>input_sequence_40138
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATGAA-------------------GAGAAAAAAACGAAAAATAGAATACCC--GCTTCTCCTGCCTTC
AGCCACTGTGCGTCTGTGCCCCACCTGGATCCCTCCACCGCCGTCACACGGACACGCCTGCACCACCCATCCGAATCCCG
CATCTCTTCCTTCTCTTTCAGCGTGCCACCGCCCGACGTCGTCACTGCGCAAGAAGC---ATCTCGCCGTCCTGTTGCTT
TCTGCGACTGCGCGAGCGATGGCCGTCGCCCAGGCCGCAGCGGTCGTCACGCCGGTGGTGGCCGGGGCGGCGCCATCCAT
CTCTCCGCGGCCGTCGTCCCGGGGACCGGCCGGAGCCGGAGGCGGGCTGGGGTGGCGCCGCCGGCCGAGGGGGAGCGCCC
GCCGCGGCCTGGTCATCGCGGACGCGTTCGGCGGACAGTACGAAGACGGGTTCGGGGACGTGGAATTGGTACGTACGTAC
GGTGCGCTTGAATGGTCGCTCGACTAACTGGTATCCACATTAA-GTCGGTGGGC--GCGTACTGATTTGCGCAAAGAAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GATTGATACGTATATATCAGAGTAGCAGTAGTTTCTGACGAA
ACGATAGTATTCATGTGTCTCCCCTTTTTCTTTCCGGGGAATATTCATGCGTATCCTCGAGAGCGCAATTGAACCTCTGA
ACTTGTTTCATATATTCTGTTTT-TCGCGTGATTCCCATGAATATT----------------------------------
-------------TATAACGAGTAAAACCTTAACACGTTCGCTGATTCTTAGGTGTTTTTTTTGTTTCTAAAAACTAATT
CAGATAGAACAGTGTACTATTAAGTCTAAAAAATTGCAATCTTTGAACATGCACTATTATAGTGCAGATTTTGGTTTGTG
GGTTACATATGAAGCGACTTTGGACGTGAGAGCAGTTGGATGTTGATCCAAAGGCTTAGAAATATGAACGAGATTTTAAA
AGATCCCAAGCAACTTTTAAAATTTACCGAGAAAAAGCAACTTATAAATAGACAATCCCTTTGAAGATAGAGAAAGTCCA
TGCAAAACATGAAAGCAAATTCAGACGGGGAAATGGCATCTTGCCAAAAATCA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TACAAGAGTGAGATACAGTCCATA
GGAATATCGA---TGGCCTCATTTTCTTATCCAAAAAGCCTATATATGGAAAAGAAAGTAGGGTGTATCAAAATCCTACA
AGATTCTTATGGGAGTTATCTGATCCAAATAGGCCCTTCGAAAGATGGCTTGGATATCCTTTCAAACCAGGCAGCTTAGG
TGTAGGCCGTCCCCT-------------------------------------------CCGTGGTTTGTATCACTATGT-
-CTA----CGCCATATTTTTCGATAGCCGTCCCCTTTGACATGTCTCCATTTGCAGGAAATCATGAATTACTTCACTTAC
AAGGCCACACAGACGGTTCTCTATCAGTTGTATGAGATGAATCCGCCGGCATACACTTGGCTTTATAAGTAAGATCTTTT
CTCCTTGGCCTCTTGCATGCAAATGGGTTTCCCTGTTGGACAGTTCGAATACTTCAAAATATTTTTTCAAATATTATACT
TGTCCTTTGTCAGTTATCTTGTCGTCAATGACGCAAAAGAGGGTATACATTTCCTGCGAGCACTCTCGAAGGTATCATCT
TCGTCTCTTGCTCCCCGAGGCTACCGAAACGAAAAACGAGGAAATACAACAGTGCGTTCCTGATCATTTCTTAACCTGTT
ACGTACATGTATACCAGGAGAGGCAAGACCTGGCAGAGAGGGTGATGGTCACGCGCCTTCACTTATACGGCAGATGGATC
AAGGTAAAT---GCAGGCAGAGAGCCATTTCACCGGTTCTAAGATAAGCATAGGATGCAAAATGCAGAAGAAAAATATTT
ACCTCTGTTTTTTTTTT---------CATATGATCAGAAATGCGACCATACGAAAATGTATGAGAGGATTTCGCATGAGA
ACTTGGAGCTCATGCGTGAGAGGCTAATGGAAACAGTGGTGTGGCCAACTGATGACACGAACTCCAGCGACAAGCAAGAT
TGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr2A_1_TraesCS2A01G198700
TGATGGGACAT-GGGGACGGTGCCAAATCGACGGGGTGCGAGCCTCGATTTATGTCGATAGTCAAGCTAGTGTCACCGGC
GAGAACTCGTGACCTAGTCCGTGATCGCCCGTGCGTGGGAACAACTTGCACAAAAGACGATGCCGCCAACGGCAAGCAAA
AAACCAAACCAACACCAGCCAATGTGGAAGCACACGTCCGACGATGACACTGGCCCAAAGGCTTCTAGACGTCATTGACC
ATGTCGCCAAGATAGGGTTGAAGCTGGGGCGCCGTTATTTAAAGCAACGTCACCACCTCCATCCGAACAACGTCATCATG
GAACCAAAACCTAATCCAAACAACATACCAAACACGTAAAACTAAGGTTCCCCCTCTCTCGCCGCTGGTGAAGCAGATAG
AGGGGAGGGAAACCACCGACCTTGACAACGGGAGGAGGTAGAGATTCGGAGAGGGGAGGGATTTGAGGGTACCGGCTAGG
TGAGAGTTGAGATGGATTGCTGCTCCTCTTGTGC-TTTGATGCTTTTATGAGTTTTCTTAGGGGTTGTGTCCTGCTTAGA
GAAACGAGGCGACAGTGGCTCTGTGAAGATGGAATAAGGTACTCCCCGCCTAGCTCCCGTCCCAGTGGTGCTTCTAGCGT
CATCGGAGGGCA--TGTGGTGGTTTGTCTCCGGTGGATCTCGCGGGATTCGGTCGACATTTGTC-TTCGGTGGATACACA
TGGATTCGGTATTTGTTTGTGTGTCTACAGGTGGAGTCCTTCTGATCTAAATTTCTCTTCAACGGCGGCGGTTGCTGTTC
TGATTCGCTGGTCTTATAGGACCTTAGCACGATAACTTCCTGACTGTCTACTAGTACAATAAGTTTTGCCTGGCTCTAGT
GAGGAAGGGGCGACGACGACGGCGTTCCTCTAACTCACTTCAGTATTTGTAGTCGTCGCTAGGTGTTCTACGGATTTAAA
TATAATTTTTATTATTTTGATGATG-----------------------------------------------AAAAAAAG
ATTCTGCAGAAAATGAA-------------------GAGAAAAAAACGAAAAATAGAATACCC--GCTTCTCCTGCCTTC
AGCCACTGTGCGTCTGTGCCCCACCTGGATCCCTCCACCGCCGTCACACGGACACGCCTGCACCACCCATCCGAATCCCG
CATCTCTTCCTTCTCTTTCAGCGTGCCACCGCCCGACGTCGTCACTGCGCAAGAAGC---ATCTCGCCGTCCTGTTGCTT
TCTGCGACTGCGCGAGCGATGGCCGTCGCCCAGGCCGCAGCGGTCGTCACGCCGGTGGTGGCCGGGGCGGCGCCATCCAT
CTCTCCGCGGCCGTCGTCCCGGGGACCGGCCGGAGCCGGAGGCGGGCTGGGGTGGCGCCGCCGGCCGAGGGGGAGCGCCC
GCCGCGGCCTGGTCATCGCGGACGCGTTCGGCGGACAGTACGAAGACGGGTTCGGGGACGTGGAATTGGTACGTACGTAC
GGTGCGCTTGAATGGTCGCTCGACTAACTGGTATCCACATTAA-GTCGGTGGGC--GCGTACTGATTTGCGCAAAGAAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GATTGATACGTATATATCAGAGTAGCAGTAGTTTCTGACGAA
ACGATAGTATTCATGTGTCTCCCCTTTTTCTTTCCGGGGAATATTCATGCGTATCCTCGAGAGCGCAATTGAACCTCTGA
ACTTGTTTCATATATTCTGTTTT-TCGCGTGATTCCCATGAATATT----------------------------------
-------------TATAACGAGTAAAACCTTAACACGTTCGCTGATTCTTAGGTGTTTTTTTTGTTTCTAAAAACTAATT
CAGATAGAACAGTGTACTATTAAGTCTAAAAAATTGCAATCTTTGAACATGCACTATTATAGTGCAGATTTTGGTTTGTG
GGTTACATATGAAGCGACTTTGGACGTGAGAGCAGTTGGATGTTGATCCAAAGGCTTAGAAATATGAACGAGATTTTAAA
AGATCCCAAGCAACTTTTAAAATTTACCGAGAAAAAGCAACTTATAAATAGACAATCCCTTTGAAGATAGAGAAAGTCCA
TGCAAAACATGAAAGCAAATTCAGACGGGGAAATGGCATCTTGCCAAAAATCA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TACAAGAGTGAGATACAGTCCATA
GGAATATCGA---TGGCCTCATTTTCTTATCCAAAAAGCCTATATATGGAAAAGAAAGTAGGGTGTATCAAAATCCTACA
AGATTCTTATGGGAGTTATCTGATCCAAATAGGCCCTTCGAAAGATGGCTTGGATATCCTTTCAAACCAGGCAGCTTAGG
TGTAGGCCGTCCCCT-------------------------------------------CCGTGGTTTGTATCACTATGT-
-CTA----CGCCATATTTTTCGATAGCCGTCCCCTTTGACATGTCTCCATTTGCAGGAAATCATGAATTACTTCACTTAC
AAGGCCACACAGACGGTTCTCTATCAGTTGTATGAGATGAATCCGCCGGCATACACTTGGCTTTATAAGTAAGATCTTTT
CTCCTTGGCCTCTTGCATGCAAATGGGTTTCCCTGTTGGACAGTTCGAATACTTCAAAATATTTTTTCAAATATTATACT
TGTCCTTTGTCAGTTATCTTGTCGTCAATGACGCAAAAGAGGGTATACATTTCCTGCGAGCACTCTCGAAGGTATCATCT
TCGTCTCTTGCTCCCCGAGGCTACCGAAACGAAAAACGAGGAAATACAACAGTGCGTTCCTGATCATTTCTTAACCTGTT
ACGTACATGTATACCAGGAGAGGCAAGACCTGGCAGAGAGGGTGATGGTCACGCGCCTTCACTTATACGGCAGATGGATC
AAGGTAAAT---GCAGGCAGAGAGCCATTTCACCGGTTCTAAGATAAGCATAGGATGCAAAATGCAGAAGAAAAATATTT
ACCTCTGTTTTTTTTTT---------CATATGATCAGAAATGCGACCATACGAAAATGTATGAGAGGATTTCGCATGAGA
ACTTGGAGCTCATGCGTGAGAGGCTAATGGAAACAGTGGTGTGGCCAACTGATGACACGAACTCCAGCGACAAGCAAGAT
TGACGGTTACATATTGAGTAGGATAAGACTGCTTCACTCGACAATGTACTACACGTGGCAGAATCCCTGCAGATTTTGAG
TGTCGATTTGGGTTACTCATTTGTGGATATAACCCTGC------------ATGAATAGAATAGTCGGTGTACATTCTATC
GTAGGGGTTTGTGTGAATGTCACTTAATGATTTTTGTCCTGTGAACTCGAAAAAAATAT--CACAACGTGTGATAATTTT
GTTTGTTCATGTTTGACAGTGTGCCTGTGTTCTCTATACTAAGATTTGTATTGAGCATTCAAAAAATATCAGAACGTGCG
ACATTTTGTTTGCTCATGTTTGACAGTGCCTGTTTTCTCTATACTAAGATTTGTATTGAGCATTCAAAAAATATCAGAAC
GTGCGGACATTTTGTTTGCTCATGTTTGACAGTGTGCCTGTGTTCTCTATACTAGGATTTGTATTGAGCATTCGGGTTTA
CTGAACTTCCTTCTCTCTTCCTTTTTTTTACTCTTGGGGATGCACAGCATGAGATTGCTCGATTTAACTAA--ATATGAA
GAAAACAACACGTCATGATCAAGATTGCTAAGGGTAAACGTCATGTCGAAGAGAGCCTTCCTTCAGGCCGAATGTCTGAA
CCCAGTCGGACGAAGCCTGCCACATATACTATACTTA--TACAATAACAATACCTGTTGCAATCCGCTGAACCAAGCGGC
CGTAATAGCTTCCTGTCTTCGACCATCGGAACAACATTTGGGCGGAGATATCCTCGAGCACTGTGGCCTCTTTTCGTGGT
GGTGCCTGCTTTTGTCCCTAATCTTGGCCGGCCATGGCGATGCAAACCAAGCCCCGTCTCACCTGTTGGGAAGCTCGATT
CATTGTTCATTATTTTAGAGCTTCAGATAGCTCCACCTCCACCAATGTTAGAGCTCCAAACCTGAGCTGCTCCTCTTCTT
GTCTTACATCTGTCTTCTCAGGAATTGGCAGGCCGGCAGTATGACAACCCGAGTAAAATGC
>chr2B_1
TGATGGGATATGGGGGACGATGCCAAATCGCCGGGGTGCGAGCCTCGATTTATGTCGATAGTTAAGCTAA-GTCACAGGC
AAGAACTCGTGACCTAGTCCGTGATCGCCCATGGGTGGGAACAACTTGCACAAAAGACGATGCCGCCAATAGCAAGCAAA
CAATCAAACCAACACCAGATGATGTGGAAGCACACATCCAACGATGACACTGGCCCAAAGGCTACTAGACGTCATTGACC
ATGCCGCCAAGATAGGGTCGAAGCTAGGTCGCTGTTATTCAAAGCAACGTCACCACCTCCATCTGAACAAC---ATCATG
GAACCAAAACCTAATCCAAACTACATACCGAACATGTAAAACTAAGGTTCCCCCTCTCTCGCCGCCGGTGTAGCAGACAG
A-GGGAGGGAAACCACCGACCTTGACAACGGGAGGAGATAGAGATCCGGAGAGGGGAGGGATTTGAGGGTACCGGCTAGG
CGAGAGTTGAGATGGGTTGCCGCTCCTCTCGTGTGTTTGATGCTTTTCTGAGTTTTCTTAGGGTTGGTGTCCTGCTTAGA
GAGACGAGGCAACGGTGGCTCTGTGAAGATGGAATAAGGTACTCCC-GCCTAGCTCCCGTCCCACTGGTGCTTCTAGCGT
CATCGGAGGGTGTGTGTGGAGGTTTGTCTTCGGCGGATCTCGCGGGATTCGATCGGCTTTTGTCTTTCGGTGGATCCATA
TGGATTCGGTATTTGTTCGTGTGTCTACAGGTAGGATCCCTTTGATCTAAATTTCTTTTCAACGACGGCGGTTGCTGCTC
TTGTGCACTGGTCCTAAAGGGCCTTAGCATGACAACTTCCCGACTGTCTACTAC------AAGTTTTGCCGGGCTCTAGT
GAGGGACTGGCGATGACGGCGGCGCGCCTTCGTCTCGCTTCAGTACTTGTACTCGTCGATAGGTGGTCTATGAATATGAA
TATAATTTTTATTATTTTGGTATTCATTGTATAATCATAATTGATGATGAATAGATTGAAAGTTTCTTTTTTAAAAAAAG
ATTCTGCAGAAACTGGAAAAGAAACATAAAAGAAATGAAAAAATAACGAAAAATAGAATACCCTCTCTTCTCATGCCTTC
AGCCACTGTGCGTCTGTGCCCCACCTGGATCCCTCCACCGCCGTCACACGGACACGGCTACACCACCCATCCAAATCCCG
CATCTCTTCCTTCTCTTTCAGCGTGTCACCGCCCGAGGTCGTCAGTGCGCAAGAAGAAGTATCTCGCCGTCCTCTTGCTT
TCTGCGACTGCGCC-GCGATGGCCGTCGCCCAGGCCGCAGCGGTTGTCACGCCGGTGGTGGCCGGGGCTGCGCCGTCCGT
CTCTCCGCGGCCGCCGTCCCGGGGACCGGCCGGAGCCGGAGGCGGGCTGGGGTGGCGCCGCCGTCCGAGGGGGAGCGCCA
GCCGCGGCCTGGTCATCGCGGACGCGTTCGGCGGGCAGTACGAAGACGGGTTCGGGGACGTGGAATTGGTACGTACGG--
--------TGAATGGTCGCTGCACTAACTGGTATCCACATTAG-GTCGGTGGGC--GCGTACTGATTTGCGCAAAGAAAA
GATTTTTTTTGAGCATCAGTACAGACACTAGCGCTCATATACACGCGCATACACTCACCCCTATGAAAGCACGCGCGCAC
ACCCTACCCCTATGAGCACCTCCGAGAGACTGAGCCGGCATATCTTCTTGAAATTTATGAAGTCATTATAGGCGCCTCGT
CGTCGACGGGAACGTCTCCTCCCATTGAAATTTACGAAGATTGATACGTATATATCAGAGTAGCAGTAGTTTCTGACGGA
ATGATAATATTCATGTGTCTACCCTTTTTCTTTCTGGGGAATATTCATGCGTATCCTC--------AATTGGACTTCTGA
ACTTGTTTCTTTGCTAATCCTCTGTCGCGTGATTCCCATAAATATTAGTG---GTCACTTAAGAAGTGCACATTTTCAAA
CATAGAATCACAGTACAACGAGTAAAACCTTAACAAGTTTGCTGATTCTTAGGGTTTTTGTTTTTGA--AAAAACTAATT
CAGATAAAGCAGTGTACTATTAAGTCT--AAAATTGCAATCTTTGAACATGCAATATTCTAGTGCAGATTTCGGTTTGCA
GGTTACATATGAAGCGACTTTGGACGTGAGAGCAGTTAGATGTTGATGCAGAGGCTTAGAAATATGAATGAGATTTTAAA
AGATCCGAAGCAACTTTTAAATCTTTACCGAGAAAAGCAAATTATAAATAGACAATCCCTTTGAAGATAGAGAAAGTCCA
TGCAAAACATGAAAGCAAATTCAGACGGGGAAATGGCATCTTGCCAAAAATCA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TACAAGAGTGAGAAACAATCCACA
GGAATATTGATGATGGCCTCATTTTCTCATCCAAAAAGTCTATATATGGAAAAGAATGTAGGGTGTATCAAAATCCTACA
AGATTCTTATGGGAATTATCTGATCCAGATAGTCCCTTCGAAAGATGGCTTGGGTATCTATTCATACCAGGCC-------
-------------------------------------TAGACTGTCCCCTTACCTTAGCCGTGGTTTGTTTCACTATATG
CCTA----TGCCATATTTTTCGATGGCCGTCCCCTTTGACATGTCCCCATCTGCAGGAAATCATGAATTACTTCACTTAC
AAGGCCACACAGACGGTACTCTATCAGTTGTATGAGATGAATCCGCCGGCATACACTTGGCTTTATAAGTAAGATGTTTT
CTCCTTGGCCTCTTGAATGCAAATTGGTTTCCCTGTTGGACAGTTCAAATACTTCGAAATATTTTTTCAAAAATTATACT
TCTCCTTTGTCAGTTATCTTGTCGTCAATGACGCAAAAGAGGGTATACATTTCCTGCGAGCGCTCTCGAAGGTACCATCT
TTGTCTCTTGCTCCCCCAGGTTACAGAAAAGAAAAACCAGGAAATACAGCAGTGCGTTCCTGATAATTTCTTAACCTGTT
TCGTAAATGGATACCAGGAGAGGCAAGACCTGGCAGAGAGGGTGATGGTCACACGCCTTCACTTATACGGCAGATGGATC
AAGGTAAAT---GCAGGCAGAGAGCCATTTCAACGGTTCTAAGATAAGCATAGGATGCAAAATGCAGAAGAAAAATATTT
ACCTCTCCGTTTTTTTTTCTTTTTGGCATATGATCAGAAATGTGACCATACGAAAATGTACGAAAGGATTTCGAATGAGA
ACTTGGAGCTCATGCGTGAGAGGCTAATGGAAACAGTGGTGTGGCCAACTGATGACACGAACTCCAGCGACAAGCAAGAT
TGACGGTTACATGTTGAGTAGGATATGATTGCTTCACTCGATAATGTACTACACGTG--------------------GAG
TGTCGATTTGAGTTACTCATTTGTGGATATAGTCCTTTATCAGAAAGAAAATGAATAGGATAATCGGCGTACATTCTCTC
GTAGGGGTTTGTGTGAATGTCACTTGATGATTTTTGTCCTGTGAAGTCGA-AAAAATAT--CAGAACGTGCGATAATTTT
GTTTGTTCATGTTTGACAGTGTGCCTGTGTCCTCTATGCTAAGATTTGTATTG---------------------------
----------------------------------------------------------GGCATTCAAAAAATATCAGAAC
GTGTGATAATTTTGTTTGTTCGTGTTTGACAGTGTGCCTGTGTTCTCCATACTAAGATTTGTACTGAGCATTCGGGTTTA
CTGACTTTCCTTCTCTCTTCCCTTTTTTTAGTCCTGGGGATGCACAGCATGAGATTGCTCGATTTAACTAA--ATATGAA
GAAAACAACACGTCATGATCAAGATCGCTAAGGGTAAACGTCATGTCGAAGGGAACCTTCCTTCAGGCCGAATGTCTGAA
CCCATTCGGGCGAAGCCTGCCAC--ATACTATACTTA--TACAATAACAATACCTGTTCCAATCTGCTGAACGAAGCGGC
CGTAATAGCTTCCTGTCTTCGACCATCAGAACAACATTTGGGCGGA--TATCCCCGAGCCCCGTGGCCTCTTTCCATGGT
GGTGCCTGCTTTTGTCCCTAATCTTGGCCGGCCATGGCGATGCAAACCAAGCCCCGTCTCACCTGTTGGAAAGCTCGACT
CATTATTCATTGTTTTGGAGCTTCAGATAGCTCCACCTCCACCAATGTTAGAGCTCCAAACCTGAGCTGCTCCTCT-CTT
GTCTTACATCTGTCTTCTCAGGAATTGGCAGGCCGGCAGTATGACAAACCCGAG-------
>chr2D_1011
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAAAACGAAAAATAGAACACCCTCGCTTCTCCTGCCTTC
AGCCACTGTGCGTCTGTGCCCCACCTGGATCCCTCCACTGCCGTCACACGGACACGGCTACACCACCCATCCGAATCCCG
CATCTCTTCCTTCTCTTTCAGCGTGCCACCGCCCGAGGTCGTCACTGCGCAAGAAGC---ATCTCGCCGTCCTCTTGCTT
TCTGCGACTGCGCC-GCGATGGCCGTCGCCCAGGCCGCAGCGGTTGTCACGCCGGTGGTGGCCGGGGCGGCGCCGTCCGT
CTCTCCGCGGCCGCCGTCCCGGGGACCGGCCGGAGCCGGAGGCGGGCTGGGGTGGCGCTGCCGGCCGAGGGGGAGCGCCG
GCCGCGGCCTGGTCATCGCTGACGCGTTCGGCGGGCAGTACGAAGACGGGTTCGGGGACGTGGAATTGGTACGTACGG--
--------TGAATGGTCGCTGCACTAACTGGTATCCACATTAAAGTCGGTGGGCGGGCGTACTGATTTGCGCAAAGAAAA
GATTGATATGTACTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CGTATATATCAGAGCAGCGGTAGTTTCTGACGAA
ACGATAATATTCATGTGTCTACCCTTTTTCTTTCCGGGGAATATTCATGCGTATCCTCGAGAGCGCATTTGGACTTCTGA
ACTTGTTTCTTTGCTAATCCTCTGTCGCGTGATTCCCATAAATATTACTACTAGTCACTTAAGAAGTGCACATTTTCAAA
CATAGAATCACAGTATAACGAGTAAAACCTCAACACGTTCGCTGATTCTTAGGTGTTTTTTTTTACG--AAAGACTAGTT
CAGATAGAACAGTGTACTATGAAGTCT--AAAATTGCAATCTTTGAACATGCACTATTATAGTGCAGATTTTGGTTTGCA
GGTTACATATGAAGCGACTTTGGACGTGAGAGCAGTTGGATGTTGATCCAAAGGCTTAGAAATATGAATGAGATTTTAAA
AGACCCCAAACAACTTTTAAATCTTTACCGAGAAAAGCAACTTATAAATAGACAATCCCTTTGAAGATAGAGAAAGTCCA
TGCAAAACATGAAAGCAAATTCAGACGGGGAAATGGTATCTTGCCAAAAATCATACTCCTTCCGTTTCTAAATATTTGTC
TTTTTTAAGATTTCAAATCAACTACCACGTACTGATATATATAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTCC
GTATGTAATCACTTGTTGAAATCTCTAGAAAGACAAATATTTAGGAATGGAGGGACTACAAGAGTGAGAAACAATCCATA
TGAATATTGA---TGGCCTCATTTTCTCATCCAAAAAGTCTATATATGGAAAACAAAGTAGGGTGTATCAAAATCCTACA
AGATTCTTATGGGAATTATCTGATCCAAATAGGCCCTTCGAAAGATGGCTTGGATATCTTTTCAAACCAGGCAGCGTAGG
TGTAGACCGTCCCCTTACCCCTCAAAAAAAAAAGTTGTAGACCGTCCCCTTACCTTAGCCGTGGTTTGTTTCACTATGC-
-CTATTGACGCCATATTTTTCGATGGCCGTCCCCTTTGACATGTCTCCATTTGCAGGAAATCATGAATTACTTCACTTAC
AAGGCCACACAGACGGTTCTCTATCAGTTGTATGAGATGAACCCGCCGGCATACACTTGGCTTTATAAGTAAGATGTTTT
CTCCTTGGCCTCTTGCATGCAAATGGGTTTCCCTGTTGGACAGTTCGAATGCTTCGAAATATTTTTTCAAAAATTATACT
TATCCTTTGTCAGTTATCTTGTCGTCAATGACGCAAAAGAGGGTATACATTTCCTGCGAGCACTCTCGAAGGTATCATCT
TCGTCTCTTGCT--CCGAGGCTACAGAAAAGAAAAACGAGGAAATAAAGCAATGCAATCCTGATCA-TTCTTAACCTGTT
ACGTACATGTATACCAGGAGAGGCAAGACTTGGCAGAGAGGGTGATGGTCACGCGCCTTCACTTATACGGTAGATGGATT
AAGGTAAATAATGCAGACAGAGGGCCATTTCACCGGTTCTAAGATAAGCATAGGATGCAAAGTGCAGAAGAAAAATATTT
ACCTCTG----TTTTTTTCTTTTTGGCATATGATCAGAAATGCGACCATACGAAAATGTACGAGAGGATTTCAAATGAGA
ACCTGGAGCTCATGCGTGAGAGGCTAATGGAAACAGTGGTGTGGCCAACTGATGACACGAACTCCAGCGACAAGCAAGAT
TGACGGTTACATGTTGAGTAGGATATGATTGCTTCACTCGACAATGTACTACGCGTGGTAGAATCCCTGCAGGTTTTGAG
TGTTGATTTGAGTTACTCATTTGTGGATATAGTCCTTTATCAGAAAAAAAATGAATAGAATAATCCGCGTACATTCTCTC
GTAGGGGTTTGTGTGAATGTCACTTAATGATTTTTGTCCTGTGAACTCGA-AAAAATATATCAGAACGTGTGATAGTTTT
GTTTGTTCATGTTTGACAGTGTGCCTGTGTTCTCTATACTA------GTATTG---------------------------
----------------------------------------------------------AGCATTCAAAAAATATCAGAGC
GTGTGATAATTTTGTTTGTTCATGGTTGACAGTGTGCCTGTGTTCTCTATACTAGGATTTGTACTGAGCATTCGGGTTTA
CTGGACTTCCTTCTCTCTTCCCTTTTTTTAGTCTTGGGAATGCACAGCATGAGATTGCTCAACTTAACTAAATATATGAA
GAAAACAACACGTCATGAT------TGCTAAGGGTAAACGTCATGTCGAAGAGAGCCTTCCTTCAGGCCGAATGTCTGAA
CCCAGTCGGGCGAAGCCTGCCAC--ATACACTATATACTTACAATAACAATACCTGTTGCAATCTGCTGAACCAAACGGC
CGTAATAGCTTCCTGTCTTCGACCATCGGAACAACATTTGGGCGGA--TATCCCCGAGACCCGTGGCCTCTTTCCATGGT
GGTGCCTGCTTTTGTCCCTAATCTTGGCCGGCCATGGCGATGCAAACCAAGCCCCGTCTCACCTGTTGGAAAGCTCGACT
CATTGTTCATTATTTTAGAGCTTCAGATAGCTCCACCTCCACCAATGTTAGAGCTCCAAACCGGAGCTGCTCCTCTTCTT
GTCTTACATCTGTCTTCTCAGGAATTGGCAGGCCGGCAGTATGACAACCCGAGT-------
>SNPs
--------S----------S----------S-------------------------------S------SS-----S---
S-----------------------------S--S-----------------------------------SS---------
S--S--------------SSS--------------S---S-----------------------S----------------
---S--------------S------S--S---S------S-----------------------S-------SSS------
---------------------S-------S----S------------------------------S----S------S--
-S-----------------------------------S-------S----------------------------------
S--------------S----S--------S---S-------------S---------------S-S--------------
--S-------S--S--------------------------------S-----------------S---------------
----------SS-------S---------S---S-----------------S---S-S-----------------S--S-
-----------------S--------------S-SS---S-S--------------S-------S------------S--
-SS-S-S------S--S---S--------S--S-------S------------SSSSSSS----------S---------
----S-SS-----S----S-----SS---SSSS---S--------S-----S------S------S----S-S--S-S--
-------------------S-SS-S-------------------------------------------------------
------------S--S----------------------S-----------------------------------------
--------------------------------------------------------S--S--------------------
------------------------------------S------------------------------------S------
-------------SS-----------------------------S-----------------------------S---S-
-------------S-----------------------------------------------------------------S
----------------------------------S------------------------------------------SSS
SSSSSSSS------------SS----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------S--------------------------------------------------S--S-----
---------S-SSS-SS-SS-S-----------------S----------------------------------------
---------------------------------------------------------------S-SSSS-----------
---------------------------SS-------------------------------------------------SS
--------------------------------------------------------------------S-----------
---------------------SS--SS-SSSS------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S---S------
-------S-------------------S----------S-----------------------------------------
--------------S-------------------------------------------S----------------S----
-----S---------------------------------------------------------------S----------
------------------------S-------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------------------------------------------S---------------S--------
-S------------------------------------------------------------------------------
------------------------S----S------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------SS---------------------------------------------------S------------S------
--------------------------------------------------------------------------------
------------S------------S--S-----------------------------S-------------S-------
----------S--------------------SS---SS------------------------S----S---------S--
--------------------------------------------------S------------S----------------
-----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
---S-SSS----------S--------------------------------------------S----------------
---------------------S--------S-------------------------------------------------
--------------------------------------------------------------------------------
---------S-------------SS---------------------------------------S---------------
----------------------------------------------SS-----S-----S-S-----------S-S----
---------------------------------------------------------------------S--------S-
--------------------------------------------------------------------------------
------------------------------------------------------SSSSSSS
>forward_314
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ACCTCCATCCGAACAACGTC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------
>reverse_1475
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ACAGTACGAAGACGGGTTCG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------
>forward_807
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GCGGTTGCTGTTC
TGATTCG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_2825
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------AGCCGTCCCCTTTGACATG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>forward_2726
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CCAGGCAGCTTAGG
TGTAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_4288
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-----------------------------------------------ATATCCTCGAGCACTGTGGC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
