>input_sequence_40596
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----------------------------------------GTACTCGACGCTGCCTCCAGTCCATAGTCACACACCACCA
CCACCTTCCC----CCCAAGCGAGCAAACACTTAATC------ATGGCGACTCTGCGGCGGTGCTCCGGGCTGCTGCTCG
CGGTGGTGGCGGTGGCGCTGGCGGCGGGGATGGCGGCGGCGCAGGGGCCGGCCGGCGCGCCGGCGCCGGCGGCCGGGTTC
AGCTCGGAGTGCATGACCGCGGTGCTCAACATGTCCGACTGCCTGCCGTACGTGGAGAGCGGGAGCAAGACGCGGCACCC
GGACACGGCCTGCTGCCCGGAGCTGGACGGCCTGCTGCAGTCCAACCCCGTCTGCCTCTGCCAGCTGCTCGCCGGCGGCG
CCGACTCCTACGGCATCAGCGTCGACTACAAGCGCGCCATGGCGCTGCCCGGCGTCTGCCGCCTCACCGCGCCGCCCCTC
AGCGCCTGCGCAGGTAATGTATCCTTCGCTTCTTTTCTGCCGGCGCCTTCCTCCATACTGTCTCGTACTACTTCCTCTGT
ACCGAAATACTTGTATTTCGGAGAACTGCTCCCAACTACAGAGGTAGTACCACACATTTCGTGCTTATACTGTACATCGA
CGAAGAGCAAAAGTAT-TTACAAGGCTCACTGATCTGTCTACGCAGAAAAGAGATTTCATCTTCAAGCGGGTGATAATAG
AATATGGAAAATCGTCAATTATTTACCCATGCCAATCTGTAGTTCTGTACTCAACCAGGAGTAGCCTAGTGAAAGAGTAC
TAGGGTCTAGTAATAACCTTGTCAGCGTATTATTTGTCCAACCTAATGGCACTACTTACTCTTTTCCGGTTTATAGGGCT
TATCTTAAAATTTTAATTTTCTCATTTTATAAGTCTCAATTTGGTTATTCTCCATCACATGTTTAGATTGCAAGATGCAA
TAAATCATTGCATGCAAGTATTAAGAGAAAATTGATCAATGCATGTACTTTATGCATGCATGCATTACAATTAATGCATT
GGTAAACACAATTTTTAAGAAAACAAGCGCATTAATTGAGTGGTTTTGCAAACTACAAAAATTATTTCATCACTAACCAT
CTACCTTGATTGGTGAGATTTGCGAATTAAGCCATATAAACCGGAAAGGAGCTAGTATGATTTAGCAATCGAATTTCATC
GAATTATCCTCGCAGAAAAGAACACATTGAATTCTGGATGTACTACAGTATCAGTCTT----ACTTATTAACAGAGACAT
GAAAA-TGCAGCTTTTGGAGTCCCCGTGGGGCCTTCTTCGGCGCCATTAACAGGAGT---CTCTCCATCCGCTACAGGGC
CACAGATGCCTGGTAAGTCAGCCATTACTACTCTGCTTCGCCTTGGTTCTTCAGTCC----TTTTTACTTTAGCAACTAC
TCTTTCCGTTTGGAATTATTTGTCGCAGAAATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATAACTGAGAC
AAATAATTTCGAATGGAGGGAGTATTACTA--------------------------------------------------
----------------------TTACTAGTGCTCCTTTT-----------------------------------------
-------TACCTCAAAGAATTGCTCTTACCATGCGTTCTGTTTATAATCTTG----------------------------
------------------------------TGCCTCCTGCAGAGAACCCGCCATCCGCAACGCCGTCCAAGTCCAAGTCC
CACGCCCCGGGCCGCCTCACCGGCCGCGGCCTAGTCGCCCTCGCCGCGCTGCCGCTGGCGATCACGGCCGCCGCCATGTT
TTAGGGCAGCAAGAGTTCGCGGACGTGTGGCGTTGTGCCGGTCTCACACGCTTGGCCCGACGAGATCACATTCTTCTCCA
TTCTTGCCTCACATTCTCTACTGGTGTACACGAGAGATTATTTTTCTGGTTGATCCATT-CCTTGTCGCAATTACTTTAC
CTGTGTGTAATCTGCTAGAGACGGTTGACAGTCTGTGTATTACGTAGC--------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------TTTGCATT
GCTGCTACCACATTTGATTCTTT---------------------------------------------------------
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---------------------------ATATATATCATCGCCAATTTTCGTACTA-------------------------
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----------------------------------------------------------
>chr3A_1_TraesCS3A01G338000
CATGGATCGTGGGTCGCGTCCATCGCCGGTTCCAGGTTTCGATTTTCCAAGCTGCTTCGCCCGCCGCAGCGATGGATGGC
GCGCGATGGTACCGCACGTGCTACAGTTACGGTGCGGCTGCCTGCCGCATTCATATCGGCATTCATTCGTGGCGAGCAGC
AGCCTGTCCCAGCCAGCAACGGCGAGCCTGTAGCGGTGGTGGTGGTACTGCGCCGGAGATCGGGCCGGGTCAGGATGGGC
G----ACGTACTGGACGGACCCGAGCACCGCCCC-------------GATGGTTTTGGTACGTAGTACAACTGTTGGATT
TGACCGGCCTTAAACCTAGCCGAGCAAACGGTATCTCGCCCGTAACGGCAACAGCGGCTGGCTCTGTCCATGACTGCACC
TCCGTGCACACCGGCAGATCCGGCACGGAATTGGGCGCTTCGACGGGTCATCGTCGGCCATCAGTACTGTGTGTTCATCC
CGTAACAGTATGACTGTATGAGA--TCACTATGTAATGTGTTTTCAGTCTCGGACGGCACGGCACGCCGCGG--------
--TACGACGCGTCTAATCTATCGTCCCATATCTGCACAGTGCACAGACATCAGACATGTACGTTTGAATTCACTTCAAAT
TAACAGCCTGGCTGGGTGTCTGTGGTTTTGCAT-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TAGTTAGCCCATCTAAT--------------
---------------AATCAATCAATATGGCAAAGGATGTGCCTAGGTCTCAGTCAACTGAAACTTAACCAAGTCTTAGT
AAAGTGACATGACATATAGAAAAAAAACGAAAAGC---TAAAAAAAAAGCACGAACCTTCAGATAAGATCCGACGAATAC
AACATCGACTGAGACTTTAGCAACCCTATATGACAAATTCCACAATAAAAATAGCACTGCCCGTGGTAGCAAA---TCAC
CGGAACGGGCATGCACGCAGCTCGACCGACCGGTCCATTTCGGCGCACCGCCGCAGCACCCACAACGGGCGGCGGCCCTA
TTTCCCGCTATATATACTCGCGCGCACACATCGGTCATACGTACTCGACGCTGCCTCCAGTCCATAGTCACACACCACCA
CCACCTTCCC----CCCAAGCGAGCAAACACTTAATC------ATGGCGACTCTGCGGCGGTGCTCCGGGCTGCTGCTCG
CGGTGGTGGCGGTGGCGCTGGCGGCGGGGATGGCGGCGGCGCAGGGGCCGGCCGGCGCGCCGGCGCCGGCGGCCGGGTTC
AGCTCGGAGTGCATGACCGCGGTGCTCAACATGTCCGACTGCCTGCCGTACGTGGAGAGCGGGAGCAAGACGCGGCACCC
GGACACGGCCTGCTGCCCGGAGCTGGACGGCCTGCTGCAGTCCAACCCCGTCTGCCTCTGCCAGCTGCTCGCCGGCGGCG
CCGACTCCTACGGCATCAGCGTCGACTACAAGCGCGCCATGGCGCTGCCCGGCGTCTGCCGCCTCACCGCGCCGCCCCTC
AGCGCCTGCGCAGGTAATGTATCCTTCGCTTCTTTTCTGCCGGCGCCTTCCTCCATACTGTCTCGTACTACTTCCTCTGT
ACCGAAATACTTGTATTTCGGAGAACTGCTCCCAACTACAGAGGTAGTACCACACATTTCGTGCTTATACTGTACATCGA
CGAAGAGCAAAAGTAT-TTACAAGGCTCACTGATCTGTCTACGCAGAAAAGAGATTTCATCTTCAAGCGGGTGATAATAG
AATATGGAAAATCGTCAATTATTTACCCATGCCAATCTGTAGTTCTGTACTCAACCAGGAGTAGCCTAGTGAAAGAGTAC
TAGGGTCTAGTAATAACCTTGTCAGCGTATTATTTGTCCAACCTAATGGCACTACTTACTCTTTTCCGGTTTATAGGGCT
TATCTTAAAATTTTAATTTTCTCATTTTATAAGTCTCAATTTGGTTATTCTCCATCACATGTTTAGATTGCAAGATGCAA
TAAATCATTGCATGCAAGTATTAAGAGAAAATTGATCAATGCATGTACTTTATGCATGCATGCATTACAATTAATGCATT
GGTAAACACAATTTTTAAGAAAACAAGCGCATTAATTGAGTGGTTTTGCAAACTACAAAAATTATTTCATCACTAACCAT
CTACCTTGATTGGTGAGATTTGCGAATTAAGCCATATAAACCGGAAAGGAGCTAGTATGATTTAGCAATCGAATTTCATC
GAATTATCCTCGCAGAAAAGAACACATTGAATTCTGGATGTACTACAGTATCAGTCTT----ACTTATTAACAGAGACAT
GAAAA-TGCAGCTTTTGGAGTCCCCGTGGGGCCTTCTTCGGCGCCATTAACAGGAGT---CTCTCCATCCGCTACAGGGC
CACAGATGCCTGGTAAGTCAGCCATTACTACTCTGCTTCGCCTTGGTTCTTCAGTCC----TTTTTACTTTAGCAACTAC
TCTTTCCGTTTGGAATTATTTGTCGCAGAAATGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATAACTGAGAC
AAATAATTTCGAATGGAGGGAGTATTACTA--------------------------------------------------
----------------------TTACTAGTGCTCCTTTT-----------------------------------------
-------TACCTCAAAGAATTGCTCTTACCATGCGTTCTGTTTATAATCTTG----------------------------
------------------------------TGCCTCCTGCAGAGAACCCGCCATCCGCAACGCCGTCCAAGTCCAAGTCC
CACGCCCCGGGCCGCCTCACCGGCCGCGGCCTAGTCGCCCTCGCCGCGCTGCCGCTGGCGATCACGGCCGCCGCCATGTT
TTAGGGCAGCAAGAGTTCGCGGACGTGTGGCGTTGTGCCGGTCTCACACGCTTGGCCCGACGAGATCACATTCTTCTCCA
TTCTTGCCTCACATTCTCTACTGGTGTACACGAGAGATTATTTTTCTGGTTGATCCATT-CCTTGTCGCAATTACTTTAC
CTGTGTGTAATCTGCTAGAGACGGTTGACAGTCTGTGTATTACGTAGC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTTGCATT
GCTGCTACCACATTTGATTCTTT---------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------ATATATATCATCGCCAATTTTCGTACTAC--------------GCCGTGGTCT
ACCTGGGTCCTGAATGGGATCACGTGAAGTGCTGGCTGATTTGAGCATTGATGATACGGGAGGGGACTTGGGGGAATGGT
GTTGTGCGGTGTGGGGGAAGAAGCATTGGGATCGCCGTCGGTGGACGGTGGGCAAAGCCATCATGACACCGGCACCGATG
GATCTACTATCAGCGCTGTTTGATTCATCAATGCTAAGATTCGTCCCCATTCAATTCCTCAACGGTTGCCCTGCCATCTA
CTATTACCAACCACTTCACTAAATACTCAAAAACTAGATGGAGGGAGGGGCATGAAAT----------------------
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-ATAATTTGGATCGGACAGCTAATTTGGGACACACACATTTAGAGCATCTCTACCGATCCCT-AAAACCGGTTAAAGAAG
TAAAAAAAAGAAAATCGATTTTAAGGGTTTATTAAACCGAATCTAGCCTATCCCTGCTAGCT------------------
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-------------------------------------------------------------------ATTTATTTGTCTA
AGCACACCGTAGTACTAGTACTGTAATCGCCTGGCCGCAACATACCGCCGCCGGTGTGCTGCATTGCAGGTGTCAACGAA
ATGCATGAGCCAAATGTAAGCTATAGAGAGTTACGTTTACTAAATCATTAATAACATGCGTTGTCGTGTCCGTCCATTTT
AAATTTTGTGTGACCGTGTTAGAAATGTAAAACACACAGTTCCTAAACAAAATGGAAGTTTTATAATTTTCATTGGGCTG
GTTGATCGCGTGTGTCACCATGTCCATTCATTTATCTGACAGAATAATAGAAATTTATGCAACTACTACGGAGAGTAATT
AACAATATGTAGTATCATCAAATAGCTTCATACCACACGTGGTTTCTTTGCATCAGACAACAATGTTGCCAAATGGCGGA
ATAATCTTCATGAGTGGACTGACTAATGAAATAGAACCCACAGACATACAATTTCTTGGATATGCCCGTTGCGAGGTTTG
TGACAAAAACATAGTTTTGCATGAAGGTAAAACTAATGAATCAAATACATTTGAGTAG
>chr3D_1
CATGGATCATGGGCCGCATCGGCGGTTTCTC----GTTTCGATTTTCCAAGCTGCTTCGCCCGCCGCAGTGATGGGTGGC
GCGCGCTGGTACCACACGTGCTACAGCTACGGTGCGG----CTGCCGCATTCATTTCGGCATTCATTCGTGGCGAGCAGC
AGCCTGTCCCAGCCAGCAACGGCGAGCCTGTAGCGGC---GGCGGTACCACGCCGGAGATCGGGCCGGGTCAGGACGGGC
CACGTACGTACCGGACGGACCCGAGCACCACCCCGACCGGCCGGCCCGATGGTTTTGGTAC---GTACAACTGTTGGATT
TGACCG------------------------------------T------AACAGTGGCTCGCTCCGCCCGTGACCGCACC
TCCCTGCACACTGGCAGACCCGGCACGGAATTGGGCGCTTCGACGGGTCATCATCGGTCATCAGTGCTGTGTGTTCATTC
CGTAACA--------GTATGAGA--TCGCTATGTAATGTGTTTTCAGTCTCGGACG-CATGGCACGGCACAGCACGGCAC
GATACGACGCGTCTAATCTACCGCCTCAAATCTCCAAAGTGCAG-------AGCCTTGTACGTTTGAATTCACCTCAAAT
TAACAGCCTGGCTGGGTGTGCGTGG--TTGCCT-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TAGTTAGCCCATCTAAT--------------
------------------CAACCAATATGGTAAAGGATGTGGCTAGGTCTCAGTCAACTAAAACTTAACCAAGTTTAAAT
CAAGGGACATAATATATAAAAGAAAAAAAACTA--AAATAAAAAATTTGCACGGATCTTCTTATAAGATCGGACGAATAT
AGCACACACGGAGACTTGGCAATCTCATATGACAAAATGCCACAATAAAAATAGCACTGCCCGTAGTAGCAAAGGATCAG
CAGAACGGGCATGCACGCAGCCCGACCGACCGGTCCATTTCGGCGCACCGCCACAACACCCACAA----CGGCGGCCCTA
TTTCCCGCTATATATAACCGCGCACACACATCGGTCACACGTACTCGACCCTGCCTCCAGTCCATAGCCATACACCACCA
CCTTCCTCCCAAGTCCCAAGCGAACAAACACTCGATCGCTTCGATGGCGACTCTGCGGCGGTGCTCCGGGCTGTTGCTCG
CGGCGGTGGCGCTGGCGCTGGCGGCGGGGATGGCGGCGGCGCAGGGGCCGGCCGGCGCGCCGGCGCCGGCGGCCGGGATC
AGCTCGGAGTGCATGACCGCGGTGCTCAACATGTCCGACTGCCTGCCGTACGTGGAGAGCGGGAGCAAGACGCGGCACCC
GGACAAGGCCTGCTGCCCGGAGCTGGACGGCCTGCTGCAGTCCAACCCCGTCTGCCTCTGCCAGCTGCTCGCCGGCGGCG
CCGACTCCTACGGAATCAGCGTCGACTACAAGCGCGCCATGGCGCTGCCCGGCGTCTGCCGCCTCAACGCGCCGCCCCTC
AGCGCCTGCGCAGGTAATGTATCCTTCGCTTCTTTTCTGCCGTCGCTTCGCTTGGAGTAAGCTAGTCAGTGATCGAGTA-
--------------------------------------------------------------GCTTAAACTGTACATGGA
CGAAAGGCAGAAGTAC-TCACAAGGTTCACTGATCTGTCTACACAGAAAAGAGATTTCATCTTCAAGCGGGTGATAATAG
AATATGGAAAATCGTTAATTATTTACTCATGCCAA--------TCTGTACTCAAGCAGGAGTAGCCTAGTGAAAGAAGTA
CTACGGTC--TAATAACCTTGTCTGAGTATTATTCGCCCAACCTAATGGC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATGATTTAGCAATCGAATTTCACC
GGATTATCCTCGCCGAAAAGAACACGTTGAATTTTGTATGTACAGTAGCAGTC--------AACTTATTAACAGAGACAA
AAAAA-TGCAGCTTTTGGAGTCCCCGTGGGGCCTTCTTCGGCGCCATTAACAGGAGTGCCCTCTCCATCCGCTACAGGAC
CACTGATGCCTGGTA----AGCCATTACTACTCTGCTTTGCCTTGGTTCTTCTTCAGTCCTTTTTTACTTCAGCAACTCT
TACCAGTTTTACTTGGCCTGGCTACATTGAACACATCAGTTACAAATCAAACACAAGTGTTTTATAATGAGGCATCCAGA
GTCTTTTGTTCTTTGAACGACGGAGATATTCACACTAGCTAGCTCACACCCTGAAACATGTATTGCATACATCAGCCATC
AAAAGTTATAGTACTAAATCCTTTACCAGTGCTCAATTTTTCTCTGGCATGACCATTTGCAAATTATAAGGATCTTTCCG
CCGACTCTACTTCAGAGGATAGCTCTTAGCCAGTGTTCTGTTTATATTCCACTTAAAAGATGCTCTCTAGTTCACCATCG
CACATGTACTCTGCTAACTCTGC------CTGCCTCCTGCAGAGAACCCGCCATCCGCAACGCCGTCCAAGTCGAAGTCC
CACGCCCCGGGCCGCCTCAACGGCCGCGGCCTCGTCGCCCTCGCCGCGCTGCCGCTGGCGATCACGGCCGCCGCCATGTT
CTAGGGCAGCAAGAGTTCGCGGACGTGTGGCATTGTGCCGGTCTCACACGCTTGGCCCGATGAGATCACATTCTTCTCCA
TTCTTGCCTCACATTCTCATTGC-TGTACACGAGAGATTATTTTTCTGGTTGATCCATTTCCTTGTCGCAATTCCCTTAC
CTGTGTGTAATCTGCTAGAGATGGTTGACAGTCTGTGTATTACGTAGA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTTGCATT
GCTGCTACTAAATTAATTCTTTCGTTATGTGTC-TCTTCCTCTTATATATAATACTAGCAAGATGCCCGTGCATTGCACG
GAACATTAAGATGTATTTTTTTACAAAACATCTGTTGTGATTGACCCATGCGGGAGTAATTCCATGTGTAAAAACTAATG
ATATCTCGAGAAAGAGGAGAGATAAGGTGAGGAGGAGTTGGGCATGGTGGTGATTGATGGTCAGAGTGAGCGGAGGCATG
GGGATGGACGACGCCGACAGCGGCCATCAAGCTAGATTATTTTAGAGACTTTTTTTTAATTGCTCAACAATGAGGTTGTG
GGAGATAGGGATGAACGAGAGTAGGCCTTATCTGCAAATGTGGAGAGAGGTGCGGGTATTTTTTTGCAAAATTGCTATAG
TTTGCTTTCTATCCGTCAGATATAGATCGCACGGTCTATATTGCAAAATGGCAGGCACACCATCATCACCAATTCGGTTT
TTTATAAGAATAGAGATAGACCAAAACATACATATCATCGCTAATTTTCCTACTACTGGAGTAGTGCTACGCCGTGGTCT
ACCTGGATCCTGAATGGGATCACGTGAAGTGTTGGCTGATTTGAGCATTGATGATACGGGAGGGGAGT------------
-----------TGGGGGAAGAAGCATTGGAATCGCCGTCGGTGGACGGTGGGCAAAGCCATCATGGCACCGGCACCGATC
GATCTACTATCACCGCTGTTTGATTCATCAATGCTAAGATTCGTCA-CATTCAATTCCTCAGCGGTTGCCCTGCCATCTA
---TTACCAACTACTTCACTAAATACTCAAAAACTAGATGGAGAGAGGGGTAT---------AGATAGATAATTTGGGAC
ACGCACATGAGCTGAGAGCAAGTATAATAGAGCTGAGTCAGCGGGCTATAAGAAATAAATTAGTATATTTCTGCTTAGTT
GAAGGAAAGAGAAGAGGAGAGAAGGTAAACGAACTCTTCATGAAGAGCCAGCTCTATCACGTGCTCCTAGTCACTTTGCG
AGAATGAAAGGTGGGCCACATAATAAAAAAGTAGTACACTCTTTTGATGTACTATTATACATGTTGGCAAGATGGGCTTA
TAGCCAGCAGCTGGCTATACTATTAACCATGCTCTCAGTCTACAAGGCTTGCACGTGTATCTAGATCGTCAATTAAACTT
ACATAAAATAATTTGTTTAACATAAAAATTATATCATTAGAAACTAGAATATCTAAAAAAAATAATGATATATTTTTTGT
AATGCATACCTCTTATTAAGTTGTTCAAATTAATGACCTAGGTACACATGCAAGACTTGTAAACTGAGATAGAGGGAGTA
GATAATTTGGATCGGACAACTAATTTGGGACACACGCATTTAGAGCGTAAAGATTCGAA---------------------
-------------------TTTAAGG---TATTAAACCAAATTTACCCTATCCTTGCTAGCTACTACTTCTGTTTTGGTT
TATAAGTCCTCTTTGTATTTTGTGCCAAATGTTGACTAGTGATAAATTAATAAAATATGAATGCATGTCATCAAAAATTA
TATTGTTGGATTCGTATTTGAATATAGTTATCAATTATATTATTTTTTTATAACATGCATTAACATTTTGATAGTTAAAT
TTAAGATCAAAATTTGACATATAATATAGGAATCCAATAACTCCCGAACGTTCGGATTTTGAGCATTTCGTCCCGAACGT
TTTTACATGGTAACTTTAGTTCATAGGAGATGGCAACTTTAGTTGATAGGGGATGGCAACTTTGTCCTTTTTTGTTTTTT
GTCAGAAAATTGCCATGTTTCCTTAATCTCACGCAAACTAAACTTGCCATCTAAACCTGTTCGGGTTGCCATGCTTAACT
CCCGAATGTTCGGAAGTTATCATTACCGATAATATAAAGAGGACTAACAAACCAGGATAGAGGTAGTATTTATTTGTCTA
AGTACACCG------TAGTATTCCAATCGCCTGGCCACCACATACCGCCGCCGGTGTGCTGCATTGCAGGTGCCAACGAA
ATGCATAAGCCAAATGTAAGCGATA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>chr3B_1
CATGGATCATGGGTTGCATCGGTGGTTCTTC----GTTTCGATTTTCCAAGCTGCTTCGCC----GCAGTGATGGGTGGC
GC----TGGTACCACACGTGCTACAGTTACGGTGCGG----CTGCCGCATTCATTTCGGCATTCATTCGTGGCGAGGAGC
AGCCTGT------------------------AGCGGCGGTGGTGGTACCGTGCCGGAGATCGGGCCGGGTCAGGACGGGC
G----ACGTACTGGACGGACCCGAGCACCACCCCGACCGGCCGGCCCGATGGTTTCAGTAC---GTACAACTGTTGGATT
TGACCGGCCTTAAACTTAACCGAACAAACGATATCTCCCCCGT------AACAGTGGCTCGTTCTGCCAGTGACCGCACC
TGCACGCT----GGCAGATCTGGCACGGAATTGGGCGCTTCGACGGGTCATCATCGGTCATCAGTACTGTGCGTTCATTC
CGTAACA--------GTATGAGATCTCGCTATGTAATGTGTTTTCAGTCTCGGACGGCATGGCACGGCACAGCACGGCCC
GATACGACGCGTCTAATCTGCCGCCCCAACTCTGCAAACTGCAG-------AGACATGTACGTTTGAACTCGCTTCAAAT
TAACAGCCTGGCTGGGCGTGCGTGT--TTGCATGAGGGAAAGAGTGTAACTAGATCTCAGTCAACTAAAACTTAACCATG
TTTAAATCAAATGACATAATATATTAAAGCTAAAATAGAAAATTTGCATGGATCTTCATGTAAGATCCAACGAATATAGT
ATCGATTGAGACTTAGCGTCAAAATGTCTATTAAAAATAGCATTGCACGTAGTTAGCCCATCTAATCAACTATTCTAAAA
AAAAAAGGCCCATCTAATCAACCAATATGGCAAAGTGTGTGGCTAGGTCTCAGAAACTTAAT--------AAGTCTAAAT
CAAATGACATAAAATATAAAAAGAAAAAAATACTGAAATGAAAAATTTAAATGGATCTTCATGTAAGATCCGACTGAGAC
TTAACAATCGCACATGG---------------CAAAATGCCACAATGAAAATAGCACTGCCCGTAGTAGGAAA---TCAC
CAGAACGGGCATGCACGCAGCTCGACCGACCGGTCCATTTCGGCGCACCGCCACAGCACCCACAA----CGGCGGCCCTA
TTTCCGGCTATATATACTCGCGCTCACACATCGGTCATGCGTACTCGACCCTGCCTGCAGTCCCATACTCCATA-CACCA
CCACCTTCCT----CCCAAGCGAACAAAGAC----TC------ATGGCGACTCTGCGGCGGTGCTCCGGGCTGCTGGTCG
CGGTGGTGGCGCTGGCGCTGGCGGCGGGCATGGCGGCGGCGCAGGGGCCGGCCGGCGCGCCGGCGCCGGCTGCCGGGATC
AGCTCCGAGTGCATGACCGCGGTGCTCAACATGTCCGACTGCCTGCCGTACGTGGAGAGCGGGAGCAAGACGCGGCACCC
GGACAAGGCCTGCTGCCCGGAGCTGGACGGCCTGCTGCAGTCCAACCCCGTCTGCCTCTGCCAGCTGCTCGCCGGCGGCG
CCGACTCCTACGGCATCAGCGTCGACTACAAGCGCGCCATGGCGCTGCCCGGCGTCTGCCGCCTCAACGCGCCGCCGCTC
AGCGCCTGCGCAGGTAAT----CCTTCGCTTTTTTTCTGCCGTCGCTTCGCTTGGAGTAAGCTAGTCAGTGATCAAGTA-
--------------------------------------------------------------GCTTAAACTGTACATGGA
CGAAAGGCAGAAGTATTTCACAAGGCTCACTGATCTGTCTACACGGAAAAGAGATTTCATCTTCAAGCGGGCGATAATAA
AACATGGAAACTCGTTAATTATTTACTCATGCCAA--------TCTGTACTCAAGCTGGAGTAGCCTAGTGAAAGAAGTA
GTACGGTC--TTTGTCCAA-------------------CAACCTAATGGC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATGATTTAGCAATCGAATTCCACC
GAATTATCCTCGCAGAAAAGAACACATTGAATTTTGGATGTACTACTACAGTGGCAGTCGTAACTTATTAACAGAGACAA
AAAAAATGCAGCTTTTGGAGTCCCCGTGGGGCCTTCTTCGGCGCCATTAACAGGAGT---CTCTCCATCCGCTACAGGGC
CACAGATGCCTGGTA----AGCCATTGCTACTCTGCCTGCCCTGG----TTCTTCGGTCCTTTTTTACTTCAGCAACTC-
TACTAGTGTTACTTGGCATGATTGCATAATAGATCTTTTACTAGGGAGACATCGGATATATTCAGTCTTTCGCC------
---------TCTTTGAACGAGTGAAATGTTCACATTCGGTCTTTTGATTTTGGCATGTTTATTCAAGCAAAAATGTTTCT
GTACAATAATAACAAGGCAGGCATTTGAGGTACTATTAAGACTTTCAGAGTGAGATAGGGTCCTGAAACAAG--------
--------------------------------------------------------------------------------
---------TCTGCTTACTCTGCTCCACTCTGCCTCCTGCAGAGAACCCGCCATCCGGAACGCCGTCCAAGTCCAAGTCC
CACGCCCCCGGCAGCCTCACCGGCCGCGGTCTCGTCGCCCTCGCCGCCCTACCGCTGGCGTTCACGGCCGCCGCCATGTT
CTAGGGCAGCAAGAGTTCGCGAACGTGTGGCATTGTGCCGGTCTCACACGCTTGGCCCGATGAGATCACATTCTTCTCCA
TTCTTGCCTCACATTCCCATTGC-TGTACACGAGAGATTATTTTTCTGGTTGATCCATT-CCTTGTAATAGTTCCTTTAC
CTGTGTGTAATCTGCTAGAGACGGTTGACATTCTGTGTATTACTACCTACTCCCTCCGTCCTCGAATAAGTGTACTTCTA
CCGTTTTTCCTAAGTCAAAGTTTTATAATTTTGACCAACTTGTTAAAAAAGAGTAGTAGGATTATATGACATCAAATTGG
TATATTATGAAAATACATTTCAGAACGAATCTAGTGATATTAATTTAGTGCCATAAATGGTGCTACTTTTACCTACAAAG
TTGGTCAAAGTTTCAAAACTTTGAGTTAGAACAAAAGCTAGATGTACACTTATTCGCGGACGGAGGAAGTAGTTTGCATT
ATTGCTATCTTTAATTCT-TTTCGTTATGTGTTTTCTTCCTCCTATATATAGACCAAAGTC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ACCAAAGCATACATTAGTACTAGTAGTATC-------------------------------
------------AATGGGATCACGTGAAGTGTTGGCTAATTTGAGCATTGATACGGAAGAACCGAA-------GAATGGT
GGTGTGGTGTGT-GGGGGAGAAGCATTGGAATCGCCGTCGGTGGACGGTGGGCAAAGCCATCATGACACCGGCACCGATC
GATCTTAAGCGCTG-----TTGGTTCATCAATGCTAGGATTCGTCC-CATTCAATTCCTCAACGGCTGCTCTCCCATCTG
---TTACCAACCACGTCACTAATTACTCAAGCGCTACTAGTACTTACTTGAAGAGAGGGGGCAGATAGATAATTTGGGAC
ACGCATATGGGCAGATAC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AGTA
CATAATTTGGATCGGGCAGCTAATTTGGGACACACGCGTTTAGAGCGTGTCTACCGATCCCTCAAAATCGGTTAAAGAAG
TAAAAAAA------TCGATTTTAAGG---GATTAAACCGAATCTAGCCTATCCCTGCTAGCT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ATTTATTTGTCTC
AGCACACCG------TAGTACTGTAATCACCTGGCCGCCACATACCGCCGCCCGTGTGCTGCATTGCAGGTGCCAACACA
ATGCATGAGTCAAATGTAAGCTATAGAGATTTATGTTTA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>SNPs
--------S--------S--SS-S-SSSS-SSSSS----------------------------------S-----S----
-----S-------S-----------------------SSSS-------------S-------------------------
------------------------------------S-----------S--------------------------S----
-----------------------------S-------------------------------SSS----------------
---------------S--S----S------S------S-----SSSSSS-----S----S------S--S----S-----
---S-------S----------------------------------------S----S--------------------S-
-------SSSSSSSS------------S-------------------------------S------S-S-S---------
--------------------S--S----S-------S------SSSSSSSS-----------------------------
-------------------SS----SS-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S-------------------S-----------------S----------------S-S-
S---------S-S-----S--------SS-S--SS----------SSS-----S-S-----S------------------
-S--SSS--S-------SSSS-S-S-SSSSSSSS----S-------------------------S---------------
-S--------------------------------------------------S------------SSSS-----------
-----------------------S-------------------------S-----------------S------------
-----------------------S--------SS----------------------------------------------
-----------S-----------------------------------------------------------------S--
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------------------------------------------S-------------
------------------------------------------S---S-SS--SSSSSSSSS--S--SSSSSS--SSS-SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------S--
----SS---S--------S-----------------------S-------------------------------------
---------------S----------S--------SSSSSSSS-----------S---------------------SSSS
SSSS-SSSSS-------------S-S--------S-S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S-
---------------------------------S--------------S-SSS-SSS----------------------S
S-------------------------------------------------------------------------------
---------------SSSS-------------------S-------------SSSSS-------------S-------SS
-SS-SSS---SSSSSSS--SSS-SSSSS---SSS--S-S------SSS-SS-SS-S-S--SS--S-SSS-SSS--SSSSS
SSS-SS-S-SSSS--S-S-SS-S-SSSS-S--------------------------------------------------
--------------------------S-------S---------------------------------------------
----------S---S--S--S-------S-SS-S------------S--SSS----------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
S------------------------------S----------------------------S-------------------
------------------SSSSSS-------------------------------------------------S------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S----SS-SS--S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S----------S-------S------------------------------
------S------------------------S----------------------------------S-SSSSS-------
-S----SS---------------------S-------------------------------------------------S
------------S---------------------------------S---------------------------------
SSS----------------------------------------S------S--SS-SS----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S----------S-S------------------S------------
--------SSSSSS------------SSS---------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------SSSSSS-----------------------S---------------------------------S-------
-----------------------------S---S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_303
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CCCCGATGGTTTTGGTACGT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>reverse_1438
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TTC
AGCTCGGAGTGCATGAC---------------------------------------------------------------
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----------------------------------------------------------
>forward_540
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TTTTCAGTCTCGGACGGCAC--------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>reverse_2599
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CGCCTTGGTTCTTCAGTCCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------
>forward_2578
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------------GC
CACAGATGCCTGGTAAGT--------------------------------------------------------------
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----------------------------------------------------------
>reverse_6067
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------CGTTGCGAGGTTTG
TGACAA----------------------------------------------------
