>input_sequence_40635
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------ATGGGGAAG
AACCAGGCGTACAAGGCGATGCAGCGGGCGCGGCTGGGCTCGTCCTCCGGCGCCCC-CGGCGAAGGGGAGGAAGACGGCA
TGGTCGGTCCCCTTCCTCGCC-CCCCTTACCACAGATCCTTAATCC----------CCCCTAGTTCCAAGCTCGCAAC--
-CCATCTCTGATTGCT-CCCCCCGTGCAAACCCTATCGAGATCTGCCGGGACGTCCATGGCGAATCTTGCTGCTTGTAGA
TGCTTTTTCC-CCCTTTTG---ATGAGGGGACTTTTACTAACGAGGGCCGTCACAGACGGACGGTTCATTTCATTCTCCA
GAGTGGCACGCGGCGCGCTTGGCCAGCCTCAACAAGACCCACACCCTCACGTGGGAGGAGTTCAAGAAGAAGCAGAAGGT
ATGCGCGG----CCTCGGCTTGCTCTCTGCTGGC-TTTGTTGGTGGATTTTAGTTTCTGCACTCTGTAATTTTGG-----
----CCATGATTTTATCCATGCTGCT--------GCTTAAGCTCTGCGATGTGCTATTTGTGCTCCTATTTTATGTTA--
AATGTATGATGGATGCTGAATTTCAGGCATACTGCCTTGTATGTGATGCCCAAGTTTGTTTTGGCCTGGTGTGGGATGGC
GATTCACTTTGTAGTGCATATAGTAACGAATTAAGCTACGTTGTAGCATAGGAGGGAAATTAGCAGCCTGAACTTTGGCA
GTGGAAGCTTGGTCCTGTGCCACCCAGGGTCCAGTCGTCCTTCCCCTGGTTTGCTGACCTTTGAGTTTCTCTAGCATCGG
TTTGCCATCAGACATTTAGACTTGTGCTACTGTAAAAGGTAGTACAACCATTTATCAGTGGCACACCGCTTATT-CAGCC
ATCCACGATACTTTACCTAGTTAGCTTGAAAAACGATCTTATATTTTACTCCCTCCGTCCCACAATATAAGATCGTAGCT
TGAAAAATGATCTTACATTGTGGGATGGAGGGAGTGCTTGGTTTTGATTCCTTTACTTATCTTGTTCTCTTTGATAAATA
GCAACTTAGACGGAGTATGTATATGCTGATTCCAAATAGATCAACCTA-TGTCCGCATTAGTTGGGGTGG-GTTTACTTG
GCAAACGCTTTATTGTTTTCTGCATTGACTCCACATGGTTATTGGCTTACTAGTTAGTGTACTGCTGATGAGGCTCAGCC
TTTTTGTACT--TATAAGGTCACTGTGTAGCTATAATACTTATCTGTTATCAGTACCTTCATAGTAATCAATGATGCTCT
TGTCCCCTATAGGACGAGGAACTAAAGAGAGGTGAGGTGGAGGCTGACAAAGATAAAATGATGAGAGAGTATAGAGCTCA
ACTGGATGCTGAAAGGGCCCAAAAGCTTGGTCGTGGAAGAGACGTCGTAAAGTCAAAATCATCATCTTCCAAGAAAGGTA
AATCAACTTAATGACGTGCTGAACGATGTTTCTTACATTTAGGTCCCATTAGGTGA-ACTCTTTCTTAAATCTATTCCAT
GTGTTGAGTTTTCTGACAAAGAATTATGGATACAGAAAAGAAGGAAAAGGACGCAAAGAAACGGATTAAAAAGAGGAGGA
AGGTATTGCTCTCAAATACAAATGTAATAATTGGCCACATTATGATGAATGGAAAACACCAAAAA-TATCCGCTATATAA
ATGACTCTAGATATAAACATT-TTTTTACCTTCTCCTGTTGGGATGAATTTGGGAAACAAAAATGGTCCTACTTGCTCAC
TTCTGCATTCTTACAGCACAGAAGTTCGTCAGAAAGTTCCAGCTCATCAGAATCATCAAGTAGTGATGATGAGGACAGGG
GTTCAAGAAAATCCCGATCCCGATCAAGATCAAAGCGAAGTAAGAAAGATAAGAAGCACAGGTCCCGATCCAAGCATGCC
GGAAGTGACAGCGAGGAGGAAGGCCCTGTTCGCCTCTCGAAATTCTTTGGGAATGCAAAGAACTAG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr2D_1_TraesCS2D01G350900
TGTATGCATCTTCATAGTGATCCTGGGAACTTGATTTGTAGGCCAATTTCTTTGTTTTGTTTTCTATTACATTTCTCAAC
AACAACTTCACATTGAAGTTGTCCGGCGGGAGGAAGAGGGGAGGGGGAGGTGATCCAACAAACTCAGCTATATCGGGTTG
GGTGAGTGTGTAGTAGGTTTGCTCCGATCTCATGACATCTCGATGTATTTTTCTTCCTAAATGAATTTTCCACCTCCTTG
ACGACTAGAACTGATAGTCTAAAGTTAATGTCGTTCAA----ATTAATTTACTCGGATCATAACCCATGTCTTGAGCTCA
CACCACGATCCA-----------TCTTTTCTGTTGTCATCAATGACAGTTCTTCCATGACACAATTCCTCGACCAGCAAA
CTTTAATTCATACAAAGCAATATTTTCTTTTGTTGCAACACACATACATTTATGCTAGTATAAACAAAGAAGAGATGCAC
CCTTGCTCAATCCGGCCCAAGGAAATATGATGTGCTACCAGCGTTTAGGTGATACCGTGATATGGACTCTTGGCAGCCGT
TGGATCTCAAATCAAACGGCTTTCGGAAGCTCTTGAACATT-TAC--AAAAAAGTGATCTAAGAGTCTCGACATTGCGTG
CAGGTACAACAACTCTTAAGATGCCGTCGGATCTGTGATCCAACGGTCCAAATGTCCGTATAACGGTAGCATATGAAGAC
CGATATCACCTGAAACTTTGGCAATCCGGCCATCCAGTTCCGATCAGACGGTAGACACGCGGCCGCAGCAGCAGCCTGCG
GAGGCAGAGTTCCTCCCTCAGGCCAGAGCCAGAGGAGGGGAGGCCTTCCCCTTGCCC------CATCTTCTCCTTTACCT
TATCGGCGTTATCGCCATCACCCGTCATAACTCGCGGCCGCACGCGTCGTACCAA-AGGAGGGAGGAAAAAGGGATCTCC
ACTCCACTCGGCCTCCTCC------TCCGCCCCGCGCGGTTCCAATCTGGTTCCCGGGCCAGCAATCGACGATGGGGAAG
AACCAGGCGTACAAGGCGATGCAGCGGGCGCGGCTGGGCTCGTCCTCCGGCGCCCC-CGGCGAAGGGGAGGAAGACGGCA
TGGTCGGTCCCCTTCCTCGCC-CCCCTTACCACAGATCCTTAATCC----------CCCCTAGTTCCAAGCTCGCAAC--
-CCATCTCTGATTGCT-CCCCCCGTGCAAACCCTATCGAGATCTGCCGGGACGTCCATGGCGAATCTTGCTGCTTGTAGA
TGCTTTTTCC-CCCTTTTG---ATGAGGGGACTTTTACTAACGAGGGCCGTCACAGACGGACGGTTCATTTCATTCTCCA
GAGTGGCACGCGGCGCGCTTGGCCAGCCTCAACAAGACCCACACCCTCACGTGGGAGGAGTTCAAGAAGAAGCAGAAGGT
ATGCGCGG----CCTCGGCTTGCTCTCTGCTGGC-TTTGTTGGTGGATTTTAGTTTCTGCACTCTGTAATTTTGG-----
----CCATGATTTTATCCATGCTGCT--------GCTTAAGCTCTGCGATGTGCTATTTGTGCTCCTATTTTATGTTA--
AATGTATGATGGATGCTGAATTTCAGGCATACTGCCTTGTATGTGATGCCCAAGTTTGTTTTGGCCTGGTGTGGGATGGC
GATTCACTTTGTAGTGCATATAGTAACGAATTAAGCTACGTTGTAGCATAGGAGGGAAATTAGCAGCCTGAACTTTGGCA
GTGGAAGCTTGGTCCTGTGCCACCCAGGGTCCAGTCGTCCTTCCCCTGGTTTGCTGACCTTTGAGTTTCTCTAGCATCGG
TTTGCCATCAGACATTTAGACTTGTGCTACTGTAAAAGGTAGTACAACCATTTATCAGTGGCACACCGCTTATT-CAGCC
ATCCACGATACTTTACCTAGTTAGCTTGAAAAACGATCTTATATTTTACTCCCTCCGTCCCACAATATAAGATCGTAGCT
TGAAAAATGATCTTACATTGTGGGATGGAGGGAGTGCTTGGTTTTGATTCCTTTACTTATCTTGTTCTCTTTGATAAATA
GCAACTTAGACGGAGTATGTATATGCTGATTCCAAATAGATCAACCTA-TGTCCGCATTAGTTGGGGTGG-GTTTACTTG
GCAAACGCTTTATTGTTTTCTGCATTGACTCCACATGGTTATTGGCTTACTAGTTAGTGTACTGCTGATGAGGCTCAGCC
TTTTTGTACT--TATAAGGTCACTGTGTAGCTATAATACTTATCTGTTATCAGTACCTTCATAGTAATCAATGATGCTCT
TGTCCCCTATAGGACGAGGAACTAAAGAGAGGTGAGGTGGAGGCTGACAAAGATAAAATGATGAGAGAGTATAGAGCTCA
ACTGGATGCTGAAAGGGCCCAAAAGCTTGGTCGTGGAAGAGACGTCGTAAAGTCAAAATCATCATCTTCCAAGAAAGGTA
AATCAACTTAATGACGTGCTGAACGATGTTTCTTACATTTAGGTCCCATTAGGTGA-ACTCTTTCTTAAATCTATTCCAT
GTGTTGAGTTTTCTGACAAAGAATTATGGATACAGAAAAGAAGGAAAAGGACGCAAAGAAACGGATTAAAAAGAGGAGGA
AGGTATTGCTCTCAAATACAAATGTAATAATTGGCCACATTATGATGAATGGAAAACACCAAAAA-TATCCGCTATATAA
ATGACTCTAGATATAAACATT-TTTTTACCTTCTCCTGTTGGGATGAATTTGGGAAACAAAAATGGTCCTACTTGCTCAC
TTCTGCATTCTTACAGCACAGAAGTTCGTCAGAAAGTTCCAGCTCATCAGAATCATCAAGTAGTGATGATGAGGACAGGG
GTTCAAGAAAATCCCGATCCCGATCAAGATCAAAGCGAAGTAAGAAAGATAAGAAGCACAGGTCCCGATCCAAGCATGCC
GGAAGTGACAGCGAGGAGGAAGGCCCTGTTCGCCTCTCGAAATTCTTTGGGAATGCAAAGAACTAGATGCTATATCGATA
CGCCCAATACCAATTTGCTTGCTCCTGAGGTCATATCATTTTGAATCGTCAATTGGTGGGTGTTGATTGTATTCTATTGA
GATGACTCTCAGAAGGTTGTGGGAACCAGTTTCTGTGTTGTT---TCTCAACAGAATGTTTGGTAACTGGAGGTTTAGGT
GTTGAACCATTATATGGTATCCTGCAACTTGTAAGAAATGTCAAATCATTGTTACATTGTTGTACTTGATGGATAGTGAC
AGTATTCATATTCGATTTGAACTGCTTTAATTCTTT-CAGAACTTGATATTTAAATTATTATCTTTCTTTGGCTGATCTT
TAGATCTA--TTATGAGAATCGGCTTCTCTGTTGGTGTATTTGCTGTGAGCTATGAAAAATACAGTCCCCTCCGTCTCTA
TGTTTGATTAAATTCACTG-AAAAATATATTAACATG--TACAATACCAAATAAGTAAAATATGAATATGTATATATCAT
AATGAAGCTGATGATATTGATTTGGTATTTGTGGATAAGCTTGGTCAAACAGAGAGTAGCTTGACTTCTAAAATAGTGAT
CTAAACAGAGTACCTTGCTACCAATTGGCAGCTTTAGTACAACCTGAGGGAGTACTGCAAATTTTACCTTTCCCGGGTGT
TCAATCTTTAGGCCTCATTCGGTTAAGGGGGAACCCAAACCTAAGAATTAGGAGTAGTATAGAAATTTGATAAGATGGCA
CTTGCCATTCTAAGGAATTGTCTTTGTATTGTTCCTACGCAAAAATAAGCTTTGAGTGAAGGTGTAGATTCCTTCAAAAA
CACAAAAAATGAGTAGTATTCTTACGAAATTCCTGTACAAATTTTCCTCTAAAATTCTTGTTTCTATGTTTTCCTATTAA
AATCCTCCAAACCGGATGAAGCCTTAAAAGACCAGGTGAAGGATTTGTAACGCCTTCTACTTACTCCCTTCGATCTATAT
TAATTGTCGTTTCTCAAAAAAAATCTATATTAATT
>chr2B_1
TGTATGCATCTTCATAGTGATCCTGGGAACTTAATTTGTAAGGCAA-TTTTTGGTTTTGTTTTCTATC----TTCTCAAC
AACAACTTCACATTGAAGTCGTCGGGCGGGAGGAAGAGGGGAGGGGGAGGTGATCTAACGAACTCAGCTATATC-GGTTG
GGTGAGTGTGTAGTATGTTTGCTCCGATCTCAAGCCATCTCAATGTATTTTTCTTCATAAATGAATTTGCCGCCTCCTTG
ACCATTAGAACTGATAGTCTAAAGTCAATGTTGTTCAACCAAATTAATTTACTCGGATCATAACCCATGTCTTGAGCTCA
CACCACGATCCTCAAGTGATCCGTCTTTTCTTTTGTCATCAACGACCGTTCTTCCATGACACAATTCCTCGACCAACAAA
CTTTAACTCATACAAAGCAATGTTTTCTTTTGTTGCAACACACAAACATTTATGCTAGTATAAACAAAGAAGAGATGCGT
CCTTGCTCAATCTGGCC------------------------CGTTTAGGTGATACCGTGATACAGGCTCTTGACAACCGT
TGGATCTCAGATCAAACGGCTCCCGGGAGCTCTTGGACATTTTAC--AAAAAAATCATTCAAGAGTCTTGAAATTGTGTG
CAGGTATAACAACTCCTCAGGTGCCGTCGGATCTGAGATCCAACGGTCCAGACGTGTGTATCATGGTAGCATACGAAGGC
CGGTATCACCTGAAACTTTCCCATCCA-GCCGTCCAGTTCCGATCAGACGGTAGACATGCGGCCGCAGCAGCAGCCCGCG
GGCGGAGAGTTCCTCCCACAGGGCAGAGCCAGAGGAGGGGAGGCCTT--CCTTCCCC------CATCTTCTCCTTTACCT
TATCGGCGTTATCGCCATCACCCGTCATAACTCGCGGCCGCACGCGTCGTACCAA-AGGAGGGAGGAAAAAGGGATCTCC
ACTCCACTCCGCCTCCTCC------TCCGCCCCGCGCGGTTCCAATCTGGTTCCCGGCCGAGCAATCGAGGATGGGGAAG
AACCAGGCGTACAAGGCGATGCAGCGGGCGCGGCTGGGCTCGTCCTCCGGTGCCCC-CGGCGAAGGGGAGGAAGACGGCA
TGGTCGGTCCCCTTCCTCACC-CCCCTTACCACAGATCCTTAATCC----------CCCCTAGTTCCAAGCTCGCAAC--
-CCATCTCTGATTGCTCCCCCCCGTGCAAACCCTATCGAGATCTGCCGGAACGGCCATGGCGAATCTTGCTGTTTGTAGA
TGCTTTTTCC--CCTTTTG---ACGAGGGAACTTTTACTAACGAGGGCCGTCACAGACGGACGGTTCATTTCATTCTCCA
GAGTGGCACGCGGCGCGCTTGGCCAGCCTCAACAAGACCCACACCCTCACGTGGGAGGAGTTCAAGAAGAAGCAGAAGGT
ATGCGCGG----CCTGGACTTGCTCTCTGCTGGC-TTTGTTGGTGGATTT-AGTTTCTGCACTCTATAATTTTGG-----
----CCATGATTTTATTCATGCTGCT--------GCTTAAGCTCTGCGATGTGCTATTTGTGCTCCTATTTTATGTTA--
AATGTATGATGTATGCTGAATTTCAGGCATACTGCCTTGTATGTGATGCCCAAGTTTGTTTTAGCCTGGTGTGGAACGGC
GATTCACTTTATAGTGCATATAGTAACGAATTAAGCTACGTTGTAGCATTTGAGGGGAATTAGCAGCCTGAACTTTGGCA
GTGGAAGCTTGGTCCTGTGCCACCCAGGGTCCAGTTGTCCTTCCCCTGGTTTGCTGACCTTTGAGTTTCTCTAGCACCGG
TTTGCCATCAGACATTTAGACTTGTGCTACTGTAAAAGGTAGTACAACCATTTAGTGG-----CACCGCTTATTGCAGAC
ATCCATCATACTTTACCTAGCTTCAGAAGTCTAATGATGCCATTTGCTTGGCTTC-------------------------
---------------------------------------------GATTCCTTTACTTGTCTTGTTATCTTTGATAAATA
GCATCTTAGGCGGAGTATGTATATGCTGATTCCAAACAGATCAACCTACGGTCAGCATTAGTTGGGTTGGCGTTTACTTG
GCAAATG-TTTATTGTTTTCTGCATTGATTCCACACGGTTATTGGCTT------------ACTGCAGACCAGCCTAAGCC
TTTTTGTACTTATATAAGGTCACTGTGTAGCC---ATAGTTATCTATTATCAGTACCTCCATAGTCATAAATGATGCTCT
TGTCCCCTATAGGACGAGGAACTAAAGAGAGGTGAGGTGGAGGCTGACAAAGATAAAATGATGAGAGAGTATAGAGCTCA
ACTGGATGCTGAAAGGGCCCAAAAGCTTGGCCGTGGAAGAGACGTTGTAAAGTCAAAATCATCATCTTCCAAGAAAGGTA
AATCAACTTAATAACATGCTGAACGATGTTTCTTACATTTAGGTCCCATTAGGTGAAACTCTTTCTTAAATCTGTTCCAT
GTGTTGAGTTTTCTGACAAAGGATTATGGATACAGAAAAGAAGGAAAAGGACGCAAAGAAACGGATTAAAAAGAGGAGGA
AGGTATTACTCTCAAATACAAATGTAATAATTGGCCACATTATGATGAATGGAGAACACCAAAAAGTATCCGCTATATAG
ATGATTCTAGATATAAGCATT-TTTTTACCTTCTGCTGTTGGGATGAATTTGGGAAACAAAAATGGTCCTACTTGCTCAC
TTCTGCATTCTTACAGCACAGAAGTTCGTCAGAAAGTTCCAGCTCATCAGAATCATCAAGTAGTGATGATGAGGACAGGG
GTTCAAGAAAATCCCGATCCCGATCAAGATCAAAGCGAAGTAAGAAAGATAAGAAGCACAGGTCCCGATCCAAGCATGCC
GGAAGTGACAGCGAGGAGGAAGGCCCTGTTCGCCTCTCGAAATTCTTTGGGAATGCAAAGAATTAGACGCTATATCGATA
CGCCCAATACCAATTTGCTTGCTCCTGAGGTCATATCATTTTGAATTGTCAATTGGTGGGTGTTGATTGTATTCTATCGA
GACAACTGTCAGAAGGTTGTGGGAACCAGTTTCCA---TGTT---TCTCAACAGAATGTTTGGTAATTGGAGGTTTAGGT
GTTGAACCATTATATGGTATCCTGCAACTTGTAAGAAATATCAAATCATTGTTACATTGTTGTACTTGATGGATAGTGAC
AGTACTCATATTCGATTTGAACTGCTTTAATTCTTTTCAGAACTTGATATTTAA-TTATTATCTTCCTTTGGCTGATCTT
TAGATCTCCTTTATGAGAATTGGCTACTCTGTTGGTGTATTTGCTATGAGCTATGAAAAATACAGCCCCCTCCGTCTCTA
TGATTAAATTG------ACAGAAAATATATTAACATGTATACAATACCAAATAAGTAAAATATGAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr2A_1
TGTATGGATCTTCACAGTGATCCTGGGAACTTAATTTGTAGGGTAATTTTTTTGTTTTGTTTTCTATTATGTTTATCAAC
AACAACTTCACATTAAAGTCATCGGACGGGAGGAAGAGGGGA-GGGGAGGTGATCCAACGAACTCAACTATATCGGGTTG
GGTGAGTGTGTAGTACGTTTGCTCCGATCTCATGCCATCTCAATGTATTTTTCTTCCTAAATGAATTTGACACCTCCTTG
ACCATTAGAACTGACAATCTAAAGTTAATGTTATTCAACCAAATTAATTTACTCGGGTCATAACCCATGTCTTGAGCTCA
CACCACGATCCTCAAATG--------------------------------------------------TCAACCAACAAA
CTTTAATTCATACGAAGTAATGTTTTCTTTTGTTGCAACACACGTACATTTATGCTAATATAAACAAAGAAGAGATGCGC
CCTTGCTCAATCCGACCTGGGGAAATATCATGTGCTACCAACGTTTAGGTGATACCGTGATACGGGCTCTTGGTAA-CGT
TGGATATCAGATCAAACGGCTCCTATGAGCTATTAAACATT-TTACAAAAAAAATCATCGAAGAATCTTGAAATTGCGTG
CAGGTACAACAACTCCTTATATGCCGTCGGATCTGAGATCCAACGGTTCAGACGTCCGTATCATGGTAGCATATGAAGAC
CGGT------------------ATCCA-GCCATCCAGTTCCGATCAGACGGTAGACACGCGGCCGCAGCAGCAGCCCGCG
GGCGGAGAGTTCCTCCCACAGGCCAGAGCCAGAGGAGGGGAGGCCTT--CCTTCCCCTTCCCCCATCTTCTCCTTTACCT
TATCGGCGTCATCGCCATCACCCGTCATAACTCGCGGCCGCACGCGTCGTACCAAAAGGAGGGAGGAAAAAGGGATCTCC
ACTCCACTCCGCCTCCCCC------TCCGCCCCGCACGGTTCCAATCTGGTTCTCGGCCCAGCAATCGAGGATGGGGAAG
AACCAGGCGTACAAGGCGATGCAGCGGGCGCGGCTGGGCTCGTCCTCCGGCGCCCC-CGGCGAAGGGGAGGAAGACGGCA
TGGTCGGTCCCCTTCCTCACC-CCCCTTACCACAGATCCTTAATCC----------CCCCTAGTTCCAAGCTCGCAGCAA
TCCATATCTGATTGCT-CCGCCC--GCAAACCCTATCTAGATCTGCCGGGACGTCCATGGCGAATCTTGCTGCTTGTAGA
TGCTTTCTTT-TCCTTTTGATGATGAGGGGACTTTTACTAACGAGGGCCGTCACAGACGGACGGTTCATTTCATTCTCCA
GAGTGGCACGCGGCGCGCTTGGCCAGCCTCAACAAGACCCACACCCTCACGTGGGAGGAGTTCAAGAAGAAGCAGAAGGT
ATGCGCGG----CCTCGGCTTGCTCTCTGCTGGCTTTTGTTGGTGGATTT-AGTTTCTTCGCTCTGTAATTTTGG-----
----CCATGATTTTATCCATGCTGCT--------GCTTAAGCTCTGCGATGTGCTATTTGTGCTCCTATTTTATGTTA--
AATGTATGATGGAAGCTGAATTTCAGGCATACTGCCTTGTATGTGATGCCCAAGTTTGTTTTGGCCTGGTGTGGAATGGC
GATTGACTTTATAGTGCATATAGCAACGAATTAAGCTACGTTGTAGCATAGGAGGGAAATTAGCAGCCTGAACTTTGGCA
GTGGAAGCTTGGTCCTGTGCCACCCAGGGTCTAGTCGTCCTTCCTCTGGTTTGCTGACCTTTGAGTTTCTCTAGCATCGG
TTTGCCATCAGACA-TTAGACTCGTGCTACCGTAAAAGGTAGTACAACCATTTGTCAGTGGCACACCCATTATTGCAGCC
ATCCACGATAGTTTACCTAGCTTCAGAAGTCTAATGATGCCATTTACTTGGTTTTCA-----------------------
------------------------------------------------------------CTTGTTCTCTTTGATAAATA
GCAACTTAGACGGAGTATGTATATGCTGATTCCAAACAGATCAACCTA-GGTCCGCATTAGGCGGGGTGGGGTTTACTTG
GCAAA-GCTTTATTGTTTTCTGCATTGACTCCACATGGTTATTGGCTTACTAGTTAGC--ACTATAGATCAGGCTCAGCC
TTTTTGTACT--TATAAGGTCACTGTGTGGCTATAATAGTTATCTATTATCAGTACCTTCATAGTAATTAATGATGCTCT
TGTCCCCTATAGGACGAGGAGCTAAAGAGAGGTGAGGTGGAGGCTGACAAAGATAAAATGATGAGAGAGTATAGAGCTCA
ACTGGATGCTGAAAGGGCCCAAAAGCTTGGTCGTGGAAGAGACGTTGTAAAGTCAAAATCATCATCTTCCAAGAAAGGTA
AATCAACTTAATGACGTGCTGAACGATGTTTGTTACATTTAGGTCCCAGTAGGTGA-ACTCTTTCTTAAATCTATCCCAT
GTGTTGAG-TTTCTGACAAAGAATTATGGATACAGAAAAGAAGGAAAAGGACGCAAAGAAACGGATTAAAAAGAGGAGGA
AGGTATTACTCTCAAATACAAATGTAATAATTGGCCACATCATGATGAATGGAAAACACCAAAAAGTATCCGCTATATAA
ATGATTCTAGATATAAGCATTTTTTTTACCTTCTCCTGTTGGGATGAATTTGGGAAACAAAAATGGTCCTACTTGCTCAC
TTCTGCATTCTTACAGCACAGAAGTTCGTCAGAAAGTTCCAGCTCATCAGAATCATCAAGTAGTGATGATGAGGACAGGG
GTTCAAGAAAATCCCGATCCCGATCAAGATCAAAGCGAAGTAAGAAAGATAAGAAGCACAGGTCCCGATCCAAGCATGCG
GGAAGTGACAGCGAGGAGGAAGGCCCTGTTCGCCTCTCGAAATTCTTTGGGAATGCAAAGAATTAGATGCTATATCGATA
CGCCCAATACCAATTTGCTTGCACCTGAGGTCATATCATTTTGAATCGTCAATTGGTGGGTGTTGATTGTATTCTATTGA
GACGACTCTCAGAAGGTTGTGGGAACCAGTTTCCA---TGTTGTTTCTCAACAGAATGTTCGGTAACTGGAGGTTTAGGT
GTTGAACCATTATATGGTATCCTGCAACTTGTAAGAAATATCAAATCATTGTTACATTGTTGTACTTGATGGATAGTGAC
AGTATTTATATTCGATTTGAACTGCTTTAATTCTTTTCAGAACTTGATATTTA---TATTATTTATCTTTGGTTGATCTT
TAGATCTCTTTTATGAGAATTGGCTTCTCTGTTGGTGTATTTGCTGTGAGCTATGAAAAATACAGTCCCCTCCGTCTCTA
TGTTTGATTAAATTCACACAAAAAAAATATTAACACGTA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>chr3D_915
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AGGGAGGAAAAAGAGATCTCC
ACTCCACTCTGCCTCCCCCTCTCCCTCCGCCCCGCGCGGTTCCAATCTGGTTCCCGGGCCAGGAATCGAGGATGGGGAAG
AACCAGGCGTACAAGGCGATGCAGTGGGCGCGGCTGGGTTCGTCCTCCGGCGCCTCTCGGCGAAGGGGAGGAAGACGGCA
TGGTCAGGCCCCTTCCTCACCTCCCCTCACCACAGATACTTAATCTCGCGTCACCACCCTTACTTCCAAGCTCA---CAA
TCCACCTCTGATTGTT-CCCCCC--GCAAATCCTATTAAGATCTTCCGGAACGTCCATGTCGAATCTTGCTGTTTGTAGG
TGCTATTCTTTCCCTTCTG---ATGAGGGGACTTTTACTAACGAGGGCCGTCACAGCCGGACGGTTCATTTCATTCTCCA
GAGTGGCACGCGGTGCGCTTGGTCAGCCTCAACAAGACCCATACCCTCACGTGGGAAGAGTTC---AAGAAGGAGAAGGT
ATGTGCGGCGGCCCTCGACTCGCTCTCTGCTGGC-TTTCTTGGTGGATTT-AGTTTCTTCACTCTGTAATTTTGTGTGTC
CTATCCACGGTTTTATCCATGCTGCTGCACTGCTGCTTAAGCTCTGCGATGTGTTATTTGTGCTCCTATTTTATACTATT
AATGTATGATGGATGCTGAATTTCAAGCATACTGCCTTGTATGTGATG--------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>SNPs
--------------------------------S---------S------S-------------------SS---------
-------------------S---S-----------------------------------S--------------------
---------------S------------------S------S--------------------------S-----------
--S-S--------------------------S------------------------------------------------
-----------S-------------------S----------S---S----------------------------S----
---------------------S--------------------------------------------------------S-
-----------------SSS--------S-----------S---------------------S--S---------S----
---------S-----------SS---S--------------------------S-S---S--------S--S--------
---------------S-S-----------------S--------------S-S--------S-S----------------
--S----------------SS--SS-SS------------------------------------------------S---
-SS-S------------S-----------------------------SS----S--------------------------
--------------------------------------------------------------------------------
---------S-----------------------------------------------------------S----------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-SSSSSSSSSS-SSSSSSSSSS--SSSSSS-S---SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S---------------------
------------------------------------S------------S------------------------------
-----S---------------------------------------------------SSS-----S---S----------
--------------------------------------S------S----------------------S-----------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
----S-----------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--S------------------------------SSSSS------------------------------------------
---------------------------------------S----------------------------------------
------------------------------------------------------S-------------------------
-------S------------S-----------------------------------------------------------
-----------------SS-----------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_970
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AGGGATCTCC
ACTCCACTCG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_1967
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TACTCCCTCCGTCCCACAAT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>forward_1691
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTGGGATGGC
GATTCACTTTG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
>reverse_3691
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------GGCCTCATTCGGTTAAGGGG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------
