----------------------------------------------------------------------
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--------------------------------------------------------------------------GGTTTG
ATGTGCTGATGATGCTAGTGATGAGCAATAGCAGCATATATTCGCCTCAGAAAAGAATCTGCAGCAGTACATAACACGTG
CCTTGACCTTGAGCTTGAGGGCCATATTCAGAAGAAGAAAACAAG-GTTGAGGAGATGCCTTTGACGATCATGTTTTCAC
TCAATAAATTACACACATCAGTAGTGTTCAAGT-----------------------------------------------
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----------------------------------------------------------------------TTGTAATTCT
ACCGATGTTGTAAATAATTCAGTCAAATAGTTTTGCCTCAATGATTGCTTCATGTCAACTCAGTGTGCAGCCACGCCTTG
TAAGCATCCTAATCCTCACCAGTATCTATGTATGTGCCTGTCACCATCGTCTGACCCTTATCCCAGAAATTTTGCTGCAT
TTTCCAACCAGTGGATATGCATGCTATTTAGCTTTGCACATATCCATCACTCTCCTGCACCCTCAGCCCTCATTGCACAT
CCATAAAACCCACCTAGAGACAAACCCAGAAGAAGGGCAGGGAATATTACATCCATGGCTGGGCTGCAGAGGTCTTCACT
GACATTCAGGAGGTCAGGATCATCAGGCATGGTCTGGGGCGAGAGGCTCATGTCGGATGAACATAGCCAGTGGACCTCAG
GGGAACCAGAGTTCAGGGAGCTACGGCACTCCCGCAGCGTTGGGTCCGTCGGGGCGCAGCACAGGCGCAACGATGGCACC
GAGCGAGGCAGCCAGGCGTTCCGGACACGGCGCGTAGCCCTGGCCATGGATCCACCATCGCCCAAGGTTCCTGGCTGCAT
CTTCTGTGGGATTTTCAGGAAGACAGCACC
>chr3A_1
TGTGTCGAACAATTTTCTAAATGACATGAAGATTTTTCCAAAG-AATATGCCAAACACTTTTTGTAACTACATT--AAGA
TTTA-TAATTGCATAAACATTTTTAAAATGTATTGGACACTTTTCAAATTACATGAACTTTCTTGAATGATTGCACCACC
CTTTTAAATACATGATTTTA--TCTTTCAAACACTTCTTAATTGCATAATTACTTTTCTAATTGCTTCTTTTTAATGCCT
TGA-TTTTTTCAACTACATACAATTTTTAAAATGGTCCGGACCCTTTCTCTAATTACATGAATGTATTTTCAAAGATGTT
TCAAACATCTTTTTCATCCATATGAATAATTTTATAATTTATTAAGTAATTTTTAAAATACAT-GAACAATTTGGAATTA
CATGATTTCT----TAAATGGTTGGAACACTTTTTTGAATGGCATGAACATTTTAAAAAAACTTGTTGATCATTATTTTA
ATTACATGAGTGTTTTTATAATTGCATAAAGAATGAACCAAATATTAATTTAAGTACATTAACTTG--TTTTAAAAAATG
TAGCAAACACTTTTTTAATTCAATCAGTTTTTAATAATTACTTAAACATTTTGAAATTCATCAAACAGTTCTAAAGTTAC
AAAAC-TTTTTCAAATAGTTTGAACACTTTTTAAATTACATGAA-----TTAATGTTTCAAACTTTTTTTGCAATAATGT
TTCAAAAA-CCTTTTTAATTACATGAATATTTTTGTAATTGCATAAACAC---TTTGTACATTAAATTATTTCCATTAAA
TGATCTGAATATTG-----------TTTTA-AAATTACATGAAACCCAGCATGCTCGGCAAGAACATTCTTTTTGTAAAA
TGACGGCAAGAACATTTCATCTTCTTTTGCTTTCTTTTTTTGAGGGGGTCTTCTGCTTTTTTTTAGATGAGCAAGAACAC
TCCATCTCGGTGGACCGGCCACGAATGCAGCTTCATGGGCCGCTGGGCAACCAGCTTTCCGAGATTTGGTAGGCCCAAGG
TTTCTTACTCCTCCACCAGCCACCTCCACACCGGAG-------CTCCCCCTCCATTCCGGCCAAAACCCTCGCCTCCGGT
CGCCGCCATGGCCGCGAGCGTCGAGCAAGTCCTTGGGTGGTTCCCCGGCATCGAAGCCATCACCAGAATCAGGGTCGCCT
CCCTCTCCGCCGTCCCGGGC---TACGCCGGCGAGGACCGCATCAGCGCCCTCCAAGACCACCTCCTCCGCGACATCGTG
TCCCGCCTCCCCGTCAAGGACGCCGCCCGCACGGCCGCGCTAGCCTCCCGCTGGCGCCACCTCTGGCGCTCCACGCCGCT
CGTCATGTACGACGCCCACCTCCTCCCGGCCGGCGACCCCGCGCGCGTCGCCGCCGTCGCCCGCATCCTCGCCGACCACC
CGGGCCCCTTCCGCACCATCAGCATCACCTGCTGCAATTTCGCGTCGCACGAGCGCGAGCTCGCCGAGTGGCCGCGCCTC
CTCGCCGCCAAGGGCGTCCAGGACCTCGTCCTCGTCAACAAGCCCGCCGACGACGAACGCC---------TCCCCGTCGT
CCCCGCCGACATCCTCCGCTGCGCCTCGCTCCGGCGCCTCTTCATGGGGTTCTGGACGTTCCCGGACACCGGCGTCAGCC
CACCCGGTGGAGG---------CGCAGACGGATTTCCACACCTCCGGGAACTCACCTTGTTCGGCACCGACGACATGCTC
GGCGGCGACCTCGACCGCTTGCTCGCTTCCAGCCCCGTTCTCGACACCCTCGCGCTCGTCCTCAGCCCAACCTGCGAGCG
CGTCCACCTCCGCAGCCAAAGCCTCAAGTGCGTGCTCCTCTGGGAGTACTTCCTGAAGGAGGTCCTCGTCATGGACGCCC
CGCTCCTGGAGCGGCTCATTCTGTGGAAAACCATTGATGGTGAGGACGAACCGGTGGCTGTGAGGGTCAGCATTGCTGAC
GCGCCCAAGCTGCGGGTGCTGGGTTACTTGGAGCCGAGAATTCACCAGCTGCAGATTGGCGAGAATGTCATCAAGGTACT
ACCTTTCAATGCATCTCACTTTCAGTAATGGCATTCCATATTCCAATCTGTATCCACATTTTAAGATA---ATAGAAGGA
GCATGGCCTCTTCATT-------------------------------------------ATGCG----------------
---------------------------TGAATCTTGTATGTGATCATTGTACCAACGGAATGAAGTATGATCTCTCTTT-
-CTCTTGGTGCATTGCATTGCAGCCTGATACAATGGTGAGCCCAAGCACCGTGTTTCCAAGCGTCAAGACATTGGCCTTG
AAGGTGAACTTTGGTGTCTTTGAGGAGGTCAAGATGCTGGCCAGCGTCCTCAGATGCTTTCCTGAAGTTGACAGGCTGCA
CATCGAGGTGACTTCTTCGTATCCTCCTGCACTGCACATTCCTTCAGTCAGCCGTTCAGCATTCATATAACAGATTATCT
ATCACTG-----AGGTGATTAAACTACTGTCCATTTTTACCA-----TTTTGCAGTCTGTCACGGCCGATGAACCCACTG
GAATGCACCATGCCGAGTTCTGGCAAGAGGTCCATCCTATCGAATGTGTGAAGTCACATGTCAAGAAGGTGGTTATCCAT
GAATTCCGCGGAAAACAAGGCGAAAACGAATTCCTCAAGTTTGTTAGCAGCAGTGCAGAGAAGCTGCGGTCTTTGCTTGT
TGTGATTACCCAAGAAATGTTTGCGTCGGCATGGGATTTCTCAATTTCATTGCCAAATGAGGTGAATGAGGTGATTGTCA
AAGCAGGGGCTCTGACGCGTGGAGCATGGGCCTGCGAGGACTGTCAACTGGTGGTGGCGGGTCCTAAAGTGGTGGATGGT
TGGAACTTCCGCAGAGCGTTTGATCCCTGTGTTAAGGACCCTTTCCGCTGATGCACTTGAAGAAGCAGAGCACTCCTTCA
GGTACCATGAACAGCTGCAAGTGTTCAAGTTAGCTGAAACTGATGTTTAATTTGACATGTTATGCACTGTGTGTTATCAA
CATTGATCTGCCTTTGATGCTGATAGAAGTAAAAGACATGCAGTTAGTTACATCTTGAGAATTTATATTGCTTTTACTAT
CCTAGTATCATTTTTCTTTGTAGTGCTCCTTTTTCTGTTTCATCCAGCACTGGCTAGGCAGCATTCCATGGCTTGCAGAT
ATCATATATGTGCCGATCACCTCTGCCAATTCAACCCAGAGTATACAATGCTCTAGACAGGTTGATGAATTAGCCCCTGG
ATCATGGTTAGGTCCACTGTGCTGCTGGCTGAGTTTTAGTTTTCTTGGTTGCTCCATAGGCTTGTAATACATGCCTTGAC
TATTTTCTCTAGTGTTTG--------------------------------------------------------------
-----------------------------------------------------------GCAAGCAAAACTATCATGGAT
--GTTTGTTTAAGCTTATTCTGTGTGATCAGGAGGACTTGATCGGGGCTTGTTAGGGTAGGTACGAATC-AATTGGTTTG
ATGTGCTGATGATGCTAGCGATGAGCAGTAGCAGCATATATTCGCCTCAGAAAAGAAGTTGCAGCAGTACATAACACTTG
TCTAGACCTTGACCTTGAGGACCATTTTCTGAAGAAGAAAAAACAAGTTGGGGAGATGCCTGTGACGGTCATATTTTCAC
TCAATAAATTACACACATCAGTACTGTCCAAATTTTTGTTGAACAATCACCGGGGGGTGGGGGGGAGGCCTGCGTTACAT
CAGAGAGTACAATGAGAGGAGAGGAATAGGTGCCAAGACATGGCGGCGTCCCTACTAACAGGGTCTTTGAACCTAAAGAT
CGAAAGCATGAAATCAGAGATTACATTCTGTAAGGTATCTGCAGCTGAGCGAGTCGCAGTAGTGTTCTAGTTTAAATTCT
ACCGATGTTGTAAATAGTTCAGTCAAATATTTTTGCCTCAATGATTGCTTCATGCCAACTCAGTGTGCAGCCACGCCTTC
CAAGCATCCTAATCCTCACCAGTATCTGTGTATGTGCCTGTCACCATCGTCTGACCCTTATCCCAACAA-TTTGCTGCAT
TTTCCAACCTGTGGATATGCATGCCATTTAGCCTGTGACATATCTATCACTTTCCTGCCCCCTTAGCCCTCATTGCACAT
CCATAAAACCCACCTAGATACAAACCCAGAAGAAGGGCAGGGAATATTACATCCATGGCTGGGCTGCAGAGGTCTTCACG
GACATTCAGGAGGTCAGGATCATCAGGCATGGTCTGGGGCGAGAGGCTCATGTCGGATGAGCATAGCCAGTGGACCTCGG
GGGAACCAGAGTTCAGGGAGCTACGGCACTCCCGCAGCGTTGGGTCCGTCGGGGCGCAGCGCAGGCGCAACGATGGCACC
GAGCGTGGCGGCCAGGCGTTCCGGACACGGCGTGTAGCCCCGGCCATGGATCCAGCGTCGCCCAAGGTTCCTGGCTGCAT
CTTCTGTGGGATTTTCAGGAAGACAGCACC
>chr3B_12
-----------GTTTTTTAAATGACATGAAGATTCTTCCAAAAAAATGTGCCGAACACTTTTTGTAATTACACT--AATA
TTTTTTAATTGCATAAACATTATAAAAATGCATCCGACGCCTTTTAAATTACATGAACATCCTTAAATGATTCAACCAAC
TTTTTAATTATGTGATTTTTTTTCTCTCAAACATTTCTTAATCGCATAATTACTTTTCTAATCACCTATTTTTAACAAAT
TGATTTTTTTCAATTACATATAATTTTTAGAATGCTCCAAACACTTTCT--AGTTGCATGAATA-TTTTTCAAAGATGTG
TCGAACATCTTTTTCATTAATATGAATATTTTTATAATTTC-TAAGTAATTTTTAAAATACATTGAATAGTTTGAAATTA
CAAGATTCTTTTTCGAAATGGTCGGGACACTTTTTGAATGAC--------------------------------ATTTTA
ATTATATGAGTATCTTTATAATTTCATACATT-TGAATCAAATATTAATTGAACTACATTAATATAGTTTTTAAAAAATG
TTGCTAACACTTTTTAATTCAATGAATAATTTTATTAGTACATAAGCATATTAAAATTCATCAAACATGTTTTAAATTAC
AAGGAATTTTTCAAATGGTTCGAACACTTTTGAATCTCATGAACCTTTTTTCACGTTTCAAACTGTTTTTGAAA-AATGT
TTCAAAAACCCTTTTTAATTTCATGAATATTTTTCTAATTGTATA-------TTTTGCATGTAACGATTTTTAAATTACA
TGAATGTTTTAAAAAATGATCTGACTTTTTTAAATTACATGAAACACAGCATGCTCGGCAAGAACATTC-----------
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>chr3B_848
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-----------------------------------------------------------------------------CAT
TCCATCTCGGTGGACCGGCAACGCATGCAGCTACATGGGCCGGTGGGTAACCAGCTTTCCGAGATTTGGTAGGCCCAAGG
TTTCTTACTCCTCCACCAGCGGAGCCAGCCAGCCACCACACCCCTCCCACTCCATTCCGGCCAAAACCCTCGCCTCCGGT
CGCCGCCATGGCCGCGAGCGTCAAGCAAGTCCTTGGGTGGTTCCCCGGCATCGACGCCATCGCCAGGATTAGGGATGCCT
CCCTCTCCGCTGTCCCGGGC---TACGCCGGCGAGGACCGCATCAGCGCCCTCCAAGACCACCTCCTCCGCGACATCGTG
TCCCGCCTCCCCGTCAAGGACGCCGCCCGCACGGCCGCGCTCGCCTCCCGCTGGCGCCACCTCTGGCGCTCCACGCCGCT
CGTCATGTACGACGCCCACCTCCTCCCAGCCGGCGACCCCGCGCGCGTCGCCGCCGTCGCCCGCATCCTCGCCGACCACC
CGGGCCCCTTCCGCACCGTCAGCATCACCTGCTGCAATTTCGCGTCGCACGAGCGTGAGCTCGCCGAGTGGCCGCGCCTC
CTCGCCGCCAAGGGCGTCCAAGACCTCGTCCTCGTCAACAAGCCCGCCGACGACGAACGCC---------TCCCCGTCGT
CCCCGCCGACATCCTCCGCTGCGCCTCACTCCGGCGCCTCTTCCTGGGATTCTGGAGGTTCCCGGACAACGGCTTCAGCC
CACCCGGTGGAGG---------CGCAGACGGATTTCCACACCTCCGGGAGCTCAGCTTGTTCGGCACCGACGACATGCTC
GGCGGCGACCTCGACCGCTTGCTCGCTTCCAGCCCCGTTCTGGACACCCTCGCGCTCGTCCTCAGCCCAACCTGCGAGCG
CGTCCACCTCCGCAGCCAAAGCCTCAAGTGCGTGCTCCTCTGGGAGTGCTTCATGAAGGAGGTCCTCGTCATGGACTCCC
CGCTCCTGGAGCGGCTCATTCTGTGGAAAACCATTGATGGTGAAGACGACCCGGTGGCTGTGAGGGTCAGCATTGCTGAC
GCGCCGAAGCTGCGGGTGCTGGGTTACTTGGAGCCGAGAGTTCACCAGCTGCAGATTGGCGAGAATGTCATCAAGGTACT
ACCTTTCAATGCATCTCACTTTCAGTAATGGCATTCCATATTCCAATCTGTATCCACATTTTAAGATACTACTAGAAGGA
GCATGCCCTCTTCATTACGCGATGCACATAGCAAAACATTTCTCTCGGCGTGTCAAGTGATGCG----------------
---------------------------TGAATCTTGTATGTGATCATTGTATCAACGGAATGAAGTATGATCTCTCTTTC
TCTCTTGGTGCATTGCGTTGCAGCCTGATACAATGGTGAGCCCAAGCACCGTGTTTCCAAGCGTCAAGACATTGGCCTTG
AAGGTGAACTTTGGTGTCTTTGAGGAGGTCAAGATGCTGGCCAGCGTCCTCAGATGCTTTCCCGAAGTTGACAGGCTGCA
CATCGAGGTGACTTCTTCATACCCTCCTGCACTGCACATTCCTTCAGTCAGCTGTTCGGCATTCATATCATAGATTATCT
GTCACCG-----AGGTGATTAAACTACTGTCCACTTTTACCA-----TTTTGCAGTCTGTCATGGCCGATGAACCCACTG
GAACACACTATACTGAGTTCTGGCAAGAGATCCGTCCTATCGAATGTGTGAAGTCGCACGTCAAGAAGGTGGTTATCCAT
GAATTCCGCGGAAAACAAAGCGAAAACGAATTCCTCGAGTTTGTTAGCAGTAGTGCAGAGAAGCTGCGGTCTTTGCTTGT
TGTGATTACCCGAGAAATGTTTGCTTCGGCATGGGATTTCTCAATTTCATTGCCAAATGAGGTGAATGAGGTGATTGTCA
AAGCAGGGGCTCTGACGCGTGGAGCATGGGCCTGCGAGGACTGTCAACTGGTGGTGGCGGGTCCTAAAGTGGTGGATGGT
TGGAGCTTCCGCAGAGCGTCTGATCCCTCTGTAAAGGACCCTTTCCGCTGATGCACTTGAAGAAGCAGAGCACTCCTTCA
GGTACCATGAGCAGCTGCAAGTGTTCATGTTAGCTGAAACTGATGTTTGATTTGACATGTTATGCACTGTGTGTGATCAA
CATTGATCTGTCTTTGATGCTGATAGAAGTAAAAGACATGCAGTTAGTTACATCTTGAGACTTTATATTGCTTTTACCAT
CCTAGTATCATTTTTCTTTGTAGTGCTCCTTTTTCTGTTTCATCCAGCACTAGCTAGGCAGCATTCCATGGCTTGCAGAT
ATCATATACGTGCCGACCACCTCTGCCAATTCAACCCAGAGTATACAATGCTCTAGTCAGGTTGATGAATTAGCCCCTGG
ATCATGCTTAGGTCTGCTGGGCTGCTGGCTGAGTTTTAGTTTTCTTGGTTGCTCCATGGGCTTGTAATACATGCCTTGAC
TATTTTCTCTAGTGTTTGGCAAGCAAAACTATCATGGATATGTCTGTTCCAGCATATCCTCTGTGATCGGGAGGACTTGA
TCAGGGCTGGTTAGGGTAGGTACAAATCAAATTGGTTTGATGTGCTGATGATGCTAGTGGCAAGCAAAACTATCATGGAT
ATGTTTGTTCCAGCTTATCCTGTGTGATCGGGAGGACTTGATCAGGGCTGGTTAGGGTAGGTACAAATCAAATTGGTTTG
ATGTGCTGATGATGCCAGTGATGAGCAATAGCAGCATATATTCGCCTTAGAAAAGAATCTGCAGCAGTACATAACACGTG
CCTTGACCTTGAGCTTGAGGGCCATATTCAGAAGTAG--AAAACAAGTTGAGGAGATGCCTGTGACGATCATGTTTTCAC
TCAAGAAATTACACACATCAGTAGTGTTCAAGT-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TTGAAATTCT
ACCGATGTTTTAAATAATTCAGTCAATTATTTTTGCCTCAATGATTGCTTCATGCCAACTCAGTGTACGGCCACGTCTTG
TAAGCATCCTAATCCTCACCAGTATCTATATATGTGCCTGTCACCATCGTCTGACCCTTATCCAGC-AATTTTGCTGCAT
TTTCCAACCAGTGGATATGCATGCTATTTAGCTTTGCACATATCCATCACTCTCCTGCACCCTCAGCCCTCATTGCACAT
CCATAAAACCCACCTAGAGACAAACCCAGAAGAAGGGCAGGGAAGATTACATCCATGGCTGGGCTGCAGAGGTCTTCACT
GACATTCAGGAGGTCAGGATCATCAGGCATGGTCTGGGGCGAGAGGCTCATGTCGGATGAACATAGCCAGTGGACCTCAG
GGGAACCAGAGTTCAGGGAGCTACGGCACTCCCGCAGCGTTGGGTCTGTCGGGGCGCAGCGCAGGCGCAACGATGGCACC
GAGCGAGGCAGCCAGGCGTTCCGGACACGGCGCGTAGCCCCGGCCATGGATCCACCGTCGCCCAAGGTTCCTGGCTGCAT
CTTCTGTGGGATTTTCAGGAAGACAGCACC
>chr3D_1009
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-------------------------------------------------------------------------------T
CGCCGCCATGGCCGTGGTCGTCGTGGATGTCCTGCGCTGGTTCCCCGGAGGCGAGGCCATCTTCAGGGCCAATGAAGCCT
CGCTCTCCGCCGCCACCGGCCACTACGACGGCGAGGACCGCATCAGCGCCCTCCACGACGACCTCCTCCGGGACATCGTG
TCCCGCCTCCCCGCCAAGGACGCCGCCCGCACCGCCGCGCTCGCCTCCCGCTGGCGCCATCTCTGGCGCTCCACGCCGCT
CGTCTTCCACGACCTCCACCTCCTTCCGTCCAGCGACCCCTGGCACATCGCCGCCGTCGACCGCGTCCTCGCCGGCCACC
CGGGCCCCTTCTCCACCGTCAGCATCTGCTACTGCAACTTCGGGTGCCACGACCGCGAGCTCGCCGAGTGGCCGCGCCTC
CTCGCCGCCAAGGGTGTCCGGGACCTCGTCCTCGTCAACATGCACGCCGACATCGAACGCGTCCCCGCCATCCCCGATTT
CCCCGCCGACGTCCTCCGATGCGCCTCGCTCCGCCGCCTCTTCCTGGGGTTCTGGAAATTCCCCATCACCGGCATCGTCC
CACCCGCCGGCGTCGGCAGCGCCGCTGACGGGTTCCCACACCTCCAGGAGCTCAGCTTGTTCG-----------------
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>chr3D_2085
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----------------------------------------------------------------GTATGATTTCT-TTC-
-CTTTTGGTGCATCGCATTGCAGCCTGACACGAAGGTGAGCCCAAGCACCATGGTTCCGAGTGTCAAGATTCTGGCCTTG
AAGGTGAACTTTGGTGTCTTTGAGGAGGTCAGCATGCTGGCCAGCTTCCTCAGATGCTTCCCCAACGTCGAAACGCTGCA
CATCGAGGTGACAACAATTTG-----------------TTCATTCAGTCTCAA-TTTGGCATTCATATCGCCGTCAATTA
TATTTGGCTGTAAGGTGATTGAACTACTGTTGACTGCTATATATGACTTTTGCAGTCGGTCATAACCGATGAACCCACTG
GAAGGCACCATGCCAGGTTCTGGCGAGAGCTCCGTCCTATCAAATGCCTGAAGTCGCATGTCAAGAAGATGATGATCCAT
GAGTTCCGTGGGGAGCAAAGCGAAATCAACTTCCTGAAGTTCGTCGCCGGGAGTGCAGAGAAGCTGGGGACTTTGCTTCT
GGCGATTACTGAAGAAATGTTTGCTTCGGC--------------------------------------------------
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------------------------------
>SNPs
------SS-S-----------------------------S---------S---S---------S-S-S-SSSSSSS-S-S
---S---S----S-------------------S-----------------------------------------------
-------------S-----------------------------------------------------------S------
-S---------------S----------------------------------------------S---------------
-------------------------S-S--------------SS-SSS-S-------------SS---------------
------------------------------S-------------------------------------------------
----------S-------------------S----------------------S---------S-S--------------
--S----------------------S------------------------------------------------------
-----------------------------S------S--S-----S----------------------------------
------SS------S----------------------S----S-------SS--------S-----S-------------
-------------SSSSSSSSSS-S-------------------------------------------------------
-----------------------S----S----SSSSSSS----------------------------------------
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-----------------------------S--------------------------------------------------
-----------------------------------------------------------S--------------------
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--------------------------S-----------------------------------------------------
----------------------------------------------------S---------------------------
--------------------S-----------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------S-S---------------
----------------------------------------------------------------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-------------S---S----------------------
----------S---------------------------------------------------------------------
------------------------------------------S-S-----------------------------------
-----------------------------S--------------------------------------------------
-------------------------------------------------------------------S------------
S-S-----------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
-------------S---------------------------------------------------------S--------
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-----------------------S----------------------------------------------------S---
-------------------------------------------------S------S---SS------------------
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-----------------------------------------S-SS----------------S------------------
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-------------------------------------------------------------------------S------
-----------------------------S------------------------S-------------------------
-----------------------------------------------------------------SS-------------
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------------------------------------------------------------S-------------------
----------------------------------------S---------------S-----------------------
------------------------------
>forward_54
----------------------------------TCTTCCGAAAAATGTCCCGG--------------------------
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>reverse_2248
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-------TCGGTGTGTCAACTGATGTGT----------------------------------------------------
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>forward_2060
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----------------------------------------TTCACCAGCTGCAGATTGGT--------------------
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>reverse_4135
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------------------------------------------------------TCAACTCAGTGTGCAGCCAC------
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------------------------------
