>input_sequence_40557
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------------------------------------------------------------------ATGGTCGATAGCTT
GGACTACTCGGTTTGCTTGGAAGCACAAGAGCGCCCTAGGTACGAACTTACCGGGCAGAGGATGAAGAGGACTGAGGCTG
AATCGACTGACCTGGACCGCAGCATGCACGGCGGCGGCAGCGGCAGCAGGGTGTCCGGCGGCTACAACGACTACTGGAAC
TGGAGCCCCCCGGACACCGGATACTCGAGCTCCCCAGTGGTGTCGGCGGCGGTGTCGGCGAGCAAGAGCAACGTCGTCGT
CACGAGGAGGCTACGCGGCCGGACGCTCAACGGCAAGCTCTACGCCCTCCGGAGCGTCGTCCCAAACATCACCAAGGTAC
GCACGTACGTGCCAACGAGCAACCAACTCAATTCACTTGGCATGCAGGCGGCAGTTC-----------AAACATTAACCA
TTCTTCCTGGCAGATGGATAAGGTGTCCATCCTCAGGGACGCCGTCGAGTACATCCAGCAGCTGCAGGAGCAGGAGCGCT
GGATGCTCGCCGAGATATCCATCCTTGAGTCGGTGGCGGAGGTACATGGCCATGGCCAGCTGCTTACTGCTACACTACAG
CCCGTCCTTCCGAACGGCTGCGCCGGACACGCCATGCCGCCGCTGAAGAAAACGAGGACCCATT---CATTATCGCCGGC
GGTGACCCCCACCCCCGCATCCGCCAT-------GGCAGCCGCATCTCCGCCGGTCGAGGCTGTCGAGGTAAACGCACCC
ACCAACGTACTTTATCTATTTAATCATCAAGTAATAATTGCGAC-GATGACAAGCGACCGGCAGACGGGGCCCTGCCCTG
ATGTTGACGCCATGGTCCTCCGATCTTGAGCGGCATCGTCTGCTCTACCCGCCCGCCGCACGCGGACACCGACCACTTGG
CTCGATCTTGTAGTACTTACTTTCGGTTCGTTACATGGACAGGTGAGGGTGACGGGCGCTGGCGATAAGCTGCTGGTGGT
GAGCGTCGCGTGCCGCCACCGGAAGGACGCCATGGGCAAGGTGTGCCGCGCGCTCCAGAGCCTCCGGCTCGCCGTCATCT
CGGCTAACGTCACGGTTGCGTCCGGGACGGTGACGCACACCGCGCTCCTACAGGTAGTAATTGTGTCCTTCCTCAAAACT
TGTGTTATCAAACGTTCTAGAGTTTCATAAGAAAA---------------------------AAAACTT-----------
--------------------------TCATGAAGAAGGGTTTTTTAGTTCCAGTAGAATTTCATCAAAATTTCAGTCATT
TTGGTAGAATACTAAAATGATTATCTTTTGGTCAAAATATTCCAGCCATTACAACACACACAATTTAATTTTTTT-----
-------TAAATACTTGGTTTGATTTTTGTCACATTCAAGTAGATATTCTGGTCCTTAATTTGGCAAAACCGAAATCATT
TAAAGTTCGGTGATAATGGCTACGACTGAGATATTTCTGAAACAGAAATTCAAAACCAATCATAATTAGCCATATAAAGT
TACTATGTATTCTAGACTTTATATTATTATCTTCCTATGGCCAGTT-T-----TTTTGGGCGGCTTAAAAATTATGTTGC
CTTTCCTCAGCTTACGAAATAAGTCATCCCCTAACTTTGTTGAGATTTTTGAATTAGTTATCGTATAACTAGTTTAGGAA
CCCC-AATGGATTAGAGAGGCGGCTTATTAAAAAAGTTGGGGAGGGGATGGCTTACTTTCTAAGCTGTTAAAAGAACTGG
CCTTTAATATTATTACTAGTCAACTAATACATCCTAATGTAAAGTCGAGAAATGTAATAGATATAGAGTCTTGAAGAATT
TAAATATAATAAAACAATTGTCAAGTCAAAAGAGCATGCATGGCGGTCATTGTGCTGCTGGTTATAGTTGCATTGTTTTG
TGATTACATAATTCTTATTTCTCAGAGACAGGAAATACATAAGAGCGAGATGAAGGAATTGATCGAGACTGCAATCGCCC
ATGTTGATGTCGCAGGAAGTACTCTA---------------------------GGGAAGTTATGA---------------
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>chr3A_1_TraesCS3A01G442600
ACCATCACTTATATCCTGGTCATCCAAGCGGCAGCCCACAGTCTCTCGGTCTGGTGCCGAGGCTGAATATCGTTCCATGG
CCAACATCTTTGCTAAGTGATGCTGGCTTCGGCAACTTCTCTACGAGCTCTCTTCTCCTGTTGACAAGGCCACCG-TTAT
GTATTGCAACAACGTCTCTGCCGTTTACCTCTCCGCCAACTTTGTTCATCATCGCGACACCAAACATATTGAGTTGAATA
TCTACTTTGTTCGCGGGCAGGTGGCTCTTGGTCACCTTTGACTTCTTCACGTGC-------CTACCTCTCAGCAGCTTGC
GGATATCATGACGAAGGGGTTGCCAACGTCAGTTTTCGAGGAGTTTCGGTCCAGTCTGCGCGTCAGTGCCGACGCTTCGA
CTGTGGAT---------GGGTGTTGAGCGACCTATGTATTCGTATATACACATGTACTCTAATCTCCGTCTATCTCATTA
GGGTTTAGTCCTGGACGTGATGATCTTCCTGTATGTACATCTCTATATATCGGCACTGGATGCCCGTGAATACATGTGTG
TTGCATCCTATTATTTGTCTATATATATGCTCACATACATAAATACACTCATCTTATGAATGCACGCATTACACGTCCGA
TCTTTATAAGCACATCTCAGATACTAAGTCGGCACAACATCTTAAGATTGAGAAATGTCTATCCCTTCCTGACAGTCTCA
TGTGTCCACATTCACAACTTCAATGCCAAGCCAACCCATCGAGATCTACTACAATTTTGTTTCCACTAGTACAATCACAA
TGTAAATCTGCTGAGGATGATTCCTGGACCCCCAACCCCAT----CCCTGCTTGGATCATATATCCATGAAAAAGAAAAA
AGAAACAAACAAATAC-TACTCGGTTTGCCTGGCAACAAGGGAATAGACGGTGGATAGTGACAAAATCAAAGATATACAT
CATCCAAAACTGGGGAA---TAAGGGGATAGACGATGGATCCAGATACACGCATACGGCT-CAGGGATGGTCGATAGCTT
GGACTACTCGGTTTGCTTGGAAGCACAAGAGCGCCCTAGGTACGAACTTACCGGGCAGAGGATGAAGAGGACTGAGGCTG
AATCGACTGACCTGGACCGCAGCATGCACGGCGGCGGCAGCGGCAGCAGGGTGTCCGGCGGCTACAACGACTACTGGAAC
TGGAGCCCCCCGGACACCGGATACTCGAGCTCCCCAGTGGTGTCGGCGGCGGTGTCGGCGAGCAAGAGCAACGTCGTCGT
CACGAGGAGGCTACGCGGCCGGACGCTCAACGGCAAGCTCTACGCCCTCCGGAGCGTCGTCCCAAACATCACCAAGGTAC
GCACGTACGTGCCAACGAGCAACCAACTCAATTCACTTGGCATGCAGGCGGCAGTTC-----------AAACATTAACCA
TTCTTCCTGGCAGATGGATAAGGTGTCCATCCTCAGGGACGCCGTCGAGTACATCCAGCAGCTGCAGGAGCAGGAGCGCT
GGATGCTCGCCGAGATATCCATCCTTGAGTCGGTGGCGGAGGTACATGGCCATGGCCAGCTGCTTACTGCTACACTACAG
CCCGTCCTTCCGAACGGCTGCGCCGGACACGCCATGCCGCCGCTGAAGAAAACGAGGACCCATT---CATTATCGCCGGC
GGTGACCCCCACCCCCGCATCCGCCAT-------GGCAGCCGCATCTCCGCCGGTCGAGGCTGTCGAGGTAAACGCACCC
ACCAACGTACTTTATCTATTTAATCATCAAGTAATAATTGCGAC-GATGACAAGCGACCGGCAGACGGGGCCCTGCCCTG
ATGTTGACGCCATGGTCCTCCGATCTTGAGCGGCATCGTCTGCTCTACCCGCCCGCCGCACGCGGACACCGACCACTTGG
CTCGATCTTGTAGTACTTACTTTCGGTTCGTTACATGGACAGGTGAGGGTGACGGGCGCTGGCGATAAGCTGCTGGTGGT
GAGCGTCGCGTGCCGCCACCGGAAGGACGCCATGGGCAAGGTGTGCCGCGCGCTCCAGAGCCTCCGGCTCGCCGTCATCT
CGGCTAACGTCACGGTTGCGTCCGGGACGGTGACGCACACCGCGCTCCTACAGGTAGTAATTGTGTCCTTCCTCAAAACT
TGTGTTATCAAACGTTCTAGAGTTTCATAAGAAAA---------------------------AAAACTT-----------
--------------------------TCATGAAGAAGGGTTTTTTAGTTCCAGTAGAATTTCATCAAAATTTCAGTCATT
TTGGTAGAATACTAAAATGATTATCTTTTGGTCAAAATATTCCAGCCATTACAACACACACAATTTAATTTTTTT-----
-------TAAATACTTGGTTTGATTTTTGTCACATTCAAGTAGATATTCTGGTCCTTAATTTGGCAAAACCGAAATCATT
TAAAGTTCGGTGATAATGGCTACGACTGAGATATTTCTGAAACAGAAATTCAAAACCAATCATAATTAGCCATATAAAGT
TACTATGTATTCTAGACTTTATATTATTATCTTCCTATGGCCAGTT-T-----TTTTGGGCGGCTTAAAAATTATGTTGC
CTTTCCTCAGCTTACGAAATAAGTCATCCCCTAACTTTGTTGAGATTTTTGAATTAGTTATCGTATAACTAGTTTAGGAA
CCCC-AATGGATTAGAGAGGCGGCTTATTAAAAAAGTTGGGGAGGGGATGGCTTACTTTCTAAGCTGTTAAAAGAACTGG
CCTTTAATATTATTACTAGTCAACTAATACATCCTAATGTAAAGTCGAGAAATGTAATAGATATAGAGTCTTGAAGAATT
TAAATATAATAAAACAATTGTCAAGTCAAAAGAGCATGCATGGCGGTCATTGTGCTGCTGGTTATAGTTGCATTGTTTTG
TGATTACATAATTCTTATTTCTCAGAGACAGGAAATACATAAGAGCGAGATGAAGGAATTGATCGAGACTGCAATCGCCC
ATGTTGATGTCGCAGGAAGTACTCTA---------------------------GGGAAGTTATGATATGCATGGTTGCAT
GTTCATCTTAGTTAGTTACACATGATCACATGTACTCCAGGATAACCAGAACACTATAGTGTTCTGGC---AAAAATGGA
AAGAGAATAAACATTATTTAGCAGCCCCATTGTGTTTGTCTCGTGGTCAGATACTAAGCAATAACCTCCTATAACACGTG
ATATCCATTGGATCACACAAAATAAATAGCTCGTGCTAGGAGTGTCTCAAAATGCCAATATGATGTACTATATACGTTGT
ATCTAAACTATTGCACTTTTGGTCAAAAAGAATATGACTATTGGTTCTTCACATTTGCTGGTCTATTCATAGGATACAGC
TTTCTCACCACCTCTCTGTATTTTTATGTCAGTTTTTATGTAGGTGCCTGGCTATAGATATTGATGGATAGTGCTATAGG
CTTGTGAATATATA------------------------------------------------------------------
--------------------------------------TATGGATTTAAAACTATCGACATTGGCTATATATGAAGTTAC
GTTGTACTATTATATTTGGAATGGTTCT-CTTCGTAATATTATTAGTCTACTAATGTCTTAATGTAAAGTTGA--ATATA
ATAGTTGTAGCATCTCAAACACTTCAAATAAAAAT---------------------------------------------
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------------GCGCGGTGACAAGCAAGAAAGGATGAATGGAAAATGGAGGCGCCACAACCAAAGATGGGTGGCAACCT
CCGGCGAACACTTTGCACAATGCGGTTTTCCCAAATAATCCAATTTCACTTCTTTTTTCCGCTCCGCGCCTCATGCCGGG
CCAAGCTGCGACTTGTTTTCTACCTAGTTCTTGTCGTATTTCCTGGTACCGCCTCCATCTATGGGCCAGATTTTATTTGC
CCCCCTCTCCCTATTGCCAACTCAATGACCCATACAATTTTATAGACCGTGATCCATTCACTGAAATGCACAACAATCGT
CACATCCATCGATCGGAACCACGCACTTTCTGCCGGTGAAGCCCTCGGCCATGCAGATGTTCGGACAGTTGGTGTCGCTG
AAGCACGCCCCATGGAACTGGTGGCCCTTCGA
>chr5B_1
ACCATCACTTATCTCCTGGTCGTCCAAGAGGCAGCCCATAGTCTCTCAGTCTAGTGCCGAGGCTAAGTATCATGCCATGT
CTAACGTCGTTGCTGAGTGCTCCTGGCTTCGACACCTTCTCTACGAGCTCTCTTGTCCTGTCGACAAGGCCACCA-TTGT
GTATCGCGACAATGTCTCTACCGTCTACCTCTCCGCCAACCCCGTTCTCATCA--CGTACCAAACATATTGAGTTGGATA
TCCATTTTGTACACGAGCAGGTTGCTCTTGGTCATGTTCGAGTTCTTCACGTGC-------CTACTTCTCAGCAGTTTGC
GGATATCATGACAAAGGGGTTGCAGACGTCGGTTTCCGATGAGTTTCGGTGCAGTCTGCGTGTCAGTGCCGACGCTTCGA
CTGCAGGGGGGGGGGG-GAGGGGTGAGCGACCTATGTATTCGTATATACACATGTATTGTAATCTCCGTCCATCTCATTA
GGGTTTAGTCCTGGACGTGATGATCGCCCTGTACA------TTTATATATTGGCACTAGATGCCTGTGAATATACGTGTG
TTGCATCATATTGTCTCTCTA-----------------------------------------------------------
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>chr7A_1
ACTATCACTTATCTGTTGGCCGTCCAAGCGACGACCCACAGTTTCTCGGTCCAGTGTTGAGGTTGAGTATCGTGCCGTGG
CTAACGTTGTTGTTGAGTGCTTATGGCTTCTACAACTTCTCTAAGAGCTCTCTTGTCCCGCCGATAAGGCCACCATTTGT
GTATTGCGACAACGTTTGTGCCATCTACCTCTCTGACAACCCCGTTCATCATCGCCGCACCAAACATATTGAGCTGGATA
TCCACTTTGTTCGCGAGCAGGTGGCTCTTGGTCACGTTCGAGTTCTTCACATGCCTACGACCTACCTCTCAATAGTTTGC
GGATATCATGACAAAGGGGTTGTCGGCGTTGGTTTTCGAGGAGTTTCGGTCCAGTCTGTGCGTTAGTGCCGACGCTTCGA
CTGCCGGGGGAGGGGGCGGGGGTTGAGCGACCTATGTATTCGTATATACACATGCACTATAATCTGCATCCATTTTATTA
GGGTTTAGTCCTAGACGTGATGATTTTCCTGTACA------TCTATATATTGACACTGGATACCCGTGAA-ACGTGTGTG
TTGTATCCTAT---------------------------------------------------------------------
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>chr5D_27
--------------------------AGCGGCGGCCCACGGTCTCTCGGTCTAGTGCCGAGGCTAAGTATCGTGTCGTGG
CTAACGTCGTTGCTGAGTGCTCCTGGCTTCGGCAACTTCTCTATGAGCTCTCTTGTCCTGTTGGCAAGGCCACCG-TTGT
GTATTGCGACAACGTCTCTGCCGTCTACCTCTAAGCCAACCACGTTCACCATTGCCGTACCAAACATATTGAGCTGGATA
TCCACTTTGTTCCGGAGCAGGTGGCTCTTGGCCACGTTCGAGTTCTTCACGTGC-------CTACCTCTCAGCAGCTTGC
GGATATCATGACGAAGGGGTTGCCGATGTCAGTTTTTGAGGAGTTTTGGTTCAGTCTTTGCGTCGGTGCCGATGCTTTGA
CTGCGCGCGGGGGGGG-GGGTGTTGAGCAACCTATGTATTCGTATATACACATGTACTCTAATCTCCGCCCATCTCATTA
GGGTTTAGTTCTGGACGTGATGATCACCCTGTACA------TCT-TATATTGGCACTAGATGCCTGTGAATATACGCGTG
TTGCATCCTATT--------------------------------------------------------------------
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>chr3D_678
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------------------------------------------------------ATGTCTATCCCTTTCTCACAGTTTCT
TGTATCCGCATTCACAACCTCACTGGCACTGCAACCCATCGAGATCTACTACAATTTTGTTTCCACCAGTACAATGACAA
TGTAAATCTGCTGAGGATGATTCCTGGACCCCCAACCCCGGCCACCCCTGCTTGGATCATGTATCCATGAAAAAGAAAAA
AGAAACAAACAAGTAAGTACTCGGGTTGCCTGGCAACAAGGGAATAGACGGTGGATAGTGACAAGATCAAAGATATGCAT
CATCCAAAACTGGGGAATAATAAGGGGATAGACGATGGATCCAGATACACGCATACGGCTGCAGGGATGGGCGATAGCTT
GGACTACTCGGTTTGCTTGGAAGCACAAGAGCGCCCTAGGTACGAACTTACCGGACAGAGGATGAAGAGGACTCAGGCTG
AATCGACTGACCTGGACTGCAGCATGCACGGCGGCGGCAGGGGCAGCAGGGTGTCCGGCGGCTACAACGGTTACTGGAAT
TGGAGCTCCCCGGACACCGGATACTCGAGCTCCCCCGTGGTGTCGGCGGCGGTGTCGGCGAGCAAGAGCAACGTCGTCGT
CACGAGGAGGCTACGCGGCCGGACGCTCAACGGCAAGCTCTACACCCTCCGGAGCGTCGTCCCAAACATCACCAAGGTGC
GTACGTAGCTGCCAACGAGCAAG---CTCAATTCACTTGGCATGCATGTGAGATGTGCTAGTTGAATGAAACACCGACCA
TTCTTCCTGGCAGATGGATAAGGTGTCCATCCTCAGGGACGCCATCGAGTACATCCATCAGCTGCAGGAGCAGGAGCGCC
GGATGCTCGCCGAGATATCCCTCCTTGAGTCGGCGGCGGAGGTACATGGCCATGCCCAGCTGCTTGCTGCTACACTACAG
CCCGTCCTTCCTAACGGCTGCGCCGGACACGCCATGCCGCCGGTGAAGAAAACGAGGGGCCCCCTGTCATTCCCGTCCGC
GGTGACCCCCGCCCCCGCATCCGCCAT-------GGCCGTCGCATCTCCGCCGGTCGAGATTGTCGAGGTAAACGCACCC
ACCAACGTACTTTATCTATTTAATCATCAAGCAATAATTGCGAAAGGTGACAAGCGACCGGCAGACAGGGGCCTCCCCCG
ATGTTGACGCCATGGTCCTCCGATCTCGAGCGGCATCGTCTGCTCTGCCCGCCCGCCGCACGCGGACAGCGAACACTTGG
CTCGATCTTGTAGTACTTACTTTCGGTTCGTTACATGGACAGGTGAGGGTGACGGGCGCTGGCGATAAGCTGCTGGTGGT
GAGCGTCGCGTGCCGCCACCGGAAGGACGCCATGGCCAAGGTGTGCCGCGCGTTCGAGAGCCTCCGGCTCGCCGTCATCT
CGGCTAACGTCACGGTTGCGTCCGGGACGGTGACGCACACCGCGCTCCTACAGGTAGTAATTGTGTCCTTCGCCAAAACT
TCTGTTGTCAAACTTTCTAGAGTTTCATAAGAAAA---------------------------AAAACTTCCTAGAGATTA
ACCGCGCGTCAACAGATTTAAAACTGTCATCAAGAAGGGATTTTTAGTTTCACTAGAATTTCGTCAAAATTTCAGTCATT
TTGGTAGAATACTAAAATGATTATCTTTTGGTCAAAATATTTCATCCATTACAACACACCATGCAATTTTAAATTATTTT
AAAAAAATTATAAATACT--------------------------------------------------------------
----------------TGGCTACGACTGAGATATTTCTGAAACATAAATCCAAAACCAATCATGATTAGCCGTATAAAGT
TACTCTGTATTCTAGAATTGATATTATTATCTTCCCATGTCCAGTTCT-----TTTTGGGCGGCTTAAAATTTATGCTGC
CTTTCCTTAGCTTACAAAATAAGCCGTCCCCTAAGTTTGTTGAGACTTCTGAATTAGTTATCTCATAACTAGTTTAGAAA
CCCC-AATGAATAAGAGAAGCGGCTTATTAAAAAAGCTGGGGAGGAGGCGGCTTACTTCCTAAGCTGTCAAAAGAACTGG
CCCCTAATATTATTACTAGTCTACTAATACATCCTAATGTAAAGTTGAGGAAGATAATAGATATAGGATCTTGAAGAATT
TAAATATAATAAAACAATTGTCAAGTCAAAAGAACATGCATAGCGGTCATTGTATTGCTGGTTATAGTTGTATTGTTTTG
TGATCACATAATTCTTATTTCTCAGAGACAGGAAATACATAAGAGCGAAATGAAGGGATTGATCGAGACTGCAATCGCCC
ATGTTGATGTCGCAGGA---------AGTAGTATTAGTTACTAAGTGACTCATGGGAACTTACGATATTCATGGTTGCAT
GTTCATCTTAGTTAGTTACGCATGATCACGTGTACTCCAGGATAACCAGAACACTATAGTGTTTTGGC---AAAAATGGA
AAGAGACTAAATATTATTTAGC-GCCCCACTGTGTTTGTCTCATGGTCAGTTAATAAGCAATAACCTCTTATAACATGTG
ATATCTATTGGATCACACAAAATAAATTGCTCGTGCTAGGAGTGTCTCAAAATGCCAATATGATGTACTATATATGTTGT
ATCTAAACTATTGCACTTTTGGTCAAAAAGAATATGACTATTGGTTCTTCACATTTGCTGGTCTATTCATAGGATACAGC
TTTCTCACCACCTGTCCGTATTTTTATGTCAGTTTTTATGTAGGTGCCTGCCTAAA-ATATTGATGGATAGTGCTATAGG
CTTCTGAATATATGGGTTAACCACCTCCAGTCTTTCACTTGAAATCTTACAACTTGCATTGTCTTTTTTTTTCCGGGTCA
CAACTTGCATTGTCAAAGTTAATAGAATTTAAACTACCTATGGATTTAAAACTATCGAGATTGGCTATGTATGAAGTTAC
TTTGTACTATTATATTTGGAATGGTTCT-CTTCGTAATATTATTAGTCTACTAATATCTTAATGTAAAGTTGA--ATATA
ATTGTTGTAGCATCTCAAACACTTCAAATAAAAATAATTAATTGTTAGGTAAAAGGAACATTTG-TATCATGTGGATTGC
AAATTTTGCGTATTCCCGCAATCATTTATTAAGATAATTTAGCATGTGTTGCGCATCTGGGAACTGGTTACTCAGAATAA
TATCTGCAACAAGTTATATGCTCATAAATTACAGCATATGACCATAATAAATAGTGTTGCATATTGTTGGATGTTGCCCC
CATCCGCCTCTTGCAAATCTGTCGGTGGGCCCTAGCGAGAGG----------------AGGTCACGACTTCGGTCTCCAC
CCAACCTGGAAGGCAGGGTGACAAGCAAGAAAGGATGAATGGAAAATGGAGGCGCCACAACCAAAGACGGACGGCAACCT
CCGGCGAACACTTTGCACAATGCAGTTTTCCCAAATAATCCAATTTCGCTTC-TTTTTCCACTCCGCGCCTCATGCCGGG
CCAAGCTGCGGCTTGTTTTCTACCTAGTTCTAGGCATATTTCCTGGTATCGCCTCAATCTATGGGCCAGATTTTATTTGG
-CCCCTCTCCTTATTGCCAACTCAATAACCCATACAATTTTATAGACCGTGATCCATTGACTGGAATGCACAACAATCGT
CACATCCATCGACCGGAGCCACGCACTTGCCGCCGGTGAAGCCCTCGGTCATGCAGACGTTCACACAGTTGGTGTCGCTG
AAGCACGCCCCATGGAACGGGTGGCTCTTTGA
>chr3D_892
CAACA---------------------------------------------------------------------------
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-------------------------------------AAGGGAATAGACGGTGGATAGTGACAAGATCAAAGATATGCAT
CATCCAAAACTGGGGAATAATAAGGGGATAGACGATGGATCCAGATACACGCATACGGCTGCAGGGATGGGCGATAGCTT
GGACTACTCGGTTTGCTTGGAAGCACAAGAGCGCCCTAGGTACGAACTTACCGGACAGAGGATGAAGAGGACTGAGGCTG
AACCGACTGACCTGGACTGCAGCATGCACGGCGGCGGCAGCGGCAGCAGGGTGTCCGGCGGCTACAACGGTTACTGGAAC
TGGAGCTCCCCGGACACCGGATACTCGAGCTCCCCCGTGGTGTCGGCGGCGGTGTCGGCGAGCAAGAGCAACGTCGTCGT
GACGAGGAGGCTACGCGGCCAGACGCTCAACGGCAAGCTCTACGCCCTCCGGAGCGTCGTCCCAAACATCACCAAGGTGC
GTACGTAGCTGCCAAGGAGCAAG---CTCAATTCACTTGGCATGCATGTGAGATGTGCTAGTTGAATGAAACACCAACCA
TTCTTTCTGGCAGATGGATAAGGTGTCCATCCTCAGGGACGCCGTCGAGTACATGCAGCAGCTGCAGGAGCAGGAGCGCC
GGATGCTCGCCGAGATATCCCTCCTTGAGTCGGCAGCGGAGGTACATGGCCATGCCCAGCTGCTTACTGCTACACTACAG
CCCGTCCTTCCGAACGCCTGCGCCGGACACGCCATGCCGCCGATGAAGAAAACGAGGAGGCCCCTGCCATTCCCGTCGCC
GGTGACCCCCGCCCCCGCATCCGCCACGGCCCACGGCCGCCGCATCTCCGCCGGTCGAGGCTGTCGAGGTAAACGCACGC
ACCCACGTACTTTATCTATTTAATCATCAAGTAATAATTGCGAAAGATGACAAGCGACCGGCAGAAGGGGGCCTGCCCTG
ATGTTGACGCCATG-------------------------------------------GCACGCGGACACCGACCACTTGG
CTCGATCTTGTAGTACTTACTTTCGGTTCGTTACATGGACAGGTGAGGGTGACGGGCGCTGGCGATAAGCTGCTGGTGGT
GAGCGTCGCGTGCCGCCACCGGAAGGACGCCATGGCCAAGGTGTGCCGTCTGCTCCAGAGCCTCCGGCTCGCCATCATCT
CGGCTAACGTCACGGTTGCGTCCGGGACGGTGACGCACACCGCGCTCCTACAGGTAGTAATTGTGTCCTTCGCCAAAACT
TGTGTTGTCAAACTTTCTAGAGTTCCATATGCCCGGAAAAAAAAGAGTTTCATAAGAAAAGAAAAACTTCCTAGAAATTA
AGCGCGCGTCAACAGATTTAAAACTGTCATGAAGAAGGGATTTTTAGTTTCGGTAGAATTTCATCAAAATTTCAGTCATT
TTGGTAGAATACTAAAATGATTATCTTTTGGTCAAAATATTTCAGCCATTACAACACACCGTGCAATTTAAAATTATTTA
AAAAAAATAAATACTTGGTTTGATTTTTGTCACATTCAAGTAGATATTTTGGTTCTTAATTTGGCCAAACCGAATTCATT
TGAAGTTCGGTGATAATGGCTATGACTGAGATATTTCTGAAACGGAAATTCAGAACCAATCATAATTAGCCATATAAAGT
TACTCTGTATTCTAGACTTTATATTATTCTCTTCCTATATATGGCCAGTTCTCTTTTGGGCGGCTTAAAAATTATGTTGC
CTTTCCTCAG-TTACAAAATAATCCGTCCCCTAAGTTTGTTGAGACTTCTGAATTAGTTATCTCATAACTAATTTAGTAA
CCCCCAATGAATAAGACAGGTGGCTTACTAAAAAAGCTGAGGAGGAGGCGGCTTACTTTCTAGGCTGCCAAAAGAATTGG
CCCCTAATATTATTAGT-GTCTATTTATACATCCTAATGTAAAGTCCAGAAAGGTAATAGATATATGATCTCGAAGAATT
TAAATATAATAAAACAATTGTCGAGTCAAAAGAACATGCAAAGTGGTAATTGTGTTGCTGGTTATAGTTGTATTGTTTTG
TGATTACATAATTCTCATTTCTCAGAGACAGGAAATACATAAGAGCGAAATGAAGGAATTGATCGAGACTGCAATCGCCC
ATGTTGATGTAGCGGGAAGTACTCTGAGTAGTATGAGTTAC----TGACTCATGGGAAGTTATGATATGCATGGTCGTAT
GTTCATCTTAGTTAGTTACACATGATCACGTGTACTCCAGGATAACCAGAACACTATAGTGTTTTGGGAAAAAAAATGGA
AAGAGACTAAATATTATTTAGCAGCCCCACTATGTTTGTCTCGCGGTCAGTTAATAAGCAATAACCTCTTATAACACGTG
ATATCCATTGGATCACACAAAATAAATAGCTCGTGCTAGGAGTGTCTCAAAATGCCAATATGATGTACTATA----TTGT
ATCTAAACTATTGCATTTTTGGTCAAAAAGAATATGACTATTGGTTCTTCAAATTTGCTGGTCTATTCATAGGATACAAC
TTTCTCACCACGTCTTCGTATTTTCATGTCACTTTTTATGTAGGTTCCCG-CTATA-ATATTTATGGGTAGTGTTATAGG
CTTGTGAATATACCAGTTAACTACCTCTAGTTTTTCACTTGAAATCTTACAACTTGCATTGTCTTTCTGTTGTGGGAT-A
CAACTTGCATTGTCAAACTTAATAGAATTTAAACTACCTATGGATTTAAAACTATCGAGGTTGGCTATATGTGAAGTTAC
TTTGTACTATTATATTTGGAAATTGTTCCCTTCGTAATATTATTAGTCTACTAACATCTTAATGTAAAGCTGAATATGTA
ATAGTTGTAGCATCTCGAACACTCCAAATAAAAATAATTAATTCTCAAGTAAAAGGAGCATTTGATATCATGTGGATTGC
AATTTTTGCGTATTCCTGTAATCATTTATTAAGATAACTTAGCTTGTGTTGCGCATCTGGGAACTGGTTACTCAGAATAA
TATCTGCAACAATTTCTGTGCTCATAAATTAGAGCATATGACCAATATAAATAGTATTGTGTATTGTTGCATGTTGCCCC
CATGCGCCTCTTGCAAATCTGTTGGTGGGCCCTGGCGAGAGGGTTGAGGGGCGAGAGGAGGTCAAGACCTCGGTCTCCAC
GCAACCTGGAAGGCGCGGTGACGAGCATGAAAGGATGAATGGAAAATGGAGCCGCCACAACTAAAGACAGACGGCAACCT
CCGGCGAACACTTTGCACAATGCAGT------------------------------------------------------
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>SNPs
------------S--------S------------------------------S-------------S------S------
-S---S--S-----S----S-S--------------------------------S-----------------------S-
-------S----------------S---------------SSS------------SS-------------------S---
--S------------S-------------------S--S--S--------------------------------------
------------------------S-------------------------------------------------------
---S--SS--------------------------------------------------------------S---------
---------------------------------SSSSSSSS---------S-----------------------------
------------S-S-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--S-----S--S
---S---S----------S---S--S--SSS-----------------------------------S--------S----
---------------------------------------SS-------------------S-------------------
------------S--S--------S---------------------------------------S-----------S---
----------------------------------------------------------------------S---------
------------------------------------------------------S-------------------------
-----------------S---------------------------------------------------SS---------
------S----------------------------S--------------------------------------------
------------------------------------------------------------------------------S-
-S-----SS-------------SSSS--------------------S-S-SS-SS-S----------------SS-----
-------------------------------------------------------------------------------S
--------------------S------------S--------------------S-------------------------
------------------------------------------S---------------S--SSS-------SS--S----
----------S--------------------------S------------------------------------------
-------------------------------------------S--------------------------S---------
--------------------------S-------------------S---------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-----------------------------------------------------------------------SS-------
------S------S------------------------------------------------------------------
---------------------------------------S---------S------------------------------
-----------------------------------------S-----------------SSSSSSSSS--SSS-------
------------------------------------------------S----S-----------S--------S-----
-S------------------------------------------------------------------------------
----S----------------------------------S----------------------------------------
---------------S-------S-S--------S----------S--S-------------SS-------------S--
---------S--S-----------------------S--------S-SS-------------------S-----------
--SS-----------------S------------------------------S-------------SS------------
---------------------------------S-------S------------S---------------S---------
------------------------------------------------S-------------------------------
-------------------------S------------------------------------------------------
-----------------------------S---------------------------------S----------------
------S----S-----------------S--------------------S--S--------------S-----------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
----------------S---------------------------------S-----S-----------------------
-------------S------------------------------------------------------------------
----------------------------------------------------------S---------------------
S------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------S--SS--------
-----------------------S-----------------------S----S-------S-------------------
----------S--------------------S-S-S------------S------S-----------------------S
S---------S---------------S-------------------------------S----S----------------
------------S----S----------S-S-----------------S--------S----SS----------------
------------------S------S---S--
>forward_201
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CGTTTACCTCTCCGCCAACT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>reverse_1520
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
GGATGCTCGCCGAGATATC-------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------
>forward_1207
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-------------------------------------------------------------------CGACTACTGGAAC
TGGAGCC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2757
--------------------------------------------------------------------------------
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------------------------------------TTGGGGAGGGGATGGCTTA-------------------------
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--------------------------------
>forward_1409
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-----------------------------AATTCACTTGGCATGCAGGC-------------------------------
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>reverse_2914
--------------------------------------------------------------------------------
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---------------------------------GCATGCATGGCGGTCATTG----------------------------
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--------------------------------
>forward_1435
--------------------------------------------------------------------------------
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-------------------------------------------------------CAGGCGGCAGTTCAAACATT-----
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--------------------------------
>reverse_3230
--------------------------------------------------------------------------------
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-----------------------------TTGTGTTTGTCTCGTGGTCAGA-----------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------
