>input_sequence_40221
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----------------------------------------------------------------------------TAAT
AAAAACCACACATCATATGCACATTCAACTTCGCAATCAGCACAAATGTCTTGTT-------------------------
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----------------------------------------------TGAATACTCGATTTTGGAAAAGAATGGAGTTCGG
ATTGCCGTATCTAGACCTGGCCATGGGAAGCCCGGCCTGGCCCGAAAAAGTCCGACTCGGCCCGGCCCGACGCTGCCCCC
GAGCCGGGCTCGGGCCTAGATTATGAGCCCGAAGGCCGGGCCGGGCCGGGCCCATCATTTTTTTCATTTCTCTGAAGGTC
GGGCCGGGCCGGCACAGAGCCCGACGGGCTTTTACGTGTTCGGGCCCAGAAAACAGGCCCGATGGTCGGGCCGGGCCGGG
CTCGGGCCTGGTTTTTTTTTCATCGGGCTTGGCTAGGCCCGGCCCGAGGTATGGCCAGGTATAATTCACGCCAACCTCAT
CGATCAAAAAAGAAAGAAATGA----GAA---CATTTCACTCCACTTCACCACGTCGAGTTTCTTTTTCATCTCCCTCCT
ACCTATCTCGCCAAAACCAAA-CAATTACCTCCCCTTCCCTCCTTTTTTTGCCCATTCCCCGCCAAAATGAGAGCCAAGC
ATCTCAAAGGCCTAAACTCTCCC--------CTATCCCCCCGCCCGCGCTCCGTTCG------CTTTCCACCGTCCCGTC
TCGTTTGCTCATCACCGGCCGGCCGCCATGTCGTGCGACGGCGACGAGGAAGAGCGCCCCGTCC----------------
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----TTACCTCGACGCTGCCGCCTCAGGTGAAAGTGAAAATCGAATCCCCCGACGAGGTCGATGTGAAGATGGGGCCATT
CCATCCCGACTCCGACGAGGTGATTATGAAGGTCGAGGCCCACGGTGGGATCGAGGTCAAGAGGGAGCGAACCCATGCCG
ACCACGGCGAGGTGAAGGTTGAAGCCGCCGGCGAGGTCGAGGCAAAGAGGGAGCCAATCGATGCGGACTCCGACAAGGTG
AAGCTTGAATCTCCCGCCGTGGTCGAGGCCAAGATCAAGAGGGAGCCAATCGATGCCGACATCAAGCATGGCCGGGTCAA
GAAGGAGGAGCAACCCGACGAGATCAAGGTCCCGGTAAAGGAGGAACGACGCAAAACTGCGTCGCCGCGCCATGTAA---
AGGAGGAAGAGGAGGATGACTCTAGTGAAGACGAGGTGGAGATCATTGACCCCCCGCCGAAGTCCAAGAAGAGAAACCGC
GGAGACGAGGACGACGTAGTCTTCATCGATCTCACGACGTCCCGCCCGGCGCCTTACCTGAACCCAAAGCCCATCCGGGC
AATGCCGCCGGCGGGGGCCACGCCAG--------TGAGCGATTGGAAGATGGTTGTGGCGCCGCAGCCGGCGGAGCTGGA
CGAGTACCCACCGGACCACCGCGAATGGGTCTTCTTCACAAAGTCCTATGCCACCGGGCTGTCCACTTGTCGCGGGAGGA
AGTGGCTGGACGCCGGCGAGGTCGTCCACTTCGCCTTCCCTTCGCACGAAGGCAGGATCAGGGTGTCGTACAGGCAGGCG
GTGGCGCTGGCAGAGATCGTGCGCTTCTCGACAAACCGAGCTGGAGAGGTTCCCACTCCACTCTGCTTTTGCTTCTAATT
CAC--ATATACATCATATCTGTTCAGGAATAGCATCTGAATATTGATCGATTATTTGA-TGGCAACTAACTGTAGATCGG
GAAGTTGTCTCCGGAGTGGGCGAGGTGCCTTGCCCCGCTGGTGAGTTCTTCCAAGGTTATGATCCAGGGGAAGATGGTGT
TTCCGATGATGGAGCTCAGGCTGATGCAGGAGGTGTTGCTGTATGTCAGGTAACGACTCTGAATGTCTCTGAACATGGTT
GCTAC-TTGTATTCCTGTACTTATTGACGCTAAATTTCCTTTTGTTTCGCAGCTTCTACATCCACCGCTCGTCCTTGTAC
CTGATTTCTCCTAAAAATGAATGTCATCCAAACAATCCCCTCCGCGGCCTCTTCAAGTTGCTTCGGCGATTCGGCGTAGC
TGAAGCCTGA----------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G162800
ACATTAGAAACAATCATCATTGTCTGTCATTGATAAATATGCAGGACAAAAAGAAACGCAATACGAACATAATCATTTAC
ACACTATTCACGAGAAATATCCTTCAAATTGTTTACCTATTGCTTTGTATTAGTTAATTCGCTTTTTTTTGTAGTTGGTC
TCCACGCCGATGACTGCATTTGGCTGTTTGGATACTTCACTTAATTTCCTATTTAATATCCATTTTATATTTCAAATAGT
TCACTTTTAACTTCCGCGATGTAGTTGGTCTCTGCGCCAATTAATTCTTTTATTCCAGTTAGTAAGAGAGATCTTGAACT
AAGAAATAAACCTAGAGGGTATCCTGAGGGTCATCTAATGTCGAATAAAACCTCCTTGGCCACATACTACAACAATGTAC
ACACCGTCATGTACATTGGCCAATACTTTATTTGCGTGTAGCGTAGAGCTTGTACAAAGCCAATGCATACATCGATTGAT
AACCTGCTAAGGAGAAATGATTTACT-ATCAGAAACCTTACTATTTCCTCAAAGCCAAAGCGACACACTCAGACGCTTCC
ACTATACGAAACTTTTTAGGTATGCAGTAGTGGC------CATACATATTGGCAACACATCTTGCTGAAAACACATTGGG
CGCCATTTAGAACACACAGACTG---------------TTGCACCGAAAATGAGGTGCTTAATTATCTCAAGCACAAAAA
CAACATTTTCGTTTGAATAATGTGCAATTTTTAAAGAGTTTATAGTTTTTACCATTCTTTGCGGGAAAAACTTTCG-ATC
TATTCATTTCATACCATGGCACTACAAAGAACACGAGAAGTAACAAAATACACACATACATCCATATTCATATTCATAGA
CCATCTAATAACGACTGCAAGCATTGAATAAATGAAATTCATTTAATG---------GGACGACCTAAGAAAATAGTCGA
AGCAGGCTGACCGAATAGACGTTAGACATTTTTAATGATCTTCAAATTAAGCGCACATCATATTCCC----AAAAATAAT
AAAAACCACACATCATATGCACATTCAACTTCGCAATCAGCACAAATGTCTTGTT-------------------------
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----------------------------------------------TGAATACTCGATTTTGGAAAAGAATGGAGTTCGG
ATTGCCGTATCTAGACCTGGCCATGGGAAGCCCGGCCTGGCCCGAAAAAGTCCGACTCGGCCCGGCCCGACGCTGCCCCC
GAGCCGGGCTCGGGCCTAGATTATGAGCCCGAAGGCCGGGCCGGGCCGGGCCCATCATTTTTTTCATTTCTCTGAAGGTC
GGGCCGGGCCGGCACAGAGCCCGACGGGCTTTTACGTGTTCGGGCCCAGAAAACAGGCCCGATGGTCGGGCCGGGCCGGG
CTCGGGCCTGGTTTTTTTTTCATCGGGCTTGGCTAGGCCCGGCCCGAGGTATGGCCAGGTATAATTCACGCCAACCTCAT
CGATCAAAAAAGAAAGAAATGA----GAA---CATTTCACTCCACTTCACCACGTCGAGTTTCTTTTTCATCTCCCTCCT
ACCTATCTCGCCAAAACCAAA-CAATTACCTCCCCTTCCCTCCTTTTTTTGCCCATTCCCCGCCAAAATGAGAGCCAAGC
ATCTCAAAGGCCTAAACTCTCCC--------CTATCCCCCCGCCCGCGCTCCGTTCG------CTTTCCACCGTCCCGTC
TCGTTTGCTCATCACCGGCCGGCCGCCATGTCGTGCGACGGCGACGAGGAAGAGCGCCCCGTCC----------------
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----TTACCTCGACGCTGCCGCCTCAGGTGAAAGTGAAAATCGAATCCCCCGACGAGGTCGATGTGAAGATGGGGCCATT
CCATCCCGACTCCGACGAGGTGATTATGAAGGTCGAGGCCCACGGTGGGATCGAGGTCAAGAGGGAGCGAACCCATGCCG
ACCACGGCGAGGTGAAGGTTGAAGCCGCCGGCGAGGTCGAGGCAAAGAGGGAGCCAATCGATGCGGACTCCGACAAGGTG
AAGCTTGAATCTCCCGCCGTGGTCGAGGCCAAGATCAAGAGGGAGCCAATCGATGCCGACATCAAGCATGGCCGGGTCAA
GAAGGAGGAGCAACCCGACGAGATCAAGGTCCCGGTAAAGGAGGAACGACGCAAAACTGCGTCGCCGCGCCATGTAA---
AGGAGGAAGAGGAGGATGACTCTAGTGAAGACGAGGTGGAGATCATTGACCCCCCGCCGAAGTCCAAGAAGAGAAACCGC
GGAGACGAGGACGACGTAGTCTTCATCGATCTCACGACGTCCCGCCCGGCGCCTTACCTGAACCCAAAGCCCATCCGGGC
AATGCCGCCGGCGGGGGCCACGCCAG--------TGAGCGATTGGAAGATGGTTGTGGCGCCGCAGCCGGCGGAGCTGGA
CGAGTACCCACCGGACCACCGCGAATGGGTCTTCTTCACAAAGTCCTATGCCACCGGGCTGTCCACTTGTCGCGGGAGGA
AGTGGCTGGACGCCGGCGAGGTCGTCCACTTCGCCTTCCCTTCGCACGAAGGCAGGATCAGGGTGTCGTACAGGCAGGCG
GTGGCGCTGGCAGAGATCGTGCGCTTCTCGACAAACCGAGCTGGAGAGGTTCCCACTCCACTCTGCTTTTGCTTCTAATT
CAC--ATATACATCATATCTGTTCAGGAATAGCATCTGAATATTGATCGATTATTTGA-TGGCAACTAACTGTAGATCGG
GAAGTTGTCTCCGGAGTGGGCGAGGTGCCTTGCCCCGCTGGTGAGTTCTTCCAAGGTTATGATCCAGGGGAAGATGGTGT
TTCCGATGATGGAGCTCAGGCTGATGCAGGAGGTGTTGCTGTATGTCAGGTAACGACTCTGAATGTCTCTGAACATGGTT
GCTAC-TTGTATTCCTGTACTTATTGACGCTAAATTTCCTTTTGTTTCGCAGCTTCTACATCCACCGCTCGTCCTTGTAC
CTGATTTCTCCTAAAAATGAATGTCATCCAAACAATCCCCTCCGCGGCCTCTTCAAGTTGCTTCGGCGATTCGGCGTAGC
TGAAGCCTGAA---------------------------------------------------------------------
----------------------------ACCCGAAGCTCCCGACGAGG----------CGTTTGGGTCAACATGGAGCGA
CATACACTGACTTGCTTACGGTAGCGTCAAGATCTCGTTAGAATGTCAGGATCTCGTTAGTGTACCATTGCGTCGGGTAA
TTTTGGTAATGTAATGGGGGAGCTAGCTTAGCTTGTGCTTGGTACGTCTGCTTCTCTCCTGCGTCCGTTTTGGTGGATGC
CGGGGCTGCGGCCCCGGACGGCTGATGTGCGTTGAGGCAGCCGCCTTGGAAAGCGGTGCTTCACGCGGCTCCATAGGACA
GGGCAGCGGCTCGGCCTTCGCTTGGATGCCAATCTTGGGACACTTGTGGTAGAGTT------------------------
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-----------GTCGGCTCGGTCCATGTGCCCCAACGTGGACAGTCGAACGGTACGTCGGGGAAGCGGCCCCGGATGTGA
TGTGGTGTTCGTGGTTTGTGTGTGATTGTCCTGTGGAGTGTGAGCTGCAAGCATCCAGTTTGTTCGGTGTTGCATATCAA
GAGCGAGCGGTGGCAAGTCGTGGCGGTGGCCTCGGATATTGTGCGACGTTTGTGGTTTGCGTGCGGCTGCCTTGAGCAGT
GTGGGCCGCGGGCATCCGGGTCGTGCGGTGTTGGAGCTCAAGCGCGGGCAGTGGCATGTCGGGACGACGGCCCCCAAGGT
GGTGTTGGTGGCTGCATAGAGCATGGTGATTGGAAGTCGGGGCAGTGGCCTTGACATTTCGGCGGCCTTGAGAGTGTTTG
ACCTCGTCATGTGAGCAACGAGGTTGCTCATGATGTTGGTGTTGGCATTGAGGCCGATGTGGCAAAGATGGTGACGGAGC
TGTCGGAGACGTAGCAATGATTGCGGTAGTCTGATCTTCTCCGATGTTTTTATGGGATTGCCTTGGTTGGTTTGCTAACG
TTGTGAAGTCGAAACTATAGTGGCGGGGCCTAGTGGCATACGATGACAGGCAACACAACAGGTGGTTCGTTCTTTGATCT
TCTGTGGCGCTAGACGTGTTTGGTTCTCCTTC
>chr3A_350
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-----------------------------GTCATCTAATGTCGAATAAGACCTCTTTGGCCACCTACTACAACCGCGTAC
ACGTGCCATA-TACAATGGCCAATGCTTCATTTGCGTGTAGCGTAGAGCTTACACAAAGCCAAT---------GATTGAT
AACCTGCTAAGGAGAAATAGTATTACCATCAGAAACCTTACTGTTTCTTCAAAGCCAAAGCGACAAAGTCAGACGCTCCC
ACTATACGGAACTTTTTAGGTATGCAATTAAACTTGTGGTCATACATATTCGCAACACTTCTCGTTGAAAACACATTGGA
CGCCATTTCGGTGACTGATTACGTAGAACACGCGAACTTTGCAATGAAAATGAGGTGCTTAATTATCTCGGAGCACAAAA
CAACACTTACGTTTGAATAATGTGCAATTTTTAAAGAGTTTACAATTATTATTATCTTTTGGCGGAAAAAACTTCCAATC
TATTCATCCTATATCATGACAATACAAAGAACAC-------------------------------ATCCATATTCATATA
CCACCCAACAAAGACTATAAGTACTAAATATATTAAATGATGTTCAAATCATTTAGTGGACGGCATAAGAAAATAGTCGA
AGCATGCTGACTGAATAGACGTTAGACATTTTGAATGATGTTCAAATTAACCTTGCATCCTATTCGCAAAAAAATAAAAT
AAAAATCACACATCATATATTT----------------------------------------------------------
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--ATATGCACATTCAACTCCGGAAGCACCATCACGAAGGTCTTGTTTGGATACTCGAAGGCCTTGTTCGGATACACTCTC
ATGTTTCATAAAGAGGAAGTATAAA-------------------------------------------------------
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------------------------------------------------------------ATATTTCACGCCAACCTCAT
CGATCAAAAAATCAAAAAAGATAAAGGAAAAACATTTCAATCCACTTCACCATCTCGACTTT-TTTTTCATCTCCCTACT
ACCTGTCCCGCCAAAACCAAAACAATTACCTCCCCTTCCCTGGTTTTTTTGCCCATTCCCCGTCAAAATGAGAGCCAAGC
ATCTCAAAGGCCTAAACTCTCCCCTATCCCCCTATCCCCCCGCCCGCGCCCGCGCCCCGTTCCCTTTCCACCGTCCCGTC
TCGTCTGCTCATCATCGGCCGGCCGCCATGTCGTGCGACGGCGACGAGGAAGAGCGCCCCGTCGGCGGT-----------
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---GTTACCCCGACGCTGCCGCCTCCGGTGAAAGTGAAAAGCGAATCCCCCGACGAGGTCGATTTGAAGATGGGGCCATT
CTATGCCGACTCCGACGAGGTGATTGTGAAGGTCGAGGCCCACGGTGAGGTCGAGGTCAAGAGGGAGCGAATCCATGCCG
ACCATGGCGAGGTGAAGGTTGAAGCCGCCGGCGAGGTCGAGGTAAAGAGGGAGCCAACCGATGCGGACTCCGACAAGGTG
AAGCTTGAATCTCCCGCCGTGGTCGAGGCCAAGATCAAGAGGGAGCCAATCGATGCCGACATCAAGCATGGCTGGGTCAA
GAAGGAGGAGCAACCCGACGAGATCAAGGTCCCGGTCAAGGAGGAACAAGGCAAAACTGCGTCGCCGCGTCATGTAAAGA
AGGAGGAAGAGGAGGAGGACTCTAGTGAAGACGAGGTGGAGATCATTGACCCCCCGCCGAAATCCAAGAAGAGAAACCGC
GGAGATGACGACGATGTAGTCTTCATCGATCTCACGACGTCCCGCCCGGCGCCTTACCTGAACCCAAGGCCCATCCGGGC
AATGCCGCCGCCGGGGGCCACGCCAT--------TGAGCGACTGGAAGATGGTTGTGGCGCCGCAGCCGGCGGAGATGGA
CGAGTACCCACCGGACCACCGCGAATGGGTCTTCTTCACGAAGTCCTATTCCACCGGGCTGTCGACTTGTCGCCGGAGGA
AGTGGCTGGACGCCGGCGAGGTCGTCCACTTCGCCTTCCCTTCGCACGAAAGCAGGATCAGGGTGCCGTACAGGCAGGCG
GTGGCGCTGTCAGAGATCGTGCGCTTCTCGACAAACCGATCTGGAGAGGTTCCCACTTCACTCTGCTTTTGCTTCCAATG
CACATATA--CATCATATGTGTGCAGACATAGCATCTGAATATTGATCGATTATTTGATTGGCAACTAACTGTAGATCGG
GAAGCTGTCTCCCGAGTGGGCGAGGTGCCTTGCCCCGCTGGTGAGTTCTTCCAAGGTTATGATCCAGGGGAAGATGGTGT
TTCCGATGATGGAGCTCAGGCTGATGCAGGAGGTGTTGCTCTATGTCAGGTAACCACTGTGAATATCTCTGAACATGATT
GCTACTTTGTGTTCCTGTACTTATTGACGCTAAATTTCTTTTTGTTCCGCAGCTTCTACATCCACCGCTCGTCTTTGTAC
CTGATTTCTCCTAAAAATGAATGCCATCCAAACAATCCCCTCCGTGGCCTCTTCAAGTTGCTTCGGCGATTCGGTGTAGC
TGAAGCCTGAA---------------------------------------------------------------------
----------------------------GCCCAAAGCTTCTCACGAGTCCGAGTTTGGCCGTTGGGTCAACATGGAGTGA
CATACTAAT--TTGCTCATGGTAGTGTCAGGATCTCGTTAGGAGTAGAG--------TAGTGGACCATTGCGTTGGGTAA
TTTTGGT-------------------------------------------------------------------------
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>chr3D_775
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-----------------------------------------------------------------------------ATC
TATTCATTCCATATCATGACGGTACAAAGAACAGGAGAAGTAACAAAAAATAACA-------CAGATCCATATTCATAGA
CCACTTACTGACGACTGCAAGCATTGAATAAATGAAATTCATTTAGGG---------GGACAACCTAAGAAAATAGTCGA
AGCAGGCTGACTGAATAGACGTTAGACATTTTGTATGATCTTCAAATTAACCTCACATCATATTCCC----AAAAACAAT
AAAAACCACACATCATATGCACATTCAACTTCGCAAGCAGCACAAAGGTCTTGTTCGAATACTCGATTTTGGAAAAGAAT
GAGTTTCGGATTGCCGTATATTTACTTCAACCTCATCGATCGAAAAAGAAAGAAATGAGAAGAACATTTCACTCCCTTCA
CCACCTCAACTTTTTTCCATCTCCCTCCTGCCTGTCCCGCCAAAACCAAAACAATTACCTCCCCTTCCCTCGTTTTTTTG
CCCATTCCCCGCCAAAATGAGAGCCAAGCATCTCAAAGGCCTGAACCCTCCCCTATCCCCTTGCCTCCTTCCCAATCAAC
ACCCCCCCTATCCCCTTGCCTCCTTCCCAATCAATATAAAGGGGGTGAGTCTTGAGGCTTGATCCAACACTTGTCCTTAG
TGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCAGTTCCATCTCCCATGTTGTATCTAAATGAACTTTTCCTGAAATGAGCTTTGAGCAGGCA
TTAGTTTAATCATATATATGTTGCATGCATTCTCAAAACCACACAGGGGATTAGATGCAATTTCAGTCTACTATACGTGT
TGCCCATGGCTTGCTTAACTTCCCGGCTGCAGTTGGTCTTTACGCCAATGAGTAATGGATCTCCTTTCTATCGACCCAGC
TGTTTGGTTGCCCTAGCCGACCAAAGAAGGACATTAGAAACAATCATCATCGTCTGTCATTGATAAATATGCATGATAAA
AACAAACGCAATACAATCTATTCATTCCATATCATGACGGTACAAAGAACACGAGAAGTAACAAAAAATGACACAGATCC
ATATTCATAGACCACTGTCAAGCATTGAATAAATGAAATTCATTTAGGGGGACAACCTAAGAAAATAGTCGAAGCAGGCT
GACTGAATAGACGTTAGACATTTTGTATGATCTTCAAATTAACCTCACATCATATTCCCAAAAACAATAAAAACCACACA
TCATATGCACATTCAACTTCACAAGCAG---CACAAAGGTCTTGTTCGAATACTCGATTTTGGAAAAGAATGAGTTTCGG
ATTGCCGTATA---------------------------------------------------------------------
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----------------------------------------------------------------TTTACTTCAACCTCAT
CGATCGAAAAAGAAAGAAATGA----GAAGAACATTTCATTCCCCTTCACCACCTCAACTTT-TTTC-CATCTCCCTCCT
GCCTGTCCCGCCAAAACCAAAACAATTACCTCCCCTTCCCTCGTTTTTTTGCCCATTCCCCGCCAAAATGAGAGCCAAGC
ATCTCAAAGGCCGGAACCCTCCCCTATC---------------------------------CCCTTGCCTCCTTCCCAAT
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGTTACCCCGACGCTGCCGCCTTTCC----------------------------------------------------
--ATGCCGACTCCGACGAGGTGATTGTGAAGGTCGAGGCCCACGGTGAGGTCGAGGTCAAGAGGGAGCGAATCCATGCCG
ACCACGGCGAGGTGAAGGTTGAAGCCGCCGGCGAGGTCGAGGTAAAGAGGGAGCCAATCGATGCGGACTCCGACAAGGTG
AAGCTTGAATCTCCCTCCGTGGTCGAGGCCAAGATCAAGAGGGAGCCCATCGATGCCGACATCAAGCATGGCCGGGTCAA
GAAGGAGGAGCAACCCGACGAGATCAAGGTCCCGGTAAAGGAGGAACAACGCAAAACTGCGTCGCCGCGCCATGTAAAGG
AGGAGGAAGAGGACGACGACTCTAGTGACGACGAGGTGGAGATCATTGATCCCCCGCCGAAGTCCAAGAAGAGAAACCGC
GAGGATGACGACGACGTGGTCTTCATCGATCTCACGACGTCCCGCCCGGCGCCTTACCTGAACCCAAAGCCCCTCCGGGG
AATGCCGCCGCCGGGCGCCACGCCAGTGAGGCAGTGAGCGATTGGAAGATGGTTGTGGCGCCGCAGCCGGCGGAGCTCGA
CGAGTACCCACCGGACCACCGCGAATGGGTCTTCTTCACAAAGTCCTACGCCACCGGGCTGTCGACTTGTCGCGGGAGGA
AGTGGCTGGACGCCGGCGAGGTCGTCCACTTCGCCTTCCCTTCGCACGAAGGCAGGATCAGGGTGCCGTACAGGCAGGCG
GTGGCGTTGGCAGAGATCGTGCGCTTCTCGACAAACCGATCTGGAGAGGTTCCCACTTCACTCTGCTTTTGCTTCTAATG
CACATATATACATCATATCTGTTCAGGAATAGTATCTGAATATTGATCGATTATTTGA-TGGCAACTAACTGTAGATCGG
GAAGTTGTCTCCCGAGTGGGCGAGGTGCCTTGCCCCGCTGGTGAGTTCTTCCAAGGTTATGATCCAGGGGAAGATGGTGT
TTCCGATGATGGAGCTCAGGCTGATGCAGGAGGTGTTGCTGTATGTCAGGTAACGGCTCTGAATATCTCTGAACATGGTT
GCTACTTGTATTTCCTGTACTTATTGACGCTAAATTTTTGTTTGTTTCGCAGCTTCTACATCCACCGCTCGTCCTTGTAC
CTGATTTCTCCTAAAAATGAATGTCATCCAAACAATCCCCTCCGCGGCCTCTTCAAGTTGCTTCGGCGATTCGGTGTAGC
TGAAGCCTGAAGCCCGACGTACGTCCCACTGACGTTGCCCCACTGACGTGTGGGCCCGGGGCCACATGCCAGTGGACGCC
ACGGCACGTCAGGCGATCCGCTTCCGAAGCGCGAAGCTCCTGACGAGGACAAGCCTGGCGTTTGGGTCAACATGGAGCGA
CATACACTGACTTGCTTATGGTAGCGTCAGGATCTCGTTAGAATGTCAGGATCTCGTTAGTGTACCATTGCGTCGGGTAA
TTGTGGTAATGTAATGGGGGAGCTAGCTTAGCTTGTGCTTGGTACGTCTGCTTCTCCCCTGCGTCCGGTTTGGTGGATGC
CGGGGCTGCGGCCCCGGACGGCTGATGTGCGTTGAGGCGGCCGCCTTGGAAAGCGATGCTTCACGCGGCTCCATAGGACG
GGGCAGCGGCTCGGCCTTCGCTTGGATGCCAATCTTGGGACACTTGTGGTAGGGTTGTCGGCTCGGTCCATTTTTTTTTC
GAACGAAGACGCTAGGAGCGTCTGACTTTAAATTAATAAAGTCAACAACATAGGCAGCGTATCAACCAAGTCACCTTACA
TAACACCGAAGTACTCAAGCCATACAAACGCTGAGAGTTTAGATTTAACGGCCAAAAGAGCGCGAGCCGAGAGTTACATG
GCGCGAAGGCCAGATCATTGAGCATGCAGGCTCACACAAGGGCCATTTCAAGTCAAGAAGTGGCGGCTGGCTCCCTAGCC
AAGACTTACACCTGGCGTAGACGGTCTTGAGCTTGCTTCATCTTCTCAGCATCCTTGCGCTTCGCCAATGGACTCCACTA
CTACAAGAATAAGTTGCATTTGTAGATGATATTAGCCGGGTGCGTCGGGAAGATCCCCTCGATAGCTATTTTATTCCTAG
TTAACCACAGCGCCCAGAATAGTGCCCCAACACAGCTCCACAACACACGATTGTTGCTCCCCTGGACCGAGTCAAGGATA
GTCGCAAGATCGCTGGATGACCTCGGGTCCCAGGAAACGCCAGCCGCGGTCCGGACCGCGCTCCAGGCAAACCTGGCCAG
CGGGCACCGAAAGAATACATGGTCCGCGTCCTCGGCCACGTTACAGATCGCACACATGCCAGTCGACGGCCCTTGCCTTT
TCGCCACGTTTTCAGAGGTGGGCAATCTGTTCCTAAACAGCTGCCAGCAAAACACCTTGATTTTGAGCGGGAGGCGCGCT
TTCCATAGCCCCTTCGCCATTGGCAGGGTCGGCCCCTGGCAGAGTTTACGGTATAGGGGTTTGACCGAAAACTTGCCGGA
CGCGGTGAGAGCCCAAGTCACCGAGTCCGCGGTTGTGGACAACACAACTGGGCTTATTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTAACTCCTGGAATTCCGACCAGAGAGGTTGTGAGCCGACCCAAAAATCGAGCCAGAAC
CTGGCCGATATGCCGTCTCCAATGGTAAACTTAGCCCCCATGGCAAATGCCGGGCGGATGGCTTGGAGGTCGTTCCAGAA
AGGTGAGCCCCTAGCTGCACCATCGAAGAAATTCCAGTTCGGGAAATACTTGGCACGCAACAGGCCAACCCACAGGCCGG
TCGCCCCTTGGGATATCTTCCAAATCCATTTGCACATTAGTGCAATGTTGAGGATTCTAGTGTTGGTGATCCCGAGGCCC
CCCAAGTCCTTGGGGCGACAGACCGCGACCCATTTTACCATGTGGTATTTGCGCTTCAGGCCCGAACCTTCCCAGAAGAA
ACGCGATCGGGGCGTGTCCATTTTGGCGTGAACACCCTCTGCCAGGAGGAAGAGGCCCATCGCAAACTAGGGCAGGGAGG
ATAGGCTCGAGTTCGTAAGCACTAGCCTGGCTGCGGAGGAGAGAAATTTGCCCCTCCACGGACAAACCCGTCCCCCCACC
TTGGTCCATAGCGGTGCCCAACCATCTATCATGATGCGTTTGGCATCTAATGGCAAACCAAGGTATGTAAAAGGAAGCTT
GCCAACTTTACAGTTGAGCAAGTCCGCGATGCGCGTGCCTTCTTCCGCTTCCAAGCCCATGGGCAGAATTTCACACTTGT
GAAAGTTAATTTTGAGCCCTGGCATGAGCTCGAAGCTAAGAAGAAGGGCTTTGACCGTGGCCAGCCTGTGGAGATCCGGC
TGGAACATCAATAACGTGTCGTCCGCGTACTGCAAGTGGGAGATCCCCCCTGGGATGAGGTGTCCCATTACATCTTTGAT
GTGACCAGCCTCGGTGGCTCTCCGCAGCATTGCAGCCAACGCGTCGACTACGAAGTTGAACAAGATCGGGGACATGGGGT
CACCCTGACGGAGTCCATGCTTGTTCCGAAAGAAGTGCCCTACTTCTCCGTTGACCGAGATCGCAGTTTGGCCCCCCGAG
ACCAGCTGCATTACTCGGTGAACCCAAACCGCCGAGAAACCCCGGCTGATGAGAACTTGGCGCAAAAAATCCCAGTTTAC
CCAGTCATACGCTTTTTCGAAATCTAGTTTGAGAAGGATGGCCGGTTCGTTTGTGCGTTTAAGTTCATGTAGGGTTTCTT
GAAGGGCCAGCGGGCCCTCCAGGATGTGGCGTCCATGAATGAAGGCCGATTGCGATCGGCTGATGGTACGATGAGCGATC
GGGACGAGGCGCATGGAGCATGCTTTAGCACAGATCTTGAATGGAACGTTGATTAGCGCAATGGGTCTGTACTGGCGGAT
GTTGTCCGCCCCGGCCACTTTGGGGATAAGCGAAAGCACGCCGTAGTTAAGCCTAGCTATGTCAACCGAGCCACGCATAA
AACCGTTGCACACCTCAAATATGGACTCGCGAAGCAAAGGCCGGAAATGCTTGAACATCGCCACCGGCCACCCGTCCGGG
CCAGGCGCCGTGTCAGGTTTCATGCTAAGGAGCGCGTCGTCGATCTCCTTGGGGAGAAACGCGAGCCCCAACTCGGCGTT
TTCACTGGTACGTCGGCTCGGTCCATGCGCCCCAACGCGGACGGTCGAACGGTACGTCGAGGAAGCGGCCCCGGATGTGA
TGTGGCGTTCGTGGTCTGTGTGTGGCTGTCCTGTGGAGTGTGAGCTGCAGGCATCCAGTTTGTTCGGCGTTGCATATCAA
GAGCGAGCGGTGGCATGTCGTGGCGGTGGCCTCGTATATGGTGCGACGTTCGTGGTTTGCGTGCGGCTGCCCTGAGCAGC
GTGGGCTGCGGGCATT-GGGTTGTGTGGTGTTGGAGCTCAAGCGCGGGTGGTGGCCTGTCGGGACGGCGGCCCCCAAGGT
GGTGTTGGTGGCCGCGCAGGGCATGGTGATTGGAAGTCGGAGCAGTGGCCTTGAGATTTCGGCGGCCTTGAGAGCGCTTG
ACCTCGTCGTGTGAGCAATGAGGTTGCTCACGATGTCGGTGTTGGCGTCAAGGCCTATGTGGCAAAGATGGTGGTGGAGC
TGTCGGAGACATAGCAATGATTGCGGTAGTCGGATCTTCTCCGATGTTTTTATGGGATTGCCTCGGCTGGTTT-CTACTG
CTGTGAAGTCGAAACTGCAGTGGCGGGGCCCAGTGGCGTACGATGACAGGCAACACAACAGGTGGTTCGTTCAATGATCT
TCTACGGCGCTAGACGTGTTTGGTTCTCCTTC
>chr3D_3124
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----------------------------------GTGCTTGGTACGTCTGGTTCTCTCCTGCGTCCGGTTTGGTGGATGT
CGGGGCTGCGGCCCCGGACGGCTGATGTGCGTTGAGGCGGCCGCCTTGGAAAGCGATGCTTCACGTGGCTCCATAGGACG
GGGCAGCGGCTCGGCCTTCGCTTGGGTGCCAATGTTGGGACACTTGTGGTAGGGTTGTCG--------------------
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---------------GCTCGGTCCATGCGCCCCAACGCGGACGGTCGAACGGTACATCGGGGAAGCGGCCCCGGATGTGA
TGTCGTGTTCGTGGT-TGTGTGTGCTTGTCCCGTGGAGTGTGAGCTGCAGGCATCCAGTTTGTTCGGCGCTGCATATCAA
GAGCGAGCGGTGGCATGTCGTGGCGGTGGCCTCGGATATGGTGAGGCATTCGTGGTTTGCTTGCGGCTGCCCTGAGCACC
CTGGGTTGCGGGCATCCGTGTCGTGCGGTGTTGCAGCTCAAGCGCGGGCGGTGCCATGTCAGGAGGGCGGCCCCCAAGGT
GGTGTTGGTGGTCGCGCAGGGCATGGTGATTGGAAGTCAGGGCAGTGGCCTTGAGATTTCGGCAGCCTTGAGAGCGTTTG
ACCTCGTCGTGTGACCAACGAGGTTGCTCACGATGTCGGTGTTGGTGTCAAGGCCTATGTGGCAAAGATGGTGATGGAGC
TGTCGGAGACGTAGCAATGATTGCGGTACTCGGATCTTCTTCGATGTTTTTATGGGATTGCCTCGACTGGTTTGCTACTG
CTGTGAAGTCAAAACTGAAGTGGCGGGGCCCAGTGGCATACGATGACAGGCAACACAACGGGTGGTTCCTTCAGTGATCT
TCTACGGTGCTAGACGTGTTTGGTTCTCCTTC
>chr3B_3253
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---CAGCGGCTCGGTCTTCACTTGGATGGCAATCTTGGGACACTTGTGGTAGGGTTGTCG--------------------
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---------------GCTCGGTCCATGCGCCCCAACACGGATGGACGAATGGTACATCGGGGAAGCGGCCCCAGATGTGA
TGTGGCGTTCCTGGTCTGTGTGTGGTTGTCCTGTGGAGTGTGATCTGCAGGCATCCAGTTTGTTCGGTGTTGCATATCAA
GAGCGAGCGGTGGCATGTCGTGGCGGTGGCCTCGGATATGGTGCTGTGTTTGTGGTTTGCGTGCGGCTGCTCTGAGCAGC
GTGGGCTGCGGGCATTCGGGACATGCGATGTTGGAGCTCAAGTGCGGGCGGTGGCATGTCAGGACGGCGGCCCCCAAGGT
GGTGTTGGTAGCCATGCAGGGCAGGGTGATTGGAAGTCGGGGCAATGGCCTTGAGATTTTGGCGGCCTTGAGAGTGTTTG
ACCTCGTCATGTGAGCAACGAGGTTGCTCACGATGTTGGTGTTGGCGTCAAGGCCTATGTGGCAAAGATGGCGATGTAGC
TTTCAGAGACGTAGCAATGATTGCGGTAGTCGTATCTTCTCTGATGTTTTTATTGGATTGCCTTGGCTGGTTTGCTACTG
GTGTGAAGTTGAAACTGCAGTGGCGGGGCCCAGTGGCATACGATGACATGCAACACAACAGGTGGTTCATTCAGTGATCT
TCTGCGGCGCTAGACGTGTTTGGTTCTCCTTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-----S--------S---------SSS----
--SSSSSSSSS----S--------S---S----------------------SS-----------SSSSSSSSS-------
------------------SS-S-SSS----------------S----S-----------------S-S---------S--
--------S-----------------S-SSSSSS----------------S-------S---S-S--------------S
--------S-SSS--SS-SSSS---------------------SS------------------------SSSSSSS----
-----S--S---------------------------------S-S--S---SS--SS----SS-------SS---S----
--------S----S----S--S--------------------------S-S-SSSSSSSSSS--S--S------------
---S------------------------------------------S---------------------------------
-----------S--------------------S-----------------S-S-----------------------S---
------------------------------------S---------S---------------------------------
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------------------------------------------------------------------------SSS-----
----------SSSSSSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------------
---------------------------------------S-------------S----S---S-----------------
----S--S----------------------------------S-------------------------------------
-------------------------------------------------S-SSSS-S-----------------------
----S---------S------------------------------------------------S----------------
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---------S---------------S--------------S----------------------S----------------
-S--S--------------------S---------------------S-S---------------------S--------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
----------------S---------------------------------------------------------------
-----S--S-----------------------------------------------------------------------
----------S---------------------------------------------------------------------
---------------------------------------------------------------S----------------
-----------------------------------------------------------------S--------------
---------------------------------------S-----------------S---------------------S
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
----------------------------------------------------------------S---------------
----------S---------------------------S-----------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
----------------------------S-----------S---------------------------------------
------------------S----------S--------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------S----------------S-----------------------S
----------------------------------------------------S---------------------------
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---------------------------S---------S----S-------------------------------------
---------------S--------S------------------------S------------------------------
---------------S-----------------------S-------------------------------S-------S
------S------------------------------------------S----------------S-------------
------------S--SS--S----------------------------------S-------------------------
------------------------------S---------------S-SS-----S------------------S-----
-------------------------------S----------------------------------S----------SS-
S---------------SS------------S-----------------------------------------SS------
----S---------------------------
>forward_168
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--------------------------------------------------------------------TTGTAGTTGGTC
TCCACGCC------------------------------------------------------------------------
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>reverse_3184
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---------------------------------------------------------------GTGAAGATGGGGCCATT
CCA-----------------------------------------------------------------------------
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>forward_546
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----------------------------------------------CCTCAAAGCCAAAGCGACAC--------------
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>reverse_3248
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-----------------------------------------------GGATCGAGGTCAAGAGGGAG-------------
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>forward_3202
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--------------------------------------------------------------TGTGAAGATGGGGCCATT
CC------------------------------------------------------------------------------
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>reverse_7800
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---------------------------------------TGTGCGACGTTTGTGGTTTG---------------------
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--------------------------------
