>input_sequence_40639
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-----------------------------------------------------------------------ATGGAGGAG
GTGGAGGAGGCCAACAGGATGGCCGTGGAGAGCTGCCACAGAGTGCTCGGCCTGCTCGCCCAGACCCAGGACCCGGCGCA
GCTCAGGAGCATAGCGCTGGGGACGGACGAAGCCTGTGCCAAGTTCAGGAAGGTGGTCTCCCTCCTCGGCAACGGCAACG
GCAACGGCAACGAAGGAGGGGGAACCCACCATCCTAGAGCCAAGCTGGTGAGCAGAAGGCAGACCCCGGGGTTCTTGAGC
CAGAAGAGCTTCCTGGACAACAACACCCCGGTGGTGGTGCTGAACAGCGCGCACCCTTCGACCAGCTCGGCTCAGGTGTA
TCCTAGCAGCAGAAACAGCATTCTGGATTCATCACAGGCCGCGCACCCGATCGGAGGGCCTCCCAAGCTGGTGCAGCCGT
TGTCCGCGCACTTCCAGTTCGGCGACTCATCGCGGTACAACCAGTTCCAGCAGCAGCATCAGCACCAGCAGCAGAAGATG
CGGGCCGAGATGTTCAAGAGAAGCAACAGTGGGATCAACCTCAAGTTTGACAGCCCCAGTGGCACCGGGACGATGTCGTC
CGCGAGGTCCTTCATGTCATCTTTGAGCATGGACGGCAGTGTGGCCAGCCTGGATGCCAAGTCTTCCTCCTTCCATCTGA
TCGGTGGGCCTGCTATGAGCGACCCGGTGAACGCGCAGCAGGCGCCGAGGAGGCGGTGCTCGGGACGTGGGGAGGATGGA
AATGGCAAGTGTGCTGCAACTGGCAGGTGCCATTGTTCTAAGAGAAGGTAGTAAATCTGCTATCTTTGGTGTTTCTGATT
CTTTTGATTCAAGACAGGGCACCATGATAATTGTTATCTACCCTATTTCAGCAGGAAGTTGCGGGTGAAGAGGACGATTA
AAGTTCCCGCAATTAGTAATAAAATTGCTGATATACCTCCAGACGAATACTCCTGGAGGAAGTATGGGCAGAAGCCAATT
AAGGGTTCCCCTCATCCCAGGTATTCTTTAGTAATGTAATCTTTCTAGTTGTGT--------------A---CTGCACAT
TTGATACTTTGTAGGGTGGTTTTTCTTTGC----------------TAACATTTTTATTATACAGTGATAGAAATTAGTC
ATGATGATGCTGTAATCACCATAGCACATCAACTTTGTTGGTAAAGATGTGATCATTTACATGCTATTATGGAATGCACG
ACTG-ATACAACCATGAGCACTCAAGTGCCTTGTGATAACTAATGTGTCAATGATAATCAGAACACACTTTATCCAAGGA
ATGTGTTTTCTTGGGTGCTGTACATGTTTGTTTTCTATCCTCTATGCGATTCGGTATCCATGAGGTGTCGATGCCTTAAT
TGCTATGACATTAACTAATTACTTCGTGGATGATGCCATTCTTTCTTTCCCATGCCACTTTTGGAAAA-TATATCAATCA
TGAGTCTTAAAGTGACCACTTCTTAATTCAACCGAGATCATGCTATCGTGATTCACCCACCATATA--------CATATA
ATAATCCTATCCAAATGACTTGCC-------------------------TGATGATAAAACACACAAATATAGC---TGT
ACAGTAATGGCAACCACATAAATATGGTCCTCTGAATTGGCACAGAATTTTTCCTCTTTTTAATAAACACCGGATGTAGA
AACATGGCTCGTTGTACTTCTATTTTTATTTCCAACCCAACATGTTTCTAAGTTTGATTTTTCCCTGGAGAAGACTAACC
AATGG-CTGAACTCAAAATGCAGGGGGTACTACAAATGCAGCAGTGTGAGGGGTTGCCCTGCGCGGAAGCATGTTGAGCG
TTGCGTGGATGATCCATCGATGCTCATTGTGACATACGAGGGTGAACATAACCATACACGAATGCCAACTCAGTCTGCGC
AAGCTTAGGGAATCCCTTGATTATTACTCTTTTCAGGAAATGCCAACTCGCCGGCACTTGTTGGACAGACTGCGTTCTTC
TCCTAA--------------------------------------------------------------------------
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---------------------------
>chr4A_1_TraesCS4A01G246000
GAGGAACAAATCGTCCGCATGTGTGCCTCCCTGACCTTTTCCATGTGAGCCGAGTG-----GCAATGGTCAACAAATCAG
AAATCACTTCACCCCACACCACACTGACCGACCCATGTCCCTCCCTCCTTTGACGTTTTGACCCACCCCATCATCCCATC
TCACCGCTAAACTAAACTAAACTAAAACCCTTCCCCAAATATAGATCTCCTGCCGTCCGTCG-----------CCGCTCC
GACGGCCCGGATCCGCCCAGCGGCAGCGTTTCCTAACGTGGCGCCGCGATAAACTAGGCCAAGTGGCGACGAATTTTCCA
CGGCGTGGGGGGCCGGGGAGCAATATTATACAGGCCGGCGGCCTCGGCTGCAGGAAAACAAATGGGGACGGAGAATTACT
CCTAATTTCTTCTCCACCCCG---------GCCTGGTCTCCGTCCGCTCCTTCGTTCACACCTTCTTCCACTA----GCT
GGTCTCCGGTGGTGGTGGGGGACGGGACGACCGTCGTCCGTCGACTCCGAGCGAGCTCGCGGCCGCGGTTCTGGATTCAT
CGCGCGCGCGAGAGGATCCCCCTCCCCGAGGTGAGT--------------GGGCGGGCGGGCTCGGCGCCGTCGTGCTTG
C-------TTGCGCGGGCGAGCGCTTCTCTTTCTTGGGGGAATCTTGG-AGGGTGTGGCGGTGGTGGTGGGGTTGTTGCC
CCCGCTTGATGCGTCCGCACGCAACAAAATCGCCTGCTAGGGTCGCTTCTTGCCGCCGCGGGTTCATCCTCTCTCTCTCT
------------CTCTCGGTGCCCACTCCTGCCGCTTCTGCCGGACT----------GGCTTCCGCCGTGATCCGGTCCG
GGAACGCTTTCTTGGTCCTCAGCCTGTTGCTCCTGTGATGGCTGATGCGAGTAATACAGAGT-------AGCAGCCTTGG
TGAGCTTTTCTTGAGATCTGAGTGAGTTTTCTCTCCCATTTCCTGCTCTGCAGATCTGCCGTGGTAGGGTGAGAGCTGCC
GAGTAGCCGAGGTGCTGGTGAGCTTCTCAAGAAAGTAAA-------------------------------AATGGAGGAG
GTGGAGGAGGCCAACAGGATGGCCGTGGAGAGCTGCCACAGAGTGCTCGGCCTGCTCGCCCAGACCCAGGACCCGGCGCA
GCTCAGGAGCATAGCGCTGGGGACGGACGAAGCCTGTGCCAAGTTCAGGAAGGTGGTCTCCCTCCTCGGCAACGGCAACG
GCAACGGCAACGAAGGAGGGGGAACCCACCATCCTAGAGCCAAGCTGGTGAGCAGAAGGCAGACCCCGGGGTTCTTGAGC
CAGAAGAGCTTCCTGGACAACAACACCCCGGTGGTGGTGCTGAACAGCGCGCACCCTTCGACCAGCTCGGCTCAGGTGTA
TCCTAGCAGCAGAAACAGCATTCTGGATTCATCACAGGCCGCGCACCCGATCGGAGGGCCTCCCAAGCTGGTGCAGCCGT
TGTCCGCGCACTTCCAGTTCGGCGACTCATCGCGGTACAACCAGTTCCAGCAGCAGCATCAGCACCAGCAGCAGAAGATG
CGGGCCGAGATGTTCAAGAGAAGCAACAGTGGGATCAACCTCAAGTTTGACAGCCCCAGTGGCACCGGGACGATGTCGTC
CGCGAGGTCCTTCATGTCATCTTTGAGCATGGACGGCAGTGTGGCCAGCCTGGATGCCAAGTCTTCCTCCTTCCATCTGA
TCGGTGGGCCTGCTATGAGCGACCCGGTGAACGCGCAGCAGGCGCCGAGGAGGCGGTGCTCGGGACGTGGGGAGGATGGA
AATGGCAAGTGTGCTGCAACTGGCAGGTGCCATTGTTCTAAGAGAAGGTAGTAAATCTGCTATCTTTGGTGTTTCTGATT
CTTTTGATTCAAGACAGGGCACCATGATAATTGTTATCTACCCTATTTCAGCAGGAAGTTGCGGGTGAAGAGGACGATTA
AAGTTCCCGCAATTAGTAATAAAATTGCTGATATACCTCCAGACGAATACTCCTGGAGGAAGTATGGGCAGAAGCCAATT
AAGGGTTCCCCTCATCCCAGGTATTCTTTAGTAATGTAATCTTTCTAGTTGTGT--------------A---CTGCACAT
TTGATACTTTGTAGGGTGGTTTTTCTTTGC----------------TAACATTTTTATTATACAGTGATAGAAATTAGTC
ATGATGATGCTGTAATCACCATAGCACATCAACTTTGTTGGTAAAGATGTGATCATTTACATGCTATTATGGAATGCACG
ACTG-ATACAACCATGAGCACTCAAGTGCCTTGTGATAACTAATGTGTCAATGATAATCAGAACACACTTTATCCAAGGA
ATGTGTTTTCTTGGGTGCTGTACATGTTTGTTTTCTATCCTCTATGCGATTCGGTATCCATGAGGTGTCGATGCCTTAAT
TGCTATGACATTAACTAATTACTTCGTGGATGATGCCATTCTTTCTTTCCCATGCCACTTTTGGAAAA-TATATCAATCA
TGAGTCTTAAAGTGACCACTTCTTAATTCAACCGAGATCATGCTATCGTGATTCACCCACCATATA--------CATATA
ATAATCCTATCCAAATGACTTGCC-------------------------TGATGATAAAACACACAAATATAGC---TGT
ACAGTAATGGCAACCACATAAATATGGTCCTCTGAATTGGCACAGAATTTTTCCTCTTTTTAATAAACACCGGATGTAGA
AACATGGCTCGTTGTACTTCTATTTTTATTTCCAACCCAACATGTTTCTAAGTTTGATTTTTCCCTGGAGAAGACTAACC
AATGG-CTGAACTCAAAATGCAGGGGGTACTACAAATGCAGCAGTGTGAGGGGTTGCCCTGCGCGGAAGCATGTTGAGCG
TTGCGTGGATGATCCATCGATGCTCATTGTGACATACGAGGGTGAACATAACCATACACGAATGCCAACTCAGTCTGCGC
AAGCTTAGGGAATCCCTTGATTATTACTCTTTTCAGGAAATGCCAACTCGCCGGCACTTGTTGGACAGACTGCGTTCTTC
TCCTAAATTAGGACTGCGAAGTGACAAATATGGGATCCATTTGAGCAGTTGATGTGTCGGTTGGCCTCCTGACCTACATG
TTTTGTAGTGAGTGTCAAGTGGGAGGATGCAAAAATGTTGTTCTCCCTTATGGAGGTAATCAGAATGATGAAATGTTAGA
ACATGATGTTAGATAGGACACCTGAGATTTGCTCAGGAGGGAGTGCGAAGAGTTGGAAGGGAAGATAGAAATTGGGGGAT
GATATGTCTGTAAAGTAGCAAAAATTGATAAAATCACTGGGTCTCCCTCTTTTTGTACCAAGTGCACAAAAAGGCTGGTT
TAAAATCAAAAATAAATGAGACAGAACCAATTTGTGGTTGGATACATTGGTGT---GTTGTACCTCCAGGCTCTAGCTCA
TCAGAGACAAAACCAAGTTAAATATCTTGTGTGTG-----------------------------------------CTCT
TCAATAGTCAGCTCGTTTGATTAAGGATGTTTATATCATCACAACTTGTTAGTTGCCAATTAATTTGTGTTTTATAATTT
AAACGAACACTGATTT-AACCCATAAAGGGAGTATTTTCTAGAGAATCCTACTACCTCTATACCAAAATATAAGCTG--T
TTTTTAGGTTAAACTAGCCTAAAAACA-TTTTATATTTTGATATGGAGGGAGTACAAAATAAATAAACGACTGGTAATTA
AAATGTACTACTAATACATGGAAAGCCATTGACCCAAAAAGTCGTTGTAGATTCCAGCGAATGTAAGGGGCTGTTTGGAT
TGCAGCCGCGGCTTGCCCAACCAATTTTTTGGTCGTTGACTGCTCCCACATGCTTCGCTTGAATCAGCGCCAGG------
-------GCCAATATTTTGGTTGCCCCGTTCAATTTCTATGCCCGCGCGTTGGTGAGATCATGGCGGTTCAATTTCTATG
CCCGCGCGTTGGCGAGATCATGGCGGCAGAATCCTTGGCCAAATCTTTGGCGAGCCAATTTTGGTGGGCTGGCTGGGGTG
TGATCCAAACAACCCCTAAGACAACAA
>chr4D_4
---GAACAAATCGTCCGCATGTGTGCC-CCCTGACCTTTTCCATGTGAGCCGAGGCGAGGAGCAATGGTCAACAATCACT
TCTCT------------------------GACCCATGTCCCTCCCTCCTTTGACGTTTTGACCCACTCCATCATCCCATC
TCACCGCTAAACTAAACTAAACCAAAACCCTTCCCAATAGA----TCAACCGCCGTCCATCG-----------CCGCTCC
GACGGCCCGGATACGCCCAGCGGCCACATTTCCTAACGCAGCGCCGCGATAAACTAGGCCAAGTGGCGACGCTTTTTCCA
CGGCGTGGGGGGCCGGGCCGCAATATTATACAGACCGGCGGCCTCGGCTGCAAGAAAACAAATGGGGACGGAGAATTAC-
--TAATTTCTTCTCCCCCCCCCCCCCCTGCGCCTGGTCTCCGTCCGCTCCTTCGTTCACACCTTCTTCCACTAGGACGCT
GGTCTCC---GGTGGTGGGGGACGAGACGACCGTCGTCCGTCGACTCCGAGCTCGCTCACGGCCGCGGCTCTGGACTCAT
CGCACGCGCGAGAGGATCCCCCTCCCCGAGGTGAGTCGCGGCGTCTCTGCGTGCGTGCGGGCTCGGCGCCGTCGCGCTTG
CTTGCGCGTTGCGCGGGCGAGCGCTTCTCTTTCTTGGGGGAATCTTGGGAGGGTGTGGTGGTGGTG---GGGTTGTTGCC
CCCGTTTGATGCGTCCGCACGCAACAAA-TCGCCCGCTAGGGTCGCTTCTTGCCGCCGCGGGCTCATCCTCCACG-CCCG
CCCGGCTCTCTCCTCTCGGTGCTCACTCCTGCCGCTTCTCGGGGTTCTGCCGGACTAGGCTTCCGCCGTGATCCGGTCCG
GGGACGTTTTCTTGTTCCTCAGCCTTTAGCTCGTGTGATTGCTGATGCGTGGCCGTGCGAGTGATGTGGAGTAGCCACGG
TGAGCTTTTCTTGAGATCTGAGTGAGTTTTCTCTCCCATTTCCTGCTCTTCAGATCTGCTGTGGT-----GAGAGCTGCC
GAGAAGCCGACGTGCTCGTGAACATCTCAAGAAAATAAA-------------------------------AATGGAGGAG
GTGGAGGAGGCCAACAGGATGGCCGTGGCGAGCTGCCACAGAGTGCTTGGCCTGCTCGCCCAGACCCAGGACCCGGCGCA
GCTGAGGAGCATAGCTCTGGGCACGGACGAAGCCTGTGCAAAGTTCAGGAAGGTGGTCTCCCTCCT------------CG
GCAACGGCAACGAAGGAGGGGGAACCCA---TCCTAGAGCCAAGCTTGTGAGCAGAAGGCAGACCCCCGGGTTCTTGAGC
CAGAAGAGCTTCTTGGACAACAACACCCCGGTGGTGGTGCTGAACAGTGCGCACCCCTCGACCAGCTCTGCCCAGGTGTA
TCCCAGAAACAG---CAGCATTCTGGATTCA---CAGCCCGCGCACCCAATCGGGGGGCCTCCCAAGCTGGTCCAGCCGT
TGTCCGCGCATTTCCAGTTCGGCGACTCGTCGCGGTATAATCAGTTC---CAGCAGCATCAGCACCAGCAGCAGAAGATG
CGGGCCGAGATGTTCAAGAGAAGCAACAGTGGGATCAACTTGAAGTTTGACAGCCCCAGTGGCACGGGGACGATGTCGTC
CGCGAGGTCCTTCATGTCGTCTTTGAGCATGGATGGCAGCGTGGCCAGCCTGGATGCCAAGTCTTCCTCCTTCCATTTGA
TCGGTGGGCCTGCCATGAGCGACCCGGTGAATGCGCAGCAGGCGCCAAGGAGGCGATGCTCAGGGCGTGGGGAGGATGGA
AATGGCAAGTGTGCTGCAACTGGCAGGTGCCATTGTTCTAAGAGAAGGTAGTAAATCTGCTATCTTTGCTGTTTCTGATT
CTTTTGATTCAAGATAGGATCCCATGATAATTGTTCTATACCCTATTTCAGCAGGAAGTTGCGGTTGAAGAGGACGATTA
AAGTTCCCGCAATTAGTAATAAAATTGCTGATATACCTCCAGATGAATACTCCTGGAGGAAGTATGGGCAGAAGCCAATT
AAGGGCTCCCCTCATCCCAGGTATTCTTTAATAATGTAATTTTTCTAGCTGTGT--------------AGAACTGCACAT
TTGATACTTTGTAGGGTGATTTTTCTTTGC----------------TAACAGTTTTATTATACAGTGATAGAAATTAGTC
ATGATGATGCTATAATCACCATAACACATCAACTTTGTTGGTAAAGATGTGATCATTTACATGCTATTATGGAATGCACG
ACTGCATACAACCATGAGCACTCAAGTGCCTTGTGATAACTAATGTGTCAATGATAATCAGAACACACTTTATCCAAGGA
ATGTGTTTTCTTGGGTGCTGTACATGTTTGTTTTCTGTCCTCTACGTGATTCGGTATCCATGAGGTGTCGATGCCTTAAT
TGTTATGACATTAAATAATTACATCGTCGATGATGCCATTCTTTCTTTCCTATGACACTTTTGGAAAA-TATATCAATCA
TGAGTCTTAAAGTGAGCACTTCTTAATTCGATGCAGATCGTGCTATCGTGATTCACTTACTCTTTCTCTCTCACCATATA
ATAATCCTATCCAAATGACTTGCCCACCATGTCTCTGGCTTAAATGGCCTGATAATAGAATACACAAATATAGC---TAT
ACAGTTATGGCAATCACATAAATATAGTTCTCTGAATTGGCACATATCTTTTCCTCTTTTTAACAAACACTAGATATAGA
AACATCGCTCTTTGTACTTCTATTTTTGTTTCAAACCCAACATGTTACTAATTTTGATTTGTCCCTGGAGAAGAGTAACC
CAATGTCTGAACACAAAATGCAGGGGGTACTACAAATGCAGCAGTGTGAGGGGCTGCCCTGCGCGGAAGCATGTTGAACG
TTGCGTGGATGATCCGTCGATGCTCATTGTGACATACGAGGGCGAACATAACCATACGCGAATGCCAACTCAGTCTGCGC
AAGCTTAGGGAATCCCCCAATTATCACTCTTTTCAGGAAAGGCCAACTCGCCGGCACTTGTTGGACAGACTGCGTTGTTC
TCCTAAATTAGGATTGCGAAGTGACAAATATGGAATCCATTTGAGCAGTTGATGTGTCGATTGGCCTCCTGACCTACATG
TTTTGTAGCGAGTGTCAAGTGGGAGGATGCAAAAATGTTGTTCTCCCTTAAGGAGGTAATCAAAATGATGAAATGTTAGA
ACAAGATGTTAGATAGGAAACCTGAGATTTGCTCAGGAGGGAGTGCGGAGAGTCGGAAGGGAAGGTAGAAATTGGGGGAT
GATATGTGTGTAAAGTAGCAAAAATTGATAAAATCACTGGGTCTCCCTCTTTTTGTACCAAGTGCACAAAAAGTCTGGAT
TAAAATC--AAATAAATGAGACAGAACCAATTTGTGGTTGGATACATAGCTGTGTAGTTGTACCTCCAGGCTCTAGCTCA
TCAGAGACAAAACCAAGTTAAATATCTTGTGTGTGTCTCACTAAGCTGATTATCGTCTGGGAAGTGGGGTGACGTTCTCT
TCAATAGTCAGCTCGTTTGATTAAGGATGTTTATATCGTCACAACTTGTTAGTTGCCAATTACTTTGTGTTTTATAATTT
AAACGAACACTGATTTTAACCCATAAAGGGAGTATTTTCTAGAGAATTCTACTGCCTCTGCACCAAAATATAAGACG--T
TTTTTAGGTTAAACTAGCCTAAAAATCGTTTTATATTTTGATATGGAGGGAGTACAAAATAAATGAACGACTGGTAATAA
AAAT---CTACTAATACATGGAAAGCCATTGAACCAAAACGTCGTCATAGATTCCAGCGAATGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>chr4B_4
---GAACAAATCGTCCGCATGTGTGCC-CCCTGACCTTTTCCATGTGAGCCGAGGCGAGGAGCAATGGTCAACAATCGCC
-----------CCACACACCACACTGACTGACGACCCATG-TCCCTCCTTTGACGTTTTGACCCACCCCATCATCCCATC
TCACTCACCG-CTAAACTAAACTAAAACCCTTCCCAAAAGT----TCTCCGGCCGTCGATCTCCTCGCCTGCACCGCTCC
AACGGCCCAGATTCACCCAACG-----------------------------------GCCAAGTGGCGACGCTTTTTCCA
CGGCGTGGGGGGCCGGGTCGCAATATTATACAGACCGGCGGCCTCGGCTGCAAGAAAACAAATGAGGACGGAGAATTAC-
--TAATTTCTTCTCCCCCACTGCCTGCTGCGCCTGGTCTCCGTCCGCTCCTTCGTTCACACCTTCTTCCACTA----GCC
GGTCTCC---GGTGGCGGGGGACGAGACGACCGTCGTCCGTCGACTCCGAGCTCGC----GGCCGCGGTTCTGGACTCAT
CGCACGCGCCAGAGGAT-CCCCTCCCCGAGGTGAGTTGCG-------TGCGGGCGGGCGGGCTCGGCGCCGTCGTGCTTG
C-------TTGCGCGGGCGAGCGCTTCT--TTCTCGGGGGAATCTTGGGAGGGTGTGGTGGTGGTG---GGGTTGTTG-C
CCCGTTTGATGCGTCCGCACGCAACAAA-TCGCCTGCTAGGGTCGCTTCTTGCCGCCGCGGGTTCGTCCTCCACGCCCCG
CCCGGCTCTCTCCTCTCGGTGCTCACTCCTGCCGCTTCTCGGGGTTCTGCCGGACTAGGCTCCCGCCGTGATCCGGTCCG
GGAACGCTTTCTTGGCCCTCAGCCTGTTGCTCGTGTGATGGCTGATGCGTGGCCGTGCGAGTGATGCAGAGCAGCCATGG
TGAGCTTTTCCTGAGATCTGACTGAGTTTTCTCTCCCATTTCCTGCTCTTCAGATCTGCCGTCGT-----GAGAGCTGCC
AAGTAGCCGAGGTGCTCGCGAGGAGTTCACGGAAGGACTGCTTCCGTTCCGGTGTCGTTCTGCGGTGAATAATGGAGGAA
GTGGAGGAGGCCAACAGGATGGCCGTGGCGAGCTGCCACCGAGTGCTTGGCCTGCTCACCCAGACCCAGGACCCGGCGCA
GCTCAGGAGCATAGCTCTGGGGACGGACGAAGCCTGTGCCAAGTTCAGGAAGGTGGTTTCCCTCCT------------CG
GCAACGGCAACGAAGGAGGGGGAACCCA---TCCCAGAGCCAAGCTTGTGAGCAGAAGGCAGACCCCCGGGTTCTTGAGC
CAGAAGAGCTTCTTGGACAACAACACCCCGGTGGTGGTGCTGAACAGTGCGCACCCTTCGACCAGCTCTGCGCAGGTGTA
TCCTAGAAACAG---CATTT---TGGATTCA---CAGCCCGCGCACCCAATCGGAGGGCTTCCCAAGCTGGTCCAGCCAT
TGTCCGCGCATTTCCAGTTCGGCGATTCGTCGCGGTATAATCAGTTC---CAGCAGCATCAGCACCAGCAGCAGAAGATG
CGGGCCGAGATGTTCAAGAGAAGCAACAGCGGGATCAACTTGAAGTTTGACAGCCCCAGTGGCACGGGGACAATGTCGTC
CGCGAGGTCCTTCATGTCATCTTTGAGCATGGATGGCAGCGTGGCCAGCCTGGATGCCAAGTCTTCCTCGTTCCATTTGA
TCGGCGGGCCTGCCATGAGCGACCCGGTGAATGCACAGCAGGCTCCAAGGAGAAGATGCTCGGGACGTGGGGAGGATGGA
AATGGCAAGTGTGCTGCAACTGGCAGGTGCCATTGCTCAAAGAGAAGGTAGTAAATCTGCTATCTTTGGTGTTTCTGACT
CTTTTTATTCAAGATAGGACACCGTGATAATTGTTCTCTACCCTATTTCAGTAGGAAGTTGCGGGTGAAGAGGACGATTA
AAGTTCCCGCAATTAGTAATAAAATTGCTGATATACCTCCAGATGAATACTCCTGGAGGAAGTATGGGCAGAAGCCAATT
AAGGGTTCCCCTCATCCCAGGTATTCT----------AATTTTTCTTGTTGTGCAAATAAAGAAGTGCAGAACTGCACGT
TCAACATGCTTCAACTTAGTTGGCTTAATCACCATAACACAATGAGTAACATTTTTATTATACAGTGATAGAAAATAGTC
GTGATGATGCTATAATCACCATAACACATCAACTTTGTTGGTAAAGATGTGATCATTTACATGCTATTATGGAATGCACG
ACTGCATACAACCATGAGCACTCAAGTGCCTTGTGATAACTAATGTGTCAATGATAATCAGAACACACTTTATCCAAGGA
ATGTGTTTTCTTGGGTGCTGTACATGTTTGTTTTCTATCCTCTATGCGATTCGGTATCCATGAGGTGTCGATGCCTTAAT
TGCTACGACATTAAATAATTACTTCGTGGATGATGCCATTCTTTCTTTTCTATGGCACTTTTGGAAAAATATGTCAATCA
TGAGTCTTAAAGAGACCACTTCTTAATTTAACCGAGATCATGCTATCGTGATTCACTTACTCTTTCTCA--CACCATATA
ATAATCCTAACCAG-TGACTTGCCCACCATG-CTCTGGCTTAAATAGCCTGATTATAGAATACACAAACATAGCTAGTAT
ACAGTAATGGCAATCACATA--TATGGTTCTCTGAATTGGCACAGATCTTTTCCTCTTTTTAACAGACACAGGATATAGA
AACATGGCTCATTGTACTTCTATTTGTATTTCAAACCCAACATGTTTCTAAGTTTGATTTTTCCCTGGAGAAGACTAACC
AATGG-CTGAACACAAAATGCAGGGGGTACTACAAATGCAGCAGCGTGAGGGGTTGCCCTGCGCGGAAGCATGTTGAACG
TTGCGTGGATGATCCATCGATGCTCATTGTGACATACGAGGGTGAACATAACCATACGCGAATGCCAACTCAGTCTGCGC
AAGCTTAGGGAATCCCTTGATTATCACTCTTTTCAGGAAATGCCAACTCACCGGCACTTGTT-GACAGACTGCGTTGTTC
TCCTAAATTAGGATTGCGAAGTGACAAATATGGGATCCATTTGAGCAGTTGATGTGTCGGTTGGCCTCCTGACCTACATG
TTTTGTAGTGAGTGTCAAGTGGGAGGATGCAAAAATGTTGTTCTCCCTTAAGGAGGTAATCAGAATGATGAAATGTTAGA
ACATGATGTTAGATAGGACACCTGAGATTTGCTCAGGAGGGAGTGCGAAGAGTTGGAAGGGAAGATAGAAATTTGGGGAT
GATATGTGTGTAAAGTAGCAAAAATTGATAAAATCACTGGGTCTCCCTCTTTTTGTACCAAGTGCACAAAAAGGCTGGTT
TTAAATC--AAAAATAAATGAGAGAACCAATTTGTGGTTGGATACATTGGTGT---GTTGTACCTCCATGCTCTAGCTCA
TCAGAGACAAAACCAAGTTAAATATCTTGTGTGTACCAAACACT------------------------------------
-------------------------GATGTTTATATCATCACAACTTGTTATTTGCCAATTAATTTGTGTTTTATAATTT
AAACAAACACTGATTTTATAACCC------AGTATTTTCTAGAGAATCCTACTACCTCTGTACCAAATGTAAGCTGTTTT
TTTTTAAGTTAAACTAGCCTAGAGACA-TTTTATATTTTGATATAGAGGGAGTACAAAGTAAATAAATGACTGATAATTA
AAAT---GTATTAATACATGGAAAGCCATTGACCCAAAACGTCGTCGTAGATTCCAGCGAATGTAAGGGGCTGTTTGGAT
TGCAGCCGTGGCTCACCCAACCGATTTTTTGGTTGTTGACTGTTCCCACAGGCTTCGCTTGAATCAGCACCAGCGATTCT
GAACCACGCCACTATTTTGGTTGCCCCGTTCAATTTTTATGCCCA-----------------------------------
----CGCGTTGGCGAGATCATGGCGGCAGAATCCTTGGCCAAATATTTGGGGAGCCAATCTTGGTGGGCTGGCTGGGGTG
TGATCCAAACAGCCCCTAAAACAACAA
>SNPs
SSS------------------------S--------------------------SS-------------------SSSSS
SSSSSSSSSSS--S--------------S---------------------------------------------------
-----------------------------------S---S-SSSS-----S-------S---------------------
------------S-----------SS-S----------SS-------------------------------SS-------
-----------------SS--------------S------------------S--------------------------S
SS-------------S----S-----------------------------------------------------------
-------SSS--------------S---------------------------SS----S----------------S----
---S----------------------------------------------------------------------------
----------------------------------------------------------S-------SSS-----------
----S-----------------------S------------------------------------------SSSSS-S-S
----------------------S----------------SSS--SSS---------------------------------
--------------------------------S----------------S-SSSSSSS------------------S---
-------------------------------------------------S---------------SSSSS----------
----------------S------S--------------------------------------------------------
----------------------------S------------------S--------------------------------
---------------S--------------------------------------------------SSSSSSSSSSSS--
----------------------------SSS---------------S--------------------S------------
------------S----------------------------------S--------------------S--S--------
------S-S---SSS----------------SSS---S----------S-----------------------S-------
----------S-----------------S--------S--S------SSS------------------------------
---------------------------------------S-S-----------------------S--------------
---------------------------------S-----S------------------------------------S---
-------------S-----------------S--------------S--------S------------------------
--------------------------------------------------------------------------------
--------------S---S----------------S--------------------------------------------
-------------------------------------------S------------------------------------
------------------------------S---------S---------------------------------------
--------------------------------------------------------------------------------
-----------S-----------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------S---S-------------------------
--------------------------------------------------------SS--SS-S-S--------------
-----------------------------------------------------S---S--S-----------------S-
-------------S--------------S-----------------SS---------------S------S----S----
----------S---------------------S-----------------------------------------------
------------S----------------------------------------------------------------S--
---------------------------------------------------------S----------------------
------------------------S---------------------------------------------------S---
-------------S------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
-------SS-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------SS----
--------------------------------------------------------------------------------
----SSS--------------------------------S-----S----------------------------------
--------S----SS-------S----------S--------S-------S-----------------S----S------
-----------S------------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------------------------------------S-----S--------S--------------------
-----------S-------S-------
>forward_823
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TCTCTCTCTCTCTCGGTGCC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------
>reverse_1774
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TATGAGCGACCCGGTGAAC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------
>forward_1447
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CGGCTCAGGTGTA
TCCTAGC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>reverse_3018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------ACGAATGCCAACTCAGTCTG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------
>forward_1568
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATCGCGGTACAACCAGTTCC--------------------------------
--------------------------------------------------------------------------------
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---------------------------
>reverse_3134
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-------------CTGCGAAGTGACAAATATGGGA---------------------------------------------
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---------------------------
