>input_sequence_40690
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----------------------------------------------------------GTATAAATAGTTCCCAATAAAC
GGGTTGGGAACATGATAATCATG---TACATTCGTGTACTTCA------TGGTACCAAGTAGCTTGCTCATCGTACTCAT
CTCGTTAGTTCAACGAGTTGCTGATAGGAACGTCTACAGGA-----------------CCATAATTTTTATAAGCTCTAA
CGCACGGAGGCGAGTTGTTTTGAATTCAACGTATCCAAAAGTCCCAACCAGCAGTTTTGCCGTCATGCCGGAATCCAGAA
AACAGCAGCTCGTTTAGCGCCGCACCAACTCACAAGTGGCACCGATTTCTTTCGTATTTTCTTCGAGCGAGCCACCAGCT
CGGCCACGAACCATTTATAGGCTGCCCCAGTTGCTACTGGAGCTCCACTCACAAACGCATCGAGAAACCGACGAGACAAG
CAGCCGCAGCGTACCAACAGAG-AGCACTCATCACAGGA-------TGCATCTAGCAATGCGACCAGCGGGGAAGACGAC
GGCTGCCACGGCGCACGCCCGATCGGCCAGCCTGCCACGCGAACACCCGCACCCCGTGCTGGCGCACCTGGACGACAGCA
TCCGCGCGCTCAGGTCATGGTCGGCCAGAGCAGCTGCCGGTCAGTCCTCCGGCATCGCCCTCGTCAATGCCGTCCTGGCA
GCGCTCGGTGAGCTCCTGGCGCTGCCGCAGGCTGTGGCGGCACTCCACACAGCCACCGCCGCCTGCGACCAAATTCTCGA
AAGGTTCCTTGTGCTTGTTGACGCCTACGGCACATTCCTGTCGACGCTCGTCACGCTCAAGCAGTGCGTGGCGGAGCAGC
AGGTCGGCACTAGGCGCAGGGACGGCATGATGGTCACTGCATCGCTTCGTGCACACAGGCGGACAGAGAAGGAGCTGTGC
CGCCTTGTCACCACGATGCGACATGCCGCCAGGGGCACGTTGAGGCCATTGGATACCACGAACAATGAGGTGATCAACAT
TGTGGCAGAGGTTGGTGCGGCCACTGTGGAAGCATCGGAGGCCATCTTCATGGAGTGTGCAGCAATGTCACCGGACATGC
AAGTGCCTTCAAACAAGTGGCTGGCCAGGCTGAGCATCAGGCCGTCCGCCAAGAAGGCAGCACCAGAGACAGCGATGGTG
GCGTTGGAGAGGCTAGAGAAGCTAGAGGAATCCATTGGTGGGCTGGAGACCGGGAGCGAGAAGGTTTTCAGAAGACTGCT
GCACTCTAGAGTTTCACTTCTGAACATCCTTACTCCCTTCTAACCCTG------------------TATAGACAGTCAGG
ATGTTAGAAGAGGAAAACAGGAAACATGTAGTGGCAGTGACGACAGTAGAAGAAACGTAGTATAGGATAACAGTGGCATA
CTGTATGTAGTTTCAGTTTTGCAGACTTCTAAAGTAGTA-CTATCTGTTTTTGCACAGAATCGCCTCCCTTCATGTCACA
TTAACCTTGAGCCACCAAAAAGGTATGTTGCTACAAACTGGAGAATAATGTTACAGGCTGGTTGAATTCTTCCTGCTAGC
TTAAATGCAGATAGCACCAGGACAACCCGA--TCACAC------------------------------------------
---------------------------------------------------------------------CCCGACATTAA
AGCTCAGCAGTAATAGCCTGGCCAAAATCCAGATTTATAAGTTGAGATAATGAACTGGTAGACTGACAACTGAA-AACAC
AGCTAGTTGTGCAAAACTACAACTTTTGTCTCTTCAAGAATAGCTGCATTTTGTCCGTAGCCCTCTCCAAAGCATCAGGG
ATACCATGATTTGCACCCCAGTTGAGCTCCTTCAGCTCAGAACTGTCAGTATCAGTAACACTGACAAACTCATTGGTTTC
TGTAAACTGGCTTCAGTTCAGACCATCCCCAGAGAAACCAGGTAGTACCTCCTCTTTACGGAGGGGGTATTTGACAATTC
ATATAAGAGTCAAGGACCTTCATATCTAAAGCTTTTCTTC-GAGTTACAGCATAAACCTGTTTGATGCCAACTTGACATG
TTAAA---------------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G178500
TATCTGGTGGGCTAGGAGGAGGGCAATACATGATGACGAATTTCAGAGCCCTGTGTCCACAATGTGCTTTGTAAATCCCT
ACTTGGAGGACCTTGAGATCGTCTCTGTTAGGAAACCTGCAGCTAATATACGCTTGCCTCAACAGCGTTCGAGGGGATGG
ATTTCTCCAG----------GGCAAAGATTAATGTTGATGGAGCGGTTTCGCGGAATGGAAGATCAGATGCAGCGACGGC
TATTTGTAGGGACATGGACGGTAATTATTTGGGAGCTTCAGCAGTCACTTTTGACGGCCTGGTTGACGCTGCAGGTCTCA
AAGCCCAAGCTTGTAGCGAAGCCCTGGCTCTTGCCAGAGATCTCAACATCTCACGTGTGATAATCGCGTCTGATTGTCTG
CAAGTAGTCTCGGATATTAATGGACGTGTGTTTTCTTTCTTATGCCACTGTCTTAGAGGAGATTAAAGAGTCTATGAGAG
GTTTTGTTAGAGCTAGTTATAGATTTGAGTGTAGGGAAGCAAATTCTGAAGCTCATGCCATTGCTGAGGCTGCTTCATCG
CTCCCTGCAGGTCGCCACTTGTGGCTAGGGATCCAACCGGACATTACTTGTATTCCTTTTTCGGTGCATCATGAAT-AAA
ATCCCTAGTTCACCTAAAAAAAAACATATTGGTTCGCATTACGCAAGTGGTTTGCTTAGCTTACCGGGTCTTGCTGTTGG
TGGTTGAGCATTTTGTATTGTTCCCAACCTACACTCGTTTCACAAGCCTGGTTTTGACCGCACTTCTCGTGAAAGCAGAG
GCCCCAACAAAACCGGACGCACCTCTGACTTTTGTGATCTTTCCGACCATTGGATGAAGAGTTGAAGGCCCAGACAGCCT
GCTCATAC-----AAAAACGCAGACAGCCTGGGTCGGCAAAGGGTGTTAATCCAGCGATTCGATGCCACAGGATTGACAG
GACACG-ATTTGTCTTCGTATTCCCCAGTTCATACAAAGAGGTTATGAAATTT-GAACGTATAAATAGTTCCCAATAAAC
GGGTTGGGAACATGATAATCATG---TACATTCGTGTACTTCA------TGGTACCAAGTAGCTTGCTCATCGTACTCAT
CTCGTTAGTTCAACGAGTTGCTGATAGGAACGTCTACAGGA-----------------CCATAATTTTTATAAGCTCTAA
CGCACGGAGGCGAGTTGTTTTGAATTCAACGTATCCAAAAGTCCCAACCAGCAGTTTTGCCGTCATGCCGGAATCCAGAA
AACAGCAGCTCGTTTAGCGCCGCACCAACTCACAAGTGGCACCGATTTCTTTCGTATTTTCTTCGAGCGAGCCACCAGCT
CGGCCACGAACCATTTATAGGCTGCCCCAGTTGCTACTGGAGCTCCACTCACAAACGCATCGAGAAACCGACGAGACAAG
CAGCCGCAGCGTACCAACAGAG-AGCACTCATCACAGGA-------TGCATCTAGCAATGCGACCAGCGGGGAAGACGAC
GGCTGCCACGGCGCACGCCCGATCGGCCAGCCTGCCACGCGAACACCCGCACCCCGTGCTGGCGCACCTGGACGACAGCA
TCCGCGCGCTCAGGTCATGGTCGGCCAGAGCAGCTGCCGGTCAGTCCTCCGGCATCGCCCTCGTCAATGCCGTCCTGGCA
GCGCTCGGTGAGCTCCTGGCGCTGCCGCAGGCTGTGGCGGCACTCCACACAGCCACCGCCGCCTGCGACCAAATTCTCGA
AAGGTTCCTTGTGCTTGTTGACGCCTACGGCACATTCCTGTCGACGCTCGTCACGCTCAAGCAGTGCGTGGCGGAGCAGC
AGGTCGGCACTAGGCGCAGGGACGGCATGATGGTCACTGCATCGCTTCGTGCACACAGGCGGACAGAGAAGGAGCTGTGC
CGCCTTGTCACCACGATGCGACATGCCGCCAGGGGCACGTTGAGGCCATTGGATACCACGAACAATGAGGTGATCAACAT
TGTGGCAGAGGTTGGTGCGGCCACTGTGGAAGCATCGGAGGCCATCTTCATGGAGTGTGCAGCAATGTCACCGGACATGC
AAGTGCCTTCAAACAAGTGGCTGGCCAGGCTGAGCATCAGGCCGTCCGCCAAGAAGGCAGCACCAGAGACAGCGATGGTG
GCGTTGGAGAGGCTAGAGAAGCTAGAGGAATCCATTGGTGGGCTGGAGACCGGGAGCGAGAAGGTTTTCAGAAGACTGCT
GCACTCTAGAGTTTCACTTCTGAACATCCTTACTCCCTTCTAACCCTG------------------TATAGACAGTCAGG
ATGTTAGAAGAGGAAAACAGGAAACATGTAGTGGCAGTGACGACAGTAGAAGAAACGTAGTATAGGATAACAGTGGCATA
CTGTATGTAGTTTCAGTTTTGCAGACTTCTAAAGTAGTA-CTATCTGTTTTTGCACAGAATCGCCTCCCTTCATGTCACA
TTAACCTTGAGCCACCAAAAAGGTATGTTGCTACAAACTGGAGAATAATGTTACAGGCTGGTTGAATTCTTCCTGCTAGC
TTAAATGCAGATAGCACCAGGACAACCCGA--TCACAC------------------------------------------
---------------------------------------------------------------------CCCGACATTAA
AGCTCAGCAGTAATAGCCTGGCCAAAATCCAGATTTATAAGTTGAGATAATGAACTGGTAGACTGACAACTGAA-AACAC
AGCTAGTTGTGCAAAACTACAACTTTTGTCTCTTCAAGAATAGCTGCATTTTGTCCGTAGCCCTCTCCAAAGCATCAGGG
ATACCATGATTTGCACCCCAGTTGAGCTCCTTCAGCTCAGAACTGTCAGTATCAGTAACACTGACAAACTCATTGGTTTC
TGTAAACTGGCTTCAGTTCAGACCATCCCCAGAGAAACCAGGTAGTACCTCCTCTTTACGGAGGGGGTATTTGACAATTC
ATATAAGAGTCAAGGACCTTCATATCTAAAGCTTTTCTTC-GAGTTACAGCATAAACCTGTTTGATGCCAACTTGACATG
TTAAATTAAATATAAACTTTGACATGAAGAACAAATCATCAAGCTAGAAGGATAAGGGAAAGAATATGCAAGGACTTTTT
CGTGTATTAAGCACTTGTCAGTAACAAGAAGGCGACCGGAACAGATTGAAGAGCATGAAAATCCGGGAGCTA--------
--GATGCACCAGGCTTTCTTAGTACAATAGTGAATATTCTATCGGAGCACTTGATTGTACTCCGTATATCATACGTGCCA
ACTATGATATTCTACAATGGTCCATGGATAAGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CAGAATACACAAGACGTCCAACTACATGCAGTATACAATTGC
ATAAGCACATACACCATATAATGCAAATCAGGTTCCATCTCAAATATTTACAGGTGCCTATCAACTTAATCAGGACTTTC
AAATTTCAGGATAAACTAGGAAAAACATAAAGTGGATTGCAGAAAAGCCCAAATAAGCATCATACCAATAACAATTCAAA
GCTTTCCTTACCTGCATCTACACAATTATCCTGCAGAAAGAATAATCTGGTGGATAAACTGAGAATTAACTGTAGTTGTT
GGTCTAGGTTAGCATATTGCACAACTGAGGTCCTTCATTAGGCATGTCGCAACGACGAAACAACAATAAGCAACACCAAG
GAACTCAAACAAAACTCATCACTTAAGATGTATTACCAATCAACCAAGTGCTACTGAGGTTCAGTCTTGAGTCTTGACCT
ATCAAACTTAATTGACACAACATGAGCTTTCAAAACTTTTTCAGTCAGGATAAAGATACATTACCGATCAGCTAAGTGCT
ACTGAACTTCACTCTTGACCTACCAACATGCCTAGCTCAGGGAGATGTAATCTGAGTTTTGAGTATACTGGCTAGCATAT
GATGCCAATTGACCACCATCCCTGAAGAAACATCCATCGTCATCATC-ATATGGATCTGCACCACTAACTTATATGCGCC
GTCCAAGTTGGGCCAAACACCTGCTTAACAGGTTACGCTAAACAAGTATATCCATGAATTG
>chr5D_1
TATCTGGTGGGCAAGGAGGAGGGCAATACATGATGATGAATTTCAGAGTCCTATGTCCACAATGTGCTTTGTAAACCGCT
ACTTGGAAGACCTCGACATCGTCTCTGTTAGGAAACCTGCAGCTAATATACGTTTGCCTCAACAGCGATCAAGGGGATGG
ATTTCTCCTGGAGAGGAAGCGGCAAAGATTAATGTAGATGGAGCTGTTTCGCGGAATGGCAGAGCAGGTGCAGCGGCGGC
GATTTGCAGGGACAAGGACGGAAATTATTTGGGTGCTTCAGCAGTCACTTTTGACGACCTGGTTGACGCTGCAGGGCTCG
AAGCTCATGCATGCAGTGAAGCCCTGGCTCTTGCCAAAGATCTCAACATCTCACGCGTCATCATCGCGTCTGATTGCCTG
CAAGTCGTCTCCGATATTAATGGACGGGTGCTTTC-TTCTTATGCCCTTGTCTTAGAGGAGATAAAAGAGACTATGAGAG
ATTTTGCTAGAGTTTGTTATAGATATGAATGTAGGGAAGCAAATTCTGAAGCTCATGCCATTGCTAAGGCTGCTTCATCG
CTCCCTGCAGGTCGCCACTTGTGGCTGGGGATCCTACCGGACATTACTTGTATTTCTTCTTCGGTTCATCATGAATAAAA
ATCCCTAGTTCACCTAAAAAAAAA--------------------------------------------------------
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>chr4B_1
TATCAGGTGGGCAAGAAGGAGGGCAATACATGATGACGAATTTCAGAGTCCTTTGTCCACGATGTGCTTTGTAAACCGTT
ACTTGGAGGACCTCGAGATCGTTTATGTTAGGAAACCTGCAGTTAATATACGTTTTCCTCAACAACGATCAAAGGGATGG
ATTTCTCCAGGAGAGGAAGCGGCAAAGATTAATGTTGATGGAGCGGTTTCGCGGAATGGCAGATCAGGTGCAGCGGCAGC
GATCTGCAGGGACAAGGACGGAAATTACTTGGGTGCTTCAGTAGTCACTTTTGATGGCCTGGTTGACGCTGCAAGTCTCG
AAGCTCATGCATGCAGCGAGGCCCTGGCTCTTGCCAAAGATCTCAACATCTCACG-------------------------
--------------------------------------------------------------------------------
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-------------------------------T-GTGATCATCGCGTCTGACTGCTTGCAA--------------------
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---------------------------------------GTAGTCTCATATTAATGGACGGGTGCTTTCTTCCTGTGCCC
TTATCGTAGAGGAGATTAAAGAGTCTATGAGAGATTTTGTTAGAGCTTGTTATAGATACGAATGTAGGGAGGCAAATTCC
GAATCTCGTGCCATTGCTTAGGCTGCTTCATCGTTCCCGTCAGGACGCCGCTTGTGGCTAGGGATCCTACCGGACATTAC
TTGTATT-------------------------------------------------------------------------
------------------------------------------------------------CCTTCTTCGTTGCATCATGA
ATAAAATCCCTAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTCACCTTAAAAAAAAC---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr1D_667
--------------------------------------------------------------------------------
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-------------------------------------ATTACGCAAGTGGTTCGCTTAGCTTACGGAGTCTTGCTTTTGG
TAGTTGAGCGTATTGTATTGTTCCCAACCTAAACTCGTTCCACAATCCTGGTTTTGGCCGCACTTATCGTGAAAACAGAG
GCCCCAACAAAACCGGACGCACCTCTGACTTT-GTGATCTTTCTGACCATTGGATGAAGAGTTGAAGGCCCAGACAAGCA
GGATAACCTCTTTGTA-------------TGATCGGGG-AAGGGTGTTAATCCAGTGATTCGATGCCATACGATTGACGG
GACACGAATTTGTCTTCATACTCCCCAGTTCATACAAAGAGGTTATGAAATTTTGAACATATAAATAGTTCCCAATAAAC
GGGTCGGGAACATGATAATCATGTAATACATTCGTGTACTTCATCATCATGGTACCAAGTAGCTTGCTCATCGTATTCAT
CTCGTTAGTT-AACGAGTTGCTGATAAGTGTTAAAAAAAACGAGTTGCTGATAAGAACCCATAATTTTTATAAGCTCTAA
CGCACGGATGCGAGTTGTTTTGGATTCAACGTATCCAAAAGT-CCAACCAGCAGTTTTGCCGTCATGCCGGGATCCAGAA
AACAGCAGCTCGTTTAGCGCCGCACCAACTCACAAGTGGCACAGATTTCTTTCGTATTTTCTTCGAGCGACCCACCAGCT
CGGCCACGTACCATTTATAGGCTGCCCC-GTTGCTACTGGAGCTCCACTCACAAACGCATCGAGAAACCGACGAGACAAG
CAGCCGCAGCGTACCAGCAGAGCAGCACTCATCGCAGGA-------TGCATCTAGCAATGAGACCAGCGGGGAAGACCAC
GGCTGCCACGGCGCACGCCCGATCGGCCAGCCTGCCACACGAACACCCGCACCCCATCATGGCGCACCTGGACGACAGCA
TCCGCACGCTCAGGTCATGGTCGGCCAGAGCAACCGGCGGTCAGTCCTCCGGCATTGCCCTCGTCGATGCCGTCCTGGCA
GCGCTCGGTGAGCTCCTGGCGCTGCCGCAGGCTGTGGCAGCACTCCACACAGCCACCGCCGCCTGCGACCAAATCCTCGA
AAGGATCCTTGTGCTCGCTGACGCCTACGGCACATTCCTGTCGGCGCTCGTCACGCTCAAGCAGAGCGTGGCGGAGCAGC
AGGTCGGCACTAGGCGCGGGGACGGCATGATGGTCGCTGCATCGCTCCGTGTACACAGGCGGACAGAGAAGGAGCTGTGC
CGCCTCGTCACCATGATGCGACATGCCGCCAGAGGCACGTTGAGGCCATTGGATACCACGAACAATGAGGTGATCGGCAT
TGTGGCAGATGTAGCCGTGGCCACTGTGGAAGCATCGGAGACCATCTTCATGGAGTGTGCAGCAATGTCACCGGACATGC
AAGTGCCTTCAAACAAGTGGCTGGCCAGGCTGAGTGTCAGGCCGTCCGCCAAGAAGGCAGCACCAGAGACAGCGATGGTG
GCGTTGGAGAGGCTAGAGAAGCTAGAGGAATCCATTGGTGGGCTGGAGACCGGAAGTGAGAAGGTTTTCAGAAGACTGCT
GCAGTCTAGAGTTTCACTTCTGAACATCCTTACTCCCTTCTAACCCTGCAGCCGTGTTGCCCCCTGTATAGACAGTCAAG
A-TTTAGAAGAGGA-AACAGGAAATATGTAGTAGCAGTGATGAAAGTAGAAGAAACGTGATATAGGATAACAGTGGCGTA
CTGTATGTAGTTTCAGTTGGACAGACTTCTAG--------------GTTTTTGCACAGAATCGCCACCCTCCATGTCAAA
TTAGCCTTGAGCCAACAAAAGA-TATGTTGTTACAAACTTGAGAATAGTGTTAGAGGCTGGTTGAATTCTTCCTGTCAGC
TTAAATGCAGATATTACCAGGATAACCTGATCTCACAC------------------------------------------
---------------------------------------------------------------------CCCGACATTAA
AGCTCAGCAGTAATAGCCTGGCCAGAGTCCAAATTTATAAGTTGAGATAATGAACTGGTAGACTGACAACTGAATAACAC
AGCTAATTGTGCAAAACTACAACTTTTGTCTCTTCAAGAATAGCTGCATTTTGTCCGTAGCCCTCTCCAAAGCATCAGGA
ATACCATGATTTGCACCCCTGTTGAGCTCCTTCAGCTCAGAACTGTCAGTATCAGTAACACTGACGAACTCATTGGTTTC
TGTAAACTGGCTTCAGTTCAGACCATCCCCAGAGAAACCAGGTAGTACCCCCTCTTTACGGAGGGAGTATTTGACAATTC
ATATAAGAGTCAAGGCCCTTCATATCTAAAGCTTTTCCTCGGAGTTACAGCATAAACCTGTTTGATGACAACTTGACATG
TTAAATTAAATATAAACTTTGACATGAAGAAAAAATCATCAAGCTAGAAGGATAAGGGAAAGTACATGCAAGGACTTTTT
CGTGTATTAAGCACTTGTCAGTAACAAGAAGGCGACCGGAACAGATTGAAGAGCATGAAAATCCGGGAGCTAACAACAAT
TAGATGCACCAGGCTTCCTTAGTACAATACTGAATATTCTACCGGAGCACTTGAGT-------GTATATCATACGTGCCA
ACTATGATATTCTACAATGGTCCATGGATAAGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CAGAATACAGAAGACGTCCAACTACATGCAGTATACAATTGC
ATAAGCACATACACCATATAATGCAAATCAGGTTCCATCTCAAATATTTACAGGTGCCTATCAACTTAATCAGGACTTAC
AAATTTCAAGATAAACTAGGAAAA-CATAAAGTGGATTTCAGAAAAGCCCAAATAAGCATCATACCAATAACAATTCAAA
GCTTTCCTTATCTGCATCTACACAATTATCCTGCAGAAAGAATAATCTGGTGGATAAACTGAAAATTTACTGTAGTTGTT
GGTCTAGGTTAGCATATTGCACAACTGAGGTCCTTCATTAGGCATGTCACAGTGACGAAACAACAATAAGCAATACCAAG
GAACTGAAACAAAACTCATCACTTAAGATGTATTACCAATCAAG---GTGCTACTGAGCTTCAGTCTTGAGTCTTGACCT
ATCAAACTTAATTGACACAACATGAGCTTTCAAAACTTTTTCAATCAGGATAAAGATACATTACCGATCAGCTAAGTGCT
ACTGAACTTCACTCTTGACCTACAGACATGCCTAGCTCAGGGAGACGTAATCTGAGTTTTGAGTATACTGGCTAGCATAT
AATGCCAATTGACTACCATCCCTGAAGAAACATCCATCGTCATCATCAATACGGATCTGCACCACTAACATATTTGCCA-
-TCCAAGTTGGGCT-AACACCTGCTTAACAGGTTACGCTAAACCAGGATATCCATGAATTG
>chr1B_685
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-------------------------------------------------------TTGGCTTACGGAGTCTTGCTTTTGG
TGGTTGAGCATTTTGTATTGTTCCCAACCTAAACTCGTTTCACAAGCCTGGTTTTGGCCGCACTTCTCGTGAAAACAGAG
GCCCCAACGGAACCGGACGCACCTGACT-TTT-GTGATCATCCTGGCCATTGGATGAAGAGTTGAAGGCCCAGACAGCCT
GCTTGTCCAAAAAAAAAACGCAGACAGCCTGGTCGGGG-AAGGGTGTTAATCCAGCGATTCGATGCCCCACAATTGACGG
GACACGAATTTGTCTTCATACTCCCTAAA-CATACAAAGAGGTTATGAAATTT-GAACATATAAATAGTTCCCAATAAAC
GGGTTGGGAACATGATAATCATG---TACATTCGTGTACTTCG------TGGTACCAAGTAGCTTGCTCATCGTACTCAT
CTCGTTAGTT-AACGAGTTGCTGATAAGAACGTCTACAGGA-----------------CCATGATTTTTG-AAGCTCTAA
CGCACGGAGGCGAGTTGTTTTGAATTCAACGTATCCAAAAGTCCCAACCAGCAGTTTTGCCGTCATGCCGGAATCCAGAA
AACAGCAGCTCGTTTAGCGCCGCACCAACTCACAAGTGGCACCGA-TTCTTTCGTATTTTCTTCGAGCGACCAACCAGCT
CGGCCACGTACCATTTATAGGCTGCCCT-GTTGCTACTGGAGCTCCACTCACAAAAGCA---AGAAACCGACGAGACAAG
CAGCCGCAGCGAACCAGCAGAGCAGCACTCACCGCAAGACACAGGATGCATCTAGCAATCAGAGCAGCGGGGAAGACGAC
GGCTGCAACGGCGCACGCCCGATCGGCCAGCCTGCCACACGAACACCCGCACCCCGT----GCGCACCTGGACGACAGCA
TCCGCGCGCTCAGGTCATGGTCGGACAGAGGAGCCGCCGGTCAGTCCTCCGGCATCGCCCTCGTCGATGTCGTCCTGGCA
GCGCTCGATGAGCTCCTGGCGCTGCCGCAGGCTGTGGCAGCACTCCACACAGCCACCGCCGCTTGCGACCAAATCCTCGA
AAGGTTCCTTGTGCTTGCTGACGCCTATGGCACATTCCTGTCCACGTTCGTCATGCTCAGGCAGAGCGTGGCAGAGCAGC
AGGTCGGCACTAGGCGCGGGGACAGCATGATGGTCGCTGCATCGCTTCGTGCACACAGGCGGACAGAGAAGGAGCTGTGC
CGCCTCGTCACCACGATGCGACATGCCGCCAGGGGCACGTTGAGGCCATTGGATACCACGAACAATGAGGTGATCGGCAT
TGTGGCAGATGTAGCTGCGGCCACTGTGGAAGCATCGGAGGCCATCTTCATGGAGTGTGCAGCAATGTCACCGGACATGC
AAGTGCCTTCAAACAAGTGGCTGGCCAGGCTGAGTGTCAGGCCGTCCGGCAAGAAGGCAGCACCGGAGACAGCGATGGTG
GCGTTGGAGAGGCTAGAGAAGCTAGAGGAATCCATTGGTCGGCTGGAGACCGGAAGTGAGAAGGTTTTCAGAAGACTGCT
GCAGTCTAGAGTTTCACTTCTGAACATCCTTACTCCCTTCTAACCCTG------------------TATAGACAGTTAGG
ATTTTAGAAGAGGA-AACAGGAAACATGTAGTGGCAGTGACGAAAGTAGAAGAAACATAATATAGGATAACAGTGGCATA
CTGTATGTAGTTTCAGTTGTGCAGACTTCTAAAGTAGTACCTATCTGTTTTTGCACAGAATCGCCTCCCTTCATGTCAAA
TTAACCTTGAGCCACCAAAAAGGTACGCTGTTACAAACTGGAGAATAATGTTAGAGGCTGGTTGAATTCTTCCTGTCAGC
TTGAATGCAGATACCACCAGGATAACCCGG--TCACAC------------------------------------------
---------------------------------------------------------------------CCCGACACTAA
AGCTCAGCAGTAACAGCCTGGCCAATATCCAGATTTATAAGTTGGGATAATGAACTGGTAGACTGACAACTGAATAACAC
AGCTAATTGTGCAAAACTACAACTTTTGTCTCTTCAAGAATAGCTGCATTTTGTCCGTAGCCCTCTCCAAAGCATCAGGA
ATACCATGATTTGCACCCCTGTTGAGCTCCTTCAGCTCAGAACTGTCAGTATCAGTAACACTGACGAACTCATTGGTTTC
TGTAAACTGGCTTCAGTTCAGACCATCCCCAGAGAAACCAGGTAGTACCCCCTCTTTACGGAG----TATTTGACAATTC
ATATAAGAGTCAAGGCCCTTCATATCTAAAGCTTTTCTTCGGAGTTACAGCATAAACCTGTTTGATGACAACTTGACATG
TTAAATTAAATATAAACTTTGACATGAAGAAAAAACCATCAAGCTAGAAGGATAAGGGAAAGTATATGCAAGGACTTTTT
CGTGTATTAAGCACTTGTCAGTAACAAGAAGGCGGCCGGAACAGATTGAAGAGCATGAAAATCCGGTAGCTAACAACAAT
TAGATGCACCAGGCTTCCTTAGTACAATACTGAACACTCTTG-GGAGCACTTGAGT-------GTATATCATACGTGCCA
ACTATGATATTCTACAATGGTCCATGGATAAGCCAGAATAGTAGGGGTGCAGGGCGGTGCCCGAATCCGGCCCGCTTCCT
ATTCAAAGCTAAAAAAGTCAGTTATAGAAAAATTAAACTACGTCACATCAATTTGTACTAGCTGTGTGCTAGCTGGCTGT
TTTTGCGGGATTTTGCGGGACGCCATCCTGCACCCCTACAGAATACAGAAGACGTCCAACTACATGCAGTATACAATTGC
ATAAGCACATACACCATATAATGCAAATGAGGTTCCATCTCAAATATTTACAGGTGCCTATCAACTTAGTCAGGACTTCC
AAATTTCAGGATAAACTAGGAAAAACATAAAGTGGATTTAGGAAAAGCCCAAATAAGCATCATACCAATAACAATTCAAA
GCTTTCCTTACCTGCATCTACACAATTATCCTGCAGAAAGAATAATCTTGTGCATAAACTGAAAATTAACTGTAGTTGTT
GGTCTGGGTTAGCATGTTGCACAACTGAGGTCCTTTATTAGGCATGTCACAATGACGAAACAACAATAAGCAACACCAAG
GAACTGAAACAAAACTCGTCACTTAAGATGTATTACCAATCAACCAAGTGCTACCGAGCTTCAGTCTTGAGTCTTGACCT
ATCAAACTTAATTGACACAACATAAGCTTTCAAAACTTGTTCAGTCAGGATAAAGATACATTGCCGATCAGCTAAGTGCT
ACTGAACTTCACTCTTGACCTACCAACATGCCTAGCTCAGGGAGACATAATCTGAGTTTTGAGTATACTGGCTAGCATAT
AATGCCAATTGACTACCATCCCTGAAGAAACATCCATGGTCATCATC-ATATGGGTCTGCACCACTAACATATTTGCCA-
-TCCAAGTTGGGCCAAACACCTGCTTAACAGGTTACGCTAAACAAGGATATCCATGAATTG
>SNPs
------------S-----------------------------------S---S----------------------S-S--
-------------S--------------------------------------S--------------S--S---------
-----------------------------------------------------------S-------S-------S----
S-----S-------S------S-----------S---------------------------------------------S
----S--S--S--S----------------------S------------------S--S--S--------------S---
-----S-----S--------------S---S----S----------SS---------------S------S---------
S-----S-----S-S---------S---S------------------------------------S--------------
--------------------------S-------S-------------------S---S------S--------------
------------------------SSSSSSSSSSSSS---------------S-----------S-S--------S----
-------------------------------S------------------------S-----------------S-----
--------------------------------S-----------------------------------------------
---S--S-------------------------SSS--SS-------------------------------S-------S-
-----------------S--S-------------------------------------S---------------------
--------------------------------------------------------------------------------
----------S---------------S-----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------S-------------------S---------------------------------------------------
----------------S----------------S--------------------------S-------------------
--------------------------------------S------------------SS---------------------
----------------------------------S------------------------------S--------------
--------------------------------------S-----------------------------------S-----
-----------------S----------------------------------------------S---------------
-----------------S-----------------S--------------------------------------------
-----S---------------------------------------------------------------------SS---
---------S--S-S-----------------------------------------------------------------
----------------------------------SS--------------------------------------------
-----------------------------------------------------S--S-----------------------
---S----------------------------------------------------------------------------
--S-----------S----------------------------S---------------S--------------------
------------------S-----------------------------------------------------------S-
------------------------------S----------------------S---------------------SS---
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-------------------------------------------------------------------------S
-------------------S---------------------------------------------S--------------
-------------------------------------------------S---------------S--------------
---------------S---------------------------------------------------S------------
-------------------------------S------------------------------S-----------------
--------------------------------------------------------------------------------
----------------S------------S-----------S------------S-SSSSSSS-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
------------------------------------------------------------------------------S-
--------------------------------------S-----------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------S---S---------------------------
-----S----------------------------------------------------S---------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
S------------S-------------------------------------------------------S---S---SSS
S---------------------------------------------S--------------
>forward_716
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--------------------------------------------------------TAGCTTACCGGGTCTTGCTG----
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>reverse_1997
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------ACAT
TGTGGCAGAGGTTGGT----------------------------------------------------------------
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>forward_833
--------------------------------------------------------------------------------
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-------------CGGACGCACCTCTGACTTTT-----------------------------------------------
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-------------------------------------------------------------
>reverse_2583
--------------------------------------------------------------------------------
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----------------------CAACCCGATCACACCCCG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------
>forward_2479
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-----------------------------------------------------------ATCGCCTCCCTTCATGTCAC-
--------------------------------------------------------------------------------
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-------------------------------------------------------------
>reverse_4241
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--------------------------------------------------------------------------------
GTCCAAGTTGGGCCAAACAC-----------------------------------------
