>input_sequence_40257
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATGGACAACACCCAATTCGCCATGGTATCCT--ATTTACACAAGTTGCGCAGAGAAATCTAATTATGT
TTCT-ACCTGCTGTGTGTGATAGAGTATCCTTACCTACCTGCTTTTTTTTCTTTGCTTCTGGTGGAGCAGATTGAGGAGC
TGGCCTCGCTCATCAAGGACAACCTCTACAGCAAGCACCTCGTCCTCTCCATCGAGGAGGCTCTTGTCACTCTCCTGCAG
CAACGGTACCACGATGACGACGACGAGGAGGAACATGACCGCGCCGCGACCGGAGCGCGTCACGGGCCAGCTGGGAATAC
CATAGAGCTCCAGCCCACCAGCTCATACAACCGCCTCCTTTTGCATCGTCTCGCCGACATTTATGGGTATAAAAAATCTC
CCTATTGCATTCATCCCAT---------CTGTGCTGACATGCTAAAGTCACTGCAGCAAGCGCTCCC-TTGCTAA-TTTT
ATCTGCTTTTGTGTCGCTGCTAGGTTTGCTCATGAATCTGTTGGCGAGGGCGAGGATCGGCATTTGGTTCTCCAGCGCTG
CCCTGAAACAGCCATGTATGTCGCCGAATGTGCTCACGAGCTCCCTTCTTGAAACCATTCTTGTTTGGCTCGATTCAGTA
ACGTCGTACATGTCTACACCATACCAAAA---TACTAGTGTGTTCCAAGCAGGGTGTCTCACTACCAGTGCCAATGTTCT
CTTTTTCACTGCTACACATTTAACTCGCCACACA----TCGGTGGTTGGCTAAATTTCAGAGCTGTTATTATGTTTGCCC
TGTTTTGAATTTAGTTATGTTATTTGTTTGCAGCCCTCCTGTCCTTGTCAGCGATGTGTTATGGAATTATGACGACAGTG
ATGGCCCTTCAGCCTCTCTTATGCTAGCGAGAAATGAGACAGGTGAG----TCATTCTTCATGTGTTTATTGTTC-TATC
ATGTAATGACCAGGCAGAAGCTTGTTTGAAACAAATAGTTTGAGGCTACTTCCTGAGAAGAAAAGCGGGCTTTACTTAGG
AAGTAAAGAGTGGCCAGTCCTTTGCTATGGTCAAATAGTCAAATCTATTCGTAGTGTTACCTTCAGAAACTCTAAACGCA
TCATTAGCAAAAAGAATTTTCCTACATGTATGAATATGATCTC--ATCTCATGCAATCCTCTGTTTTATAAGTTTATGCT
TACTGCGTCTGAAATTTGTGAAGATATTCGAGGGTAGGACTGAGCAATGCAAAGCTTCTAGCAGTTCCAGTTTATTTTTC
AGCTCTTGCACAGTGTAGCTTGTAACCTGCATTTAGCTATTTTT-GGGTCAGCCCTTCTGCTGGCCACTAGCTGTACATA
ACTTGTTTTCCTTCATTAAGTAATTAGGCAGACCTCATGCATGCCTGTTTAAAACACTAGCTTGCAGTAATTGCTAATTG
ATACTATCTTCTAACAGATCTTCAGAAAACTCATGAGCCAGAAGATGTCCAAAACGCTATTTCTCTTGAAAGCTTGCATC
TGAAAACTGATACACCAGTTTCGAAGCCTTTGCAGCAGTCGGTGCCACCTTCAGCAGCATCACTCAAAGAGAGGGAAGCT
GCTTATCGGGCTGCACGTGAGCGAATCTTCTCTTCGCATGAAGCCAAGGGAAACGACACATCAGCAGCAAAATCTAGGCA
TGTTCCTGCTGTTGCTCAACGGATGATCGCACATGCACTTGGTAAGAGAGTTGAAGATCCAACAGAGAGAGCTGCCTTGG
------TCAAAGGGAAGGAA---CTGGTAAATGGACGAACTAGTCCGACGAGTAAAGAAGCAGTTAAACACAACTCAAGC
TCACCTGATGGTGGTCCGTATCGGAACCCATCTACTCGAAGCCGTCCTACACCTACTGTTAGCGCCGAGACGCTGAAGAA
AGAACAGACTGGAGCGGCTAAAAGGATGTTTGCACATGCATTGCGGCTCCCTGGCGTTGAAATACCCAATGGCGCAGCAC
GAAAACCCAAGTAA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3D_1_TraesCS3D01G086700
AACACTAAACATGCTCTTGTAGGGAAATCATACTCAGAACATGGATACATATGAACTCATACTTTTGGAACTTGGTAAGA
AAATGTAGTTAGGTTTAAATTAAACAAATGTTTTAGATAATTTAGAATAGTTGACGCACACCGCACATGAAGGATTGGTG
GAAACCTATCCTAAAAACTTTTGGTAAAGCAGTGTGATCATTTATGAGCGAGGGGAAATACTCTAGAGGGACAAACTTTT
TCGGCCGGAGGAAGTACGAAACAAACTCATATAGAGCAATATAAACAGTGTGGAGATCCACTTTTGCGGGTTTTCCACAT
ATAACGGATCATTTATTTTTTCACAACAGTTTACAATGTTTTTTTTTCTTGAGGAACAGTTTACATTGTTAATGTAGTAG
GAGTACTATCTAGTCTGTATCCCTTACTTCTATTTTTGCTGATTCTTTTCATGAAAACTCGCAATTTTGGCCA-----GG
TTTCAAAAGTTGAGTTCATGTAACATACGGGGTACAAACTAAATAAATCCGGTGCACATCGTGCCCGTACATTGTTCATC
TGACGGTCGGGTAGGAAGATAGGTATCCTCTGCGGCTCTGCCTGGCTCTCCCCTCCT----CCCGGTTTCAATCCTGTCT
CT--GAAGACTCCTCCCAAATTCTCAACTGCTGCTGCTGC---------CGCCGCTGCTTCTTCCTCCTCCTCCCC----
GCGATTCCTCCCCGCAATTCCTCCCCCCTCTTCTTCGGCGC---CGGCGGGGACGACGGGACACAGCCGAGAACCCAGGC
TGCCAGGACCAGCGGCCACTTCAAGCTTGCTTCTTGGTAAGGATAGAGGAACCCTAGCTTGCTCCACCGATTGATTGATT
CGATTCGATTCGCCAGGCGGTTCCTTTGTTGGTCTCATCCTCCGCTCAGTTCATAATTCGATTCGATTCGAGTAGGTGCT
TC---------TTCTGCCTCAGCGCAGCGCGAGATCCATCTGAGCGGAGCCAAGCTGAGCTGATCCCATTGGC-------
---------GAGATGGACAACACCCAATTCGCCATGGTATCCT--ATTTACACAAGTTGCGCAGAGAAATCTAATTATGT
TTCT-ACCTGCTGTGTGTGATAGAGTATCCTTACCTACCTGCTTTTTTTTCTTTGCTTCTGGTGGAGCAGATTGAGGAGC
TGGCCTCGCTCATCAAGGACAACCTCTACAGCAAGCACCTCGTCCTCTCCATCGAGGAGGCTCTTGTCACTCTCCTGCAG
CAACGGTACCACGATGACGACGACGAGGAGGAACATGACCGCGCCGCGACCGGAGCGCGTCACGGGCCAGCTGGGAATAC
CATAGAGCTCCAGCCCACCAGCTCATACAACCGCCTCCTTTTGCATCGTCTCGCCGACATTTATGGGTATAAAAAATCTC
CCTATTGCATTCATCCCAT---------CTGTGCTGACATGCTAAAGTCACTGCAGCAAGCGCTCCC-TTGCTAA-TTTT
ATCTGCTTTTGTGTCGCTGCTAGGTTTGCTCATGAATCTGTTGGCGAGGGCGAGGATCGGCATTTGGTTCTCCAGCGCTG
CCCTGAAACAGCCATGTATGTCGCCGAATGTGCTCACGAGCTCCCTTCTTGAAACCATTCTTGTTTGGCTCGATTCAGTA
ACGTCGTACATGTCTACACCATACCAAAA---TACTAGTGTGTTCCAAGCAGGGTGTCTCACTACCAGTGCCAATGTTCT
CTTTTTCACTGCTACACATTTAACTCGCCACACA----TCGGTGGTTGGCTAAATTTCAGAGCTGTTATTATGTTTGCCC
TGTTTTGAATTTAGTTATGTTATTTGTTTGCAGCCCTCCTGTCCTTGTCAGCGATGTGTTATGGAATTATGACGACAGTG
ATGGCCCTTCAGCCTCTCTTATGCTAGCGAGAAATGAGACAGGTGAG----TCATTCTTCATGTGTTTATTGTTC-TATC
ATGTAATGACCAGGCAGAAGCTTGTTTGAAACAAATAGTTTGAGGCTACTTCCTGAGAAGAAAAGCGGGCTTTACTTAGG
AAGTAAAGAGTGGCCAGTCCTTTGCTATGGTCAAATAGTCAAATCTATTCGTAGTGTTACCTTCAGAAACTCTAAACGCA
TCATTAGCAAAAAGAATTTTCCTACATGTATGAATATGATCTC--ATCTCATGCAATCCTCTGTTTTATAAGTTTATGCT
TACTGCGTCTGAAATTTGTGAAGATATTCGAGGGTAGGACTGAGCAATGCAAAGCTTCTAGCAGTTCCAGTTTATTTTTC
AGCTCTTGCACAGTGTAGCTTGTAACCTGCATTTAGCTATTTTT-GGGTCAGCCCTTCTGCTGGCCACTAGCTGTACATA
ACTTGTTTTCCTTCATTAAGTAATTAGGCAGACCTCATGCATGCCTGTTTAAAACACTAGCTTGCAGTAATTGCTAATTG
ATACTATCTTCTAACAGATCTTCAGAAAACTCATGAGCCAGAAGATGTCCAAAACGCTATTTCTCTTGAAAGCTTGCATC
TGAAAACTGATACACCAGTTTCGAAGCCTTTGCAGCAGTCGGTGCCACCTTCAGCAGCATCACTCAAAGAGAGGGAAGCT
GCTTATCGGGCTGCACGTGAGCGAATCTTCTCTTCGCATGAAGCCAAGGGAAACGACACATCAGCAGCAAAATCTAGGCA
TGTTCCTGCTGTTGCTCAACGGATGATCGCACATGCACTTGGTAAGAGAGTTGAAGATCCAACAGAGAGAGCTGCCTTGG
------TCAAAGGGAAGGAA---CTGGTAAATGGACGAACTAGTCCGACGAGTAAAGAAGCAGTTAAACACAACTCAAGC
TCACCTGATGGTGGTCCGTATCGGAACCCATCTACTCGAAGCCGTCCTACACCTACTGTTAGCGCCGAGACGCTGAAGAA
AGAACAGACTGGAGCGGCTAAAAGGATGTTTGCACATGCATTGCGGCTCCCTGGCGTTGAAATACCCAATGGCGCAGCAC
GAAAACCCAAGTAAGAAG----AGCTGGAGATGAATGAAATTCCGAGAATGCATGGGC--TGGGGCTGCCTTGACTGCCG
TGCCCCGTGCGATGGAGCTGGAAGCCCTCGCTGTGCCAGCCTGCTCTTAT-----GGAGTGCCACTTGTGATGCATGTTA
GAAGCAGATGAAAGGATTGGCTGTTGAACTCAGCCGGTGTGAGACAACAGACAATGCACCGTAACCTTT----TGCCTCC
CTTGACTGGAGTTGAGTCGAAGAAAAACCTGAGGGCACGCGGCGAGAAGGCTGAATCCAAAGTGGCTGTTCCCTGTTAGA
ATTGTGCTAGTA--AGTACGTA--------GTAGTGTTGGTTGCTAGCCAACAGAAA-AAATGTTGTTGTTAGCGCCTAC
CCCAGTCTAGTGAGTGTTTTTGGCTCTCCAACCTGCTGTATCGTGCTTAGGCCTTGTATAATGAAAGATGCTTAGGGGAG
GTGCTTAGAGAAATAAACCAGGCTTTTCTTAAGCACCGGTGCTTATTTGTATAAGATAGACGCTTAACTATGCGTCTCTC
CTGTAGAAATAAGCATCGGTGCTTCAGAAAATCCCGGTTTATTTTTCTAAGCACCACCCTAAGCATCTAGCATTCGACAG
GGCCTTAGCTTATATACTACACTTTC-----------------------GTGTATCTTACTATCTTGGTTTGGTTTTGAA
AGGCTTGGTTCCC--ACAAAGTTTTATAGGTGGTGCATGAAATTCGTTCTTTTTCC-AGAAAAAACACATTGAAAATAGA
GTTTAGGTTATATATTCCTCCTAAGATGTACTCCCTCCGTTCCCATAGTATAAGTTCTAATTACA--------TAAGTTA
CAAGCAGGGAACACAGACTAATGCAAATCCCAGGTCGTCAGTAGAACAGCTCTACGCCCGGTGGCCCCAGCCCTAGCCCA
TAGCCTGGCCTCATTTTTGATTCTACAGTTGCACATGCAGTCATTTCGGTGCTTCCAAGCGTCGCGGAGGCAAGCCCTTT
GCGCATCAACTTGGTTGTCTTTTTTCATTCATTC
>chr3B_411
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TACTCTGTATCCCCTACTTCTATGTTCTCTGATTCTTTTAATCAAAAGTTCTCTTTTTTTGAAACAAGGG
TTTCAATAGTTGAGTCCACGTAATATACGGGGTACAAACTATATAAATCTGGTGTACATCGTGCCCGTAAATTGTTCATC
TGACGGTCGGGTAGGAAGATAGGTATCCTCTGCCCGGCTCTCC-----------CCT----CCCGGTTTCAATCCTGTCT
CTCTGAAGACTACTCCCAAATTCTCAACTGCTGCTGCTGCTGCTGCTGCCGCCGCTCCTTCCTCCTCCTCCTCCTTCTCG
GCGATTCCTCTCCGCAATTCCTCCCCCCTCTTCGTCGGCGC---CGGCGCGGACGACGGGGCACAGCCGAGAACCCAGGC
TGCCAGGACCAGCGGCCACTCCAAGCTTGCTTCTTGGTAAGGGA--AGGAACCCTAGCTTGCTTCGCCGATTGATTGATT
CGGTTCGATTCGCCAGGAAGTTCCTTGC-TCGTCTCATCCTCCGCTCAGTTCATAATTCGATTCGATTTGAGTAGGTGCT
TC---------TTCTACTTCAGCGCAGCGCGAGATCCATCTGAGCCGAGGTGAGCTTAGCTGCCCCCATTGGACTGAACT
TCAGGGGGAGATATGGACAATACTCAATTCGCCATGGTAATTCCCATTTACACAAGTTGCGCAGAGAAATCTAATTATGT
TTCT-ACCTGCTGTGTGTGATAGAGTATCCTTACCTACATGCTTTTTTTTCTTTGCTTCCGGTGGAGCAGATTGAGGAGC
TGGCCTCGCTCATCAAGGACAACCTCTACAGCAAGCACCTCGTCCTCTCCACCGAGGAGACACTCGTCACTCTGCTGCAG
CAACAGTACCACGATGGCGACGATGACGAGGAACATGACCGCGCCGTGACCGAAACGCGTCACAGGGCAGCTATGAATAC
CATAGAGCTCCAGCCCACCAGCTCCTACAACCGCCTCCTTTTGCATCGTCTCGCCGACATATATGGGTATAAAAAACCTC
CC--------------------------------TGACATGCTAGAGTCACTGCAGCGACCGCTCCG-TTGCTAACTTCT
ATCTGCTTTTGTGTCGCTGCTAGGTTCGCTCACGAATCTGTTGGCGAGGGCGAGGATCGACATTTGGTTCTCCAGCGCTG
CCCTGAGACAGCAATGTATGTCGCCGG------------GCTCCCTTCTTGAAACCTTTCTTGTCTGGCTCGATTCAGCA
ACGTTGTACATGTCTACACCATGCCAAAATAGTACTAGTGTGTTTCAAGCAGGGTGTCTCACTACCAGTACCAATGTTAT
CCTTTTCCCTCCTATATATTTAACTCGCTGCACA----TTGGTGGTTGGCTAAA-TTCAGAGCTGTTATTATGTTTGCCC
TGTTTTGAATCTAGTTATGTTATATG-TTTCAGCCCTCCCGTCCTTGTCAGCGATGTGTTGTGGAATTATGACGACAGCG
ATGGTCCTTCAGCCTCTCTTATGCTAGCGAGAAATGAGACAGGTGAG----TCATTCTTCATGTGTTTATTGTTC-TATC
ATGTAATGACCAGGCAGACGCTTGTTTGAAACAAATAGTTTGAGGCTACTTCCTGAGAAGAAAAGCGGGCTTTACTTAGG
AAGTAAAGAGTGGCCGGTCCTTTGCTATGGTCAAATAGTCAAATCTATTCATAGCGTTACCTTCAGAAACTCTAAACACA
TCATTAGCAAAAAGATTTTCCCTACATGTATGAATATGATCTCTCATCTCACGCAATCCTCTGTCTTACAAGTTTATGCT
TACTGCGTTTGAAATTTGTGAAGATATTCGAGGGTAGGACTGATCAATGCAAAGCTTCTAGCAGTTCCAGTTTATTTTTC
AGCTCTTGCACAGTGTAGCTTGTGACCTGCATTTAGCTATT-TT-GGGTCAGCCCTCCTGCTGGCCACTAGCTGTACATA
ACTTGTTTTCCTTCATTAAGTAATTAGGCAGACCTCATGCATGTCTGTTTAAAACACTAGCTTGTAGTAATTGCTATTTG
ATACTACCTTCTAACAGATCTTCAGAGAACTCATGAACCAGAAGATGTCCAAGACGCTATTTCTCTTGAAAGCTTGCATC
TGAAAACTGATACACTAGTTTCGAAGCCTTTGCCGCAGTTGGTGCCACCTTCAGCAGCATCGCTTAAGGAGAGGGAAGCT
GCTTATCGGGCTGCTCGTGAGCGAATCTTCTCTTCACATGAAGCCAAGGGAAACGACACATCAGCAGCAAAATCTAGGCA
TGTTCCTGCTGTTGCTCAACGGATGATCGCACACGCACTTGGTAAGAGAGTTGAAGATCCAACAGAGAGAGCTGCCTTGG
AGACAGTCAAAGGGAAGGAACAGCTGGTAAATGGACGAACTAGTCCCACGAGTAAAGAAGCAGTTAAACACAACTCAAGC
TCACCTGGTGGTGGTCCGCATCGGAACCCATCTACTCGAAGCCGTCCTACACCTACTGCTAGCGCCGAGACGCTGAAGAA
AGAGCAGACTGGAGCGGCTAAAAGGATGTTTGCACATGCGTTGCGGCTCCCCGGTGTTGAAATACCCAATGGCGCAGCAC
GAAAACCCAAGTAAGAAGGGCTAGCTGGAGATGAATGAAATTCCGAGAATGCATGGGCCTTGGGGTTGCCTTGACTGCCG
TGCCCCGCGCGATGGAGCTGGAAGCCCTTGCGGTGCCAGCCTGCTCTTAT-----GGAGTGCCACTTGTGATGGATGTTA
GAAGCAGATGAAAGGGTTGGCTGTTGAAGTCAGTCGGTGTGAGACAA-------TGCACCGTAACC-TTTTTTTGCCTCC
CTTGACTAGAGTTGATTCGAAGAAAACCCGAGGGCG-CGCGGCGAGAAGGCTGAATCCAGAGTGGCCGTTCCCTGTTACG
--TAGAATTGTGCTAGTAAGTACGTACGTAGTAGCGTTGGTTGCTTGCCAACAGAAAGAAATGTTCTTGTTAGCGCCTAC
CCCATTCTAGCAAGTGTTTTTGGCTCTTCAACCTTCTGTGTCGT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3A_506
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GGTACAAACTAAATAAATCCGGTGCACATCACGCCCGTACATTGTTCATC
TGACGGTCGGGTAGGAAGATAGGTATCCTCTGCCCGGCTATCC-----------CCTCCTCCCCGGTTTCAATCCTGTCT
CT--GAAGACTCCTCCCAAATTCTCAACTGCTGCCGCTGC---------CGCCGCTGCTTCTTCCTCCTACTC----TCG
GCGACTCGTCTCCACAATTCACCCCCCCTCTTCGTCGTCGTCGGCGGCGGGGACGACGGGGCACAGCCGAGAACCCAGGC
TGCCAGGACCAGCGGCAACTCCAAGCTTGCTTCTTGGTAAGGGA--AGGAACCCTAGCTTGCTTCGCCGATTGATTGATT
CGATTCGATTCACCGGACAGTTCCTTTGTTCGTCTCATCCTTCGCTCAGTTCATAATTCGATTCGATTCGAGTAGGTGCT
TCTTCTTCTTCTTCTGCTTCAGCGCAGCGCGAGATCCGTCGGAGCCGAGCCGAGCTGAGCTGACCCCATTGGACTGAACT
TTAGGGGGCGTAATGGACAACACCCAATTCGCCATGGTAATTCCTGCTTACACGAGCTGCGCAAAGGAATCTAATTCTGT
TTCTAACCTTCTGTGTGTGATAGAGTGTCCTTACCTGCCTCTGTTTTTC----TGCTTCTGGTGGAGCAGATTGAGGAGC
TGGCCTCGCTCATCAAGGACAACCTCTACAGCAAGCACCTCGTCCTCTCCACCGAGGAGATCCTCGTCACCCTCCTACAG
CACAGCTACCTCGATGACGACGAT------GGACACGACCGCGCCACAACTGAAACAAGTCGCGGGGCAGCTGGGAATAC
CATAGAGCTCCAGCCCACCAGCTCCTACAATCGCCTCCTTTTGCATCGTCTCGCCGACATATATGGGTATAAAAAACCTC
CCTGATGCATTCATCTCCGTCCGCTTCACTGTGCTGACATGCTAAAGTCACTGCGGCGACCACTCCGTTTGCTAA-TTTT
ATCTGCTTCTGTGTCGCTGCTAGGTTTGCTCACGAATCTGTTGGCGAGGGTGAGGATCGGCATTTGGTTCTCCAGCGCTG
CCCTGAGACAGCCATGTATGTCGTCAAC------------CTCCCTTATTGAAACCTTTCTTGTCTGGCTCGATTCAGCA
ACGTCGTACATGTCTACACCATGCCAAAAATGTGCTAGTGTGTTTCAAGCAGGGTGTCTCACTACCAGTGCCAATGTTCT
CTTTTTCCCTGCTATATATTTAACTCGCCACACATAGGTCGGTGGTTGGCTAAA-TTCAGAGCTGTTATTATGCTTGCCC
TGTTTTGAATTTAGTTATGCTATATG-TTTCAGCCCTCCCGTCCTTGTCAGCGATGTGTTGTGGAATTATGACGACGGTG
ATGGTCCTTCAGCCTCTCTCATGCTAGCGAGAAATGAGACAGGTGAATGAATCATTCTTGATGCGTTTATTTGCTGTATC
ATGTAGTGATTAGGCAGATGCTTGTTTGGAACAAAGAGTTTGAGGCTACTTCTTGAGAAGAAAAGCGGGATTTACTTAGG
AAGTAAAGAGTGTCCAGTCCTTTGCTATGGTCAAATAGTCAAATTTATTCGTAGTGTTACCTTCAGAAACTCTAAACACA
TCATTAGCAAAAAGAGTTTCCCTACATGTATGAATATGATCTCTCATCTCACGCAACCCTCTGTTTTACAAGTTTATGCT
TACTGCGTCTG-AATTTGTGAAGATATTCGACGGTAGGACTGAGCAATGCAAAGCTTCTAGCAGTCCCAGTTTATTTTTC
AGCTCTTGCACAGTGTAGCTTGTAACCTGGATTTAGCTATT-TTTGGTTCAGCCCTTCTGCTGGCCACTAGCTTTACATA
ACTTGTTTTCCTTCATTAAATAACTAGGCAGACCTCATGCATGCCTGTTTGAAATACTAGCTTGCAGTAATTACTAATTA
ATACCATCTTCTTTCAGATCTTCAGAAAATTTATGAGCCAGAAAATGTCCAAGACGCTATTTCTCTTGAAAGCTTGCATC
TGAAAACTGATACACCAGTTTCGAAGCCATTGCCGCAGTTGGTGCCACCTTCAGCAGCATCGCTTAAGGAGAGGGAAGCT
GCTTATCGGGCTGCTCGTGAGCGAATCTTCTCTTCACATGAAGCCAAGGGAAACGACACATCAGCAGCAAAATCTAGGCA
TGTTCCTGCTGTTGCTCAACGGATGATCGCACACGCACTTGGTAAGAGAGTTGAAGATCCAACAGAGAGAGCTGCCTTGG
AGAAAATCAAAGGGAAGGAA---CTGGTAAATGGACGAACTAGTCCCACGAGTAAAGAAGCAGGGAAACACAACTCAAGC
TCACCTGGTAGTGGTCCGTGTCGGAACCCATCTGCTCGAAGCCGTCCTACACCTACTGTTAGCGCCGAGACGCTCAAGAA
AGAACAGACTGGAGCGGCTAAAAGGATGTTTGCACATGCGTTGCGGCTCCCTGGTGTTGAGATGCCCAATGGCGCGGCCC
GAAAACCCAAGTAAGAAG----AGCTGGAGATGAATGAAATTCCGAGAATGCATGGGC--TGGGGCTGCCTTGACTGCCG
TGCCCCGTGCGATGGAGCTGGAAGCCCTTGCTGTGCCAGCCTGCTCTTATCTTATGGAGTGGCACTTGTGATGGATGTTA
GAAGCAGATGAAAGGATTGGCTGTTCAAATCAGCCGGTGTGAGACAA-------TGCGCCGTAACCTTTATTTTGCCTCC
CTTGACTCGAGTTGAGTCGAAGAAAAACCTGAGGGCACACGGTGAGAAGGCTGAATCCAAAGTGGCCGTTCCCTGTTAGA
ATTAGAATTGTGCTAGCAAGTA--------GTGGTGTTGGATGTTTGCCAACAGAAAGAAATGTTCTTGTTAGCGCCTAC
CCCAGTCCAGTGAGTGTTTTTGGCTCTCCAACCTGCTGTATCGTT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CTTAGCTTATATACTACCCTCTCTTTGCAGAGGGAGTACCACTTTGGTGTATCTTACTATCTTAGTTTGGTTTTGAA
GGGCTTAGTTCCCAAACAATGTTTTATAGTTGATGCATGAAATTCGTTCTTTTTTCGAGAAAAAGCACATTGAAAAGAGA
GTTTTGGTTAC--ATTCCTCCTAAGAGGTAGTCCCTCTGTTCCCATAGAACAGCTGTACATTATGGGACGGGGTAGGTTA
CAAGCATGGAACAAAGACTAATGCAAATCACAGGTCGTCAGTAGAACAGCTGTAC--------------------GCCCA
TAGCCTGGCCTCATTTTTGATTCTACAGTTGCACATGCAGTCATTTCGGTGCTTCCAAGCGTCGCGGAGGCAA-------
----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--S----------S---------S--SS-----------S--S----S-SSSSS----SSSS--------
------S--------S--S----S--------------------------------------------------------
---------------------------------SSSS--SS-SSSSSSSSSSSS--------------------------
--------------------------------------------------------------------------SS----
----------S----------------------S--------------------------S-------------------
--------------------S---------------------SSSS-----------------S-S--------------
------------------S-----------S-------------------------------------------------
-----------------S---------------------------S-----S-----------S--------S-------
-----------S---------------------------SSSS-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-------S-S--S---------------
-----------------------S--S-------------------------S-S-----------S-------------
------------------------S-----------------------------------S---------------S---
---SS----------S-SS--------------------------------------S-S------S-------------
--------------------------------S-----------------------------------------------
------S--------------------SSSSSSSSSSSS-----------------S-------S-------------S-
----------------------S---------------------S-----------------------------------
-------S------S-S-------------------------------------S-------------------------
-----------------------S--S--S---------S--------------------S-------------------
----S---------------------------------------------------------------------------
------------------S-------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------S---S-------------------------------S----------------S-----------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------S-----S---------------------S--S--S------------
--------------S--------------------S--------------------------------------------
---------------------------------S----------------------------------------------
----------------------------------------------S---------------------------------
-------S------------------------------------------------------------------------
---------------------------------------S--------------S-------------------------
--------------------------------------------------------------------------------
----------------------------S--------------------------------------------S------
----------------------------S------------------SSSSSSS--------------------------
-------S----------------------------------------------------------S-------------
---SSSS-S--S------S--------------------------S-------------------S--------------
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------S--S------------------------------------------S-------------
S-----S------------S---------S--S---------------------S---------S-----------S---
----S-----SSS-------------S---S------S----------S-S-SS-SSSS----SS----------S----
------S------S---------------S---------------------S---SSSSSSSSSSSSSSSSSSSS-----
-------------------------------------------------------------------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_159
--------------------------------------------------------------------------------
-----------------------------------------------------------ACCGCACATGAAGGATTGGT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_1265
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TGTCACTCTCCTGCAG
CAAC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GGGACAAACTTTT
TCGGCCG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_1880
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TGTCCTTGTCAGCGATGTGT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_1629
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AGCCATGTATGTCGCCGAAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_2676
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GCATGAAGCCAAGGGAAACG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_1634
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TGTATGTCGCCGAATGTGCT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_3667
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CTAGCATTCGACAG
GGCCTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
