>input_sequence_40160
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-----------------------------------------------ATGAGCAGCCGAAGCCCGCCGCCGAGGGACCGG
AGGATGCGTACTGAACGCACCTCGTACCGTGACGCGCCATACCGGAGAGACAGGGACGGCCGCCGTGGTCCAAGCAGGTT
TGAGCCGCCTTATTTAATGAAACACGATAAACATTTGCCATTGTATATCAAGCGTTGTTGCTTTCTCTCTTAACTGTATA
TGTTGGCCATAATGCTACCTGAAGAGGCCTTACACTAGCCCTGGTTTCTATGATGGTAGCAGGGGGCTGTGTATCCTTTA
ATTATTTCCTTTACTTGTACTGCAGGTCTGCTAGTGATTTGTGCAACAACTGTAAGCGTCCAGGGCATTTTGCTAGAGAT
TGTCCAAATGTGTCTGTCTGCCATGCCTGTGGCCTTCCAGGGTAAGGACTATTACTTGTTTGGTCATGCGGATCTGAGAT
TTTGCAGTCTTGTATGTTAGCTCATGTTAAGATCTTCCATTGTGTAGCAAC-TTTTTATTGTATTCTTGACTTCTTATTC
ATAATGATTCCAATGCTTTCAATATTCTCAATAGCCCTGCTATTTTCTAGTGCATATTTTACACCAGATTACCATAATTG
TTGGTTGCAGTTATTTGCTTTTGTATGCTGTATTGTATCTAGAACTCTGTCCATCATCATGTAACTATTGCATTTCTTTT
CCTGTGGAGTTTTCATGCTTTTAATATTCTCGGTAGACCTAGTTGTTCTCCAGTGCATATTTTACATTGGGTTACCATGA
TTAATGGTTGCAATTATTTGTTCGTGCTTAACCATTTTGAGGCACCTTATGTTCTTGTCATGTTTAATGAGAAATCTAGT
ATCAGCGTGAATTGATAGTT-ATTTGAGATCCCCCCACCCCCCTCAAAACAATACATGTGTCACCTGTCTTAAGTCATTT
GTAATCATCTTATGTTAGTACCTTTTTAGT------GCAAGTGCCTTGTACAAGGATTTGGTTCATTTTTCATAATTTAT
TCTGGATGCAAATATATTATCAGAAAGCGGTGGTTAACAGATAATGATACTTGAAGCTTGAACCGTACGTAGATCATAAC
CATCATAAAAATGACCAGTACATGATAAATTGTGAAGCTTAAGTTGTACTCCCTCCATCCTAAAATAAGTGTCTCAACTC
TAGTACAACTTTGTACTAAAGTTAGTATAAAGTTAAGACGCTTATTTTGAGACGGAGGGAGTACATAGGTCATACGTTAT
TCCTCCATGTGACC--AGGAAAGCCTTGCATAGTACATCCTCTACCTTCCTTCTGAGGCAAAAACAGTGCCCACTCAATC
TTTAAATTTCTGCAGGCACATTGCAGCTGAGTGTTCTTCCAAAGATCTCTGCTGGAACTGCAAAGAGCCTGGGCACATGG
CTAATGCCTGCCCGAATGAAGGGATATGCCGCAACTGTGGCAAATCAGGTCACATTGCAAAAGACTGCACTGCTCCGCCA
ATGCTGCCTGGAGAAGTGAAGCTCTGCAACAACTGCTACAAACCAGGGCACATTGCCGTGGAGTGCACCAATGAGAAGGC
CTGCAACAACTGTAGGAAGAGTGGCCATCTTGCCCGTAACTGCACCAATGAGCCTGTTTGCAATCTCTGCCATGTTGCAG
GGCATTTGGCCCGTCAATGCCCCAAATCCGACGAGATCAACGAGAGGGGTGGGCCTCCTCCCTTCCGTGGCAGCGATGCT
CTGTTCCGTGGCGGC---------------------GATGCTCTGTTCCGTGGTGGCGATGCTCCCTTCCGCGGTGGTGA
TGCTCCCTTCCGTGCTGGCGGTGGTGCTCTCTTCCATGGTGGCTACAGTGACGTGGTCTGCCGGGCCTGCAACCAGGTTG
GCCATATGAGCCGTGACTGCATGGGTGGTGCTTTCATGATCTGCAACAACTGCGGTGGCCGTGGTCATATGGCTTACGAG
TGTCCATCTGGGAGGCTCCTGGACCGGTTCCCTCCACGCCGATACTGA--------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>chr1A_1_TraesCS1A01G205800
GGCCACAGCCT-TTTTAAAACTTTGCGTTACGACTTCTAGTCTTCTACGGGTTGCTCGCTTTCTGTGAGCCGTCCACTGG
AGATCGGACGGCTAGGGTGATCACGTGTTCCCTCTTATAGCCTGGATCTGCCTGCGTCGTCTTCCCGACCGACCGACCGG
GTGCGTTCGGTGTCCGGACCTACCCAATCCCAATCCAACATCGCGAGTCGGGGTCGCTGTCCCTCACCGTCGCCGCCGCG
GCTTCCACCCGCTGACCTCCGCCGGAGCTCGCCGGACTCGTAGGGTTTCTTCAGTCGTCCTCTTCCCTGCTGGAGATCCG
CACCCTAGGTAAGCCTCGGTTTCGTCAACTTCACCTGCACCTAATTTGCGCCGTGTAGGCAGAAATCGGCTA-TCTTCCT
CGAGATTTCGTGCCTTTAGCTGTATATACGCGTATCGGCGTATGTTGCCCGAGTAGATGCGAACCCGCTTGCTGTTGCCC
GATGTGGTCGCCGCCCCTAGGGTTTCTTTCGCTGAAGCTTTGGGCTTTGTACGATAGGACTTATGAGCATGGCCCGGTGG
AACTGTTGAGGCCCTCATATGTTGATAATCCATCGTGC-TGAGGTGGTTGTAGGACGGTTCATGGCTGTAGCCTGTAGGG
TCAGGTGGTAAAACAAAATTTATTGTTAGGGCGCGAATTGTGTGGTGG---TGTTGTCTGGGAAGGAAACCCT-TGCGTC
GCGAGAAATCAAGATGCGGGGGCGGTGCTTGAATGTCGTGAATGGTCATGGCGGAAAGTAGGGGAAGTTCATGCGGCCTA
CGGTTGGAATTCAGCGTGCTTAGTAGAGGATGATGATGGTTGTTGGCCTCATGGGGTTGGATTTCAGCCTGTGGTTTTGT
TGTCGACAGGAAGGAAGGAAGGGAGGAAGGAAGCAGGGTGAGTTGTGGTGATTTTGTGGTTTGGACGTGTGGTGTTCACA
GTTTGGTGGGAGCTTGGAGGCAGGAGATTTAGAAGGAAGGGTTGACGATGAGCAGCCGAAGCCCGCCGCCGAGGGACCGG
AGGATGCGTACTGAACGCACCTCGTACCGTGACGCGCCATACCGGAGAGACAGGGACGGCCGCCGTGGTCCAAGCAGGTT
TGAGCCGCCTTATTTAATGAAACACGATAAACATTTGCCATTGTATATCAAGCGTTGTTGCTTTCTCTCTTAACTGTATA
TGTTGGCCATAATGCTACCTGAAGAGGCCTTACACTAGCCCTGGTTTCTATGATGGTAGCAGGGGGCTGTGTATCCTTTA
ATTATTTCCTTTACTTGTACTGCAGGTCTGCTAGTGATTTGTGCAACAACTGTAAGCGTCCAGGGCATTTTGCTAGAGAT
TGTCCAAATGTGTCTGTCTGCCATGCCTGTGGCCTTCCAGGGTAAGGACTATTACTTGTTTGGTCATGCGGATCTGAGAT
TTTGCAGTCTTGTATGTTAGCTCATGTTAAGATCTTCCATTGTGTAGCAAC-TTTTTATTGTATTCTTGACTTCTTATTC
ATAATGATTCCAATGCTTTCAATATTCTCAATAGCCCTGCTATTTTCTAGTGCATATTTTACACCAGATTACCATAATTG
TTGGTTGCAGTTATTTGCTTTTGTATGCTGTATTGTATCTAGAACTCTGTCCATCATCATGTAACTATTGCATTTCTTTT
CCTGTGGAGTTTTCATGCTTTTAATATTCTCGGTAGACCTAGTTGTTCTCCAGTGCATATTTTACATTGGGTTACCATGA
TTAATGGTTGCAATTATTTGTTCGTGCTTAACCATTTTGAGGCACCTTATGTTCTTGTCATGTTTAATGAGAAATCTAGT
ATCAGCGTGAATTGATAGTT-ATTTGAGATCCCCCCACCCCCCTCAAAACAATACATGTGTCACCTGTCTTAAGTCATTT
GTAATCATCTTATGTTAGTACCTTTTTAGT------GCAAGTGCCTTGTACAAGGATTTGGTTCATTTTTCATAATTTAT
TCTGGATGCAAATATATTATCAGAAAGCGGTGGTTAACAGATAATGATACTTGAAGCTTGAACCGTACGTAGATCATAAC
CATCATAAAAATGACCAGTACATGATAAATTGTGAAGCTTAAGTTGTACTCCCTCCATCCTAAAATAAGTGTCTCAACTC
TAGTACAACTTTGTACTAAAGTTAGTATAAAGTTAAGACGCTTATTTTGAGACGGAGGGAGTACATAGGTCATACGTTAT
TCCTCCATGTGACC--AGGAAAGCCTTGCATAGTACATCCTCTACCTTCCTTCTGAGGCAAAAACAGTGCCCACTCAATC
TTTAAATTTCTGCAGGCACATTGCAGCTGAGTGTTCTTCCAAAGATCTCTGCTGGAACTGCAAAGAGCCTGGGCACATGG
CTAATGCCTGCCCGAATGAAGGGATATGCCGCAACTGTGGCAAATCAGGTCACATTGCAAAAGACTGCACTGCTCCGCCA
ATGCTGCCTGGAGAAGTGAAGCTCTGCAACAACTGCTACAAACCAGGGCACATTGCCGTGGAGTGCACCAATGAGAAGGC
CTGCAACAACTGTAGGAAGAGTGGCCATCTTGCCCGTAACTGCACCAATGAGCCTGTTTGCAATCTCTGCCATGTTGCAG
GGCATTTGGCCCGTCAATGCCCCAAATCCGACGAGATCAACGAGAGGGGTGGGCCTCCTCCCTTCCGTGGCAGCGATGCT
CTGTTCCGTGGCGGC---------------------GATGCTCTGTTCCGTGGTGGCGATGCTCCCTTCCGCGGTGGTGA
TGCTCCCTTCCGTGCTGGCGGTGGTGCTCTCTTCCATGGTGGCTACAGTGACGTGGTCTGCCGGGCCTGCAACCAGGTTG
GCCATATGAGCCGTGACTGCATGGGTGGTGCTTTCATGATCTGCAACAACTGCGGTGGCCGTGGTCATATGGCTTACGAG
TGTCCATCTGGGAGGCTCCTGGACCGGTTCCCTCCACGCCGATACTGAACGACTACCATGAGCTCTTTCAG--------T
CCTTTTGATCGATCGTGTTGTGAATCATCATTTTGACGTGCGTCGTGTTTTTGAATGTCTAAGGGATTAAGTATTCCAGT
TGTTTCTGCAACTTGTTAGTCTTGTGGTTATTGAATGGCTTCTAGGGTATTTTCAGATCAGACTCCCTTGCTCCCTGTGT
TTTGAATAATAATTATTTTCATGGATTAGTGAATACCAAGTGTTTATCTGTAAATTGTGTTTTCAGCTATT---TTAACT
GGATCATTCTGTTGAGAGTGGATCTATATGAATGGAGCGCCTTATATTAATGCTTACAAGTTTCATGGTCTAAACTGTGT
TTTCAG---TATTATTTCACATTTTCTTGAGGCAATTGT--CAAATTTGGTAGTATGTCCTATTTTGCTATCCTCCCAAA
GTTTAAAACGTTGCAATTGATACTGTACAATCTTATAACTGGAGCTTGCGTGTGAACTGAAATGGATGTACATTTTTTTC
C-TC--ATAGACAGATGATAAATATTCAGTATGACCATCAAGTGCACAAGCTTAATCATACTTTTCTTATTGAAAGCCAA
TCCACGGACATATAGC-AGATAGCAAGCT-GCTTAAAGGTTATCTGGTAAATATTATTGGTCAGCATAACAAGTTCAGGG
ACGTTCACCACACTTGCAAGAAACACAAAAAATCACATAACAAGAACTACACATGTCCAGCTCAACACAACTATTTTCAC
AATGCCATTACTGAACAAGATCATCAGGGAGGCGCTGAGGATGCACTCTATAAGACCATCTAATCCAACTTTGCATAAGC
GAATCCGTCAGCACCTTCTTTCTTGCCGTCGCTTGGTGCCAGATCCTTCAACTATTTCATGCA---GGGACAAGAAAAGT
CAATAAAATTAGCTCCATATATATAGTCACCTTAACAGCCAATTCACAGATGGCA--------------AAAAAAAAATG
CACGATACTATTTCTTAGGTAAAGTATATGTAACGACAGAAGAAGA
>chr1D_2
-GCCACAGCCT-TTTTAAAACTTTGCGTTACGACTTCTAGTCTTCTACGGGTTGCTCGCTTTCTGTGAGCCGTCCACTGG
AGATCGGACGGCTAGGAAAATCACGTGCTCCCTCTTATAGCCTGGATCTGC----GTCGTCTTCCCGACCGACCGACCGG
GTGCGTTCGGTGTCCGGACCAACCCAATCCCAATCCAACATAGCGAGTCGGGGTCGCTGCCCCTCACCGTCGCCGCCGCG
GCTTCCCCCCGCTGACCTCCGCCGGAGCTCGCCGGACTCGTAGGGTTTCTTCAGTTGTCCTCTTCCCTGCTGGAGATCCG
CACCCTAGGTAAGCCTCGGTTTCGTCGACTTCACCTGCACCTAATTTGCGTCGTGTAGGCAGAAATCGGCT-GTCTTCCT
CGAGATTTCGTGCCTTTAGCTGTATAC----------GCGTATGTTGCCCGAGTAGATGCGAACCCGCTTGCTGTTGCCC
GATGTGGTCGCCGCCCCTAGGGTTTCTTCCCCTGAAGC-TTGGGCTTTGTACGATAGGACTTAGGAGCATGGCCCGGTGG
AGCTGTTGAGGCGCTCGTATGTTGATAATCCAGCGTGC-TGAGGTGGTTGTAGGACGGTTCATGGCTGTAG-------GA
TCAGGTGGTAAAACAAAATTTATTGTTAGGGCGCGAATTG---GGTGG---TATTGTCTGGGAAGGAAGCCCT-TGCGTC
GCGAGAAATCAAGATGCGGGGGCGGTGCTTGCATGTCGTGAATGGTCATGGCGGGAAGTAGGGGAAGTTCGTGCGGCCTA
CGGTTGGAATTCAGCGTGCTTAGTAGAGGATGATGATGGTTGTTGGCCTCATGGGGTTGGATTTCAGCCTGTGGTTTTGT
TGTCGACAGGAAGGAAGGAAGGGAGGAAGGAAGCAGGGTGAGTTGTGGTGATTTTGTGGTTTGGACGTGTGGTGTTCACA
GTTTGGTGGGAGCTTGGAGGCAGGAGATTTAGAAGGAAGGGTTGACGATGAGCAGCCGAAGCCCGCCGCCGAGGGACCGG
AGGATGCGTACTGAACGCACCTCGTACCGTGACGCGCCATACCGGAGGGACAGGGACGGCCGCCGTGGTCCAAGCAGGTT
TGAGCTGCCTTATTTAATGAAACACGATGAACATTTGCCATCGTATATCAAGCGTTGCTGCTTTCTCTCCTAACTGTATG
TGTTGGCCATAATGCTACCTGAAGAGGCCTTACTCTAGCCCTGGTTTCTATGATGGTAGCAGGGGCCTGTCTATCCTCTA
ATTATTTCCTTTACTTGTACTGCAGGTCTGCTAGTGATTTGTGCAACAACTGTAAGCGTCCAGGGCATTTTGCTAGAGAT
TGTCCAAATGTGTCTGTCTGCCATGCCTGTGGCCTTCCAGGGTAAGGACTGTTACTTGTTTGGTCATGCGGATCTGAGAT
TTTGCAGTCTTGTATGTTAGCTCATGTTAAGATCTTCCATTGTGTAGCAACTTTTTTATTGTATTCTTGACTTCTTATTC
ATAATGATTCCAATGCTTTCAATATTCTCAATAGCCCTGCTATTTTCTAGTGCATATTTTACACCAGATTACCATAATTG
TTGGTTGCAGTTATTTGCTTTTGTATGCCGTATTGTATCTAGAACTCTGTCCATCATCATGTAACTATTGCATTTCTTTT
CCTGTGGGGTTTTCATGCTTTTAATATTCTTGGTACACCTAGTTGTTTTCCAGTGTATATTTTACATTGGGTTACCATGA
TTAATGGTTGCAATTATTTGCTCATGCTTAACCATTTTGAGGCACCTTATGTTCTTGTCATGTTTAATGAGAAATCTAGT
ATCGGCATGAATTGATAGTT-ATTTGAGATCCCCCCACCCCCCTCAAAACAATACATGTGTCACCTGTCTTAAGTCATTT
GTAATCATCTTATGTTAGTACCTTTTTAGT------GCAAGTGCCTTGTACAAGGATTTGGTTCATTTTTCATAATTTAT
TCTGGATGCAAATATATTATCAGAAGGCGGTGGTTAACAAATAATGATACTTGAAGCTTGAACCGTGCGTAGATCATAAC
CATCATAAAAATGACCAGTACATGATAAATTGTGAAGCTTAAGTTGTACTCCCTCTGTCCTAAAATAAGTGTCTCAACTC
TAGTACAACTTTGTACTAAAGTTAGTATAAAGTTAAGACACTTATTTTGAGACGGAGGGAGTACATAGGTCATACGTTAT
TCTTCCATGTGACC--AGGAAAGCC-TGCATAGTACATCCTCTACCTTTCTTCTGAGGCAAAAACATTGCCCACTCAATT
TTTAAATTTCTGCAGGCACATTGCAGCTGAGTGTTCTTCCAAAGATCTCTGCTGGAACTGCAAAGAGCCTGGGCACATGG
CTAATGCCTGCCCGAACGAAGGGATATGCCGCAACTGTGGCAAATCAGGCCACATTGCAAAAGACTGCACTGCTCCGCCA
ATGCTGCCTGGAGAAGTGAAGCTCTGCAACAACTGCTACAAACCAGGGCACATTGCCGTGGAGTGCACCAACGAGAAGGC
CTGCAACAACTGTAGGAAGAGTGGCCATCTTGCCCGTAACTGCACCAATGAGCCCGTTTGCAACCTCTGCCATGTTGCAG
GGCATTTGGCCCGTCAATGCCCCAAATCCGACGAGATCAACGAGAGGGGTGGGCCTCCTCCCTTCCGTGGCAGCGATGCT
CTGTTCCGTGGCGGCGATGCTCTGTTCCGTGGCGGTGATGCTCTGTTCCGTGGTGGCGATGCTCCCTTCCGTGGCGGTGA
TGCTCCCTTCCGCGGTGGCGGTGGTGCTCTCTTCCGTGGTGGCTACAGTGATGTGGTCTGCCGGGCCTGCAACCAGGTTG
GCCATATGAGCCGTGACTGCATGGGTGGCGCCTTCATGATCTGCAACAACTGCGGTGGCCGTGGTCACATGGCTTACGAG
TGTCCATCTGGGAGGCTCCTGGACCGGTTCCCTCCACGCCGATACTGAACGACTACCAAGAGCTCTTTCAGATGACTGTT
CCTTTTGATCCATCGTGTTGTGAATCATCATTTTGACGTGCGTCGTGTTTTTGAATGTC-AAGGGATTGAGTATTCCAGT
TGTTTCTGCAACTTGTTAGTCTCGTGGTTATTGAATGGCTTCTAGGGTCTTTCCAGATCAGACTCCCTTGCTCCCTCTGT
TTTGAATAATAATTATTTTCATGGATTAGTGAATACCAAGTGGTTATCTGTAAATTGTGATTTCAGCTA-----------
--------------------------------------------------------------------------------
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----------------------------------------------
>chr1B_2
-GCCACAGCCTTTTTTAAAACTTTGCGTTACGACTTCTAGTCTTCTACGGGTGGCTCGCTTTCTGTGAGCCGTCCACTGG
AGATCGGACGGCTAGGAAAATCACGTGCTCCCTCTTATAGCCTGGATCTGC----GTCGTCTTCCCGACCGACCGACCGG
GTGCCTTCGGTGTCCGGACCAACCCAATCCCAATCCAACATCGCGAGTCGGGGTCTCTGTCCCTCACCGTCGCCGCCGCG
GCTTCCCCCCGCTGACCTCCGCCGGAGTTCGCCGGACTCGTAGGGTTTCTTCAGTCGTCCTCTTCCCTGCTGGAGATCCG
TACCCTAGGTAAGCCTCGGTTTCGTCGACTTCACCTTCACCTAATTTGCGCCGTGTTAGCAGAAATCGGCCCGTCTTCCC
CGAGATTTCGTGCCTTTAGCTG--TAC----------GCGTATGTTGCCCGAGTAGATGCGAACCCGCTTGCTGTTGCCC
GATGTGGTCGCCGCCCCTAGGGTTTCTTTCATTGAAGC-TTGGGCTTTGTCCGATAGGACTTAGGAGCATGGCCCGGTGG
AACTGTTGAGGCGCTCATATGTTGATAATCCAGCGTGCTTGAGGTGGTTGTAGGACGGTTCATGGCTGTAG-------GG
TCAGGTGGTAAAACAAAATTTATTGGTAGGGCGTGAATTG---GGTGATGTTGTTGTCTGGGAAGGAAACCCTCTGCGTC
ACGAGAAATCAAGATGCGGGG-CGGTGCTTGCATGTCGTGAATGGTCGTGGCGGAAAGTAGGGGAAGTTCGTGCGGCCTA
CCGTTGGAATTCAGCGTGCTTAGTAGAGGATGATGATGGTTGTTGGCCTCATGGGGTTGGATTTCAGCCTGTGGTTTTGT
TGTCGACAGGAAGGAAGG----GAGGAAGGAAGCAGGGTGAGTTGTGGTGATTTTGTGGTTTGGACGTGTGGTGTTCACA
GTTTGGTGGGAGCTTGGAGGCAGGAGATTTAGAAGGAAGGGTTGACGATGAGCAGCCGAAGCCCGCCGCCGAGGGACCGG
AGGATGCGTACTGAACGCACCTTGTACCGTGACGCGCCATACCGGAGAGACAGGGACGGCCGCCGTGGTCCAAACAGGTT
TGAGCCGCCTTATTTAATGAAACACGATGAACATTTGCCATCGTATATCAAGCGTTGCTGCTTTCTCTCCTAACTGTATG
CGTTGGCCATAATGCTACCTGAAGAGGCCTTACTCTAGCCCTGGTTTCTATGATGGTAGCAGGGGCCTGTGTATCCTCTA
ATTATTTCCTTTACTTGTACTGCAGGTCTGCTAGTGATTTGTGCAACAACTGTAAGCGTCCAGGGCATTTTGCTAGAGAT
TGTCCAAATGTGTCTGTCTGCCATGCCTGTGGCCTTCCAGGGTAAGGACTATTACTTGTTTGGTCATGCGGATCTGAGAT
TTTGCAGTCTTGTATGTTAGCTCATGTTAAGATCTTCCATTGTGTAGCAAC-TTTTTATTGTATTCTTGACTTCTTATTC
ATAATGATTCAATGTTTTATTT---------TAGCCCTGCTATTTTCTAGTGCACATTT---------------------
---------GTTATTTGCTTTTGTATGCCGTATTGTATCTAGAACTCTGTCCATCATCATGTAACTATTGCATTTCTTTT
CCTGTGGGGTTTTCATGCTTTTAATATTCTAGGTAGACCTAGTTGTTTTCCAGTGCATATTTTACATTGGGTTACCATGA
TTAATGGTTGCAATTATTTGCTCATGCTTAACCATTTTGAGGCACCTTATGTTCTTGTCATGTTTAATGAGAAATCTAGT
ATCAGCGTGAATTGATAGTTTATTTGAGAT-CCCCCACCCCCCTCAAAACAATACACGTGTCACCTGTCTTAAGTCATTT
GTAATCATCTTATGTTAGTACCTTTTTAGTACAAGTGCAAGTGCCTTGTACAAGGATTTGGTTCATTTTTCATAATTTAT
TCTGGATGCAAATATATTATCAGAAGGCGGTGGTTAACAAATAATGATACTTGAAGTTTGAACTGTACATAGATCATAAC
CATCATAAAAATGACCAGTACATGATAAATTGTGAAGCTTAAGTTGTACTCCCTCCGTCCTAAAATAAGTGTCTCAACTC
TAGTACAACTTTGTACTAAAGTTAGTATAAAGTTAAGACACTTATTTTGAGATGGAGGGAGTACATAGGTCATACGTTAT
TCTTCCATGTGACCAGAGGAAAGCC-TGCATAGTACATCCTCTACCTTTCTTCTGAGGCAAAAACATTGGCCACTCAGTT
TTTAAATTTCTGCAGGCACATTGCAGCTGAGTGTTCTTCCAAAGATCTCTGCTGGAACTGCAAAGAGCCTGGACACATGG
CTAATGCCTGCCCGAACGAAGGGATATGCCGCAACTGTGGCAAATCAGGCCACATTGCAAAAGACTGCACTGCTCCGCCA
ATGCTGCCTGGAGAAGTGAAGCTCTGCAACAACTGCTACAAACCAGGGCACATTGCCGTGGAGTGCACCAACGAGAAGGC
CTGCAACAACTGTAGGAAGAGTGGCCATCTTGCCCGTAACTGCACCAATGAGCCTGTTTGCAACCTCTGCCATGTTGCAG
GGCATTTGGCCCGTCAATGCCCCAAATCTGACGAGATCAACGAGAGGGGTGGGCCTCCTCCCTTCCGTG-----------
----------GCGGCGATGCTCTGTTCCGTGGCGGTGATGCTCTGTTCCGCGGTGGTGATGCTCCCTTCCGTGGTGGCGA
TGCTCCCTTCCGCGGTGGCGGTGGTGCTCTCTTCCGTGGTGGCTACAGTGACGTGGTCTGCCGGGCCTGCAACCAGGTTG
GCCATATGAGCCGTGACTGCATGGGTGGCGCCTTCATGATCTGCAACAACTGCGGTGGCCGTGGTCACATGGCTTACGAA
TGTCCATCTGGGAGGCTCCTGGACCGGTTCCCTCCACGCCGATACTGAACGACTACCAAGAGCTCTTTCAGATGACTGTT
CCTTTTGATCCATCGTGTTGTGAGTCATCATCTTGACGTGCGTCATGTTTTTGATTGTC-AAGGGATTGGGTATTCCAGT
TGTTTCTGCAACTTGTTAGTCTCGTGGTTATTGAATGGCTTCTAGGGTCTTTTCAGATCAGACTCCCTTGCTCCCTGTGT
TTTGAATAATAATTATTTTCATGGATTAGTGAATACCAAGTGTTTATCTGTAAATTGTGATTTCAGCTATTTTATTAACT
GGATCATTCTGTTGAGAGTGGATCTATATGAATGGAGCGCGTTATGTTAATGCTTACAAATTTCATGGTCTAAACTGTGT
TTTCAG---TATTACTCCCTCCGTCTCAAAATAAGTGTCTTAAGCTTAGTACAAATTTATACTAGAGCTAATACAAAATT
GAGACACTT------ATTAATACTGTACAATCTTATAACTGGAGCTTGCGTGTGAAGTGAAATGGATGTACATATTTTTT
CTTC--ATAGACAGATGATAAATATTCAGTATGACCATCAAGCGCACAAGCTTAATCATACTCTTC-TATTGAAAGCCAA
TCCACAGACATATACGTAGATAGCAAGCTCGCTTGAAGGTTATCTGGGAAATATTATTGGTCAGCGTAACAAGTTCAGGG
ATGTTCACCACACTTGCAAAA-----AAAAAATAACAGAACAAGAACTACACATGCCCAGCTCAACACAACTATTTTCAC
AATGCCATAACTGAACAAGATCATCAGGGAGGCGCTGAGGATGCACTCTATAAGACCATCTAATCCAACTTCGCGTAAGC
GAATCCGTCGGCACCTT---TCTCGCCGTCGCTTGGCGCCAGATCCTTCAACTATTTCATGCAGGGGGGACAAGAAAAGT
CAATAAAATTAGCTCCACATATATAGTCACCTTAACAGCCAATTAGCAGATGGCAGTTTTGCAAACTGCAAAAAAAAATG
CACGATACTATTTCTTAGGTAAAGTACAAGTAACGACAGAAGA---
>chr1D_3222
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-------------------------------------------------------------------TATT---TTAACT
GGACCATTCTCTTGAGAGGGGATCTATATGAATGGA--GCGTTATAATAATGCTTACAAATTTCATGGTCTAAACTGTGT
GGTAAGTATTATTATTTCACATTTTCTTAAGGCAGTTGTTGCAAATTTGGTAGTATGTCCTATTGTGCTATCCTCCCAAA
GTTTAAAACGTTGCAATTGATACTGTACAATCTTATAACTGGAGTTTGCGTGTGAACTGAAATGGATGTACATTTTTTTC
CTTCATATAGACAGATGATAAGTATTCAGTATGACCATCAAGCGCACAAGCTTAATCATACTTTTCTTATTGAAAGCCAA
TCCACGGAGATATAGC-AGATAGCAAGCTCATTTAAAGGTTATCTGGGGAATATTATTGGTCAGCGTAACAAGTTCAGGG
ATGTTCACCACACTTGCAAGAAACACAAAAATTCACATAACAAGAACTACACATGCCCAGCTCAACACAACTATTTTCAC
AATGCCATAACTGAACAAGATCATCAGGGAGGCGCTGAGGATGCACTCTATAAGACCATCTAATCCAACTTTGCGTAAGC
GAATCCGTCGGCACCTTCTTTCTCGCCGTCGCTTGGCGCCAGATCCTTCAACTATTTCATGCAGGGGGGACAAGAAAAGT
CAATAAAATTAGCTCCACATATA----CACCTTAACAGCCAATTCGCAGATGGCAGTTTTGCAAACTGAAAAATAATGT-
-ACGATACTATTTCTTAGGTAAAGTACAAGTAACGACAGAAGA---
>SNPs
S-------------------------------------------------------------------------------
----------------SSS--------S-----------------------SSSS-------------------------
--------------------S-----------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------S--------------------------------------------S--------
--------------------------SSSSSSSSSSS-------------------------------------------
------------------------------S-------S------------------------S----------------
------------S-------------------S--------------------------------------SSSSSSS--
----------------------------------------SSS-------------------------------------
-------------------------------S--------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S------------S---------------S-----------S---------S
---------------------------------S-------------------------------S-----------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-------S----------------------S----------------S--------------------------------
--------------------S--S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-------------S----------------------------------------
--------------------------------------------------------S-----------------------
---------------------------------------S----------------------------------------
--S----------------------S----------------------S-----------------S------------S
--------------------------------------------------------------------------------
----------------S--------------------------------S------------------------------
-----------------------------------------------------------------------S--------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
------------S-S--------------------S--------------------------------------------
----------------------------S--S-----------------------------------S------------
----------------------------------------------------------S---------------------
----------S------------------------------------------------S--------S-----------
----------------------S-------------------------S-------------------------------
-----------------------------------------------------------S--------------------
----------------------------------------S------------------S--------------------
----------------------------S-----S-----------------------------S---------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------------S-----------------S--------------
-S-----------------------------------------------------S------------------------
--------S-----------------------------------------------------------------S-----
---------S-------------S------------S-------------------------------------------
-----------------S---------------------------S----------------------------------
--------------------------S-S--------------SSS
>forward_347
--------------------------------------------------------------------------------
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-------GGTAAGCCTCGGTTTCGTCA-----------------------------------------------------
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>reverse_2243
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--CTCCATGTGACCAGGAAAGC----------------------------------------------------------
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----------------------------------------------
>forward_682
--------------------------------------------------------------------------------
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----------------------TTGTTAGGGCGCGAATTGTG--------------------------------------
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>reverse_2552
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-----------------------------------------------------------------------TGAGAAGGC
CTGCAACAACT---------------------------------------------------------------------
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----------------------------------------------
>forward_683
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-----------------------TGTTAGGGCGCGAATTGTGT-------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_2792
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CGGTGGTGA
TGCTCCCTTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_2450
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GCAACTGTGGCAAATCAGGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_3850
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AGCACCTTCTTTCTTGCCGT---------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
