>input_sequence_40232
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------------------------------------------------ATGGATCAGGACCTGTCGTCGGAGCTGGACCC
AGCGCTCCTCCTCTCCACGTCGGCGTCCTCGTCGTCGCCGCAGGACTCCGCGTCGCCGTCCTTCTCCTTCTACCCGCCCT
CCCCTCCGGAGTACACCCTCGCCGTCACCAACCTCTCCTGCCCAGCGCCGCGCCGCGCCAACGCCACCCTCCTCCCGAGG
TTCTTGCCCTCCTTCTCCGCGGCCCCGCCCCCCGCCGCCGAGGGGCTCCTCAACTCCGTCTCCTTCATCGCGTCCAGCTC
AAGCATCCTGGCCGTCGTGGGCCCCAGCGGCGCCGGCAAGTCGACGCTCCTCCGCATCCTGTCCGGCCGCGGCACCGGCT
CGGAGATCGCCAAGGCGCCCACCGTGTGCATCAACGGCAACGCCGTCACCTCCCGCGCGCAGCTGCGCCGGACGTGCGGC
TTCGTGACGCAGGACGACAACCTCCTGCCGCTGCTCACCGTCCGCGAGACCATCCTCTTCGCCGCGCGCTTCAGGCTCGG
CTCCTCCGTGACCGCGCGGGAGCGGCACGAGCGGGTGGAGGCGCTCATGCAGGAGCTAAGGCTGTCGGAGGTGGCCGACA
GCTACGTCGGCGGCGGCGGTGGCGAGGCCATGTCGCCGTCCCGCGGGGTGTCCGGGGGCGAGCGCAAGCGGGTGTCCATC
GCGGTGGACATGGTGCACGACCCGCCGGTGCTGCTGCTGGACGAGCCCACGTCGGGGCTGGACAGCCGGTCGGCCGTGGA
CGTGCTGGCGCTGCTGCACGAGGTGGCGCGCGCGCGGCGGCAGGTGGTGGTGCTCAGCATCCACCAGCCCAGCTACCGCA
TGCTCGGCTACATCTCCTCGCTGCTGCTGCTCTCCCGCGGCGCCGTCGCGCACTGCGGCTCGCTGAGGTCGCTCGAGGAC
GCGCTGGCGAGGCTGGGCCACAAGATCCCCGCGCAGCTCAACCCGCTGGAGCTGGCCATGGAGGTCACCGAGCAGCTCCA
GGCGGACCGCGCCAAGTTCGCCGAGCTCAGGGACAGCGACCAGTACGAGGAGGAAAGGGAAAGCCCCGGCGTCGCCAACG
GCAGCCTTCAGGTGCCCGAGCACGGGTACGGCAGCCGCGCCGTGGAGGTGGCGGCGCTGACAGTGCGCTGCTGGCGCACC
ATGTACCGCACGCAGCAGCTCTTCGCGGCGCGGGCGGCGCAGGCGGTGGTCGGCGGCCTGGGCCTCGGCAGCGTCTTCTT
CCGCGTGCGCGCCGACCCGGACGGGCTGGCGCTCCGGCTGGGCCTCTTCGCCTTCAGCCTCAGCTTCCTCCTCTCCTCCA
CCGTGGAGGCGCTGCCCATCCTCCTCCACGAGCGGCGCGTGCTGATGCGCGAGGCCTCCCGCCGCGCCTACCGCCTGTCC
TCCTACGTGGTGGCCAACGCGCTGGTGTTCGCGCCGTGCCTGCTCGCCGTGGCGGTCCTCTTCTCGGCGCCCGTGTACTG
GCTGGTGGGCCTCCGCGCCTCCCTGGCCGCCTTCGGGTTCTTCGTGCTCGCCGTGTGGCTCATCGTGCTCATGGCCAGCT
CCCTGGTGCTCTTCCTCAGCGCCGTGTCCCCGGACTTCATCCTCGGCAACTCGCTCATCTGCATCTTCCTGGGCGTCTTC
TTCCTCTTCTCTGGCTACTTCATACCCAAGGAGAGCATCCCGAGGTACTGGGCCTTCATGTACTACGTGTCCATGTACAG
GTACCCGCTGGACCTGCTGCTCATCAACGAGTACGGGGGCGGCGCCAGGGACAAGTGCGTGGCGTGGGTGGGAGGGGACG
CCATGAACGGTGACGGCGTTTGCTTGAGCACCGGAGGCGACGTGCTGAGGGGGAGAGGGGTCGACGAGGGCATGAGGTGG
GTCAATGTGGGTGTCATGCTGGGCTTCTTCCTCGTGTACAGGATCATGTGCTGGGCTGTGCTGGTGAGGAGGGCGTCCAA
GACCACTCTCTGA-------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G240500
GGTCCAACAGCTGAGCCAGAGATAACGGGTGCAGAACATTTCGGATGCTAATTGTAGATTGAGATGCGAATTAGCCATGC
AAGAGTTAAGCTTTATTTTCATTGTGCTGAGTGCCTTTTGTCATTTTTGAATTTCTACCATCATGCCTGCCTGCT----T
TTTGTTTCATCCAGTTTTGTTGTAAACTGCACATATGTCTGGTGTGCTTTCCAGTTATCCAAATTCTTAGG-GAAAAAAA
CTCG------------------------------------------------------------GTGGAGAGGAAAGGAG
TGCATTTGTTTCGTCCACCTCAGCTGGCATGGTATGGAGAACGGTTTGTTTGGCCGTGATCGATGTTTCCCGTCTCTTGC
ATTTTACCGACGATGGCTGGCATACGCTGATGCTATGCGATTTTGCGGAGTGTCTTGTCGTCGACAACATAATCTGGGTG
TAGCCAGGAGTCCAAGTAAGAAGAGAAGTCTCCTAGTATGTGCCCCGAC----CACACGTCAAGAAACAAGAGCCGATTT
AGATTTGGTTAAGCGCGCGCGGTTAGGTCCAACCGCCAAGACACAGCACACAACACAAATGACACCAACATTCAGTTAGG
TCACAGTAGCTCACAAGTCGCAACGCCCCCTCACCCATACAGACACCATTTCCGTCACTCTTTGCTCACTTCTGCCTTCC
ATTCCTAGCGTCCACCTTGACCGGCGATCACCTACTAGAAGATCTTAACCCCTTGT-----ACCACCAAGAATTAACATT
TATAGTTGCAATCGGTCTGAA----------CACCATTGCCTCTGTTCTAGAAGCGCATC----AGCTAGCTACGAACAA
TCTCAACCCATGGCGAATCGTGGCGTGCGTGCAAAAGTGCACAACACGTTCAAGAAAACCGATTTCTAGTAGTACCGCTT
CCTTAAGAGAGCTGCTGATTGTCGAGGCTATTTGTAGTTTCTCAAGCTGTTTCCCGCTCATCTACTGCTTCCGCAATCCA
CACATCGACCCCTCTCACGCGCACTCGCGGCTCGCCTCGCCCGCAGCCATGGATCAGGACCTGTCGTCGGAGCTGGACCC
AGCGCTCCTCCTCTCCACGTCGGCGTCCTCGTCGTCGCCGCAGGACTCCGCGTCGCCGTCCTTCTCCTTCTACCCGCCCT
CCCCTCCGGAGTACACCCTCGCCGTCACCAACCTCTCCTGCCCAGCGCCGCGCCGCGCCAACGCCACCCTCCTCCCGAGG
TTCTTGCCCTCCTTCTCCGCGGCCCCGCCCCCCGCCGCCGAGGGGCTCCTCAACTCCGTCTCCTTCATCGCGTCCAGCTC
AAGCATCCTGGCCGTCGTGGGCCCCAGCGGCGCCGGCAAGTCGACGCTCCTCCGCATCCTGTCCGGCCGCGGCACCGGCT
CGGAGATCGCCAAGGCGCCCACCGTGTGCATCAACGGCAACGCCGTCACCTCCCGCGCGCAGCTGCGCCGGACGTGCGGC
TTCGTGACGCAGGACGACAACCTCCTGCCGCTGCTCACCGTCCGCGAGACCATCCTCTTCGCCGCGCGCTTCAGGCTCGG
CTCCTCCGTGACCGCGCGGGAGCGGCACGAGCGGGTGGAGGCGCTCATGCAGGAGCTAAGGCTGTCGGAGGTGGCCGACA
GCTACGTCGGCGGCGGCGGTGGCGAGGCCATGTCGCCGTCCCGCGGGGTGTCCGGGGGCGAGCGCAAGCGGGTGTCCATC
GCGGTGGACATGGTGCACGACCCGCCGGTGCTGCTGCTGGACGAGCCCACGTCGGGGCTGGACAGCCGGTCGGCCGTGGA
CGTGCTGGCGCTGCTGCACGAGGTGGCGCGCGCGCGGCGGCAGGTGGTGGTGCTCAGCATCCACCAGCCCAGCTACCGCA
TGCTCGGCTACATCTCCTCGCTGCTGCTGCTCTCCCGCGGCGCCGTCGCGCACTGCGGCTCGCTGAGGTCGCTCGAGGAC
GCGCTGGCGAGGCTGGGCCACAAGATCCCCGCGCAGCTCAACCCGCTGGAGCTGGCCATGGAGGTCACCGAGCAGCTCCA
GGCGGACCGCGCCAAGTTCGCCGAGCTCAGGGACAGCGACCAGTACGAGGAGGAAAGGGAAAGCCCCGGCGTCGCCAACG
GCAGCCTTCAGGTGCCCGAGCACGGGTACGGCAGCCGCGCCGTGGAGGTGGCGGCGCTGACAGTGCGCTGCTGGCGCACC
ATGTACCGCACGCAGCAGCTCTTCGCGGCGCGGGCGGCGCAGGCGGTGGTCGGCGGCCTGGGCCTCGGCAGCGTCTTCTT
CCGCGTGCGCGCCGACCCGGACGGGCTGGCGCTCCGGCTGGGCCTCTTCGCCTTCAGCCTCAGCTTCCTCCTCTCCTCCA
CCGTGGAGGCGCTGCCCATCCTCCTCCACGAGCGGCGCGTGCTGATGCGCGAGGCCTCCCGCCGCGCCTACCGCCTGTCC
TCCTACGTGGTGGCCAACGCGCTGGTGTTCGCGCCGTGCCTGCTCGCCGTGGCGGTCCTCTTCTCGGCGCCCGTGTACTG
GCTGGTGGGCCTCCGCGCCTCCCTGGCCGCCTTCGGGTTCTTCGTGCTCGCCGTGTGGCTCATCGTGCTCATGGCCAGCT
CCCTGGTGCTCTTCCTCAGCGCCGTGTCCCCGGACTTCATCCTCGGCAACTCGCTCATCTGCATCTTCCTGGGCGTCTTC
TTCCTCTTCTCTGGCTACTTCATACCCAAGGAGAGCATCCCGAGGTACTGGGCCTTCATGTACTACGTGTCCATGTACAG
GTACCCGCTGGACCTGCTGCTCATCAACGAGTACGGGGGCGGCGCCAGGGACAAGTGCGTGGCGTGGGTGGGAGGGGACG
CCATGAACGGTGACGGCGTTTGCTTGAGCACCGGAGGCGACGTGCTGAGGGGGAGAGGGGTCGACGAGGGCATGAGGTGG
GTCAATGTGGGTGTCATGCTGGGCTTCTTCCTCGTGTACAGGATCATGTGCTGGGCTGTGCTGGTGAGGAGGGCGTCCAA
GACCACTCTCTGATCCTTCCTTCTT--------TCCCTTGTTTTTGTTTGTCAGCTTCATTGGTTTGGATCATATATACA
----A-GCCGCGTTATTTGTT---TGCTTTTGTCCTGTAGTTTGCTCTTTGTTTAGATGTGTTGAGTAAGAAGTGCAATG
CAAGTTTGCACTCATGTGTGTAAAATGCTTGATTTGGGTTCATGAAAAGAAAATTTCAACCTGTCTACCTGAACTACGGG
----------------CGCTTCTATTCATTGGGCTGATAATC-GACATGGCACCCGTACGGTTGGCGTGCGGGTAATGCT
CCCCCAAACTCGTATCCGTCCCAATA-TTTTTCTCTTAAATCGATACCT-------------------------------
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------------------------------------------------------------------GTGCCCGCACCTCG
GGTTTTGTATTGTTCCCATACCCATAGCCAGCCACGCGTAATAACCGTGGGTAAAATTACCAATCTCGTTCACCTTTCAA
TTCACATTTTACCATGTATAAATTTCAGCATTTTAGTATGTAAAACACAACATTTCAACATGCATATTTAGCATTTCAGC
CCAG-ACGAGTTGGGGAGATGGGGTTTGTGTTCTATGA------------------------------------------
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-------------------------------------------------------------------------------G
TGTGACGAGGCAATGGATGGGTGAGGGGAGAGTATTTTGTGTGTGGGTTGTGGCTGTTAGGCTAGGGT-TT---------
---------------TAGGGGACCTACATGTTAGATGTGGTAATATACGGGTAGGTGGGTACACAGGTATGGGTATTCCC
TTTTTGTACCCATGCCCGGCTTACCTGCTGGGTGCATTTTTTT---ATTTACAGATCCATGGGTATTTAACTTTTCCAAA
CCCTTACCCTAATAGGGGTTTTACCCGTCAAGATTGCGGGTAGCGGGTACCCATTGCCATGTCGAGCTGAGATTTCTGCG
TGTGTCGCCTTCATGACAG---TCAGATCTGCTTTTGATT-GACGGCTCAGAAGGAACAAC-TTTTTCGTGTTTTTTCAT
TGACGTGGACCAGTTTGATTTACAAAAAAG--CACCCTAAAAGAAACTACAAACCA-AACAATATAACATTTGCAGTTGC
AAACCTATAGCTTTAGATTTTC
>chr1B_1
GGTCCAAAAGCCGAGCCAGAGATAACGGGCGCAGAACATTTTGGATGCTAATTGTAGATTGAGATGCGAAGTAGCCATGC
AAGAGTTAAGCTTTATTTTCATTGTGCTGAGTGCCC-TTGTCATTTTTTAATTTCGACTATCCTGCCTGCCTGCCTTCAT
TTTGTTTCATCCAGTTTTGTTGTAAACTGCACATATGTATGGCATACTTTCCAGTTATCCAAGTCTTCGGG-AAAAAACT
CAGGTCGCGTGGAGGTGATGCTGATCAGTGTACATGCATTCTCTTCTCGCTACCATTTTGTACAGTGGAGAGGAAAGGAG
CGCATTTGTT-CGTCCACCTCAG------------------CGGTTTGTTGGGCGGTGATCGATGTTTCCCTTC-CTTGC
ATTTTACCGACGATGGCATATGCGTT----TGCTCTTCGATTCTGCGGAGTGTGGTGTCGTCGACAACATAATCTGGGTG
TAGCCAGGAGCCCAAGTTGGAAGAGAAGTC----AGTATGTACCCCGAC----CTCACGTCAAGAAACAAGAGCCGATTT
AGATTTGGTGTTAAGCGCGCGGTTAGGTCCAACCGCCAAGACACATCACACAACACAAATGACACCAACATTCAGTTAGG
TCACAGTAGCTCACAAGTCGCAACGCCCCCTCACCCATACAGACACCATTTCCGTCACTCTTTGCTCGCTTCTGCCTTCC
ATTCCTAGCAGCCACCTTGACCGGCGATCACCTACTAGAAGATCTTAGTACCCTTCAGATCACCAAGAATTACTAACATT
TATAGTTGTAACCGGTGTGAAAATAGCTTAGCACCATTGCCTCTGTTCTAGAAGCGCAT----TAGCTAGCTACGAACAA
TCTCAACCTATGGTGAATGGTGGCGTGCGTGCAAGAGTACACTACACGTTCAAGAAAACTTC--------AGTACTGCCT
CATTCAGAGAGCTA---ATTGTCGAGGCTATTTGTAGTTTCTCAAGCTGTTTCCCGCTCATCTACTGCTTTCACAATCCA
CACATCGACCCCTCTCACGCGCACTT-------GCCTCGCCCGCAGCCATGGATCAGGACCTGTCGTCGGAGCTGGACCC
GGCGCTCCTCCTATCGACGTCGGCGTCCTCGTCGTCGCCGCAGGACTCCGCGTCGCCGTCCTTCTCCTTCTACCCCCCCT
CCCCTCCGGAGTACACCCTCGCCGTCACCAACCTCTCCTGCCCCGCGCCGCGCCGCGCCAACGCCGGTCTCCTCCCGAGG
TTCTTGTCTTC---CTCCACGCCCCCGGCCGCCGAGGCCGAGGGCCTCCTCAACTCCGTCTCCTTCACCGCGTCCAGCTC
CAGCATCCTGGCCGTGGTGGGCCCCAGCGGCGCCGGCAAGTCGACGCTCCTCCGCATCCTGTCCGGCCGCGGCACCGGCT
CCGAGATAGCCAAGCCGCCCACCGTGCGCATCAACGGCCACGCCGTCACCTCCCGCGCGCAGCTGCGCCGGACGTGCGGC
TTCGTCACGCAGGACGACAACCTCCTGCCGCTGCTCACCGTCCGCGAGACCATCCTCTTCGCCGCGCGCTTCAGGCTCGG
CTCCTCCGTGACCGCGCGGGAGCGGCACGAGCGGGTGGAGGCGCTCATGCAGGAGCTGCGCCTGTCCGAGGTGGCCGACA
GCTACGTCGGCGGCGGCGGCGGCGAGGCGATGTCGTCGTCCCGCGGGGTGTCCGGGGGCGAGCGTAAGCGGGTGTCCATC
GCGGTGGACATGGTGCACGACCCGCCGGTGCTGCTGCTGGACGAGCCCACGTCGGGGCTGGACAGCCGATCGGCCATGGA
CGTGCTGGCTCTGCTGCACGAGGTGGCCTGCGCGCGGCGGCAGGTGGTGGTGCTCAGCATCCACCAGCCCAGCTACCGCA
TGCTCGGCTACATCTCGTCGCTGCTGCTGCTCTCCCGCGGCGCCGTCGCGCACTGCGGCTCGCTCAGGTCGCTCGAGGAC
GCGCTGGCGAGGCTGGGCCACAAGATCCCCGCGCAGCTCAACCCGCTGGAGCTCGCCATGGAGGTCATCGAGCAGCTCCA
GGCGGACCACGCCAAGTTCGCTATGCTCAGGGACAACGACCAGTACGAGGAGGAAAGGGAAAGCCCCGGCGTCGCCAACG
GCAGCCTTCAGGTCCCCGAGCACGGGTACCGCAGCCGCGCCGTGGAGGTGGCGGCGCTGACAGTGCGCTGCTGGCGCACG
ATGTACCGCACGCAGCAGCTCTTCGCGGCGCGGGCGGCGCAGGCAGTGGTCGGCGGCCTCGGCCTCGGCAGCGTCTTCTT
CCGCGTGCGCGCCGACCCGGACGGCCTGGCGCTCCGGCTCGGCCTCTTCGCCTTCAGCCTGAGCTTCCTCCTCTCCTCCA
CCGTGGAGGCCCTGCCCATCCTCCTCCACGAGCGGCGCGTGCTGATGCGCGAGGCCTCCCGCCGCGCCTACCGCCTGTCC
TCCTACGTGGTCGCCAACGCGCTCGTGTTCGCGCCGTGCCTCCTCGCCGTGGCGATCCTCTTCTCGGCGCCCGTGTACTG
GCTGGTGGGCCTCCGCGCCTCCCTCGCCGCGTTCGGGTTCTTCGTGCTCGCCGTGTGGCTCATCGTGCTCATGGCCAGCT
CCCTGGTCCTCTTCCTCAGCGCCGTGTCCCCGGACTTCATCCTCGGCAACTCGCTCATCTGCATCTTCCTGGGCGTCTTC
TTCCTCTTCTCCGGCTACTTCATACCCAAGGAGAGCATCCCGAGGTACTGGGCCTTCATGTACTACGTGTCCATGTACAG
GTACCCGCTGGACCTGCTGCTCATCAACGAGTACGGGGGCAGCACCAGCGAGAAGTGCGTGGCGTGGACGGGAGGGGACG
CCATGAACGGCGACGGCGTGTGCTTGAGCACCGGAGGCGACGTGCTGAGGGGCAGAGGGGTGGACGAGGGCATGAGGTGG
GTCAACGTGGGGGTCATGCTGGGCTTCTTCCTGGTGTACAGGATCATGTGCTGGGCTGTGCTGGTGAGGAGGGCGTCCAA
GACCACTCTCTGATCCTTCCTTCCCTCCCTCCCTCCCCTGTTTTTGTTTGCCAGCTTCACTGGTTTGGATCGGATCATAT
ATACAATCGGCGTTATTTGTTGTTTGCTTTTCTGCTGTACTTTGCTCTTTGTTTAGATGTGCTGAGTAAGAACTGCAATG
CAAGTTTGCACTCATGTGTGCAAAATGCTTGATTTGGGTTCATGAAAAGAAAATGTCAACCTGTCTACCTGAACCATGGG
CGTCCTTTTACGGAAAGGCTTCTATTCAGTGGGCTGATAATCTGACATGGCACCCGTAGGGTTCCGGTGCGGGTAATGCT
CACTCAAACCCGTATCCGTCCCAATA-CTTTTCTCCTAAATTCTTACTC-------------------------------
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------------------------------------------------------------------GTACCTGCACCTCC
GGTTTTATATTGTTCTCATACCCATACCCAGCCGCGGGTAATAACGGTGGGCAAAAATACCCATCCCGATCACCTTTCAA
TTCACATTTTACCATGTATAAATTTCAGCATTTCAGTATGTAAAACACACCATTTCAGCTTGCATATTTAGCATTTCAGC
CGAG-GCGAGATGGGAAGATGGGGTTTGTGTTCTATGA------------------------------------------
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-------------------------------------------------------------------------------G
TGTGACGACACAATGGATGGGTGAGGGGAGAGTATTTTGTGTGTGGGTTGTGGCTATTAGGCTAGGGT-TTTCCATTTTT
TGTTAGTGAATGATATAGGGGACCTACATGTTAGATGTGCTAATATACGGGTAGGCGGGTACACGAGTATGTGTATTGTC
TTCCTGTACCTGTACCCGGCTTATCCGTTTGGTGCATTTTTTTTCCATTTACAGACCTATGAGTATTTAACTTTCCCAAA
CCCTTACCCTAATAGGGGTTTTACCCGTCAACATTGCGGGTAGTGGGTACCCATTGCCATGTCGAGCTGACATGTCTGCG
TGTGTTGCCTCCGTGACCA---TCAGATCTGCTTTTGATTGGACGGCTCAGAAGGAACAATATTTTTCGTCTTTTTTCAT
TGACGTGGACCAATTTGATTTAAGAAAAAG--CACCCTAAAGGAAACTGCAAACCA-AACATTATAACATTTGCAGTTGC
AAACCTATAACTTTACATTTTC
>chr1D_1
GGTCCAACAGCCGAGCCAGAGATAACGGGTGCAGAACATTTTGGATGCTAATTGTAGATTGAGATGCGAAGCAGCCATGC
AAGAGTTAAGCTTTATTTTCATTGTGCTG------------CATTTTTTAATTTCTACCATCCTGCCTGCCTGCT----T
TTTGTTTCATCCAGTTTCCTCGCAAACTGCACAGGTTTACAGTGTGCTTTCCAGTTATACGAGTCCTCGAAAAAAAAATT
CTGGTTGTGTGGAGTAGATGCAGATCAGGCTATGGGCATTCTCTTCTCGCTACCATTTTTTCCAGTGGAGACGAAAGGAG
TGCATTTGTT-CGTCCACCCG------------------------TTGCTTGGCGGTGATGGATGTTTCCCGTTGCTTGC
ATTTTACCGACGATGGCTGGCATACGCTGATGCTCTGCGATTTTGCGGAGTGTCTTGTCGTCGACAACATAATCTGGGTG
TAGCCAGGAGTCCAAGTAAGAAGAGAAGTCTCCCAGTATGTGCCCCGACCACCCACACGTCAAGAAACAAGAGCCGATTT
AGATTTGGTTAAGAGCGCGCGGTTAGGTCCAACCGCCAAGACACAGCACGCAACACAAATGATACCAACATTCAGTTAGG
TCACAGTAGCTCACAAGTCGCAACGCCCCCTCACCCATACAGACACCATTTCCGTCACTCTTTGCTCGCTTCTGCCTTCC
ATTCCTAGCAGCCACCTTGACCGGCGATCACCTACTAGAAGATCTTAGTACCCTTCAGATCACCAAGAATTACTAACATT
TATAGTTGTAACCGGTGTGAAAATAGC-TAGCACCATTGCCTCTGTTATAGAAGTGCGCTAGCTAGCTAGCTACGAACAA
TCTCAACCTATGGCGAATGGTGGCGTGCGTGCAAGAGTGCACTACACGTTCAAGAAAACTTC--------AGTACTGCCT
CATTCAGAGAGCTA---ATTGTCGAGGCTATTTGTAGTTTCTGAAGCTGTTTCCCGCTCATCTACTGCTTCCACACTCCA
CACATCGACCCCTCTCACGCGCACTT-------GCCTCGCCCGCAGCCATGGATCAGGACCTGTCGTCGGAGCTGGACCC
GGCGCTCCTCCTCTCCACGTCGGCGTCCTCGTCGTCGCCGCAGGACTCCGCGTCGCCGTCCTTCTCCTTCTACCCGCCCT
CCCCTCCGGAGTATACCCTCACCGTCACCAACCTCTCGTGCCCAGCGCCGCGCCGCGCCAACGGCGCTCTCCTCCCG---
TTCTTGCCCTCCTTCTCCGCGGCACCGGCACCCGCCGCCGAGGGGCTCCTCAACTCCGTCTCCTTCACCGCGTCCAGCTC
CAGCATCCTGGCCGTGGTCGGCCCCAGCGGCGCCGGCAAGTCGACGCTCCTGCGCATCCTGTCCGGCCGCGGCACCGGCT
CCGAGATCACCAAGCCGCCCACCGTGTGCATCAACGGCCACGCCGTCACCTCCCGCGCGCAGCTGCGCCGGACGTGCGGC
TTCGTCACGCAGGACGACAACCTCCTGCCGCTGCTCACCGTCCGCGAGACCATCCTCTTCGCCGCGCGCTTCAGGCTCGG
CTCCTCCGTGACCGCGCGGGAGCAGCACGAGCGGGTGGAGGCGCTCATGCAGGAGCTGCGCCTCTCCGAGGTGGCCGACA
GCTACGTCGGCGGCGGCGGCGGCGAGGCGATGTCGTCGTCCCGCGGGGTGTCCGGGGGCGAGCGCAAGCGGGTGTCCATC
GCGGTGGACATGGTGCACGACCCGCCGGTCCTGCTGCTGGACGAGCCCACGTCGGGGCTGGACAGCCGGTCGGCCATGGA
CGTGCTGGCGCTGCTGCACGAGGTGGCGCGCGCGCGGCGGCAGGTGGTGGTGCTCAGCATCCACCAGCCCAGCTACCGCA
TGCTCGGCTACATCTCGTCGCTGCTGCTGCTCTCCCGCGGCGCCGTCGCGCACTGCGGCTCGCTCAGGTCGCTCGAGGAC
GCGCTGGCAAGGCTGGGCCACAAGATCCCCGCGCAGCTCAACCCGCTGGAGCTCGCCATGGAGGTCACCGAGCAGCTACA
GGCGGACCGCGCCAAGTTCGCCGAGCTGAGGGACAACGACCAGTACGAGGAGGAAAGGGAAAGCCCCGGCGTCGGCAACG
GCAGCCTTCAGGTCCCCGAGCACGGGTACCGCAGCCGCGCCGTGGAGGTGGCGGCGCTGACAGTGCGCTGCTGGCGCACC
ATGTACCGCACGCAGCAGCTCTTCGCGGCGCGGGCGGCGCAGGCGGTGGTCGGCGGCCTCGGCCTCGGCAGCGTCTTCTT
CCGCGTGCGCGCCGACCCGGACGGCCTGGCGCTCCGGCTCGGCCTCTTCGCCTTCAGCCTCAGCTTCCTCCTCTCCTCCA
CCGTGGAGGCGCTGCCCATCCTCCTCCACGAGCGGCGCGTGCTGATGCGCGAGGCCTCCCGCCGCGCCTACCGCCTGTCC
TCCTACGTGGTGGCCAACGCGCTGGTGTTCGCGCCGTGCCTGCTCGCCGTGGCGGTCCTCTTCTCGGCGCCCGTGTACTG
GCTGGTGGGCCTCCGCGCCTCCCTGGCCGCCTTCGGGTTCTTCGTGCTCGCCGTGTGGCTCATCGTGCTCATGGCCAGCT
CCCTGGTCCTCTTCCTCAGCGCCGTGTCCCCGGACTTCATCCTCGGCAACTCGCTCATCTGCATCTTCCTGGGCGTCTTC
TTCCTCTTCTCCGGCTACTTCATACCCAAGGAGAGCATCCCGAGGTACTGGGCCTTCATGTACTACGTGTCCATGTACAG
GTACCCGCTGGACCTGCTGCTCATCAACGAGTACGGGGGCAGCGCCAGGGACAAGTGCGTGGCGTGGGTGGGTGGGGACG
CCATGAACGGCGACGGCGTGTGCCTGAGCACCGGAGGCGACGTGCTGAGGGGGAGAGGGGTGGACGAGGGCATGAGGTGG
GTCAACGTGGGGGTCATGCTGGGCTTCTTCCTCGTGTACAGGATCATGTGCTGGGCTGTGCTGGTGAGGAGGGCGTCCAA
GACCACTCTCTGATCCTTCCTTCC------------CCTGTTTTTGTTTGTCAGCTTCATTGGTTTGGATCATATATACA
----AATCGGCGTTATTTGTT---TGCTTTTCTGCTGTAGTTTGCTCTTTGTTTAGATGTGCTGAGTAAGAAGTGCAATG
CAAGTTTGCACTCATGTGTGTAAAATGCTTGATTTGGGTTCATGAAAAGAAAATGTCTACCTGTCTACCTGAACTATGGG
CGTCCTTTTACGGAAACGCTTCTATTCAGTGGGCTGATAATC-AACATGGCACCCGCAGGGCTCGGGTGCGGGTAATGCT
CGCCCAAACCCGTATCCGTCTCAATA-TTTTTCTCCTAAATCCATACCC-------------------------------
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------------------------------------------------------------------GTACCCGTACCTCG
GGTTTTATATTGTTCCCATACCCAT---------------------------------------CTCGGTCACCTTTCAA
TTCATATTTTACCATGTATAAATTTCAACATTTTATTATGTAAAACGCAACATTTCAGCATGTATATTTAGCATTTCAGC
CGTGCGCGAGATGGGGATATGGGGTTTGTGTTCTATGGCCCTGTTTGTTTCATAAGTCCTAGGACTTTTTTAAGTCCCAA
CTTATAAGTCCCGAGTCCCTACCTGTTTGTTTACAGGATTTATCATAGGCTAGAGGTTATTAAATGACATGCTAAAAGAC
CCAAATCACCACTATAAGTCCCTATAAGTTCCTCCCTGAGAGTCTTTTTTGATAAGTCCCAAATCACCACTATAAGTCCC
TATAAGTTCCTCCCTGAGAGTCTTTTTTGATAAGTCCCAAATCACCACTTTAAGTCTCTATAAGTCCCTCCTGTTTGGTT
TAGATGGGACTTATAGGGATTTTTTTAAGTCCCTAAACCAATAAGTCCCTGGAAACAAACACCCTCTATGAGTGTGAGTG
TGTGACGACGCAATGGGTGGCTGAGGGGAGAGTATTTTGTGTGGGGGTTGTGGTTGTTAGGCTAGGGT-TTTCATATT--
--TTAGTGAATGACATAGGGGACCTACATGTTAAATATGCTAATATACGGGTAGGCGGGTACACGAGTATGGGTATTG--
---------CCTTACCCGGCTTACCTGTTGGGTGCATTTTTTTT-CATTTACAGACCCATGGGTATTTAACTTTCCCAAA
CCCTTGCCCTAATAGGGGGTTTACCCGTCAACATTGCGGGTAGCGGGTACCCATTGCCATGTCGAGCTGATATTTCTGCT
TGTGTCGCCTCTGTGACCA---TCAGACCTGCTTTTGATTGGACGGCTCAGAAGGAACAACTTTTTTCCTCTTTTTGCAT
TGACGTGGACCAGTTTGATTTAAGAAAAAAAACACCCTAAAAGAAACTGCAAAACCGAACAATATAACATTTGCAGTTGC
AAACCTATAACTTTACATTTTC
>chr1A_3011
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------------------------------------------------------------------GGATCATCTATACA
----A-TCGGCCGTATTTGTT---CGCTTTTCTGCTGTATTTTGATCTTTGTTCAGATGTGTTGAGTAAGAAGTGCAATG
CAAGTTTGCACTTATGTGTGTAAAATGCTCGATTTGGGTTCATGGAAAGGAAATGTCAACTTGTCTACCTGAACTATGGG
CGTCCTTTTACGGAAACGCTTCTATTCAGTGGGCTGATAATC-GACATGGCAC------------GGTGCGAGTAATGCT
CACCCAAACCCATATCTGTCCCAATTGTTTTTCTTCTAAATTCATACTTGTACCCAGTGCCGGAGCTACAAAGAAAAAAT
TGGGCGGGCCAAGGTAATGAAGAGCACACAAAAATTGAACTGTATATACCATTTCAGTATGCATAGTGCATACTTTTGCT
CTCATTGGCCACAAGATCAACAGATACTTTTGCTCTCATTGACTATAAGATCAGCAGATGTGCGACACGTACTAAATAGC
ATAAGCCAAATATGTGGGCGTAATCCTGGATCTCACTGCAAGAATTCAATACCTTTAAATAGTACATGTTCATTTGGTTG
AAGTCCTTCATTTTGATTTGCTGCTGCTGTTGTTCCAATTCAACCAAGGGTAGAGGATGATCTGCTGGTGATGAAGGATC
TTCCTCGAGTTCATTCACATCATATCTTTTCCTTGAGTTCATTTCGCAAAAAAAGCATCATATCTTTTCCTTTTAAAACC
CAAATCAATTCCTCACTCCCCGCAAAAAAAAAAAAATCAATTCCTCACTAGCTACCTTTGTCCATGACAGATGACACCTA
AATTATAATTTATAAAGATCAGCTGACTGAACAAGTCTGTGCTACCAATTCCGCTCGTTGCTCTGCTTGCCTCCACTGCA
GGCTCGCCACCGCTAGTGCCTCCACATCAGATGGGGGATGGATCGGGGATCTCCACACTGTGGAGTTGCCACTACCTGCC
TAGCTCCGACTGCTTCCCTGACTGCTGGACCTCCGCCGTCGGCCGGTGCCGTGCTCTAGTACTGGACGAGGCGTAGAGAG
AGAATAGGAGATGGATGCGAGACAAGCCTGGCTGTGTTCAGATGTGTGTGTGCTGGTCTTTTCTTCCTCTTCTTTTTTTT
TGCGGGTGGTGTGCTGGTCTAACGGACTGGACTATGGCTTGCCAAGTGCCAACTGGGTGTGCTGCATATGTATATAACTT
ATTTTTAGTGATTTGTTGGGCGGGTCACGGCACGGGTTTTGCCCGTGAGTAGCTCCGCCAGTGCTTGTACCTGCACCTCG
GGTTTTATATTGTTCCCATACCCATACCCAGCCGTGGGTAATAACCA-GGGTAAAAATATCCATCTCGATCACCTTTCAA
TTCACATTTTATCATGTATAAATCTCAGCATTTCAGTATATAAAACACAAAAATTTAGCATGTATATTTAGCATTTCAGC
CGAG-GCAAGATGAGGAGATGGGGTTTGTGTTCTATGA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
TGTGACGACGCAATAAGTGGGTGAGGGGAGAGTATTTTGTGTGTGTGCTCTAGCTATTAGGATAGGGTTTTTCATTTT--
--TTACTGAATGACATAAGGGACATACATGTTAGATGTGCTAATATACGGGTAGGCGGGTACACAAGTATAGGTATTGCC
TTCCTATATCCATACTCGGCTTACTCGTTGGGTACATTTTTTG-CCATTTACAGACCCATAGGTATTTAACTTTTCCAAA
TCCTTAACCTAATAGGAGTTTTACCCATCAAGATTGTGGGTAGCGGGTACTCATTGCCATGTCGAGCTGACATTTCTGCG
TGTGCCGCCTCCATGACCATGGTCAAATCTGCTTTTGATTGGATGGCTCTGAAGGAACATAT---------TTTTTTCAT
TGACGTGGACCAGTTTGATTTAAGAAAAAG--CACCCTAATTGAAATCGCAAACCG-ATCAATACAACATTTGCAGTTTC
AAACCTATAACTTCACATTTTC
>SNPs
-----------S-----------------------------S----------------------------S---------
-----------------------------------SS-----------S-------------S-----------------
--------------------------------------S-----------------------S-S--SS---S-----SS
--S-----------------------------------------------------------------------------
----------S------------SSSSSSSSSSSSSSSSSS-------------S-------------------S-----
----------------------------------S---------------------------------------------
---------------------------------S----------------------------------------------
-------------S------------------------------------------------------------------
-------------------------------------------------------------------S------------
---------SS------------------------------------SSS--S-SS---------SS--SS-S-------
--------S--S----S------------------------------------------S--------------------
--------S---------S---------------S-------S----------------SSSSSSSSSSS-----S--S-
-S--S--------SSSS-------------------------------------------------------S-------
-------------------------SSSSSSSS-----------------------------------------------
S-------------------------------------------------------------------------------
-----------------------------------------------------------------S-S------------
---------------------------S---------------------------------------S------------
S--------------S----------------------------------------------------------------
-S------------S-----------------------S-----------------------------------------
-----S--------------------------------------------------------------------------
---------------------------------------------------------SS-S-----S-------------
-------------------S--------S------S--------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
----------------S-----------------------------------------------S---------------
-----------------------------------------------------S--------------------------
-----------------------------------S--------------------------------------------
-------------S---------------S--------------------------------------------------
-----------------------------------------------------------S--------------------
------------------------S--------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
----------------------------------------S---------------------------------------
----------S--------S-----------------------------------------S------------------
-----S-----S--------------------------------------------------------------------
-----------------------SS------------S------------------------------------------
------S-S----------------------S-S----------------------------------------------
------------------------------------------------------S---------------------S---
----------------------------S-----------------------------S----S-S--------------
-S-------S-------------------------S------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
------S-------------------S------S--S-------------------S----S------S-----------
---------------------------------------------------------S----------------------
-S---S----S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
---------------------------------------S---------------S---------S-----------S--
--SS---------S-------------S---------------------------S------------------------
----------------------------------------------------------------------S---------
----------S------SS---------------------------------------------------S---------
----------------------SS------------------------S-------------------------------
---------S-----S------
>forward_375
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGAGAACGGTTTGTTTGGCC-------------------------
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----------------------
>reverse_2116
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-----------------------------------GCGACCAGTACGAGGAGGAA-------------------------
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----------------------
>forward_731
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------CTGCCTTCC
ATTCCTAGCGT---------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>reverse_2891
--------------------------------------------------------------------------------
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----------TGACGGCGTTTGCTTGAGC---------------------------------------------------
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----------------------
>forward_1033
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------CCGCTCATCTACTGCTTCCG-------
--------------------------------------------------------------------------------
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----------------------
>reverse_2972
--------------------------------------------------------------------------------
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-----------TGTCATGCTGGGCTTCTTCC-------------------------------------------------
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----------------------
>forward_1937
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-----------------------------------------------------------------------------GCA
TGCTCGGCTACATCTCC---------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------
>reverse_4571
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----------TTGGGGAGATGGGGTTTGTG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
