>input_sequence_40677
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------------------------------------------------------ATGAAGCAATTACTCCTGCAGTACCT
GAAGCTGTTCCTGTTGCTAGGGCTTAGCAGAGTCACAACCGAGCACGTGCCTAAATATGATGTGCTTGCATCCCTGGGGA
CGCTCCCCCTTGACGGCCATTTCAGCTTCCACGACTTGCCTGCAGCTGCAAGGGACTTCGGTAACCTCTCCAGCTTCCCG
CCAGTCGCTGTGCTTCACCCAGGTTCAGTGGCTGACATTGCCAGAACCGTGAGGCATGTGTTCTTGATGGGTGAGCACTC
CACGCTCACAGTGGCAGCTCGTGGGCATGGGCACTCGCTATATGGGCAGTCCCAGGCTGCTGGAGGGATTGTCATCAGAA
TGGAATCCCTTCAGAGTGTCAAAATGCAGGTGCATCCTGGTGCATCACCGTATGTGGATGCCTCAGGTGGAGAACTCTGG
ATAAATGTCTTGAATAAGACGTTGAAGTATGGTTTGGCGCCGAAGTCATGGACAGACTACCTCCACCTTACGGTCGGGGG
CACGTTGTCAAATGCGGGTGTCAGCGGGCAGACATTCCGGCATGGTCCACAGATCAGCAATGTGAACGAACTGGAGATTG
TAACTGGTATGAACTGACCTATATATTTGGTTGATTTGAACAACTAGGAGAGTAAATAATGTGGCTAACTTTCTACCATG
ATTTTCAAATGCAGGAAGAGGTGATATTATCACTTGCTCACCAGAACAGAACTCTGATCTCTTCCATGCTGCTCTTGGTG
GTCTAGGTCAATTTGGCATCATTACTCGGGCCAGGATCGCTCTTGAGCCTGCTCCACAAATGGTAAATTGAAAGAACACA
TCTGTGACAACTCCATGCTAGTACATTTTAGTAAGCATATGCTCATGAGTTCATTGGATGTACAACAGGTAAGGTGGATA
AGAGTTCTCTACTTAGATTTCATGAGCTTCACCGAGGATCAGGAGATGCTTATTTCAGCAGAGAAGACCTTCGACTACAT
TGAAGGTTTCGTAAGCATAAACAGAACAGGCATCCTAAACAACTGGAGGTCATCATTCAATCCACAGGACCCAGAACGGG
CTAGCCAGTTCGAAACAGACAGAAAAGTGCTCTTCTGCCTTGAGATGACAAAGAACTTCAACCCTGAAGAAGCTGACATC
ATGGAACAGGTGAGCCAATGATTTGTTCTTGTGTTACTAAAGATGTTTGTGTATAAAGTGTTGTCAGATGGCCTGAGTGG
TTGAATTCCATATGTATATATGTTTACAGGAGATCCATGCACTACTATCTCAACTCAGATACACACCACCGTCCTTATTC
CACACAGACGTCACTTACATGGAGTTCTTGGATAGGGTGCACTCCTCTGAGATAAAGCTGAGAGCTAAGGGCTTGTGGGA
AGTCCCACACCCATGGCTTAATCTCATCATCCCAAGAAGCACTGTCCATACATTTGCAAAGCAGGTCTTTGGGAAAATCC
TCGAAGATAACAACAATGGTCCCATATTGCTCTACCCAGTGAACAAGTCCAGGTAAATTGCTTTATGTACTGAAATCAAA
AAACCCATTCAGAAACTCTTATACATCATGTCATGGTATTTTCAAGTGAATGATTCA-------------TCTTGTTTCA
TGCAGATGGGACAACCGAACATCAGTGGTCTTACCAGATGAGGAAGTTTTCTACCTGGTGGGATTCCTACCCTCGGCGAT
AGGCCCCCACAGCATCAAGCGTACACTGAACCTGAACAACCAGATAATAGAGTTCTCTAACAAAGCAAGTATTGGGGTGA
AGCAATATCTTCCAAACTACAGCACAGAACCCGAGTGGAAAGCCCACTATGGGGCTAGGTGGGACGCATTTCAACAGAGG
AAAAACACCTATGACCCCCTGGCAATCCTAGCTCCAGGACAGAGAATATTTCAAAAGACACCAGTGTCACTACCCTTGTC
CTCATGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------
>chr1A_1_TraesCS1A01G234800
GCGAGCAATACCATGTGGGCAAAGGGATTCTACAATATCAAGCTAAAGCTCCTGGCCACTAAAAAAATGGAAAAATGCCT
AGGTG-ATCCATGTCCATACGATTTTGCAACCACAAAATATCAAATTCCAGAACTCAAAATGCTGAAAAGGACATTTCTA
TCAGCATGTCTAGAAATGGCCAGACAGAAGGATTCTTACCGATATACATGTCTGCGAAAATAGATGAGCATGAAGTCAGA
AAACAGTCCC-CCAGCATCTGAAGAAACATCTGGGAATAAGCATTATCAGATATGCTCAACAAGATGCTTGTCACTCACA
AATCCGAAAGCACAGAGATAACATCTTGGCTTGTCCTGCCGAACATCAATTGAATTTGAGGGATCAAGTCGGCCTGCTCG
ATAGCAATCAGGTTTGCCACTTGAATCAATTTGCTAGTACCATCTGATGACTTGATCAGAAGTTCAATCCTGCTGAGATC
CACATCAGGTACACAAGTTAAATATCTGTGTCCATTAACTGCTT-CTGTTTCATCTTTGCCATGTCATTGTTTTCCTTCT
CCCTGGCAAGGTGCAGTCAGTGATATGTTTAGTGATAGACAGAGCATACTGAGTGAATGCATCTTTTTGCCCTTCCTCCA
TACACT-------TCCTGACAGATGTCACGGGATGCTTAAAACATAAGCCAGAAAGAACGAATACCAGACTCTAGAATGG
AACCATTCCACCACTGCAGCATAATCTTTGATCCAAATTTTCCTAGCAGCCTGTCCTCACACAGTCACACAGGTTCTAGT
ACCAAACAGTGCCCTGGACTTGTTTGACCACACCACTACCTGCACCAGCCCAGACACATACCCTTCAAGTTCTCCTTTAA
ATCCCCTGCCCTCCCTCCATCTCCACA-CCATCCCTCTGCTCTTGCAGTGAACCACTACCCTGCTACACATCTTTCATCT
TTCTCCTGAAAACATCACCACTGAACTTGTTTATTTT---CCTACAGAAGAGCCATGAAGCAATTACTCCTGCAGTACCT
GAAGCTGTTCCTGTTGCTAGGGCTTAGCAGAGTCACAACCGAGCACGTGCCTAAATATGATGTGCTTGCATCCCTGGGGA
CGCTCCCCCTTGACGGCCATTTCAGCTTCCACGACTTGCCTGCAGCTGCAAGGGACTTCGGTAACCTCTCCAGCTTCCCG
CCAGTCGCTGTGCTTCACCCAGGTTCAGTGGCTGACATTGCCAGAACCGTGAGGCATGTGTTCTTGATGGGTGAGCACTC
CACGCTCACAGTGGCAGCTCGTGGGCATGGGCACTCGCTATATGGGCAGTCCCAGGCTGCTGGAGGGATTGTCATCAGAA
TGGAATCCCTTCAGAGTGTCAAAATGCAGGTGCATCCTGGTGCATCACCGTATGTGGATGCCTCAGGTGGAGAACTCTGG
ATAAATGTCTTGAATAAGACGTTGAAGTATGGTTTGGCGCCGAAGTCATGGACAGACTACCTCCACCTTACGGTCGGGGG
CACGTTGTCAAATGCGGGTGTCAGCGGGCAGACATTCCGGCATGGTCCACAGATCAGCAATGTGAACGAACTGGAGATTG
TAACTGGTATGAACTGACCTATATATTTGGTTGATTTGAACAACTAGGAGAGTAAATAATGTGGCTAACTTTCTACCATG
ATTTTCAAATGCAGGAAGAGGTGATATTATCACTTGCTCACCAGAACAGAACTCTGATCTCTTCCATGCTGCTCTTGGTG
GTCTAGGTCAATTTGGCATCATTACTCGGGCCAGGATCGCTCTTGAGCCTGCTCCACAAATGGTAAATTGAAAGAACACA
TCTGTGACAACTCCATGCTAGTACATTTTAGTAAGCATATGCTCATGAGTTCATTGGATGTACAACAGGTAAGGTGGATA
AGAGTTCTCTACTTAGATTTCATGAGCTTCACCGAGGATCAGGAGATGCTTATTTCAGCAGAGAAGACCTTCGACTACAT
TGAAGGTTTCGTAAGCATAAACAGAACAGGCATCCTAAACAACTGGAGGTCATCATTCAATCCACAGGACCCAGAACGGG
CTAGCCAGTTCGAAACAGACAGAAAAGTGCTCTTCTGCCTTGAGATGACAAAGAACTTCAACCCTGAAGAAGCTGACATC
ATGGAACAGGTGAGCCAATGATTTGTTCTTGTGTTACTAAAGATGTTTGTGTATAAAGTGTTGTCAGATGGCCTGAGTGG
TTGAATTCCATATGTATATATGTTTACAGGAGATCCATGCACTACTATCTCAACTCAGATACACACCACCGTCCTTATTC
CACACAGACGTCACTTACATGGAGTTCTTGGATAGGGTGCACTCCTCTGAGATAAAGCTGAGAGCTAAGGGCTTGTGGGA
AGTCCCACACCCATGGCTTAATCTCATCATCCCAAGAAGCACTGTCCATACATTTGCAAAGCAGGTCTTTGGGAAAATCC
TCGAAGATAACAACAATGGTCCCATATTGCTCTACCCAGTGAACAAGTCCAGGTAAATTGCTTTATGTACTGAAATCAAA
AAACCCATTCAGAAACTCTTATACATCATGTCATGGTATTTTCAAGTGAATGATTCA-------------TCTTGTTTCA
TGCAGATGGGACAACCGAACATCAGTGGTCTTACCAGATGAGGAAGTTTTCTACCTGGTGGGATTCCTACCCTCGGCGAT
AGGCCCCCACAGCATCAAGCGTACACTGAACCTGAACAACCAGATAATAGAGTTCTCTAACAAAGCAAGTATTGGGGTGA
AGCAATATCTTCCAAACTACAGCACAGAACCCGAGTGGAAAGCCCACTATGGGGCTAGGTGGGACGCATTTCAACAGAGG
AAAAACACCTATGACCCCCTGGCAATCCTAGCTCCAGGACAGAGAATATTTCAAAAGACACCAGTGTCACTACCCTTGTC
CTCATGAGAGTTTCTACTGTAAATAATGTGGAGCAATATGTC--------TTTTTTTGGAATAGTTTGAATTGCTTACCA
CATATGTCACGTGGTTAGCAATATGTCTATGTTAGTATGGAACTATAGTCACTTT--AAAAGATAACGAACTGTAGCGTG
AAGAACACAGTGTACAGAGTGGTGACTATTAAGTAGTGGTGATGCTCAAAATACTTTTAGCAGTGAGATCAATGAAGATC
AGCAATGACATACCTTTGAGTTGTGTCTGATCCTCTTTTGAAGCAATCATTTGAGGATTATATCGGTCCATGAAACAGAT
GTTGTTCCAGCACAAAGATAAAGCCATGCAACGATGAACTGAACCACTAACCAGTGGAACTCATGCTGAATACTGTGTTA
ATTGATGACGGGTAGAAAAGGCTGGTCTCGGGTAGACCGGTGATTAACAAATAAAGGTGTCTGACA--------TGTGAA
AGAGACCTGTATAGATGCAGAAACTGAACTGAGTTCCACCCAGGAAAAAATATTATTTATTGGTGCAGGAAGCCA-----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------CAA--AAAATCTTTAAAGAAAGAATATGTTTATA--TAATCTGAATCTTGCTGAAACTC
CTCAGCAACCAGAAACTAAAGAATCAAAAGTACAGAAGGTGAATGGCCTGTGATATATACTGACATGAGCGAAATAATGC
CAATATTAGTAAGATGCATATGAAGTAAAAGTTGCATCTAACTAGAGTAGATTGAGGTATTATTAAATCATTATTATTGT
AATCACTTTCCACCATGAATATGATACTGTTTAGTTTATGATTGTCCGTTAAAAGCTTGAGGGATCGAGTCACGATCAAG
TAGTGTAAGAGTTCACTATATAATTGTGTCAAGTT------ATACACATCAGTCTTAACAAAGGGGCTGGAGCTAATAAT
TCTAAACGTCCAATTAAGTGGAAAAGGGATGGATAGGCTATAATTAAGCCAAACGTAAATCATTCACATCAGCATATACG
TCAATAACAGCCACATAACAT
>chr1D_1
GCGAGCAATGCCATGTGGGCAAAGGGATTCTACAATATCAAGCTAAAGCTCCTGACCACTAAAAAAT-GAAAAAATGCCT
AGGGCAATCCATGTCCATACGATTTTGCAACCACAAAATATCAAATTCTAGAACTCAAAATGCTGAAAAGGATATTTCTA
TCAGCATGTCTAGAAATGGCCAGACAGAAGGATTCTTACCGATATACATGTCTGCGAAAATAGATGTGCATGAAGTCAGA
AAACAGTCCCACCAGCATCTGAAAAAACATCTGGGAATAAGCCTTATCAGATATGCTCAACAAGATGCTTGTCACTCACA
AATCCAAAAGCACAGAGATAACATATTGGCTTATCCTGCCGAACATCAATTGAATTTGAGGGATCAAGTGGGCCTGCTCG
ATAGCAATCAGGTTTGCCACTTGAATCAATTTGTTAGTACCATCTGATGACTTGATCAGAAGTTTAATCCTGCTGAGATC
CACATCAGGTACACAAGTTAAATATCTGTGTCTGTTAACTGC-T-CTGTTTCATCTTTTCCATGTCATTGTTTTCTTTCT
CCCTGGCAAGGTGCAGTCAGTGATATGTTTAGTGATAGACAGAGCATACTGAGTGAATGCATCATTTTGCCCTTCCTCCA
TAAACTTCCTGAGTCCTGACAGATGTCGCAGGATGCTTAAAACATAAGCCGGAAAGAACGAATACCAGACTCTAGAATGG
AACCATTCCACAACTGCAACATAATCTTTGATCCAAATTTTCCTAGCAGCCTGTCCTCACACAGTCACACAGGTTCTAGT
ACCAAACAGTGCCCTGGACTTGTTTGACCACACCACTACCTGCACCAGCCCACATACGTACCCTTCAAGTTCTCCTTTAA
ATCCCCTGCCCTCCCTCCATCTCCACTCCCATCCCTCTGCTCTTGCAGTGAACCACTACCCCGCTATACATCTTTCATCT
TTCTCCTGAAAACATCACCACTGAACTTGTTTATTCTTGACCTACAGAAGAGCCATGAAGCAATTAGTCCTGCAGTACCT
GAAGCTGTTCCTGTTGCTAGGGCTTAGCGGAGTCACAACCGAGCACGTGCCTAAATATGATGTGCTTGCATCCCTGGGGA
CGCTCCCCCTTGACGGCCATTTCAGCTTCCACGACTTGCCTGCAGCTGCAAGGGACTTCGGCAACCTCTCCAGCTTCCCG
CCAGTCGCTGTGCTTCACCCAGGTTCAGTGGCTGACATTGCCAGAACCGTGAGGCATGTATTCTTGATGGGTGAGCACTC
CACGCTCACAGTGGCAGCTCGTGGGCATGGGCACTCGCTATATGGGCAGTCCCAGGCTGCTGGAGGGATTGTCATCAGAA
TGGAATCCCTTCAGAGTGTCAAAATGCAGGTGCATCCTGGTGCATCACCGTATGTGGATGCCTCAGGTGGAGAACTCTGG
ATAAATGTCTTGAAAAAGACGTTGAAGTATGGTTTGGCGCCGAAGTCATGGACAGACTACCTCCACCTTACGGTTGGGGG
CACGTTGTCAAATGCGGGTGTCAGCGGGCAGACATTCCGGCATGGTCCACAGATCAGCAATGTGAACGAACTGGAGATTG
TAACTGGTATGAACTGACCTATATATTAGGTTGATTTGAACAACTAGGAGAGTAAATAATGTGGCTAACTTTCTACCATG
ATTTTCAAATGCAGGAAGAGGTGATATTATCACTTGCTCACCAGAACAGAACAATGATCTCTTCCATGCTGCTCTTGGTG
GTCTAGGTCAATTTGGCATAATTACTCGGGCCAGGATCGCTCTTGAGCCTGCTCCACAAATGGTAAATCGAAAGAACTCA
TCTGTGACAACTCCATGCTAGTACATTTTAGTAAGCATATGCTCATGAGTTCATTGGATGTACAACAGGTAAGGTGGATA
AGAGTTCTCTACTTAGATTTCGTGAGCTTCACCGAGGATCAGGAGATGCTTATTTCAGCAGAGAAGACCTTCGACTACAT
TGAAGGTTTCGTAAGCATAAACAGAACAGGCATCCTAAACAACTGGAGGTCATCATTCAATCCACAGGACCCAGAACGGG
CTAGCCAGTTCGAAACAGACAGAAAAGTGCTCTTCTGCCTTGAGATGACAAAGAACTTCAACCCTGAAGAAGCTGACATC
ATGGAACAGGTGAGCCAATGATTTGTCCTTGTGTTACTAAAGATGTTTGTGTATAAAATGTTATCAGGTGGCCTGAGTGG
TTGAATTCCATATGTATATGTGTTTACAGGAGGTCCATGCACTACTATCTCAACTCAGATACACACCAGCGTCCTTATTC
CACACGGACGTCACTTACATGGAGTTCTTGGATAGGGTGCACTCCTCTGAGATAAAGCTGAGAGCTAAGGGCTTGTGGGA
AGTCCCACACCCATGGCTTAATCTCATCGTCCCAAGAAGCACTGTCCATACATTTGCAAAGCAGGTCTTTGGGAAAATCC
TCGAAGATAACAACAATGGTCCCATATTGCTCTACCCAGTGAACAAGTCCAGGTAAATTGCTTTATGTACTGAAATCAAA
AACCCCATTCAGAAACTCTTATACATCATGTCATAGTATTTTC-------------AAGTGAATGATTCATCTTGTTTCA
TGCAGATGGGACAACCGAACATCAGTGGTCATACCAAATGAGGAAGTTTTCTACCTGGTGGGATTCCTACACTCGGCGAT
AGGCCCCCACAGCATCAAACGTACACTGAACCTGAACAACCAGATAATAGAGTTCTCTAACAAAGCAAGTATTGGGGTGA
GGCAATATCTTCCAAACTACACCACAGAACCCGAGTGGAAAGCCCACTATGGGGCTAGGTGGGACGCATTTCAACAGAGG
AAAAACACCTATGACCCACTGGCAATCCTAGCTCCAGGACAGAGAATATTTCAAAAGACACCAGCGTCACTACCCTTGTC
CTCATGAGAGTTTCTACTGTAAAAAATGTGTAGCAATATGTCTATGTTTTTTTTTTTGGAATAGTTTGAATTGCTTACCA
CATATGTCACGTGGTTAGCAATATGTCTATGTTAGTATGGAACTATAGTCACTTTGCAAAAGATAACGAACTGTAGCGTG
AAGAACACAGTGTACAGAGTGGTGACTATTAAGTAGTGGTGATGCTCAAAATACTTTTAGCAGTGAGATCAATTAAGATC
AGCAATGACATACCTTTGAGTTGTGTCTGATCCGCTTTTGAAGCAATCATTTGAGAATTATATCGGTCCATGAAACAGCT
GTTGTTACAGCACAAAGATAAAGCCATGCAATGATGAACTGAACCACTAACCAGTGGAACTCATGCTGAATACTGTGTTA
ATTGATGACGGGTAGAAAAGGCTGGTCTCAGGTAGACCGGTGATTAACAAATAAAGGTGTCTGACAGACTGACATGTGAA
AGAGACCTGTATAAATGCAGAAAATGAACTGAGTTCCGCCCAGGAAAAAATATTATGTATTGGTGCAGGAAGCCA-----
--------------------------------------------------------------------------------
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---------------------CAAAAAATCTTTTTAAAGAAAGAATATGTCTATA--TAATCTGAATCTTGCTGAAACTC
CTCAGCAACCAGAAACTAAAGAATCAAAAGTACAAAAGGTGAATGGCCTGTAATATATACTGACATGAGCGAAATAATGC
CAATATAAGTAAGATGCATATGAAGTAAAGGCTGCATCTAACTAGAGTAGATTGAGGTATTATTAAATCATTATCATTGT
AATCACTTTCCACCATGAATATGATACTGTTTAGCTTATGATTGTCTGTTAAAAGCTTGAGGGATCGAGTCACGATCAAG
TAGTGTAAGAGTTCACTATATACTTGTGTCAAGTTATAGTTATACACATCAGTCTTAACAAAGGGGCTGGAGCTAATAAT
TCTAAACATCCAATTAAGTGGAAAAGGGATGGATAGGCTA------AGCCAAATGTAAATCGTTCACATCAGCATATACG
TCAATAACAGCCACATAACAT
>chr1B_1
GCGAGCAATGCCATGTGGGCAAAGGGATTCTACAATATCAAGCTAAAGCTCCTGACCACTAAAAAAA-GGAAAAATGCCT
AGGTG-ATCCATGTCCATAAGATTTTGCAACCACAAAATATCAAATTCTAGAACTCAAAATGCTGAAAAGGATATTTCTA
TCAGCATGTCTATAAATGGCCAGACAGAAGGATTCTTACCGATATACATGTCTGCGAAAATAGATTTGCATGAAGTCAGA
AAACAGTCCCACCAGCATCTGAAAAAACATCTGGGAATAAGCCTTATCAGATATGCTCAACAAGATGCTTGTCACTCACA
AATCCAAAAGCACAGAGATAACATCTTGGCTTGTCCTGCCGAACATCAATTGAATTTGAGGGATCAAGTGGGCCTGCTCG
ATAGCAATCAGGTTTGCCACTTGAATCAATTTGTTAGTACCATCTGATGACTTGATCAGAAGTTCAATCCTGCTGAGATA
CACAT---GTACACAAGTTAAATATCTGTGTCTGTTAACTGC-TTCTGTTTCATCTGTGCCATGTCCTTGTTTTCTTTCT
CCCTGGCAAGGTGCAGTCAGTGATATGTTTAGTGATAGACAGAGCATACTGAGTGAATGCATCATTTTGCCCTTCCTCCA
TACACT-------TCCTGACAGTTGTCGCAGGATGCTTAAAACATAAGCCAGAAAGAACGAATACCAGACTCTAGAATGG
AACCATTCCACCACTGCAACATAATCTTTGATCCAAATTGTCCTAGCAGCCTGTCCTCACACAGTCACACAGGTTCTAGT
ACCAAACAGTGCCCTGGACTTGTTTGACCACACCACTACCTGCACCAGCCCACATACGTACCCTTCAAGTTCTCCTTTAA
ATCCCCTGCCCTCCCTCCATCTCCACTCCCATCCCTCTGCTCTTGCAGTGAACCACTACCCTGCTACACATCTTTCATCT
TTCTCCTGAAAACATCACCACTGAACTTGTTTATTCTTGACCTACAGAAGAGCCATGAAGCAATTAGTCCTGCAGTACCT
GAAGCTGTTCCTGTTGCTAGGGCTTAGCGGAGTCACAACCGAGCACGTGCCTAAATATGATGTGCTTGCATCCCTGGGGA
CGCTCCCCCTTGACGGCCATTTCAGTTTCCACGACTTGCCTGCAGCTGCAAGGGACTTCGGCAACCTCTCCAGTTTCCCG
CCAGTCGCTGTGCTTCACCCAGGTTCAGTGGCTGACATTGCCAGAACCGTGAGGCATGTGTTCTTGATGGGTGAGCACTC
CACGCTCACAGTGGCAGCTCGTGGACATGGGCACTCGCTATATGGGCAGTCCCAGGCTGCTGGAGGGATTGTCATCAGAA
TGGAATCTCTTCAGAGTGTCAAAATGCAGGTGCATCCTGGTGCATCACCGTATGTGGATGCCTCAGGTGGAGAACTCTGG
ATAAATGTCTTGAAAAAGACGTTGAAGTATGGTTTGGCGCCGAAGTCATGGACAGACTACCTCCACCTTACGGTCGGGGG
CACGTTGTCAAATGCGGGTGTCAGCGGGCAGACATTCCGGCATGGTCCACAGATCAGCAATGTGAACGAACTGGAGATTG
TAACTGGTATGAACTGACCTATATATTAGGTTGATTTGAACAACTAGGAGAGTAAATAATGTGGCTAACTTTCTACCATG
ATTTCCAAATGCAGGAAGAGGTGATATTATCACTTGCTCACCAGAACAGAACTCTGATCTCTTCCATGCTGCTCTTGGTG
GTCTAGGTCAATTTGGCATCATTACTCGGGCCAGGATCGCTCTTGAGCCTGCTCCACAAATGGTAAATCGAAAGAACACA
TTTGTTACAACTCCATGCTAGTACATTTTAGTAAGCATATGCTCATGAGTTCATTGGATGTACAACAGGTAAGGTGGATA
AGAGTTCTCTACTTAGATTTCGTGAGCTTCACCGAGGATCAGGAGATGCTTATTTCAGCAGAGAAGACCTTCGACTACAT
TGAAGGTTTCGTAAGCATAAACAGAACAGGCATCCTAAACAACTGGAGGTCATCATTCAATCCACAGGACCCAGAACGGG
CTAGCCAGTTTGAAACAGACAGAAAAGTGCTCTTCTGCCTTGAGATGACAAAGAACTTCAACCCTGAAGAAGCTGACATC
ATGGAACAGGTGAGCCAATGATTTGTCCTTGTGTTACTAAAGATGTTTGTGTATA--GTGTTATCAGGTGGCCTGAGTGG
TTGAA-TCCATATGTATATGTGTTTACAGGAGGTCCATGCACTACTATCTCAACTCAGATACACACCACCGTCCTTATTC
CACACGGACGTCACTTACATGGAGTTCTTGGATAGGGTGCACTCCTCTGAGATAAAGCTGAGAGCTAAGGGCTTGTGGGA
AGTCCCACACCCATGGCTTAATCTCATCATCCCAAGAAGCACTGTCCATACATTTGCAAAGCAGGTCTTTGGGAAAATCC
TCGAAGATAACAACAATGGTCCCATATTGCTCTACCCAGTGAACAAGTCCAGGTAAATTGCTTTATGTACCGAAATCAAA
AACCCCATTCAGAAACTCTTATACATCATGTCATAGTATTTTC-------------A-------------TCTTGTTTCA
TGCAGATGGGACAACCGAACATCAGTGGTCATACCAGATGAGGAAGTTTTCTATCTGGTGGGATTCCTACCCTCGGCGAT
AGGCCCCCACAGCATCAAGCGTACACTGAACCTGAACAACCAGATAATAGAGTTCTCTAACAAAGCAAGTATTGGGGTGA
AGCAATATCTTCCAAACTACGCCACAGAACCCGAGTGGAAAGCCCACTATGGGGCTAGGTGGGACGCATTTCAACAGAGG
AAAAACACCTATGACCCCCTGGCAATCCTAGCTCCAGGACAGAGAATATTTCAAAAGACACCAGCGTCACTACCCTTGTC
CTCATGAGAGTTTCTACTGTAAAAAATGTGTAGCAATATGTCTAT----TTTTTTTCGGAATAGTTTGAATTGCTTACCA
CATATGTCACGTGGTTAGCAATATGTCT--GTTAGTATGGAACTATAGTCACTTTGCAAAAGATAGCGAACTGTAGCGTG
AAAAACACAGTGTACAGAGTGGTGACTATTAAGTAGTGGTGATGCTCAAAATACTTTTAGCAGTGAGATCAATGAAGATC
AGCAATGACATACCTTTGAGTTGTGTCTGATCCTCTTTTGAAGCAATCATTTGAGGATTATATCGGTCCATGAAACAGCT
GTTGTTACAGCACAAAGATAAAGCCATGCAATGATGAACTGAATCACTAACCAGTGGAACTCATGCTGAATACTGTGTTA
ATTGATGACGGGTAGAAAAGGCTGGTCTCAGGTAAACCGGTGATTAACAAATAAAGGTGTCTGACAGACTGACATGTGAA
AGAGACCTGTATAGATGCAGAAAATGAACTGAGTTCCACCCAGGAAAAAATATTATGTATTGGTGCAGGAAGCCGGATGG
ATGAAGCGGCGCCAAGCTTCTGGCATTCTCTGTGACAAGAGAGTGCCACAAAAGCTAAAAGGCAAGTTCTACAGGACGGC
GGTTCGACCCGCAATGTTGTATGGCGCTGAGTGTTGGCCGACTAAAAGGCGACATGTTCAACAGTTAGGTGTGGCGGAGA
TGCGTATGTTGAGATGGATGTGTGGCCACACGAGGAAGGATCGAGTCCGGAATGATGATATACGAGATAGAGTTGGGGTA
GCACCAATTGAAGAGAAGCTTGTCCAACATCGTCTGAGATGGTTTGGGCATATCCAGCGCAGGCCTCCAGAAGCTCCAGT
GCATAGCGGATGGCTAAAGCGTGCTGAGAATGTCAAGAGAGGGCAGGGTAGACCGAATTTGACATGGGAGGAGTCCGTTA
AGAGAGACCTGAAGGATTGGGGTATCACCGAAGAGCTAGCTATGGACAGGGGTGCATGGAAGCTTGCTATCCACGTGCCA
GAGCCATGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCCAACTTGCTTGGGACTAAAGGCTTTGTTGT
TGTTGTATTGGTGCAGGAAGCCACAAAAAATCTTTAAAGAAAGAATATGTTTATATATAATCTAAATCTTGCTGAAACTC
CTCAGCAACCAGAAACTAAAGAATCAAAAGTACAGAAGGTGAATGGCCTGTAATATATACTGACATGAGCGAAATAATGC
CAATATTAGTAAGATGC-----AAGTAAAGGCTGCATCTAACTAGAGTAGATTGAGGTATTATTAAATCATTATTATTGT
AATCACTTTCCACCATGAATATGATACTGTTTAGCTTATGATTGTCTGTTAAAAGCTTGAGGGATCGAGTCACGATCAAG
TAGTGTAAGAGTTCACTATATAATTGTGTCA------AGTTATACACATCAGTCTTAACAAAGGGGCTGGAGCTAATAAT
TCTAAACATCCAATTAAGTGGAAAAGGGATGGATAGGCTATAATTAAGCCAAACATAAATCGTTCACATCAGCATATACA
TCAATAACAGCCACATAACAT
>SNPs
---------S--------------------------------------------S------------S------------
------------------------------------------------S-----------------------S-------
------------------------------------------------------------------S-------------
-----------------------S------------------S-------------------------------------
-----S---------------------------------------------------------------S----------
---------------------------------S----------------------------------------------
--------------------------------SS--------S--------------------------------S----
---------------------------------------------------------------S----------------
---------------------------S-S--------------------------------------------------
------------------S-------------------------------------------------------------
----------------------------------------------------S-S--S----------------------
--------------------------S-----------------------------------------------------
-----------------------------------S------------------------------S-------------
----------------------------S---------------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------S----S------------
-------------------S------------S-----------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-------------------------------S--------SSSSSSSSSSSSS------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
----------------------------------------------------------------S---------------
-----------------------S------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
------S------------------------S------------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------S--------------------------------S-----------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
-----------------------------S-S------------------------------------------------
----------------------------------S-----------S---------------------------------
--------------------------------------------------------------------------------
-------S-----------------------------------------------------S------------------
---------------------
>forward_264
--------------------------------------------------------------------------------
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----CAGTCCCCCAGCATCTGAAG--------------------------------------------------------
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>reverse_2223
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--------------------------------------------------------------GTCAGATGGCCTGAGTGG
TT------------------------------------------------------------------------------
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---------------------
>forward_739
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
AACCATTCCACCACTGCAG-------------------------------------------------------------
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>reverse_2228
--------------------------------------------------------------------------------
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-------------------------------------------------------------------ATGGCCTGAGTGG
TTGAATTC------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>forward_907
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CCCTCCCTCCATCTCCACA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_2822
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GCACAGAACCCGAGTGGAAA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>forward_2326
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CCACCGTCCTTATTC
CACACA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_3497
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TTATTGGTGCAGGAAGCCACA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
