>input_sequence_40779
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-------------------------------------------------------------------GCCTCGCGTCTTT
TCCGC-CCGCCTCCACCCAGGGAAAAAATAATTCCGGGGGCGACGGCCGTCGGAAACCGGTAGAATTCGTCCGGGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGATTTCGTTTCGTTTTGTTCTGTTTGTTTGGATTTGG------ATGGAGGCGGCGGC
CGAGTGCGCGGGCGGCGGCGGT------GCCCTAAGGGAGGTCAAGAAGGAGGCCGGCGCCGGCGACGTGTTCCTCGTCG
ACGACCTCCTCGACCTGCCCTGCGACGACGAC---GAGGAGGACGACGCGGCGG------GGTTCGCCGACGGGGCCGCG
GACTGTAGCGCCGGCGAGGCCGGCGGCGGCGC---CGGGAACGCGTCGGCCGACTCGTCCACGGTCACCGCCGTCGACAG
CTGCAGCAACTCCCTCTCCGGCGGCCTCGCCGACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAATTATTAATTCTT
CTCCTCTTACCCTCCCATGTCC---ATTAATTCACGCCTTATTCCTTCGTTGGCGAACAA-----ATTTATCAATTTCTG
GCGA----ACGAATTACTCGGAATTTCCATGGCTAGCTGGAACGGTCAATGCGTTCGTCTCC----CCCCATTAACACTC
GCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CCACCCCACCCCACCCCACCCCATGAATGAAGGCAGCTTTTGGAGTGACGTCTCCCGCAAA
TAGTAACCGATGAAACCCGCGGCCGGAAATAGCAACATCCTAAATAGCAAC-----------------------------
------ATCAATTTATTATCATTTCCGAGTTAATTGCGCGGCGCCCGTCTCGTT-CCATTCCTGAAAATTGTGTGCTGTG
TGC--CTGTGGATTTGCAGTACGACCAGTTGGCGGAGCTGGAATGGCTGTCCAACTACATGGGCGACGACAACTTCCCCA
CCGAGGACCTCCGCAAGCTGCAGCTCATCTCCGGCATCCCCTCGGCCTCGTCCCAGACGGCGCCGCCGCGCGCGCCCGCC
GC---GCCGGTGCAGCCTTGTGCCGGTGGTGG---CGCCGGTACGGCCTTGTGGCGCTCGGACGCGCACGCCGGGCAGGT
GTCCGTGCCGGGCAAGGCGCGCAGCAAGCGGTCCCGCGTCGCGCCCTGCAACTGGTCCTCCCGCCTGCTCGTGCTCCCGC
CGGCGCCGGCCTCGCCGCCCTCCCCGGCGTCCGCCGTCATCTCGCCGTCCGAGTCCGGGACGGCGTTCCCGCTCTTCCCG
AACAAGAAGCCCGCCAAGTCGTCCAAGAAGAAGGAGGCGCCGGCCGCGCCCGCCATGACCGCCGCGGAGGCCGCGGCCGC
GGAGGGGCGGCGGTGCCTGCACTGCGAAACCGACAAGACGCCGCAGTGGAGGACGGGGCCGCTGGGGCCCAAGACGCTGT
GCAACGCGTGCGGGGTGCGGTACAAGTCCGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGCCG
TCCAAGCACTCCAACTCGCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGACACACCGCCCCAGCAGCTGCTGCACCA
TTCCCAGCACCAGCC------------------------------------------GCCGCCGCCGCAGCAGCTGGGGC
CGGGCCTGGGGTTCCAGGTGCCGGGCCCGCTGCTGTTCGACGGGCCG---------CGCCTGGGCGGCGGCGCGGACGAG
TTCCTCATCCGCAACCGCATAGGGCCCGACCACCGGCAGCTCATCTAGCCTAGCTTAGCTAGCCAGCGCCGCCCGGCTCG
CCTAGGAGGAGGATCGTTTCGTTAGCCCCAGCAGCAATAATTCAGCAAGAAGAAGAGCCAGCCAGCCCAGCCCAGCTAAA
ACTTTTTT--CCTAGGAGTTGTTGTTTCTCCGGATTTTAATTTACCTTTTTCCAGAGACCTGTATGCTTGCTTGCTTGCT
ACACTCTCCGTGTTTCTCAGTCAGCTCAGCTCTCGAGTTCCTTAGAAACTAATCCTAGGGTGTAGTGCA---GTTTGTT-
--------------------------------------------------------------------------------
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-----------------------------
>chr1D_1_TraesCS1D01G343000
GATGGGGGAAGATTGGCGATGACATGTGGCGGCGAGCTTGAACGGGGCTCTAGACGAATACACCAAGTGACGCGTGAAGA
ACCATATGATTAGGAGTGCGGCGATGCTTTGATTTGTCCGGCGGTGGAAGGGAGGGAGCACCATTTGAGGAGGCAGCACG
ACATGAGATGCTAAGACTGAAGATAGGGGGGTGGGGGCGGCGGAATTGACGATGTGGAGCACATTGACACGAGTGTGAGA
TAGATGGAGAAGGCGAGGGGGGAGGGGGGGGGGATGGCGGCGACTACAAGAGGGGGCGACCCACGAGGAAGCATGAGCTG
GTAACACTCTATCTCATGTAATGCACGCTACATAGCCGAGTGAGGTACATAGTCGAAC--GGTACACGCATATGTACTCC
AACTATTCTGTAGTGTTGCGAGCATCGTGTAATGCTACCTCCCCTTGATCGTGCCCC-GATCGCGGCGGTTTTTGTAGAA
TGATTTTGTACAAAAACCAACACAGTGTAAATCCTCAA-TAAAAACCCCTAATGTGGATCTTTGAATTAAAGAAGCGATT
CAATGCTTGCTAGCAAATTTGCCTTTTGCCATGAAGCAAATTAC------AATCAAAACGCTCATAAAAAACCA------
---ATTCTAACTCACCAAAAATGATCCAATCAACCCGATGTTGCCGTACAT---------GAAGGCGACGAGCACATGAT
G-----CTGCACTGCATGGTGGCGCTACTGCTGTCATGCAGATGTCGTCTTCCCCGGGACCAT------AAATCGGGGAG
CTGTTTCCTTTTCC-------------TCTCCCTCACCGCCGTGTAAAACCCCGATTTAACAGGCTTTTAAGGGTGGCCT
CCACC---GCCAGGGTCAGGCCCAGCCAGCAGGCCATT----------------CCAGAGAAGAGCC-------------
--------------AGTGGCTCTGGCTTTATTTACTCCTAAAGAATCGTTCAGCCGA-----GCTTGACCCCTCCCCCTC
CCCCTCCCATCTCTCTCCTCCACTCCGCTCCCCCTCCC----CGATTAAACCCTACTCTCTCTCTCCGCCTCGCGTCTTT
TCCGC-CCGCCTCCACCCAGGGAAAAAATAATTCCGGGGGCGACGGCCGTCGGAAACCGGTAGAATTCGTCCGGGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGGATTTCGTTTCGTTTTGTTCTGTTTGTTTGGATTTGG------ATGGAGGCGGCGGC
CGAGTGCGCGGGCGGCGGCGGT------GCCCTAAGGGAGGTCAAGAAGGAGGCCGGCGCCGGCGACGTGTTCCTCGTCG
ACGACCTCCTCGACCTGCCCTGCGACGACGAC---GAGGAGGACGACGCGGCGG------GGTTCGCCGACGGGGCCGCG
GACTGTAGCGCCGGCGAGGCCGGCGGCGGCGC---CGGGAACGCGTCGGCCGACTCGTCCACGGTCACCGCCGTCGACAG
CTGCAGCAACTCCCTCTCCGGCGGCCTCGCCGACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAATTATTAATTCTT
CTCCTCTTACCCTCCCATGTCC---ATTAATTCACGCCTTATTCCTTCGTTGGCGAACAA-----ATTTATCAATTTCTG
GCGA----ACGAATTACTCGGAATTTCCATGGCTAGCTGGAACGGTCAATGCGTTCGTCTCC----CCCCATTAACACTC
GCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CCACCCCACCCCACCCCACCCCATGAATGAAGGCAGCTTTTGGAGTGACGTCTCCCGCAAA
TAGTAACCGATGAAACCCGCGGCCGGAAATAGCAACATCCTAAATAGCAAC-----------------------------
------ATCAATTTATTATCATTTCCGAGTTAATTGCGCGGCGCCCGTCTCGTT-CCATTCCTGAAAATTGTGTGCTGTG
TGC--CTGTGGATTTGCAGTACGACCAGTTGGCGGAGCTGGAATGGCTGTCCAACTACATGGGCGACGACAACTTCCCCA
CCGAGGACCTCCGCAAGCTGCAGCTCATCTCCGGCATCCCCTCGGCCTCGTCCCAGACGGCGCCGCCGCGCGCGCCCGCC
GC---GCCGGTGCAGCCTTGTGCCGGTGGTGG---CGCCGGTACGGCCTTGTGGCGCTCGGACGCGCACGCCGGGCAGGT
GTCCGTGCCGGGCAAGGCGCGCAGCAAGCGGTCCCGCGTCGCGCCCTGCAACTGGTCCTCCCGCCTGCTCGTGCTCCCGC
CGGCGCCGGCCTCGCCGCCCTCCCCGGCGTCCGCCGTCATCTCGCCGTCCGAGTCCGGGACGGCGTTCCCGCTCTTCCCG
AACAAGAAGCCCGCCAAGTCGTCCAAGAAGAAGGAGGCGCCGGCCGCGCCCGCCATGACCGCCGCGGAGGCCGCGGCCGC
GGAGGGGCGGCGGTGCCTGCACTGCGAAACCGACAAGACGCCGCAGTGGAGGACGGGGCCGCTGGGGCCCAAGACGCTGT
GCAACGCGTGCGGGGTGCGGTACAAGTCCGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGCCG
TCCAAGCACTCCAACTCGCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGACACACCGCCCCAGCAGCTGCTGCACCA
TTCCCAGCACCAGCC------------------------------------------GCCGCCGCCGCAGCAGCTGGGGC
CGGGCCTGGGGTTCCAGGTGCCGGGCCCGCTGCTGTTCGACGGGCCG---------CGCCTGGGCGGCGGCGCGGACGAG
TTCCTCATCCGCAACCGCATAGGGCCCGACCACCGGCAGCTCATCTAGCCTAGCTTAGCTAGCCAGCGCCGCCCGGCTCG
CCTAGGAGGAGGATCGTTTCGTTAGCCCCAGCAGCAATAATTCAGCAAGAAGAAGAGCCAGCCAGCCCAGCCCAGCTAAA
ACTTTTTT--CCTAGGAGTTGTTGTTTCTCCGGATTTTAATTTACCTTTTTCCAGAGACCTGTATGCTTGCTTGCTTGCT
ACACTCTCCGTGTTTCTCAGTCAGCTCAGCTCTCGAGTTCCTTAGAAACTAATCCTAGGGTGTAGTGCA---GTTTGTTT
TCCTTCTCTTCTTTTTTCATAGCCTTTTTCTTTTTTGCTTTTCCATAGAGTTTCTTCTTCATTTTCTTGTAATGCAGTCA
GTGCAGG-----GTTCATAGCCTAGATTCTAGAACAAGAGGAAACAACAGCAGCAGCAAACAGCAACGTGCAGCAGTGTT
TTTCTTTGAAAGCAATTCTGCAAAAGTAAC----TAGTGAGATTGAGCAAAGGTTGCTA----GTAGCTCGAGGCTCCAG
GCTCGCATGTGATTTCCAATCTTGTCTGTGTTTGGGCGAGCAGGATGATGATGCCTCTGCCCTGCCCCTGTGGTGTTGAA
TCCATCCATCCA------TCGATCGATCAAACAAAACAAATGGTATGATAAGGGGGAGGGCACGCACGCACGCTGGCTGG
CTGGCGCGCACAAAGTGACACGACTAGGGTGTGTCCAACCGAACCCGAGGCCCGGGCCGAGCATGGCATAGGAGGAGAGA
GTGGAGGGGAGCGAAAGGCGCACGTGACGGTGCGAATCTCGCACGCGGCCGCCCGCCGTAAATTGTTCCTCGG---AGCA
GATGCTTAACGAATTTCTTTTTTCTTTTACAGCGTCGGCATCATCATCGTCA------ACAGCCTC---ACTGGCCCTGT
GTGCCGAGG----CAATTGAAAGCCGATACGTCAGCGGCGCCTAGCTCTAGAGTAAATATCTTTTCAGTGTCAGCTAAGC
TAGCAGCGTTCTCAGTGA---------------GTGGGCCGGGCGGGCTGCGTGGTGGC------TGCGAGAGATCGGAT
CCAACCACTTCGCCGTAGTATGTAAATTGTTTTTGGTGCGGCCCTG-TTGGATGGATTCGTTCTCCGGTGAGTGGCCGAC
TGCCGCTCTTGGTCGGCAGCGGCGTGGCGCCTCGTTCGTT----CGTTCGTTCATCCGGGCCACCTTTTTTCTTGGATGG
TCGCTGCGTGCGT--------ACGCACGCTTGCACGGAGCTGACCGCCGAAAGC-TTCGTTTCACGCCTTGTACGGTTCG
CGGCGCGAGGTAATGGCTGTGGCCGTATG
>chr1B_1
GATGG-GGAAGACCGACGATGGCGTGTGACGGCGAGCTCGATCAGGGCCGTAGACGAGTATACTAAGTGA-GCGTAAAGA
ACCAGATGACTAGGAGCGCGATGATGCTTCGATTTGTCCGACGGTGGAAGGGAGGG-GCACCATTTGAGGAGG-AGCACA
ACATGAAATACTAAGAGTGGATACAGATGGGA-----CGGCGAAAACGACGTTGTGGAGCACAATGGCGCGAGTAAGAGA
TAGATGGAGAGGGCGAGGGGGGAAGGGAGT-GGATGGCGGCGACTATAAGAGGGGGCGACCCACGTGGAAGCATGACCAG
GTAACACTCTATTTCATGCAATGCACGCTACATAGCCGAGTGAGGTACATAGTCGAATGGGGTACACGCATGTGTACTTC
GACTATTATGACCTGTTGCGAGCATCATATAATGCTACCTCCCCTTCATGGTGCCCC-AATCACGGTGGTTTTTGCAGAG
TGATTTTGTACAAGAATCAACACAGGGTAAATCATCAA-TAAAAACCTCAAATGTGGATCTTTGAATTAAAGAAGTGATT
CAATGCTTGCTAGCAAATTTGCCTTTTGCCATGAAGCAAATTAC------AATCAAAACGCTCATAAAAAACCC------
---ATTCAAACTCACCAAAAATGACCCAATCAGCCCGATGTTGCCATAGAT---------GAAGGCGACGAGCACATGGT
GCTGCACTGCACTGCATGGTGGCGCTACTGCTGTCATGCAAATGTCGTCTTCCCCGCGACCAT------AAATCGGGGAG
CTGTTTCCTTTT---------------TCTCTCTCACCGCGGTG--AAACCCCGATTTAACAGGCTTTTAAGGGTGGCCT
CCACCACCGCCAGCGCCAGGCCCAGCCAGCAGGCCAGG------------------------------------------
----------GAAGAGTGGCTCTGGCTTTATTTACTCCTAAAGAATCGTTCAGCCGAGCTCCGCTTGACCCCTCCCCCCT
CCCCTCCCCTCTCTCTCCTCCACTCCGCTCCCT---CC----CGATTAAACCCTACTCTCTCTCTCCGCCT-GCGTCTTT
TCCGC-CCGCCTCCACCCAGCGAAAAAATAATTCCGGGGGCGACGGCCGTCGGGAGTCGATAGAATTCGTCCCG------
------GGAGGAGGAGGAGGAGGGATTTC---TCGTTTTGTTCTGTTTGTTTGGATTTGG------ATGGAGGCGGCGGC
CGAGTGCGCGGGCGGCGGCGGCGGCGGCGCCCTAAGGGAGGTCAAGAAGGAGGCCGGCGCCGGCGACGTGTTCCTCGTCG
ACGACCTCCTCGACCTGCCCTGCGACGACGACGAGGAGGAGGACGACGCGGCGGCGGCGGGGTTCGCCGACGGCGCCGCG
GACTGTAGCGCCGGCGAGGCCGGGGGCGGCGG---CGGCAACGCGTCGGCCGACTCGTCCACGGTCACCGCCGTCGACAG
CTGCAGCAACTCCCTCTCCGGCGGCCTCGCCGACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAATTATTAATTCCT
CTCTTTTTACCCTCCCGTGTCCATTATTAATTCACGCGTTATTCCTTCGT---CGCACGA-----ATTTATCAAATTTTG
GCGG----ACGAATTATTC----------------------ACGGTCAATGCGTTCGTCTCC----CCCCATTAACACTC
GCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CCG---------------CCCCATGAATGAAGGCAGCTTTTGGAGTGACGTCTCCCGTAAA
TAGTAACCGATGAACCCCGCGGCCGGAAATAGCAACCTCCTAAATGCTCTCCGTTTCTCCGGACACGGAAACGAAACGAA
TACTCGATCACTTTATTATCATTTCCGAGCTAATTCCGCGGCGCTCGTTTGGTT-CCATTGCTGAAAATCGTGTGCTGTG
TGT--CTGTGGATTTGCAGTACGACCAGTTGGCGGAGCTGGAATGGCTGTCCAACTACATGGGCGACGACAACTTCCCCA
CCGAGGACCTCCGCAAGCTGCAGCTCATCTCCGGCATCCCCTCGGCGTCGTCCCAGACGGCC---CCGCGCGCGCCCGCC
GC---GCCGGTGCAGCCTTGTGGCGGTGGTGG---CGTCGGTACGGCCTTGTGGCGCTCGGAGGCGCACGCCGGGCAGGT
GTCCGTGCCGGGCAAGGCGCGCAGCAAGCGGTCCCGCGTCGCGCCCTGCAACTGGTCCTCCCGCCTGCTCGTGCTCCCGC
CGGCGCCGGCCTCGCCGCCCTCCCCGGCGTCCGCCGTCATCTCGCCGTCCGAGTCCGGGACGGCGTTCCCGCTCTTCCCG
AACAAGAAGCCCGCCAAGTCGTCCAAGAAG---GAGGGGCCGGCCGCCCCCGCCATGACCGCCGCCGAGGCCGCGGCCGC
GGAGGGGCGGCGGTGCCTGCACTGCGAGACCGACAAGACCCCGCAGTGGAGGACGGGGCCGCTGGGGCCCAAGACGCTGT
GCAACGCGTGCGGGGTGCGGTACAAGTCCGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTCGTGCCG
TCCAAGCATTCCAACTCGCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGACACCCCGCAGCAGCAGCTCCTGCACCA
TTCTCAGCACAAGCCGCCGCAGCAGCAGCTCCTGCACCATTCTCAGCACCAGCCGCCGCAGCAGCAGCACCAGCTGGGGC
CGGGCCTGGGGTTCCAGGTGCCGAGCCCGCTGCTGTTCGACGGGCCG---------CACCTGGGCGGCGGCGCGGACGAG
TTCCTCATCCGCAACCGCATAGGCCCCGACCACCGGCAGCTCATCTAGCCTAGCTTAGCTAGCCAGCGCCGCCCAGCTCG
CCTAGGAGGAGGATCGTTCCGTTAGCCCCAGCAGCAATAATTCAGCAAGAAGAA----CAGCCAGCCCAGCCCAGCTAAA
ACTTTTTT--CCTAGGAGTTGTTGTTTCTCCGGATTTTAATTTACCTTTTTCCAGAGACCTGTATGCTTGCTTGCTTGCT
ACACTCTCCGTGTTTCTCAG-----TCAGCTCTCGAGTTCCTTAGAAACTAATCCTAGGGTGCATTTTGTTCGTTTTCCT
TCCTTCTCTTCTTTTTTCATAGACTTTTTTC--TTTGCTTTTCCATAGATTTTTTCCTTCATTTTCTTGTAATGCAGTCA
GTGCAGG-----GTTCATAGCCTAGATTCTAGAACAAGAGGAAACAACAACAGCAGCAAACAGCAACGAGCAGCAGTGTT
TTTCTTTGAAAGCAATTCTGCAAAAGTAAC----CAGTGAAATTGAGCAAA----GCTA----GTAGCTCGAGGCTCCAG
GCTCGCATGTGATTTCCAATCTTGTCTGTGTTTGGGCGAGCAGGATGATGATGCCTCTGCCC-----CTGTGGTGTTGAA
TCCAT----CCA------TCGATCGATCAAACAAAACAAATGGTATGATAAGGGGCACGCAC-------------GCTGG
CTGGCGCGCACAAAGTGACACGACTAGGGTGTGTCCAACCGAACCCCAGACCCAGGCCGGGCATGGCATAGGAGC----A
GTGGAGGGGAGCGAAAGGCGCACGTGACGGTGCGAATCTCGCACGCGGCCGCCCGCCGTAAATTGTTCCTCGGTGCAGCA
GATGCTTAACGAATTTCTTTTT-CTTTTACAGCGTCGGCATCATCATCGTCA------ACAGTCTCACAACTGGCCCTGT
GTGCCCACCGGGCCAATTGAAAGCCGATACGTCAGCGGCTCCTAGCTCTAGAGTAAATATCTTTTCAGTGTCAGCTAAGC
TAGCAGCGTTCTCAGTGA---------------GTGGGCCGGGCGGGCCGCGTGGTGACTGCGAGTGCGAGAGATCGGAT
CCAACCACTTCGGC---GCAAGTAAATTGTTTTTGGTGCGGCCCTG-TTGGATGGATTCGTTCTCCGGTGACTGGCCGAC
TGCCGCTCTTGGTCGGCAGCGGCGTGGCGCCTCGTTCGTT----CGTTCG----TCCGGGCCACCTTTTTTCTTGGATGG
TCGCTGCGTGCGTGCGTGCGTACGCACGCTTGCACGGAGCTGACCGCCGAAAGCCTTCGTTTTACGCCTTGTACGGTTCG
CGGCGCGAGGTAATGGTTGTGGCCGTAT-
>chr1A_283
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ACTACAAGAGGGGGTGACCCACGAGGAAGCATGAGCTG
GTAACACTCTATCTCATGTAATGCACGCTACATAGCCAAGTGAGGTACATAGTCGAAC--GGTACACGCGTATGTACTCC
GACTATTCTGTCGTGTTGCGAGCATCATGTAACGGTACCTCCCCTTCATCGTGCCCCCGATCGCGGCGGTCTTTGCAGAA
TGATTTTATACAAAAACCAACACAGGGCAAATCCTCAATTAAAAACCCCGAATGTGGATCTTGGAATTAAAGAAGCGCTT
CAATGCTTGCTAGCAAACCTGCCATTTGCCACGAAGCAAATTGCAATCGAAATCAAAACGCTCATAATATCACCCCGAGA
CTCATTCCAACTCACCAAAAACAATCCAATCAGCCCGACGTTGCCATACACGAGCCAGCCGAGGGCGATGAGCACATGCT
GCTGC------------------GCTACTGCTGTCATGCAAATGTCGTCTTCTCCGCGGCCATAAATCGAAATCGGGGGG
CTGTTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCGCCGCCGTGAAAAACCCCGATTTAACAGGCTTTTAAGGGA-----
--------------GTCCGGCCCAGCCATGGCAGCAGGCAGGCGAGGGGCGGGGCCAGAGAAGAGTGGCAGCACTCAAAA
AAAAAGAAGAGAAGAGTGGCTCTGGCTTTATTTACTCCTAAAGAATCGTTCAGCCGAGCTTGA-----------------
CCCCTCCCCTCTCTCTCCTCCACTCCGCTCCCCCTCCCTCCGCGATTAAACCCTACTCTCTCTCTCCGCCTCGCGTCTTT
TCTTTTCCGCCCCCACCCAGAGAAAAAATAATTCCGGGGGCGACGGCCGCCGGAAACCCGTAGAATTCGTCCGGGGAG--
-------------GAGGAGGAGGGATTTCGTTTCGTTTTGGTCTGTTTGTTTGTTTGGATTTGGATATGGAGGCGGCGGC
CGAGTGCGCGGGCGGCGGCGGCGGCGGC---CTAAGGGAGGTCAAGAAGGAGGCCGGCGCCGGCGACGTGTTCCTCGTCG
ACGACCTCCTCGACCTGCCCTGCGACGACGACGAGGAGGAGGACGACGCCGCGGCGGCGGGGTTCGCCGACGGGGCCGCG
GACTGCAGCGCCGGCGAGGCCGGCGCCGTCGACGTCGGGAACGCGTCGGCCGACTCGTCCACGGTCACAGCCGTCGACAG
CTGCAGCAACTCCCTCTCCGGCGGCCTCGCCGACGGCGACTTCTCCGGCGGCCTCTGCGAGCCGGTAATCATTAATTCCT
CTCCTTTTACCCTCCCGTCTCCATTATTAATTCACGCGTTGTTCCTTCCTTCGCTGCACGGATTTATGTATCAAATTTTG
GCGAACAAACGAATTATTC----------------------ACGGTCAATGCGTTCGTCTCCCTCCCCCCATTAACACTC
CCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCCCG---------------CCCCATGAATGAAGGCAGCTTTTGGAGTGACGTCTCCCGTAAA
TAGTAACCGATGAAACCCGCGGCCGGAAATAGCAACCTCCTAAACGCTCCCCCCTTCTCCGGACACGGAAACGAATGATC
GAC-----CAATTTATTATCATTTCCGAGTTAATTCCGCGGCGCCCGTTTCGTCGCCATTGCTGAAAATCGTGTGCTGTG
TGTGTCTGTGGATTTGCAGTACGACCAGTTGGCGGAGCTGGAATGGCTGTCCAACTACATGGGCGACGACAACTTCCCCA
CCGAGGACCTCCGCAAGCTGCAGCTCATCTCCGGCATCCCCTCGGCCTCGTCCCAGACGGCC---CCGCGCGCGCCCGCC
GCCGCGCCGGTGCAGCCCTGTGGCGGTGGTGGCGCCGTCGGTACGGCCTTGTGGCGCTCGGAGGCGCACGCCGGGCAGGT
GTCCGTGCCGGGCAAGGCGCGCAGCAAGCGGTCCCGCGTCGCGCCCTGCAACTGGTCCTCCCGCCTGCTCGTGCTCCCGC
CGGCGCCGGCCTCGCCGCCCTCCCCGGCGTCGGCCGTCATCTCGCCGTCCGAGTCCGGGACGGCGTTCCCGCTCTTCCCG
AACAAGAAGCCCGCCAAGTCGTCCAAGAAGAAGGAGGCGCCGGCCGCGCCCGCCATGACCGCCGCCGAGGCCGCGGCCGC
GGAGGGGCGGCGGTGCCTGCACTGCGAGACCGACAAGACGCCGCAGTGGAGGACGGGGCCGCTGGGCCCCAAGACGCTGT
GCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTTGTGCCG
TCCAAGCACTCCAACTCGCACCGCAAGGTGGTGGAGCTGCGGCGCCAGAAGGACGCCCCGCCCCAGCAGCTGCTGCACCA
---------------------------------------------------------GCCGCAGCAGCAGCAGCTGGGGC
CGGGCCTGGGGTTCCACGTGCCGAGCCCGCTGCTGTTCGACGGGCCGGCGGCGCCGCACCTTGGCGGCGGCGCGGACGAG
TTCCTCATCCGCAACCGCATAGGGCCCGACCACCGGCAGCTCATCTAGCTTAGC-TAGCCAGCCAGCGCCGCCCAGCTCG
CCTAGGAGGAGGATCGTTCCGTTAGCCCCAGCAGCAATAATTCAGCAAGAAGAAGAGCCAGCCAGCCCAGCCCAGCTAAA
ACTTTTTTTTCCTAGGAGTTGTTGTTTCTCCGGATTTTAATTTACCTTTTTCCAGAGACCTGTATGCTTGCTTGCTTGCT
ACACTCTCCGTGTTTCTCAGTCAGCTCAGCTCTCGAGTTCCTTAGAAACTAATCCTAGGGTGCAGTTCCTTTGTTTTCCT
TCCTTCTCTCTCT-------------------------TTTTTCATAGAGTTTTTTCTTCATTTTCTTGTAATGCAGTCA
GTGCAGGCAGTGGTTCATAGCCTAGATTCTAGAACAAGAGGAAACAACAGCAGCAGCAAACAGCAACGAGCAGCAGTGTT
TTTCTTTGAAAGCAATTCTGCAAAAAGTAACTAGTAGTGAGATTGAGCAAAGGTCGCTTGCTGGTAGCTCGAGGCTCCAG
GCTGGCATGTGATTTCCAATCATGTCTGTGTTTGGGCGAGCAGGATGATGATGCCTCTGCCC-----CTGCGGTGTTGAA
TCCATGGATGGATCGACCTCGATGGATCAAACAAAACGAATGGTATGATAAGGAC----GCACGCACGCACGCAC----G
CTGGCGCGCACAAAGTGACACGACTGGGGTGTGTCCAACCGTACCTCAGACCCAGGCCGGGCATGGCATAGGAGGGGAGA
GTGGAGGCGAGCGAAAGGCGCACGTGACGGTGCGAATCTCGCACGCGGCCGCCCGCCGTAAATTGTTCCTCGG---AGCA
GATGCTTAACGAATTTCTTTTTTCTTTTACAGCGTCGGCATCATCATCATCATCGTCAACAGTCTCACGACTGGCCCTGT
GTGTCGACCGGGCCAATTGAAAGCCGATACGTCAGCGGCTCCTAGCTCTAGAGTAAATATCTTTTCGGTGTCAGCTAAGC
TAGCAGCGTTCTCAGTGACTGTGAGTGGGCCGTGTGGGCCGGGCGGGCCGCGTGGTGACTGCGAG------AGATCGGAT
CCAACCACTTCGCCGTGGCATGTAAATTGTTTTTGGGGCGGCCCTGTTTGGATGGATTCGCTCTCCGGTGAGTGGCCGAC
TGCCGCTCTTGGTCGGCAGCGGCGTGGCGCCTCGTTCGTTCGTCCGTTCG----TCCGGACCAGCTTTTTTCTTGGATGG
TCGCTGCG---------------------TTGCACGGAGCTGACCGCCGAAAGCCTTCGTTTCACGCCTTGTAAGGTTCG
CGGCGCGAGGTAATGGCTGTGGCCGTATG
>SNPs
-----S------SS-S-----S-S----S---------S--S-S----SS-------S--S--S------S----S----
----S----S------S---SS-------S----------S---------------S----------------S-----S
------S--S------S--S-S-S--SS---SSSSSS-----S--SS----S-----------S--S-S-----SS----
----------S------------S---S-SS-------------------------------------------------
--------------------------------------------------------------------------------
S----------S--------------S-------------------S----------------------------S----
-------------------------S-----------------------S------------------------------
-------------------------------------------------------------------------S------
-------S------------------------S------------S--------------------------------S-
----------------------------------------S---------------S-----------------------
-------------S-----------------S------------S-----------------------------------
-------------S----------------------SS---------------------------SS-------------
------------------------------------------------------------------------------SS
--------S-----------------------------------------------------------------------
--------------------S---------------------------------------------------------SS
SSSSSS--------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
------------------------------------------------------------------------------S-
-----S----------S--------------------S-------------S---S--S---------------S--S--
----------------S--SSSSSSSSSSSSSSSSSSSSSS---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------SSSSSSSSSSSSSSSS---------------------------------------S---
------------------------------------S--------SSSSS------------------------------
-----------------------------------S------------S-----------S--------S----------
--S-----------------------------------------------------------------------------
-------------------------------------------------------------SSSS---------------
----------------------S--------------S------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
---S------S---------------------------------------------------S--S--------------
-----------------------S---------------------------------S----------------------
--------------------------------------------------------------------------S-----
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S---S-S-------SSS-
----------------------S------SSSS--------------------S--------------------------
--------------------------------------------------------------------S-----------
------------------------------------------------------S-------------------------
--------------------------------------------------------------SSSSS-------------
-----SS------------------------------------------------S-S---------------SS-----
----------------------------------------------S--S---S-----S---------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-------SS------------------------------S----------------------------------------
------------------------------------------------S--------S----------------------
----------------S-S-------------------------------------------------------------
--------------------------------------------------SSSS--------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_85
-----------------------------------------------------------------AGTGACGCGTGAAGA
ACCAT---------------------------------------------------------------------------
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>reverse_1951
--------------------------------------------------------------------------------
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------------------------------CACCCCACCCCATGAATGAA------------------------------
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>forward_1199
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-----------------------------------------------------------GTAGAATTCGTCCGGGGAGG-
--------------------------------------------------------------------------------
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>reverse_3139
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCGTTAGCCCCAGCAGCAAT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>forward_1943
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CCCATTAACACTCGCCCCAC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
>reverse_3665
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CCCCTGTGGTGTTGAA
TCCA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------
