>input_sequence_40548
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-----------CTATAAAACGACTTCACTACTTGACATCTCCGTCTCTCATTAATCCAACTCTCCAACTTGTCAAGCTTC
ATAAACTGGCTTAGTCTCCGCCCCTCTCTGTCTCTAGAACTAGAAAAAGGAGAAGAGAACATGGCGTCATGGTCATCGTC
GTCCACGCAGCGGAGCAGCGGCGCGACCATGCCGTGCTCCGTGGTAAAGCTCGACGACGACCTGCTGCGCCACGAGGAGG
AGGCCGCCGAGGAGATCCGGCGCGGCCCGTGGACCGTGGAGGAGGACCTCACACTCGTCAACTACATCGCCGACCACGGC
GACGGCCGCTGGAACTCCCTCGCCCGCGCCGCCGGTACGTCCGCCTGCAGCCGG-----------------CCTCCGGCC
TTGCAGATTGACTTTTCAATTGATTCTTGATTTGAGCCTGCTCTGAAGTATGAACTGACCGTGGATCCATGCATGCTGGT
GCAGGGCTGAAGCGGACGGGGAAGAGCTGCCGGCTGCGGTGGCTGAACTACCTCCGGCCGGACGTGAAGCGCGGCAACTT
CACCGCCGACGAGCAGCTGCTCATCCTCGACCTCCACTCCCGCTGGGGCAACAGGTAATTACCAATAATCAAACGTCGCA
TGTCATGCACACCGTGCATACAGTAGTAACCGGCCAGTACAGCCAGCTAGCTCCAAGTCCAACCTAGC----TAGCTAGC
TAGATGTGGACTAGCTTGCACGTCAAATCAAA-----AGCCTCCAGCTAGCTCCATCGGATGGCACACTTCAGATTGTAC
AAGTCTGGCTACCTAAACGGGAATAGGATGCATATGGGTTGCAGCATGGCCACATGCACCATATGCCTATGCCTTTCTCT
TTCACCTCACATACGGTGCATCAAAGCTGCACGCCTCTTCTATCTTTCTCTTCACCAAAGATTTGGAGAGTACTACCAAT
CTAGCTGTCTCTAATTATTGCTTCGTTAGATTTCATGTTTTTTTTTCAAACAAATTATTCCCTCCGTAAAGAAATATAAG
CTAAAGCTCTTATATTTCTTTATGGAGTGAGTATTTATTACTAATTCATTATAGAGTTGATTACTTAATTATAGTTCATT
TTCTCCACATGGACGTAGTGTATATCACACACTCCTACTAGAGTTGCCGAAAATTTAACTTAC---------TAGTAATT
AGATTCCACTTACTAAGGTGTCTTTTGCTAATTAATGCCAAAAAA-TGTTTTCCTTTCCCTCGCG-AAAATATGTTGCAA
TTAATTAGTTTTCTTCATGCATCATAAATGTTTCCCTAAGTGCATTTCCCCCTTTGTTTCTTGCATATGAAAGGTGGTCC
AAGATAGCTCAACACCTTCCTGGGAGGACCGACAACGAGATCAAAAACTACTGGAGGACAAGGGTGCAAAAGCACGCCAA
GCAGCTCAACTGTGACGCCAATAGCACCAAGTTCAAGGATGCCATGAAGTATCTATGGATGCCTCGCCTCGCTGACCACC
ACCTCCAGCAAGCATCTACAGTTGGTGATCATCTTGTGCCTGGGCTACCAACGGCCTACATGGAGAGCTCCGGCATGGTG
ACATCGTCGTCCGACTCATTCGCATCGGAGTCATATGATGGTGCACGCTGTGCAAATGCGAGCGTGGGAGAGATGATACA
CAGTGGGGATTGGGTTGAAGAGCAGAATCAAGGGTTTTGGCCTGAGTCAAACCAGACTTTCCAGCTTCAAGACTCAGACT
TGTCTGGATGGGTACAAGGGTTCTCCGAGTCCGAGAGCCTCACTGAGAATTTTTGGAGTTTGGAGGACATTTGGAAGATG
CAATGATTTATATTC----TATGTTGGAAAAGGGGTACGTGC-ATATACGATTTATGGTCGGCATGGTGGTGTTGAGTTA
GATGCGTCACTTATATGGAGAAAAAACTAGAGTTAATTAGTTTATTCTAACTCGAAAAGTCACTATTTTATAGAACAGTG
A-------------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G099100
CTAATAAATGCCCATTTCGTATGGATTTAGCTCAAAGAGTGCATCCTAGTGACCTAGTAGCGAATTGCAGAATTCCGCAC
ATAGCGGCCGATTGAAGGCTCGCATCTAATTCTTCCATGTCCTTTTTTTTTGCGGGATTAATTCTTCCATGTCCTTATTC
GTGATTCGTGAGCATTTTAGGATTTATTGAATAGGTGATTCCAGGCAGCTGATCGTTCCAGGGCATTCAGCTCTCCGGAG
GAGTGGTGATGCTTCTCAATTGTCATTGCGTGTGTCGAAAATGTA---AACGACTCTATTTAATGTATGCTTACCAATAT
CCAATGAATAGAA----ATGTCATCTTTTACTCTCTGAAGATGGA-AAGATTCTTCCCGCCTAGCCTCCATCCCGGTGAT
ACTTCTAACGTCATAGGAGGGCGTGTGGAGGTTTGCCCTTCGGCGGATTTTACGGGATTGCGGTCGACATTTGTCTTCAT
TGGATCCACGTGGATCCGGTCTTCGTTCGTCTTTGTTTGTTTGTTTACAGATTGTACCCTTCCGATCTATGCGTCTCTTC
ATCGTCGGCAGTTGTTGTTCAGGTGCGCT-GTCCTATGTGATCTTATCACGACGCTTCCCAACTGTTTACTGTAATAAGA
TTTGCCCGGCTCCAATGAGGGGGTGATCGG--------CGCACCTTCGGCTCGTTCAACTGCTTGTAGTCATCGTTAGAT
GGTCTATAAACCTGGATGTATTTTTTTTTAGTCTGGTG--TTTTTTTAGTGTTCCAAAAAAATACAAATACATGCCATCT
TTTACGTACGCGCGCCGCCTCAATGATGCG----------TCCATCTCCGAGCGCCGACCCATGGCCTCAATTGTACGGT
GCCCT-----TTGTAATTGTGAAAATACGTACGCGCGCACGC-----GCGGAGAGGGATGCCTTGCGCCACCCGTCCTCT
CTCCCTC------------ACATTTCACCACGTGCGCATTCTCTCTCTCCCTCACGCTCACTTTTCTACTTCCTCTTCCC
TCTCGCAAACACTATAAAACGACTTCACTACTTGACATCTCCGTCTCTCATTAATCCAACTCTCCAACTTGTCAAGCTTC
ATAAACTGGCTTAGTCTCCGCCCCTCTCTGTCTCTAGAACTAGAAAAAGGAGAAGAGAACATGGCGTCATGGTCATCGTC
GTCCACGCAGCGGAGCAGCGGCGCGACCATGCCGTGCTCCGTGGTAAAGCTCGACGACGACCTGCTGCGCCACGAGGAGG
AGGCCGCCGAGGAGATCCGGCGCGGCCCGTGGACCGTGGAGGAGGACCTCACACTCGTCAACTACATCGCCGACCACGGC
GACGGCCGCTGGAACTCCCTCGCCCGCGCCGCCGGTACGTCCGCCTGCAGCCGG-----------------CCTCCGGCC
TTGCAGATTGACTTTTCAATTGATTCTTGATTTGAGCCTGCTCTGAAGTATGAACTGACCGTGGATCCATGCATGCTGGT
GCAGGGCTGAAGCGGACGGGGAAGAGCTGCCGGCTGCGGTGGCTGAACTACCTCCGGCCGGACGTGAAGCGCGGCAACTT
CACCGCCGACGAGCAGCTGCTCATCCTCGACCTCCACTCCCGCTGGGGCAACAGGTAATTACCAATAATCAAACGTCGCA
TGTCATGCACACCGTGCATACAGTAGTAACCGGCCAGTACAGCCAGCTAGCTCCAAGTCCAACCTAGC----TAGCTAGC
TAGATGTGGACTAGCTTGCACGTCAAATCAAA-----AGCCTCCAGCTAGCTCCATCGGATGGCACACTTCAGATTGTAC
AAGTCTGGCTACCTAAACGGGAATAGGATGCATATGGGTTGCAGCATGGCCACATGCACCATATGCCTATGCCTTTCTCT
TTCACCTCACATACGGTGCATCAAAGCTGCACGCCTCTTCTATCTTTCTCTTCACCAAAGATTTGGAGAGTACTACCAAT
CTAGCTGTCTCTAATTATTGCTTCGTTAGATTTCATGTTTTTTTTTCAAACAAATTATTCCCTCCGTAAAGAAATATAAG
CTAAAGCTCTTATATTTCTTTATGGAGTGAGTATTTATTACTAATTCATTATAGAGTTGATTACTTAATTATAGTTCATT
TTCTCCACATGGACGTAGTGTATATCACACACTCCTACTAGAGTTGCCGAAAATTTAACTTAC---------TAGTAATT
AGATTCCACTTACTAAGGTGTCTTTTGCTAATTAATGCCAAAAAA-TGTTTTCCTTTCCCTCGCG-AAAATATGTTGCAA
TTAATTAGTTTTCTTCATGCATCATAAATGTTTCCCTAAGTGCATTTCCCCCTTTGTTTCTTGCATATGAAAGGTGGTCC
AAGATAGCTCAACACCTTCCTGGGAGGACCGACAACGAGATCAAAAACTACTGGAGGACAAGGGTGCAAAAGCACGCCAA
GCAGCTCAACTGTGACGCCAATAGCACCAAGTTCAAGGATGCCATGAAGTATCTATGGATGCCTCGCCTCGCTGACCACC
ACCTCCAGCAAGCATCTACAGTTGGTGATCATCTTGTGCCTGGGCTACCAACGGCCTACATGGAGAGCTCCGGCATGGTG
ACATCGTCGTCCGACTCATTCGCATCGGAGTCATATGATGGTGCACGCTGTGCAAATGCGAGCGTGGGAGAGATGATACA
CAGTGGGGATTGGGTTGAAGAGCAGAATCAAGGGTTTTGGCCTGAGTCAAACCAGACTTTCCAGCTTCAAGACTCAGACT
TGTCTGGATGGGTACAAGGGTTCTCCGAGTCCGAGAGCCTCACTGAGAATTTTTGGAGTTTGGAGGACATTTGGAAGATG
CAATGATTTATATTC----TATGTTGGAAAAGGGGTACGTGC-ATATACGATTTATGGTCGGCATGGTGGTGTTGAGTTA
GATGCGTCACTTATATGGAGAAAAAACTAGAGTTAATTAGTTTATTCTAACTCGAAAAGTCACTATTTTATAGAACAGTG
ATTAAAGTTCTTTTCGTTTCTT----TTTCTTCTTTTCTACTTTTTGGGTCAGGTGTTCA-TTTTTTCCTCATACGGAC-
TTGTTCTCCGAGAGGTTAAAGGGATGGAGTATTCCGCGCATGATGTGTAATGTTACTTATAAGGATGCAAATGTACAAGC
GCACAAATGATTGGTATTGAAACCTTTGTGCACTCATATTTATGTGCTACAATTATCCTCCAAAGTCCCAACGTCTTGAT
TTCAAGTCTCTGGCCTTTTCACGTGATTGCTTACGTACTTTCTCTGAAGCGATAAATATGCATCTAGTTCGAGCTATTCG
AATTGGTCACCGTTGCGCAAGGGAGGAGGTCCAACATGAACATGCTAATGTCCCGTGTGGAGCACCGAATTTCACAGAGA
ACAACTAGCTGATTCGCTCAAGGATCTGCAAAAAAGAT-----------GACCCTAAGTCTCTAAACTAGAAGTTGATTT
AGACGAACTAGTAGCTATACAACAACATGTTGGTATTATATATA---------GTATGAGGAATTGTATAAAACTACATG
TATTCGAACACTACTCCATTTATATATGCTAGGGTCTTTCCCCTTTTCGAAAAAAAGAAAAAAATTATATATGCTACAGG
TCTTCTCAAAAAGCAAAAGAAGAAAGAAATATAGTAGCAGTACAAATTATGAAATATATGTAAAAAAACACATTTCAAAA
TGTAAAACAATTCGAGAAAAAATCCCGCGTGTGCATCCGGACATTATATGTGTGTGCACAAAGTTTCGCTGAAAAAAGAC
ATTTTTTGTGGCATGTACAAAAAAGACG-AAAAAATGCCTCGTCAATAGCTGTAATCAAGCATCGAAAATTGTCTTTTTT
ACACAAGCCACAAAAAATGTCCTTTTTTCACCGGAACTTTGGGTACGCACATATAAAGTCCGGATTTACACGCGGGATTT
TTCCTCGTAATTTTTTAACATTTCAAAATGTGTATTTGGACAATGGGTACATATACACCTATGAGCCA
>chr5A_1
CTAATAAATGCCCATTTTGTATGGGTTTAGCTCAAAGAGTGCATCCTGGTGACCTAGTAGCGAATTGCAGAATTCCGCAC
ATAGCGGCCGATTGAAGGCTCGCATCAAATTCTTCCATGTCCTT------------------------------------
---ATTCGTGAGCATTTTAGGATTTATTGGATGGATGATTCCAGGCAGCTGGTCGTTCCACGGCATTCAACCCTC-CGAG
GAGTGGTGATGCTTCTCAATTGTCACTGCGTCT------------ACGAACGACTCTATTTAATGTATGCTTACCAATAT
CTAACGAATAGAAATGTAAATCATCTTTTACTTTCTGAAGATGAA-AAGATTCTCCCTGCCTAGCTTTCATCCTGGTGAT
GCTTCTATCATTATAGGAGGATGTGTGGAGGTTTGTCCTTCGGCGAATTTTACGGAATTACGAGCGAAATTTGTCTTTGA
TGGATCTATGTGGATCCAGTTTTCGTTCGTCTTTATTTGTCTGTTTACATATTGCACCCTTTCGATCTATGCGTCTCCTT
ATCGTCG-CAGTTGCTGTTCAGGTGCGTTGGTCGCATGTGATTTTAGCGCGACGCTTCCCAAATGTTTACTGTAATAAAA
TTTGCACGGCTTCGATGAGGAGATGATGATGACGGTGCCGCGCCTTCGTCTTGCTCAAGTGCTTGCAGTCATCGTTAGAT
GGTATGCAAATCTGGATGTGTTTTTTACCTT--TGATG--TTTTTTTAGTGTTCTAAAAAAATACAAATACATGCCATCT
TTTACGTACGCGCGCCGCCTCAATAATGCGGTCCATATCATCCATCTCCGAGCGCCGACCCATGGCCTCAATTGTACGGT
GCTC------TTGTAGTTGTGAAAATACGTACACGCGCACGC-----GCGGAGAGGGATGCCTTGCGCCACCCGTCCTCT
CTCCCTCG------------CATTTCACCACGTGCGCATTCTTTCTCTCCCTCGCGCTCACTTTTCTACTTCCTCTTCCC
--TCGCAAACACTATAAAACGACTTCACTACTTGACATCTCCCTCTCTCATTAATCCAACTCTCCAATTTTTCAAGCTTC
ATAAACTGGCTTAGTCTCCGCCCCTCTCTTTCTCTAGAACTAGAAAAAGGAAGAGAGAACATGGCGTCATGGTCATCGTC
GTCCACGCAGCGGAGCAGCGGCGCGACCATGCCGTGCTCCGTGGTAAAGCTCGACGACGACCTGCTGCACCACGAGGAGG
AGACCGCCGAGGAGATCCGGCGCGGCCCGTGGACCGTGGAGGAGGACCTCACACTCGTCAACTACATCGCCGACCACGGC
GATGACCGCTGGAACTCCCTCGCCCGCGCCGCCGGTATGTCCGCCTGCAGCCGG-----------------CCTCCGGCC
ATGCAGATTGTCTTTTCAATTGATTCTTGATTTGAGCCTACTCTGAAGTAGGAACTGACCGTGGATCCATGCGTGCTGGT
GCAGGGCTTAAGCGGACGGGGAAGAGCTGCCGGCTGCGGTGGCTGAACTACCTCCGGCCGGACGTGAAGCGCGGCAACTT
CACCGCCGACGAGCAGCTTCTCATCCTCGACCTCCACTCCCGCTGGGGTAACAGGTAATTACCAATAATCAAACGTCGCA
TGTCATGCACACCGTGCATACAGTAGTTACCGGCCAGTACAGCCAGCTAGCTCCAAGTCCAACCTAGCTAGCTAGCTAGC
TAGATGTGGACTAGCTTGCACGTCAAATCAAATTGAAAGCCTCCAGCTAGCTCCATCGGATGGCACACTTCAGATTGTAC
AAGTCTGGCTACCTAAACGGGAATAGGATGCATATGGGTTGCAGCATGGCCACATGCACCATATGCCTATGCCTTTCTCT
TTCACCTCACATACGGTGCATCAAAGCTGCACGCCTCTTCTATCGTTCTCTTCTCCAAAGATTTGGAGAGTACTACCAAT
CTAGCTGTCTCTAATTATTGCTTCGTTAGATTTCATGTTTTTA-TTCAAACTAGTTATTTCT------------------
---------TTATATTTCTTTA-GGAGGGAGTATTTATTTCTAATTCATTATAGAGTGGATAAATTAATTATAGTTCATT
TTCTCCACACCCA------------CACACACTCCAACGAGAGTTGCCGAAAATTTAACTTAC---------TA---ATT
AGGTTCCACTTACAAAGGTGTCTTTTGCTAATTAATGTCGAAAATTTGTTTTCCTTTTCCTCACG-AAAAGATGTTGCAA
TTAATTAGTTTTCTTCATGCACCATAAATATTTCCCTAATTGCATTTGTTCCTTTGATTCTTGCACATGAAAGGTGGTCC
AAGATAGCTCAACACCTTCCTGGGAGGACCGACAATGAGATCAAAAACTACTGGAGGACAAGGGTGCAAAAGCACGCCAA
GCAGCTCAACTGTGATGCTAACAGCACCAAGTTCAAGGATGCCATGAAGTATCTATGGATGCCTCGCCTTGCTGACCACC
ACCTTCAGCAAGCATCTACAGTAGGTGATCATCTTGTGCCTGGGCCACCAACGGCCTACATGGAGAGCTCCGGCATGGTG
ACATCGTCGTCCGACTCGTTTGCATCGGAGTCATATGATGGTGCACGCTGTGCAAATGCGAGCGTGGGAGAGATGATACA
TAGTGGGGATTGGGTTCAAGAGCAGAATCAAGGGTTTTGGCCTGAGACAAACCAGAATTTCCAGCTTCAAGACTCGGAGT
TGTCTGGATGGGTACAAGGGTTCTCCGAGTCCGACAGCCTCGCTGAGAATTTTTGGAGTTTGGAGGACATTTGGAAGATG
CAATGATTTATATTC----TATGTTGGAAAAGGGTCACGTGC-ATATACGATTTATGGTCGGCATGGTGGTGTTGAGTTA
GATGCGTCACTTATATGGAGAAAAAACTAGAGTTAATTAGTTTATTCTAACTCGAAAAGTCACTATTTTATAGAACAGTG
ATTAAAGTTCTTTTCGTTTCTTTTTCTTTCTTTTTTTTTACTTTTTGGGTCAGGTGTTCATTTTTTTCCTCATACGGAC-
TTGTTCTCCGAGAGGTTAAAGGGATGGAGTATTCCGCGCCTGATGTGTAATGTTACTTATCAGGATGCAAATGTACAAGC
GCACAAATGATTGGTATTGAAACCTTTGTGCACTCATATTTATGTGCTACAATTATCCTCCAAAGTCCCAACGTCTTAAT
TTCAAGTCTCTGGCCTTTTCACGTGATTGCTTACGTACTTTCTCTGAAGCGATAAATATGCATCTAGTTCGAGCTATTCG
AATTGGTCACCGTTGCGCAAGGGAGGAGGTCCAACATGAACATGCTAATGTCCCGTGTGGAGAACCGAATTTCACAGAGA
ATAACTAGCTGATTCGCTCAAGGATCTGCAAAAAAGAT-----------GACCCTAAGTCTCTAAACTAGAAGTTGGTTT
AGACGAACTGGTAGCAATACAACAACATGTTGGTATTATATATA---------GTATGAGGAATTGTATATAACT-----
-------------------------------------------------------------------TATATGCTGCAGG
TCTTCTCAAAAAGCAAAAGAAGAAAGAAATATAGTACCAGTACAAATTATGAAATATATGTAAAAAA-CACATTTCAAAA
TATAAAAATCAAGACAAAATT---CCGCGAGTGCATCGGGACATTATATGTGCGTGCACAAATTTTCATTG-AAAAAGAC
ATTTTTTGTGGCATGTACAAAAAAGACAAAAAAAATGCCCCGTGAATAGTTGTAACCAGGCATAAAAAATTATCGTTTTT
ACACAAGCCGCAAAAAATGTCCTTT-TTCACCGGAACTTTGTGTACGCACATATAAAGTCCGGATTCACACACGGAATTT
TTTCTCATAATTTTTTAACATTTCAAAATGTGTATTTGGACAATGGGCACATATACACCTATGAGCCA
>chr5B_1
CTAATAAATGCCCATTTCGTATGGATTTAGCTCAAACAGTGCATCCCAGTGACCTAGTAGTGAATTGCAGAATTCCGCAC
ATAGCGGCCGATTGAAGGCTCACATCTAATTTTTCCATGTCCTT------------------------------------
---ATTCGTGAGCATTTTAGGATGTATTGGATAGGTGATTCCAGGCAGCCGATCGTTCCATGGCATTCAGCTCTC-GGAG
GAGTGGCTATGCTTCTCAATTATCACTG-GTTTGTTGAAAATGTAACGAACGACTCTGTTTAATGTATGCTTACGAATAT
TTAACGAGTATAAATGCATATCATCTTTTACTCTCTGATATGGAATAAGAATCTTTCCGGCTAGCCTCCATCCCGGTGAT
GCTTCTAGCGTCACTGAAGGGCGTGTGGAGGTTTGCCTTCCGTA-GATTTTACGGGATTGCAGTCGACATTTGTCTTAAA
TGGATCCACGTGGATTTGGTCTTCGTTCGTCTTTGTTTGTCTATTTACATATTTTACCCTTTCGATCTATGCGTCTCTTC
ATCGTCGACAGTTGTTGTTCAGGTACGCTTGTCCCGTGCGGTCTTAACACGATGCTTCCCGGCTGTTTACTATAATAAAA
TTTGCCCGGCTTCGATGAGGGG-TGATGATGACGGCAATACGCTTTCGGCTCGCTCAAGTGTTTGTAGTCATGGTTAGAT
GGTCTACAAACCTAGATGTATTTTTTTTAAGTCTGGTTTTTTTTTGTTGTGTTAAAAAAAAATACATATACATGCCATCT
TTTACGTACGCACGCCGCCTCAATGATGCGGTCCATATCATCCATCTCCGAGCGCCGACCCATGGCCTCAATTGTACGGT
GCCCTTGTAGTTGTAGTTGTGAAAATACGTACGCGCGCACGCGCGGAGCGGAGAGGGATGCCTTGCGCCACCCGTCCTCT
CTCCCTCCCTGCCTCACACACATTTCACCACGTGCGTATTCTCTCTCTCCCTCGCGCTCACTTTTCTACTTTCTCTTCCC
TCTCGCAAACACTATAAAACGACTTCACTACTTGACATCTCCGTCTCTCATTAATCCAACTCTCCAACTTGTCAAGC---
ATAAACTGGCTTAGTCTCCGCCCCTCTCTGTCTCTAGAACTAGAAAAAGG----GAGAACATGGCGTCATGGTCATCGTC
GTCCACGCAGCGGAGCAGCGGCACGACCATGCCGTGCTCCGTGGTAAAGCTCGACGACGACCTGCTGCGCCATGAGGAGG
AGGCCGTCGAGGAGATCCGCCGCGGCCCGTGGACCGTGGAGGAGGACCTCACACTCGTCAACTACATCGCCGACCACGGC
GACGGCCGCTGGAACTCCCTCGCCCGCGCCGCTGGTACGTCCTCGTGCAGCCGCCGCCGACGATGCACCGTCCTCCGGCC
ATGCAGATTGACTTTTCAACTGATTCTTGATTTGAGCCTGCTCTGAAGTATGAACTGACCGTGGATCCATGCATGCTGGT
GCAGGGCTGAAGCGGACGGGGAAGAGCTGCCGGCTGCGGTGGCTGAACTACCTCCGGCCGGACGTGAAGCGCGGCAACTT
CACCGCCGACGAGCAGCTGCTCATCCTCGACCTCCACTCCCGCTGGGGCAACAGGTAATTACCAATAATCAAACGTCGCA
TGTCATGCACACCGTGCATACAGTAGTAACCGGCCAGTACAGCCAGCTAGCTCCAAGTCCAACCTAGCTAGCTAGCTT--
--GATGTGGACTAGCTTGCACGTCAAATCAAATTGAAAGCCTCCAGCTAGCTCCATCGGATGGCACACTTCAGATTGTAC
AAGTCTTGCTACCTAAACGGGAATAGGATGCATATGGGTTGCAGCATGGCCACATGCACCATATGCCTATGCCTTTCTCT
TTCACCTCACATACGGTACATCAAAGCTGCACGCCTCTTCTATCTTCCTCTTCTCCAAAGATTTGGAGAGTACTACCAAT
CTAGCTGTCTCTAATTATTGCTTCCTGAGATTTCATGTTTTTTTTTCAAACTAGTTATTCAT------------------
---------TTCTAATTCTTAGCTAGCTAGATAT---------------------GTTGATAAATTGATTATAGTTCATT
CTCTCCACACGTATGTAGTGTATATCACACACTCTTGCTAGAGTTAGCGAAAAATAACTTACTAAATAGAAGTATTAATT
AGACTCCACGTACTAAATTATCCTTTGCTAATTAATGTAAAAAAA-TATTGCCCATTCCCTCCCAAAAAAGATGCCGCAA
TTAATTAATTTTCTTCATGCACCATGGATGTTTCCCTAATTGCATTTGCCCCTTTTATTCTTGTACATGAAAGGTGGTCC
AAGATAGCTCAACACCTTCCTGGGAGGACCGACAACGAGATCAAAAACTACTGGAGGACAAGGGTGCAAAAGCACGCCAA
GCAGCTCAACTGTGATGCCAACAGCAGCAAGTTCAAGGATGCCATGAAGTATCTATGGATGCCTCGCCTTGCTGACCACC
ACCTCCAGCAAGCATCTACAGTTGGTGATCATCTTGTGCCTGGGCTACCGACGAGCTACATGGAGAGCTCCGGCATGGTG
ACATCATCGTCCGACTCTTTCGCATCGGAGTCATACGATGGAGCACGCTGCACGAATGCGAGCGTAGGAGAGATGATACA
GGGTGGGGATTGGGTGCAAGAGCAGAATCAAGGGTTTTGGCCTGAGTCAAACCAGACTTTCCAGCCTCAGGACTCGGAGT
TGTCTGGATGGGTTCAAGGGTTCTCCGAGTCTGAGAGCCTCGCTGAGAATTTTTGGAGTTTGGAGGACATTTGGAAGATG
CAATGATTTATGTTCTATATATGTTGGAAAAGGGTACGTGCATATATACGATTTATGGTCGGCATGGTGGTGTTGAATTA
GATGCGTCACTTCTATGGAGAAAAAACTAGAGTTAATTAGTTTATTCTAACTTGAAAAGTCACTATTTTATATAAAAGTG
ATTAAAGTTCTTTTGGTTTCTTTTTTC-------------CTTTTTTGGTCACTTGTTCA-TCTTTTCCTCATACCGACT
TTGTTGTCCGAGAGGTTAAAGGGATGGAGTATTCCGC--ATGATTTGTAATGTTACTTACAAGTATGCAAATGTACAAGT
GCACAAATGATTGGTATTGAAACTTCTGTGCACTCATACTTATGTGCTAAAATTATCCTCCAAAGTCCCAACGACTTAAT
TTCAAGTGTCAGGCCTTTTCACGTGATTGCTTAGGTACTTTCTCTGAAGCGATAAATATGCATGTGGTTCGAGCTATTCG
AATTGGTCACCGTTCCGCAAAGGAGGAGGTCCAACATGAACTTGCTAATGTCCCGTGTAAAGTGCCGAATTCCACAGAAA
ACAACTAGCTGATTCGCGCAAGAATCTGCAGAAAGACCGTGTATTTCAGGACCCTAATTCTCTAAATTAAAAGTTGGTTT
AGACGAACTAGTAGCAATACAACAACATGCTAGTATTATATATGAGCATAATTGTATGGGGAATTGTATATAACTATATC
TACTGAAACACTACTCCAATAATATATGCTA-------------------------------------------------
--------------------------------------------------------------------------------
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>SNPs
--------------------------------------------------------------------------------
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------------------------S------------------------------S--------------S----
-------------------------S-----S---S--------------------------------------------
-S--S--------------S-----------------------S------------------------------------
S------S---------------------------------------------------------------------S-S
----------------------------------------S--------S-----------S------------------
-------S--------------------------S-----------S-------------------------------S-
-----------S-S--------S----SSS-----------S-----------S----S---------------------
------S---------------------S-------------------------S-------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
---------------------------------------------------SS---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---------------------------------------------------S-S-------SSSSSSSSSSSSSSSSSSS
SSSSSSSSS-------------S----------------S---------------------S-S----------------
---------S-S-S------------------------------------------------------------S-----
-------------------------------------S------------------------S-------S---------
---------------------S-----------------S-------S--------S--------S--------------
--------------------------------------------------------------------------------
---------------S-----S-----------------------------------------------S----------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
S---------------S----------------------------------------------------------S--S-
-----------------------------------------S--------------------------------------
----------------------------------SS--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S----S------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
----------------------------------------------------------------------------S---
---------------S------------------------------------------------------S-----S--S
--S-SS------------S-S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S----
------------------------------------S------------------------------S------------
-S-----SSSSSSSSS---SSSSS-----S-------S--------------S---------S----SS--S--------
---------------------------S-----------S---S-----S-----S--S----SS------S--S-----
---------S---------------S---------------S------------------------S----S---S----
--S---S----------------------------------------S--------------------
>forward_669
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---------CTCCAATGAGGGGGTGATCG---------------------------------------------------
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>reverse_2721
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CAGTGGGGATTGGGTTGAAGA-----------------------------------------------------------
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>forward_2502
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--AGCTCAACTGTGACGCCAAT----------------------------------------------------------
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>reverse_3813
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----------------------------------------------------TGTGCACAAAGTTTCGCTGA--------
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