>input_sequence_40614
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---------ATGAGCCGTTTCCTCCGAGCAACCGATTCTCGTCGATGCCACCGGCAGCGCCGCCGCCTCCTTTCCGTCGT
CGCTGGCGGCGACCAACCGATCCGCGACCTCCCGCCGACCACCTGCGCGATCCCATGGAACCGCCTCCTCCGCGCCCACA
TCTGCCGCTCCCGTCCAGACCTTGCGCTCGTGCTCTACCGCCGCATGCGCGCGCTCTGCCCCACGCTCCCCAACACCTAC
ACGCTCCCCCTCGCCCTCCGCGCGGCGACCTCCCCACGAATCGCGTCCGCCCTCCACGCACACGCCCTCCACCTTGGCCT
GCACGCCCACCCGGACGTCGCCGGCCAGCTCCTCGCCGCCTACGCCAGGCACGGCCGCGCCGACGAGGCCCGCCACGTGT
TCGACGCAATGCCGTCGAAGGGGACCACCATGTCCTGGAACACGCTCATCTCCGCGTACTCGGTCTGCTGCGACCCCGAC
AGTGCAATGGCCACGTTCTGGCGCATGGCCGCC---GCCAACGAGGCGCTCCCCGACGCCGTGACGTGGACGACGCTGCT
CTCGGCGCACGCGAGGTGCGGTAAGCATCCGGTGGTTCTTGAACTGTTTGGAGACATGCACCGCAGCGGATGCGAAGGGA
ACGCCGAGTCTGTGGCCGTGGCGCTCTCGGCGTGCCCTTACGCCGGCGACCTCTCATTGGGGAAAGGGAGGGCTATACAT
GGCTACGGCGTCGCGAAGGGCGTCGTCCGTGGCTACCTGTTCGTCACCAACTCGCTGGTGTGCATGTACGGCAAGCTGGG
GAAGATGGACGACGCCCGGGAGGTTTTCCGGGAAGCCAGGGAGAGGAACACCGTGACATGGAACGCCCTCATCACCAGCT
ACGCTGCTGCTGGGATGTGCGACGAAGCGTTGGACGTGCTCGTCCGGATGGAGCAGCGTGGCGGCATGGTTGCTCCCAAT
GTGGTGAGCTGGAGCGCTGTCATCGGCGGCTTCGCGTCGTCCGGGGACAATGAGCGCGCACTGGAGCTGTTCCGGCGGAT
GCAACAGCAATGGCTTTCGCCAAACGTGGTGACCTTAGCTACCGTTCTCTCAGCCTGCGCCGAGCTGCTGGCGGTGCGGC
TGGGTCGGGAGGTCCATGCCGACGCGATCAGATCCATGGTTGACCGGCACTTGCTCGTCGCGAACGGGCTCATCAACATG
TACGCCAAGTGCGGGAGAGTCGCCTACGCACGCACGGTGTTCGACAGTATGAAGAGCAGGGACCTGGTCTCCTGGAACTC
TATGTTGGCCGGCTATGGGATGCACGGCCTGTGCGACGACGCCCTGGCAGTGTTCACAGACATGGCAGAAGCTAAGGTCG
ATCCTGACGGTGTCACCTTCGTCGCCGTTCTGTCGGCGTGCAGCCATGCAGGGCGCGTGTGGGAGGGCCGCCGGCTGTTT
GATCAGATGATGCGGGAGCACAAGATTACCCCGTCCATGGAGCTCTACACGTGCATGGTCGACCTCCTGGGGCGTGCCGG
CTTGCTCAAGGACGCGTCTGAGCTCATCGAGACGATGCCGGTGGGAGCCGACCTGTGCGTTTGGGGAGCGCTGCTCAACT
CCTGCAGGATCCATGGGGACGCAGCCATGGCCGAAGCCACCATCGCGAAGGTTCTGCAGGCGGGCGCGGAGACCACCGGC
AACCACACGCTGATCACGAACCTGTACGCCGCGTGCGGGATGTGGGACGACTCCAAGAGGGTGAGGGTGATGACGAGAGA
GGCCGGCTTGAGGAAGAGCCCGGGGCAGAGCTGGATCGAGGTGAAGAACAAGGTGTTCGCCTTCGTGGCCGGCAGTGTGC
CCCCGTCAATGCCCAGAGCTGAGGAGATCTTCAGGGTGCTCGACGATTTGTACAGCGCAATGGACGACGAGAGACGTACC
ATGGAGGACGATCATCACATTGTAAGCGTTCGATAG--------------------------------------------
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>chr3B_1_TraesCS3B01G161300
GGCAGGCAGGGAGGCTGGTGGCGTGGCGCGGCGGAGCGCGCGCGCGTCGGGCACGCGCCCA-CCCC-CTGTCGAGGACGA
AGACGACAGAGGAGGGGG-CCAG-TGGGCTGGGCCGGCGCTGGCTGCTGGGCCGGCCAGGCCGCACAGGAGCTGGGCCGC
AGGTAAGTTTCTCCTTTTTATTTC----TTTTCTAATTTTTCTGACATATGTTTTGATTTAATTAAAATACTAAATCATT
TTATCACCTTATGCCA-TTTTTGCAAGAGCTAACTATATTATTCCAGAGCTCCTTAATAAATGGCATAGTTTTTGGACCA
TATTATAT--ATATATAACA----ATATATATCCAGGGCAAATAATTATCGGATTAATTCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTAGAATTTTACTTCTGATCAATATTTTCAGAGAGCAACATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGATTTCACAAATCCTCATTTCAAAATTAAATG
AAATTTAAACATGATGCACAAATGACTAGCTAGCCTAGGTCATACCAGACTAGGGATGTGACACAATTTCTCTAATGAAT
GATACGCATGCTTGTGTGTATTCGAGAAAAAAAAAGTTGAGGCAATTGAGACAGTGATCGCTGGAGGCAGATCTTTGGGT
GTAGCTGCAGCAATCTTCCCACAATTGTTATCACCTCGTTTGTGAATTCCCGCAAACTATCTTGGACATTGTTATAAAGA
AGCAAATTCTGTTGCGCATGAATTGGCCACAAATGGCTAGGTCTGGATTTTGTAGTACTAGTACTAGGTTTGAAGAGGTT
CCAAGTGAACTGATCGCTCTATTGATTCAAGAAT------------------------GTAACTGTTGTCACAAGCTAAT
AA--AGGGGTGAC--ATGA---TAAAAAAAACAAGAAAGCTTCCCAGATGGGCGTTTTGCTACGCCGACTGGTGGGACCC
AG-TGCCAGATGAGCCGTTTCCTCCGAGCAACCGATTCTCGTCGATGCCACCGGCAGCGCCGCCGCCTCCTTTCCGTCGT
CGCTGGCGGCGACCAACCGATCCGCGACCTCCCGCCGACCACCTGCGCGATCCCATGGAACCGCCTCCTCCGCGCCCACA
TCTGCCGCTCCCGTCCAGACCTTGCGCTCGTGCTCTACCGCCGCATGCGCGCGCTCTGCCCCACGCTCCCCAACACCTAC
ACGCTCCCCCTCGCCCTCCGCGCGGCGACCTCCCCACGAATCGCGTCCGCCCTCCACGCACACGCCCTCCACCTTGGCCT
GCACGCCCACCCGGACGTCGCCGGCCAGCTCCTCGCCGCCTACGCCAGGCACGGCCGCGCCGACGAGGCCCGCCACGTGT
TCGACGCAATGCCGTCGAAGGGGACCACCATGTCCTGGAACACGCTCATCTCCGCGTACTCGGTCTGCTGCGACCCCGAC
AGTGCAATGGCCACGTTCTGGCGCATGGCCGCC---GCCAACGAGGCGCTCCCCGACGCCGTGACGTGGACGACGCTGCT
CTCGGCGCACGCGAGGTGCGGTAAGCATCCGGTGGTTCTTGAACTGTTTGGAGACATGCACCGCAGCGGATGCGAAGGGA
ACGCCGAGTCTGTGGCCGTGGCGCTCTCGGCGTGCCCTTACGCCGGCGACCTCTCATTGGGGAAAGGGAGGGCTATACAT
GGCTACGGCGTCGCGAAGGGCGTCGTCCGTGGCTACCTGTTCGTCACCAACTCGCTGGTGTGCATGTACGGCAAGCTGGG
GAAGATGGACGACGCCCGGGAGGTTTTCCGGGAAGCCAGGGAGAGGAACACCGTGACATGGAACGCCCTCATCACCAGCT
ACGCTGCTGCTGGGATGTGCGACGAAGCGTTGGACGTGCTCGTCCGGATGGAGCAGCGTGGCGGCATGGTTGCTCCCAAT
GTGGTGAGCTGGAGCGCTGTCATCGGCGGCTTCGCGTCGTCCGGGGACAATGAGCGCGCACTGGAGCTGTTCCGGCGGAT
GCAACAGCAATGGCTTTCGCCAAACGTGGTGACCTTAGCTACCGTTCTCTCAGCCTGCGCCGAGCTGCTGGCGGTGCGGC
TGGGTCGGGAGGTCCATGCCGACGCGATCAGATCCATGGTTGACCGGCACTTGCTCGTCGCGAACGGGCTCATCAACATG
TACGCCAAGTGCGGGAGAGTCGCCTACGCACGCACGGTGTTCGACAGTATGAAGAGCAGGGACCTGGTCTCCTGGAACTC
TATGTTGGCCGGCTATGGGATGCACGGCCTGTGCGACGACGCCCTGGCAGTGTTCACAGACATGGCAGAAGCTAAGGTCG
ATCCTGACGGTGTCACCTTCGTCGCCGTTCTGTCGGCGTGCAGCCATGCAGGGCGCGTGTGGGAGGGCCGCCGGCTGTTT
GATCAGATGATGCGGGAGCACAAGATTACCCCGTCCATGGAGCTCTACACGTGCATGGTCGACCTCCTGGGGCGTGCCGG
CTTGCTCAAGGACGCGTCTGAGCTCATCGAGACGATGCCGGTGGGAGCCGACCTGTGCGTTTGGGGAGCGCTGCTCAACT
CCTGCAGGATCCATGGGGACGCAGCCATGGCCGAAGCCACCATCGCGAAGGTTCTGCAGGCGGGCGCGGAGACCACCGGC
AACCACACGCTGATCACGAACCTGTACGCCGCGTGCGGGATGTGGGACGACTCCAAGAGGGTGAGGGTGATGACGAGAGA
GGCCGGCTTGAGGAAGAGCCCGGGGCAGAGCTGGATCGAGGTGAAGAACAAGGTGTTCGCCTTCGTGGCCGGCAGTGTGC
CCCCGTCAATGCCCAGAGCTGAGGAGATCTTCAGGGTGCTCGACGATTTGTACAGCGCAATGGACGACGAGAGACGTACC
ATGGAGGACGATCATCACATTGTAAGCGTTCGATAGAAGAGAAAGTGTTTGCGGATACACCTATCTCGTACAGCAGGCAA
ACAGAGTGAGCAAGTCT--------------------------TTCAGAGTGGCTCTTGTGAACCGAAGAAGAGCCTGAG
GGTCCTGCAGATCTCGGTGGGCTCTGCCATGGCGCCGTTGCCGTAGTCCCCGCAGGCGAGCCGCTTGGTCACCGGAGGGA
TGAGGGAGACGCCGAGGCCGGCGACAGCGTCGAGGTGGCGCCTGGTGAAGGGGTTGTCCCACATGAAGGTGTTCATGGCC
GGCGCGACGTAGATGGGCTTGCTGTAGTCCCACGCGCGCACCACGCACGTCAGGAGGTTGTCGCACTGCCCGCCGGCGAT
CTGAGCGCGGCAGATCGAGAGAAAAAAAAATA----TCAAAACAGAACAGCACAGA-ACGCCGCAGGTG-----------
-TGTCCACGGTAT--TACAGTACCTACCTTGGCCAGGGTGTTTGCCGAGAGCGGCGCGATGAGCATGGCGTCGGCCCACT
TGCGCAGCTCGATGTGCAGGACCTCGTCGCCGATCCTCCCCCAGGCGGACCACTCGTCGGCGTCGGTGAGGAGGGCGACG
CCGCTTGGGAACGACTCCCTGTCGATGAAGTGTAGGGACGAGGCCGTCGCCACCGCCCGGACGTCGGCCCACTCGGCGAG
GCTCCGGCAGAGGATCTCGAACTTGATCGCCGCCACGCTGCCGGAGGCGGCGACCAGGACGCGGGGCCTCCGAGGCTGGG
CAGCGGCAGCGTCCG------------GCGTCGCGCCCTGCGACGGCTGCTTTCGCGTGGCCATTGCACTTGTGAATTAC
----GATGGCTCTACGTGTTGGAAATGAAAAGGCAACTCTCTGAAATCACTGAAGGGAGATGGGAA-----------GTA
ATTGCGGCACTCACAC-----CTCTCGAGTCTCGATCGCAAACTCAGCAGTAGGGGGACAAGAAGGGCCGGTGTTAGCTG
GAGAAACAAACAGCAGTAAATTGCGCCAACGATCCAGAGCGCAGCAGCAGCAGCAACAGTCACCACCCAAGGA
>chr6B_1
GGCAGGCAGGGAGGCTGGTGGTGTGGCGCGGCGGAGCGCGCGCGCGTCGGGCACGCGCCCA-CCCC-CTGTCGAGGACGA
AGACGACAGAGGAGGGGG-CCAG-TGGGCTGGGCCGGCGCTGGCTGCTGGGCCAGCCAGGCCGCACAGGAGCT-GGCCGC
AGGTAAGTTTCTCCTTTTTATTTC----TTTTCTAATTTTTCTGACATATGTTTTGATTTAATTAAAATACTAAATCATT
TTATCACCTTATGCCAATTTTTGCAGGAGCTAACTATATTATTCCAGAGCTCCTTAATAAATGGCATAGTTTTTGGACCA
TATTATAT--ATATATAA--AT--ATATATATCCAAGGCAAATAATTATCGGATTAATCCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTAGAATTTTACCTCTGACCAATATTTTCAGAGAGCAACATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGGTTTCACAAATCCTCATTTCAAAATTAAATG
GAATTTAAACATGATGCACAAATGACTAGCTAGTCTAGGTCATACCAGACTAGGGATGTGACA-----------------
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>chr6B_1
GGCAGGCAGGGAGGCTGGTGGCGTGGCACGGCGGAGCGCGCGCGCGTCGGGCACGCGCCCA-CCCC-CTGTCGAGGACGA
AGACGACAGAGGAGGGGG-CCAG-TGGGCTGGGCCAGCGCTGGCTGCTGGGCCGGCCAGGCCGCACAGGAGCTGG-CCGC
AGGTAAGTTTCTCCTTTTTATTTC----TTTTCTAATTTTTCTAACATATGTTTTGATTTAATTAAAATACTAAATCATT
TTATCACCTTATGCCAATTTTTGCAGGAGCTAACTATATTATTCCAGAGCTCCTTAATAAATGACATAGTTTTTGGACCA
TATTTTAT--ATATATAAATAT--ATATATATCCAAGGCAAATAATTATCGGATTAATCCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTAGAATTTTACCTCTGACCAATATTTTCAGAGAGCAACATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGGTTTCACAAATCCTCATTTCAAAATTAAATG
GAATTTAAACATGATGCACAAATGACTAGCTAGTCTAGGTCATACCAGACTAGGGATGTGACA-----------------
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>chr6B_1
GGCAGGCAGAGAGGCAGGTGGCGTGGCGCGGCGGAGCGTGCGCGCGTCGGGCACGCGCCCTTCCCC-CCGTCGAGGACAA
AGACGACAGAGGAGGGGC-CCAGGTGGGCTGGGGCGGCGCTGGCTACTGGGCCGGCCAGGCCGCACAGGAGCTGGGCCGC
AGGTAAGTTTCTCCTCTTTATTTC----TTTTCTAATA-TTCTGACATTTGTTTTGATTTAATTAAAATACTAAATCATT
TTATTACCTTACGCCAATTTTTGCAGGAGCTAACTATATTATTCCAGAGCTCCTTAATAAATGGCATAGTTTTTGGACCA
TATTTTAT--ATATATAACA----ATATATATCCAAGGCAAATAATTATCAGATTAATCCAAATGGCAAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTTGAATTTTACCTCTGACCAATATTTTCAGAGAGCAACATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGGTTTCACAAATCCTCATTTCAAAATTAAATG
GAATTTAAACATGATGCACAACTGACTAGCTAGTCTAGGTCATACCAGACTAGGGATGTGACAAAT--------------
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>chr7B_1
GGCAGGCAGGGAGGCTGGTGGCGTGGCGCGGCGGAGCGCGCGCGCGTCGGGCACGCGCCCA-CCCC-CTGTCGAGGACGA
AGACGACAGAGGAGGGGGGCCAG-TGGGCTGGGCCGGCGCTGGCTGCTGGGCCGGCCAGGCCGCACAGGAGTTGGGCCGC
AGGTAAGTTTCTCCTTTTTATTTC----TTTTCTAATTTTTCTGACAGATGTTTTGATTTAATTAAAATACTAAATCATT
TTATCACCCTATGCCAATTTTTGCAGGAGCTAACTATAGTAATCCAGAGCTCCTTAATAAATGGCATAGTTTTTGGACCA
TATTTTAT--ATATATAACA----ATATATATCCAAGGCAAATAATTATCGGATTAATCCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTAGAATTTTACCTCTGACCAATATTTTCAGAGAGCAACATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGGTTTCACAAATCCTCATTTCAAAATTAAATG
GAATTTAAACATGATGCACAAATGACTAGCTAGTCTAGGTCATACCAGACTAGGGATGTGACA-----------------
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>chr7B_1
GGCAGGCAGGGAGGCTGGTGGCGTGGCACGGCGGAGCGCGCGCGCGTCGGGCACGCGCCCA-CCCC-CTGTCGAGGACGA
AGACGACAGAGGAGGGGGGCCAG-TGGGCTGGGCCGGCGCTGGCTGCTGGGCCGGCCAGGCCGCACAGGAGCTGGGCCGC
AGGTAAGTTTCTCCTTTTTATTTC----TTTTCTAATTTTTCTGACATATGTTTTGATTTAATTAAAATACTAAATCATT
TTATCACCCTATGCCAATTTTTGCAGGAGCTAACTATAGTAATCCAGAGCTCCTTAATAAATGGCATAGTTTTTTGACCA
TATTTTAT--ATATATATATAACGATATATATCCAAGGCAAATAATTATCGGATTAATCCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTAGAATTTTACCTCTGACCAATATTTTCAGAGAGCAACATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGGTTTCACAAATCCTCATTTCAAAATTAAATG
GAATTTAAACATGATGCACAAATGACTAGCTAGTCTAGGTCATACCAGACTAGGGATGTGACACCAT-------------
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>chr1B_1
GGCAGGCAGGGAGGCTGGTGGCGTGGCGCGGCGGAGCGCGCGCGCGTCGGGCACGCTCCCATCCCC-CTGTCGAGGACGA
AGACGACAGAGGA-GGGGGCCAG-TGGGCTGGGCCGGCGCTGGCTGCTGGGCCGGCCAGGCCGCACAGGAGCTGGGCCGC
AGGTAAGTTTCTCCTCTTTATTTC----TTTTTCTATTTTTCTGACATATGTTTTGATTTAGTAATAATACTAAATCAAT
TTATTACCTTATGCCAATTTTTGCAGGAGCTAACTATATTATTCCAGAGCTCCTTTATAAATGGCATAATTTTTGGACAA
TATTTTAT--ATATATAACA----ATATATATCCAAGGCAAATAATTATTGGATTAATCCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTTGAATTTTACCTCTGACCAATATTTTCAGAGAGCAATATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGGTTTCACAAATCCTCATTTCAAAATTAAATG
GAATTTAAACATGATGCACAAATGACTAGCTAGTCTAGGTCATACCAGACTAGGGATGTGACAC----------------
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>chr1B_1
GGCAGGCAGGGAGGCTGGTGGCGTGGCCCGGCGGAGCGCGTGCGCGTCGGGCACGCTCCCATCCCC-CTGTCGAGGACGA
AGACGACAGAGGA-GGGGGCCAG-TGGGCTGGGCCGGCGCTGGCTGCTGGGCCGGCCAGGCCGCACAGGAGCTGGGCCGC
AGGTAAGTTTCTCCTCTTTATTTC----TTTTTCTATTTTTCTGACATATGTTTTGATTTAGTAATAATACTAAATCAAT
TTATTACCTTATGCCAATTTTTGCAGGAGCTAACTATATTATTCCAGAGCTCCTTTATAAATGGCATAATTTTTGGACAA
TATTTTATATATATATAACA----ATATATATCCAAGGCAAATAATTATCGGACTAATCCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTTGAATTTTACCTCTGACCAATATTTTCAGAGAGCAACATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGGTTTCACAAATCCTCATTTCAAAATTAAATG
GAATTTAAACATGATGCACAAATGACTAGCTATTCTAGGTCATACCAGACTAGGGATGTGACA-----------------
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>chr2B_1
GGCAGGCAGGGAGGCTGGTGGCGTGGCGCGGTGGCGCGCGCGCGCGCCGGGCACGCTCCCACCC-CTCTGTCGAGGACGA
AGACGACAGAGGA---GGGCCAG-TGGGCTGGGCCGGCGCTGGCTGCTGGGCCGGCCAGGCCGCACAGGAGCTGGGCCGC
AGGTAAGTTTCTCCTCTTTTATTTCTGTTTTCTATTTTTTTCTGACATTTGTTTTGATCTAATTAAAATATTAAATCATT
TTATTACCTTATGCCAATTTTTGCAGGAGCTAACTATATTATTCCAGAGCTCCTTTATAAATGGCATAATTTTTGGACAA
TATTTTATATATATA--ACA----ATATATATCCAAGGCAAATAATTATCGGATTAATCCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTTGTTTGGATTTTACCTCTGACCAATATTTTCAGAGAGCAACATGAACATTTCCTTGGACC
TTTTTGGAACAATTTTTATTTGGGTCA--TTTCAGAGATGATTCTGAGGGTTTCACAAATCCTCATTTCAAAATTAAATG
GAATTTAAACATGATGCACAAATGACTAGCTAGTCTAGGTCATACCAGACTAGGGATGTGACA-----------------
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>chr1A_1
GGCAGGCAGGGAGGCTGGTGGCGTGGCGCGGCGGAGTGCGCGCGCGTCGGGCACGCGCCCACCC-C-CTGTCGAGGACGA
AGACGACAGAGGA-GGGGGCCAG-TGGGCTGGGCCAGCGCTGGCTGCTGGGCCGGCCAGGCCGCACAGGAGCTGGGCCGC
AGGTAAGTTTCTCCTTTTTATTTC----TTTTCTAATTTTTCTGACATATGTTTTGATTTAATTAAAATACTAAATCATT
TTATCACCTTATGCCAATTTTTGCAGGAGCTAACTATATTATTCCAGAGCTCCTTAATAAATGGCATAGTTTTTGGACCA
TATTATATATATAT--AACA----ATATATATCCAAGGCAAATAATTATCGGATTAATCCAAATGGCCAAAATTAAATAT
CCATGAGCTCCTAAAATATTGGTTTGATTTTTATCTCTGTCCAATATTTTCAGAGGGCAACATGAACATTTTCTTGGACC
CTTTTGGAGCAATTTTTATTTGGGGTTATTTTCAAAAATGATTCTGAGGGTTCCACCAATCCTCATTTCAAATTAAAATG
GAATTTAAAAATGATGCACAACTGACTAGCTAGTCTAGGTCATACCAGACTAGGGATGTGACA-----------------
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>chr3D_656
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--------------------------------AATGTTGAAGCCATTGAGACAATGATAGCTGGAGGCAGATCTTTGGGA
GTAGCTGCAGCAATCTTCCCACAATTGTTATTACCTCGTTTGTGAATTCCCGCAAACTATCTTGGACATTGTTATAGAGA
AGCAAATTATGTTGCG------------------------------ATTTTATAGTACTACAG-TAGGTTTGAAGAGTTT
CCGAATGAACCTCTCTAGTATGCCAAAAACGCTTTCATATTATGAAACGGAGGGAGTAGTAACTATTGTCAAAAGCTAAT
AATAAAGGGGTGATGATTTGATTAAAAAAAACAAGAAATCTTCCCAAATG---GTTTCGCTACGCTGACTGGTGGGACCC
AG-TGCCAGATGCGCCGTTTCCTCCGAGCAACCGATTCTCGTCGATGCCACCTGCAGCGCCGCCGCCTCCTCTCCGTCGT
CGCTGGCGGCGACCAACCGATCCGCGACCTCCCGCCGACCACCTGCGCTGTCCCATGGAACCGCCTCCTCCGCGCCCACA
TCTGCCGCTCCCGTCCGGACCTCGCGCTCGCGCTCTACCGCCGCATGCGCGCGCTCTCCCCCACGCTCCCCAACTCCTAC
ACACTCCCCCTCGCCCTCCGCGCGGCGACCTCCCC---AATCGCGTCCGCCATCCACGCACACGCCCTCCACCTTGGCCT
GCACGCCCACCCGGACGTCGCCGGGCAGCTCCTCGCCGCCTATGCCAGGCACGGCCGCGCCGATGAGGCCCACCACGTGT
TCGACGCAATGCCGTCGAAGAGGGCCACCATGTCATGGAACACGCTCATCTCCGCGTACTCGGTCTGCTGCGACCCCAAC
AATGCAATGGCTACGTTTGCGCGCATGGCCGCT---GCTGGCGAGGCGCTCCCCGACGCCGTGACTTGGACGACGCTGCT
CTCGGCGCACGCGAGGTGCGGTAAGCACCCGGTGGTTCTTGAACTGTTCGGAGACATGCACCGCAGCGGATGCGAAGGTA
ACGCCGAGTCCGTGGCTGTGGCGCTCTCCGCGTGCCCTTATGCCGGCGACCTCGCATTGGCGAAAGGGAGGGCGATACAT
GGCTACGGCGTCGCGAAGGGCGTCGTGCGTGGCTACCTGTTCGTGACGAACTCCCTGGTGTGCATGTACGGCAAGCTGGG
GAAGATGGACGACGCCCGGGAGGTTTTCCGGGAAGCCGGGGAGAGGAACACCGTGACATGGAACGCCCTCATCACCAGCT
ACGCTGCTGCTGGGATGTGCGACGAAGCGTTGAACGTGCTCGTCCGGATGGAGCAGCGAGGCGGCATGGTTGCTCCCAAT
GTGATGAGCTGGAGCGCTGTCATCGGCGGCTTCGCGTCGTCCGGGGACAATGAGCGCGCACTGGAGCTGTTCCGGCGGAT
GCAACAGCAATGGCTTTCGCCGAACGTGGTGACCTTAGCTACCGTTCTCTCAGCCTGCACCGAGCAGCTGGCGGTGCGGC
TCGGTCGGGAGGTCCATGCCGATGCGATCAGATCCATGGTCGACCGGCACTCGCTCGTCGCGAACGGGCTCATCAACATG
TACGCCAAGTGCGGGAGAGTCGCCGACGCACGCACGGTGTTCGACGGTATGAAGAGCAGGGACCTGGTCTCCTGGAACTC
TATGTTGGCCGGCTATGGGATGCACGGCCTGTGCGACGACGCCCTGGCAGTGTTCACAGACATGGCAGAAGCTAAGGTCG
ATCCTGACGGTGTCACCTTCGTCGCCGTTCTGTCCGCGTGTAGCCACGCAGGGCGGGTGTCCGAGGGCCGCCGTCTGTTC
GATCAGATGATACTGGAGCACAAGATTTCCCCATCCATGGAGCACTACACGTGCATGGTAGACCTCCTGGGGCGGGCTGG
CTTGCTCAAGGAGGCGTCCGAGTTCATCGAGACGATGCCGATGGGAGCCGACCTGTGCGTGTGGGGCGCGCTGCTCAACT
CCTGCAGGATCCATGGGGACGCAGCAATGGCCGAAGCCACCATAGCGAAGGCTCTGCAGGCCGGCGTGGTGACCACCGGC
AACCACACGCTGATCACGAACCTGTACGCCGCGTGCGGGATGTGGGACGACTCCAAGAGGGTGAGGGTGATGACGAGGGA
GGCCGGCTTGAGGAAGAACCCGGGGCAGAGCTGGGTTGAGGTGAAGAACAAGGTGTTTGCCTTCATGGCCGGCAGCGTCC
CGCCGTCGATGCCCAGAGCTGAGGACGTCTTCAGAGTGCTCGACGATTTGTATCGCGAAATGGATGACCAGAGACGCGCC
ATAGAGGAGGATCA---CATTGTAAACGTTTGATAGAAGAGAAAGCTTTTGCAGATAGATGTATCTCGTACAGCAGGCAA
ACAGAGTGAGAGATACTGAAGAACTTGGGCGAGCTGCAGAGTGTTCAGAGTGGAACTTGTGAGCCGAAGAAGAGCCTGAG
GGTCCTGCAGATCTCGGCGGGCTCTGCCATGGCGCCGTTGCCGTAGTCCCCGCAGGCGAGCCGCTTGGTCACCGGAGGGA
TGAGGGAGACGCCGAGGCCGGCGACGACGTCAAGGTGTCGCCTAGTGAAGGGGTTGTCCCACATGAAGGTGTTCATGGCC
CGCGCGACGTAGATGGGCTTGCTGTAGTCCCACGCGCGCACCACGCACGTCAGGAGGTTGTCGCACAGCCCGCCGGCGAT
CTGAGCGCGGCGGATCGAGAGAAAAAAG-----TGGTCAAAACAGAGCAGCAACGGAACTCCGCATGACTCGGTGTTCAG
CTGTTCACGGTATTG-------CCTACCTTGGCCAGGGTGTTGGCCGAGAGCGGCGCGATGAGCATGGCGTCGGCCCACT
TGCGCAGCTCGATGTGCAGGACCTCGTCGCCGATCCTCCGCCAGGTGGACCACTCGTCGGCGTCGGTGAGGAGGGCGACG
CCGCTCGGGAAGGACTCCCTGTCGATGAAGTGCAGGGACGAGGCCGTCGCCACCGCCCGGACGTCGGCCCACTCGGCGAG
GCTCCGGCAGAGGATCTCGAACTTGATCGCCGCCACGCTGCCGGAGGCGGCGACCAGGACGCGGGGCCTCCGAGGCCGGG
CGGCGCCGGCGCCCG------------GCG------------ACGGCTGCTCTTGCGTGGCCATTGCACTTGTGAATTAC
----GATGGCTCTACGTGTTGGAAATGAAAAGGCAACTCTCTGAAATCACTGAAGGGAGATGGGAA-----------GTA
ATTGCGGCACTCACAC-----C-------TCTAGATCGCAAACTCAGCAGGAGGGGGACAAGAAAGGCCGGTGTTAGCTG
GAGAAACAAACAGCAGTAAATTGCGCCAGCGATCCAGAGCGCAGCAGCAGCAGCAACAGGCAC----------
>chr3A_897
TGTAAC--------------------------------------------------------------------------
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-----------------------------------------------------------------TTATCACAAGCTAAT
AA--AAGGGGCGATGATGA---TAAAAAAAA-----AATCTTACCAAGTGGGCGTTATGCTACGCTGGCTGGTAGGACCC
ATTTGCCAGATGCACCGTCTCCTCCGAACAACCGCTTCTCGTGGATGCATCCGGCAGCGCCACCGCCTCCTCTCCGCCGT
CGCTGGCGGCGACCAACCGATCCGCGACCTCCCGCCGACCACCTGCGCGGTCCCATGGAACCGCCTCCTCTGCGCCCACA
TCTGCCGCTCCCGTCCAGACCTTGCGCTCGCGCTCTACCGCCGCATGCGCGCGCTCTGCCCCGCGCTCCCTAACACCTAC
ACGCTCCCCCTCGCCCTCCGCGCGGCGACCTCCCCACGAATCGCGTCCGCCATCCACGCACACGCCCTCCACCTTAGCTT
GCATGCCCACCCGGACGTCGCCGGCCAGCTCCTCGCCGCCTACGCCAGGCACGGCCGCCCCGACGAGGCCCGCCACGTGT
TCGACGCAATGCCGTCCAAGAGGACCACCATGTCCTGGAACACGCTCATCTCCGCTTATTCGGTCTGCTGCGACCCCGAC
AGTGCAATGGCCACGTTCGGGCGCATGGCCGCCGCCGCTGACGAGGCGCTCCCCGACGCCGTGACGTGGACGACGCTGCT
CTCGGCGCACGCGAGGTGCGGCAAGCACCCGGTGGTTCTTGAACTGTTCGGAGACATGCACCGCAGCGGATGTGAAGGGA
ATGCCGAGTCCGTGGCCGTGGCGCTCTCGGCGTGCCCCTACGCCGGCGACCTCGCGTTGGGGAAAGGGAGGGCGATACAT
GGCTACGGCGTCGCAAAGGGCGTCGTCCGTGGCTACCTGTTCGTCACCAACTCGCTGGTGTGCATGTACGGCAAGCTGGG
GAAGATGGACGACGCCCGGAAGGTTTTCGGGGAAGCTGGAGAGAAGAACACCGTGACATGGAACGCCCTCGTCACCAGCT
ACGCCGCGTCTGGGATGTGCGACGAAGCGTTGGACGTGCTCGTCCGGATGGAGCAGCGTGGCGGCATGGCTGCGCCCAAT
GTGGTGAGCTGGAGCGCTGTCATTGGCGGCTTCGCGTCGTCCGGTGACAATGAGCGCGCACTGGAGCTGTTCCGGCGGAT
GCAACGGCGATGGCTTTCGCCGAACGTGGTGACCTTAGCCACCGTTCTCTCAGCCTGCGCCGAGCTACTGGCGGTGCGGT
TGGGTCGGGAGGTCCATGCCGGCGCGATCAGATCCATGCTCGACCGGCACTCGCTCGTCGCGAACGGGCTCATCAACATG
TACGCCAAGTGCGGGAGAGTGGCCTACGCACGCACGGTGTTCGACGGTATGAAGAGCAGGGACCTGGTCTCCTGGAACTC
CATGTTGGCCAGCTACGGGATGCACGGCCTGTGCGACGACGCCCTTGCAGTGTTCGCAGACATGGCCGAAGCTAAGGTCG
ATCCTGACGGCGTCACCTTCGTCGCCGTTCTGTCGGCGTGCAGCCACGCAGGGCGCGTGTCGGAGGGCCGCCGTCTGTTT
GATCAGATGATACTGGAGCACAGGATTTCCCCATCCATGGAGCACTACACGTGCATGGTCGACCTCCTGGGCCGTGCCGG
CTTGCTCAAGGACGCGTCTGAGCTCATCGAGACGATGCCGGTGGGAGCCGACCTGTGCGTGTGGGGAGCGCTGCTCAACT
CGTGCAGGATCCATGGGGACGCAGCCATGGCCGAAGCCACCATCGCGAAGGTTCTGCAGGCCGGCGCGGAGACCACCGGC
AACCACACGCTGATCACGAACCTGTACGCCGCGTGCGGGATGTGGGACGAGTCCAAGAGGGTGAGGGTGATGACGAGAGA
GGCCGGCTTGAGGAAGAGCCCCGGGCAGAGCTGGATCGAGGTGAAGAACAAGGTGTTCGCCTTCGTGGCCGGCAGTGTGC
CGCCGTCGATGCCCGGAGCTGAGGAGATCTTCAGGGTGCTCGACGATTTGTACAGCGAAATGGACGACGAGAGACACACC
ATGGAGCACGATCACCACATTGTAAGCGTTTGATAGAAGAGGAAGTGTTTGCGGATACACCTATCTCGTACAGCAGGCAA
ACAGAGTGAGCAAGTCT--------------------------TTCAGAATGGTTCTTGTGAACCGAAGAAGAGCCTGAG
GGTCCTGCAGATCTCGGCGGGCTCTGCCATGGCGCCGTTGCCGTAGTCCCCGCAGGCGAGCCGCTTGGTCACCGGAGGGA
TGAGGGAGACGCCGAGGCCGGCGGCGGCGTCGAGATGGCGGCTGGTGAAGGGGTTGTCCCACATGAAGGTGTTCATGGCT
GGCGCGACGTAGATGGGCTTGCTGTAGTCCCACGCGCGCACCACGCACGTCAGGAGGTTGTCGCACAGCCCGCCAGCGAT
CTGAGCGCGGCAGATCGAGAGAAGAAAAAAAAATGGTCAAAGCAGGACAGCGACGAGACGCCCACGGTG-----------
-TGTCCACGGTATTTTACAGTACCTACCTTGGCCAGGGTGTTGGCCGAGAGTGGCGCGATGAGCATGGCGTCGGCCCACT
CGCACAGCTCGATGTGCAGGACCTCGTCGCCGATCCTCCCCCAGGCGGACCACTCGTCGGCGTCGGTGAGGAGGGCGACG
CCGCTCGGGAACGACTCCCTGTCGATGAAGTGCAGGGACGAGGCCGTCGCCACCGCCCGGACGTCGGCCCACTCGGCGAG
GCTCCGGCACAGGACCTCGAACTTGATCGCCGCCACGCTGCCGGAGGCGGCGACCAGGACGCGGGGCCTCCGAGGCTGAG
TGGCGGCAGCGTCCGGCGTCACGCCCTGCG------------ACGGCTGCTCTCGCGTGGCCATGGCCCTGGTGAAATTA
CTCTGATGGCTCTTCGTGTTGGATATGGAAAGGCAACTCTCTGAAATCACTAGGTGAAGGGAGGTAACAAGTACACTGTA
ACTGCGGCACTGAAACGAAATC-------TGTAGATCGCAAACTG---AGGAGGGGGACAAGAAGGCCCGGAGTTAGCTG
GAGAAACAAACAGCAGTAAATGGCGCCAGCGCCAGCGCCAGC-------------------------------
>SNPs
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-------------------------S------------------------------------------------------
-----------------------------------S----------------------S---------------------
----------------------------------S-----S---------------------------------------
-------------------------------------------------S------------------------------
S--------------------------------S---------------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----S--S---------S----S--------------------S
-------------------------------S--------------------------------------------S---
--------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------SSSS-------------S--
--S-S-----SSS--SSSSSSSSS-SSS-S-SS-------------------------------S---------------
-----S---SSSS-------------------------S-------S------------------S--------------
------------S----------------------------------------------------------S--------
-------------------------------------------------S------------------------------
------------------------------S-------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
------------------S-------------------SS----------------------------------------
---------------------------S--------------------S-------------------------------
----------S------------------------------------------S-------------------S------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
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---------------------S----------------------------------------------------------
----------------------------------------S----------S----------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S-------------S------------S------
-----------S-S-------------S----S----------S------------------------------------
------------------------------------------------------------S-------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S-----S-------------------------------------------------S------------------S---
--------------S---------------S-------------------------------------------------
-----------------------------------------------------S--------------------------
-----------------S--------------------------------------------------------------
-------------------------S------------------------------------------------------
------------------------------------------------------------------S-------------
------------------------------S---------------------SS--------------------------
------------------------------------------S-------------------------------------
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-----S--------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-S----------------------------SSSSSSSSSSSS---------S----------------------------
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----------------------SSSSSSS---S-----------------S-----------------------------
----------------------------S------------------------------S---SSSSSSSSSS
>forward_827
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-------TCTGTTGCGCATGAATTGGC-----------------------------------------------------
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>reverse_2524
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-------------------------------------------TCTACACGTGCATGGTCGAC-----------------
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-------------------------------------------------------------------------
>forward_2513
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-------------GGGAGCACAAGATTACCCCG-----------------------------------------------
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-------------------------------------------------------------------------
>reverse_3949
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----------------------------GTCTCGATCGCAAACTCAGC--------------------------------
-------------------------------------------------------------------------
