>input_sequence_40130
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----------------------------------------------ATGTGAGTTTCTTGACGCACGGCCGCCGTGCTCT
TCCTTTTCCTTCTTGGTTCTTGATTCGCCGGCCATTGCTAGCTTAGCTTAGCTTAG--TCTGGTGTGCGCGCGGGCGCGG
GTACT----GATGGC---GTGTGCGTGATGCTGCTGCGTAGGAGCGAGCCGGGCAACGAGCTGGACGAGCTGCTCTGGGA
TAACGGACCGGCGCTCCGGCGGGCGGCGTCGCCCTTCCCGCCCTTCTCCTGCAGCCCCGCCGGCACTATGAAGGCGCAGG
AGCTCGCCAAGCACCCCGCGTCGGCGACGGCGATGGCGCAGGGGCACGACGACGACGCCGTGCCGTGGTTGCAACATTAC
CCCATCATCGGCGTGG---ACGACGGCGGCGGCGGCGATACGGCCCCGCTGCCCCAGGACTACTTCTCCACCTTGTTTCC
CGGGTTCTCCGACCTCCCCGCTGCGGTGGCGGGCAGAGATGCCGGAGCGCCATCGACGTCTCACGCAGCGGTCGTCGTGC
CGCCGCTGCCGGAGCCACCTGTGCTCCCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCTCGGTCCACCGGC
GAGGGCGTCATGAACTTCTCCTTCTTCTCGAGGCCCCTGCAGCGCTCGCTGCCGCAGGCCAGCGTGAGACCGTCTGCCGC
GGGAAGCAAGTCCGTCGAGTCCACGCTGCTGCAGACCAACAGGCTAAGAAGCACCCCGCTGTTCTCGGAGCAGAGGACGG
CGTGGCTGCAGCCGCCCAGGGAGTCGCCCGCCACGGTGGCCGCGCCTCGTCCTCTGGCACCGCCAGTGCCTGTCCAGCAT
GCCGCAGAACCGGCAGCGGCGTTATCCCAGAGATTGCAACCGGAAGCGAGGGCTGCGGCGTTACCACCGAGATTGCAACC
GGAACCGAGGGCTGCGGCGTTACCCCAGAGATTGCAATCGGAGGCGAGGGCTTCCGAGATGCCACCGCCGCCCGCAACAG
CGACGACCTCGTCTGTCTGCTCTGACAACGGCGAGCGGAGCCAGCTGAAGAGGAGCAGCCACCAGACTCTGGAGTGGTCG
GTCAGTCAGGACGACGAGGTGAGCACCGGAC----------ACATACATGGTTAACACCGCGAACGCAGTACTGTTCTTC
TTGGT---TCAAAATCTCAAACGCAATCTGCCTGCAGGACCTTGACGACGAGGCCGGCGGGCTGAGAAGGTCGGCGGCGA
GGAGCACCAAGCGCGGCCGCACCGCCGAAGTGCACAACATGTCGGAGAGGGTAGGTCCTAGTAGCGATCCCGAATGCACA
AAATAAATACACACC----GTACACCGAAGTGGCATTCTTCCGGTTGCTAAATTGGTACTCCTCCTTGGAAGATAGCTAA
ATTGCTGTATGAAATTGCTGTTGCAGAGGAGAAGGGATCGAATCAACGAGAAGATGCGCGCCCTGCAAGAACTCATCCCC
AACTGCAACAAGGTACACGATCCAT-CAACCTTGGCAAGAAAGCTCAAAAATACTTTGACAA-GAGCACAAAGTAACATC
CAATGTTTG-TGGTGATGAAGATTGACAAGGCGTCGATGCTGGAGGAGGCCATCGAGTACCTCAAGACCCTGCAGCTCCA
GGTGCAGATGATGTCGACGATGGGGACGGCCGGGCTGTGCATGCCGCCGATGATGGCAATGCAGCACATGCAGATGCCGC
CCATGGCGCACTTCCACCACCACCACCTCGGCGCCATGGGGTACGGCATGGGCCCCTTCGACCCGCGCCTCGTCGCAGCC
GCCGGCGCCGCGCAGTTCCCTTACCAGATGATGCCCGGCGCGCCCATGTTCGGCGGCCACGCGATGCCTCCCCCGCCACC
GTTCCACCAGGCGGCGGTGGCGGGCGCTCACATGGCTGCCGGCCCCGTCAGCAACGACGCCGCCACGGCAGCGCAGGCCG
AGCACGAGCAGACACCCGGCGACCATCCGCAGGTCCCACGAGCAATGTAG------------------------------
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-------------------------------------------
>chr1A_1_TraesCS1A01G083000
GATTCGCCCCACATATTGGGTGGGAGATGCCAGCAAATCCAATAGGTTGGGTTGACTTTCTAGGTTGGTTTGGGTTGACT
TTTCTAGGTCCAGCGCTTACTGGGTTGTCCGCTTAAACATTTGAGAAGGGTTTAATGTGTTCGGTCCTACCGGACTTCTC
ACTGCACCAAAGGACAACGAATCGTGCACCATCACCGCCGTGGCCACCGGACTACAGCCGTTGAAAACGCCGAG--GGGA
CTGCCCGACGTTGTCCCGGAGAAGTTGGCGGTGGTGCCGCCCGTCGTAGGTACAGAGCCGGACGCAGGCCTCGACATCCG
GACACATGCATGCCACGAGAGCACATACTACATGCACGTCGAGCAACTAGC--GTGTGTTGGTGGCGGACCGGTGGGAGG
AAACGCGGGAGTGTCCGCAAATGTTACCCGCCCTCGCGTGAAAGCTGCGGCGAGACCCTGGACACAACCGTGCAAGAGAA
AGTTTGGCTGGTAACCGACGG-CCGGCCACGAGGATAGGCGGTAGGCCAGCAGCCACCGGATCGAGATCACTCGGGTGAT
GGGCAGACAGTGCGGCACCAAACAGGTCGTGGTCTAGCGGCACGAGCTTCCGCCACCCCTCTCGATCGCCGTCCCGGCTA
TATATTCGACGGCTCGGCGGGCGCCCCCCACTTCGTCCTCCCGCTGCCCATCCCCCACCCGTGCCGCATCCGTTGGCATC
AATGGCGACGCCTCGTTAGGTGGCGCGTCGCTCTTCCTTAACTGCTCCC-GCTCACACACGCGCATCGGGTTCAGACGGC
TCTGCGTCGAGTTGGTGCGTGCGCTACTCCTCCTCCACCCCTCCTTCCCTGCAGCTGCTGCAGCTCCGCTTGTGACTCGT
GACGGGAAGAGGGGAGATAAAATAATACCCCGCCAACCGCGGCGAGGCGTCGGCCGAGCTACACCTGTCGCCGCAGGAGC
TGGAAGACCTCCGTCGTTTATATATCCACGCCTGCCGCTGCCGGGGATGTGAGTTTCTTGACGCACGGCCGCCGTGCTCT
TCCTTTTCCTTCTTGGTTCTTGATTCGCCGGCCATTGCTAGCTTAGCTTAGCTTAG--TCTGGTGTGCGCGCGGGCGCGG
GTACT----GATGGC---GTGTGCGTGATGCTGCTGCGTAGGAGCGAGCCGGGCAACGAGCTGGACGAGCTGCTCTGGGA
TAACGGACCGGCGCTCCGGCGGGCGGCGTCGCCCTTCCCGCCCTTCTCCTGCAGCCCCGCCGGCACTATGAAGGCGCAGG
AGCTCGCCAAGCACCCCGCGTCGGCGACGGCGATGGCGCAGGGGCACGACGACGACGCCGTGCCGTGGTTGCAACATTAC
CCCATCATCGGCGTGG---ACGACGGCGGCGGCGGCGATACGGCCCCGCTGCCCCAGGACTACTTCTCCACCTTGTTTCC
CGGGTTCTCCGACCTCCCCGCTGCGGTGGCGGGCAGAGATGCCGGAGCGCCATCGACGTCTCACGCAGCGGTCGTCGTGC
CGCCGCTGCCGGAGCCACCTGTGCTCCCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCTCGGTCCACCGGC
GAGGGCGTCATGAACTTCTCCTTCTTCTCGAGGCCCCTGCAGCGCTCGCTGCCGCAGGCCAGCGTGAGACCGTCTGCCGC
GGGAAGCAAGTCCGTCGAGTCCACGCTGCTGCAGACCAACAGGCTAAGAAGCACCCCGCTGTTCTCGGAGCAGAGGACGG
CGTGGCTGCAGCCGCCCAGGGAGTCGCCCGCCACGGTGGCCGCGCCTCGTCCTCTGGCACCGCCAGTGCCTGTCCAGCAT
GCCGCAGAACCGGCAGCGGCGTTATCCCAGAGATTGCAACCGGAAGCGAGGGCTGCGGCGTTACCACCGAGATTGCAACC
GGAACCGAGGGCTGCGGCGTTACCCCAGAGATTGCAATCGGAGGCGAGGGCTTCCGAGATGCCACCGCCGCCCGCAACAG
CGACGACCTCGTCTGTCTGCTCTGACAACGGCGAGCGGAGCCAGCTGAAGAGGAGCAGCCACCAGACTCTGGAGTGGTCG
GTCAGTCAGGACGACGAGGTGAGCACCGGAC----------ACATACATGGTTAACACCGCGAACGCAGTACTGTTCTTC
TTGGT---TCAAAATCTCAAACGCAATCTGCCTGCAGGACCTTGACGACGAGGCCGGCGGGCTGAGAAGGTCGGCGGCGA
GGAGCACCAAGCGCGGCCGCACCGCCGAAGTGCACAACATGTCGGAGAGGGTAGGTCCTAGTAGCGATCCCGAATGCACA
AAATAAATACACACC----GTACACCGAAGTGGCATTCTTCCGGTTGCTAAATTGGTACTCCTCCTTGGAAGATAGCTAA
ATTGCTGTATGAAATTGCTGTTGCAGAGGAGAAGGGATCGAATCAACGAGAAGATGCGCGCCCTGCAAGAACTCATCCCC
AACTGCAACAAGGTACACGATCCAT-CAACCTTGGCAAGAAAGCTCAAAAATACTTTGACAA-GAGCACAAAGTAACATC
CAATGTTTG-TGGTGATGAAGATTGACAAGGCGTCGATGCTGGAGGAGGCCATCGAGTACCTCAAGACCCTGCAGCTCCA
GGTGCAGATGATGTCGACGATGGGGACGGCCGGGCTGTGCATGCCGCCGATGATGGCAATGCAGCACATGCAGATGCCGC
CCATGGCGCACTTCCACCACCACCACCTCGGCGCCATGGGGTACGGCATGGGCCCCTTCGACCCGCGCCTCGTCGCAGCC
GCCGGCGCCGCGCAGTTCCCTTACCAGATGATGCCCGGCGCGCCCATGTTCGGCGGCCACGCGATGCCTCCCCCGCCACC
GTTCCACCAGGCGGCGGTGGCGGGCGCTCACATGGCTGCCGGCCCCGTCAGCAACGACGCCGCCACGGCAGCGCAGGCCG
AGCACGAGCAGACACCCGGCGACCATCCGCAGGTCCCACGAGCAATGTAGCCTAGCTCCGACAGCGGCGGA---------
--CTCTGTAGCAGGCTAGCGGCGCACCCAGCAAGGCTCGGTAACTCCGAGCAGGGCTGCGGCAAAACGAAGCTGTAAAAT
CTTTGTGAGACTGTAAAATGGCTCACTGCTCCGGCATCTTCTCCGTGTCAGAGGATAGGCCGGGTACAGTGTCTGCTGGG
GAGGATCAATGGATCAGGATCGCTTCTGCTTCCCGCTGCAGTATTCAATCCTGACATGTCCTACCCTGTTTAAAGCTGTG
CCCGGTGCCCGCCGCTCATGATGCCGCGGA-----CGGACAAGAGTCAATCTGAAGT---------ACTGTTGGCGCACA
TGCATCATGGCGCCGATGGCAGCTTGAGCTGGCACGGGCTCGGGCAGTCCATGCCTTAGAGCATCCCTAGTGGCTCGTCT
AAATTTGATAGTCTATATTTACATATACAC--AATGGTGTAAAAAGA--TTTTCTTTTAGACAACCTAAGTTTTTCAGCG
GATTGTCTACATACATGATGTC--TATATTCTCTTTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCTTATGTTGGTCATTTCTGAGTTGTTCTCATTTAT-TTTTTCCATCCGCAAAACATATAAAGGAGAAAATAAACCAGCC
GCCAAATTATTTTATGTTCAACACTAGCAACACCCTATATAATTTACGAGAAATAAACAATAGCAACAGGTTCAACCCTG
ATGAGGCGGCGGTCCAGGCGCAACGACCTCCGTGTCCAGCGCCGGCGCGGCCGCTTCCCTGCCGACATCCTCCAATTGCT
CCGAATTGGTGAATGGCTGAGCTCATGAGCCAACATTTTTGGTTTAGACGTTGTGGCTTGGTTGTCCAAATGTGGACGAC
GGGTAGCTAGTTTAGACATTGTCTAAATTTTAAACGATGCAATAGACAAGCCACTGAAAACGTTTTTCGGCATGTGGT-A
GTCTAAATTTGATATAAACCATCATTTGCACCTATAGATGCTC
>chr1D_68
-------------------------------------------------------------------GTTTGGGTTGAC-
TTTCTAGGTCCAACGCTGACTGGGTTGTCCGTCCGAACATTTGAAAAGGGTTTGAGGTGTCCAGCCGTAACGGACTTCTC
ACTGCATCAATGGACCACGAATCGTGCACCATCA---------CCACCGGACTACAGCCGTTGAAAACGCCGAGAGGGGA
CTGCCCGACGTTGTCCCGGAGAAGTTGGCGGTGGTGCCGCCCGTCGTAGGTAGAGAGCCGGACGCAGGCCTTGACAGCCG
GACACATGCATGCCACGAGAGCACATAC---ATGCATGTCGAGCTACTAGTGTGTGTGTTGGTGGTGGACCGGTGGGAGG
AAACGCGGGAGTGTCCGCAAATGTTACCTGTCCTCGCGTGAAAGCTGCGGGTGAGACCCTAG-----CCGTGCAAGAGAA
AGTTTGGCTGGTAACCGACGG-C-GGCCACGAGGATAGGCAGTAGGCCAGTAGCCACCGGATCGAGATCGCTGGGGTGAT
GGGCAGACAGTGCGGCAACAAACAGGTCGTGGTCTAGCGGCACGAGCTCCC----CCCCTCTCGATCGCCGTCCCGGCTA
TATATTCGACGGCTCGGCGGGCGCCCCCCACTTCGTCCTCCCGCTGCCCATCCCCCACCCGTGCCGCGTCCCTTGGCATC
AATGGCGACGCCTCGTTAGGTGGCGCGTCGCTCTTCCTTAACTGCTCCCCCCTCACACACGCGCATCGTATTCAGACGGC
TCTGCTTCGAGTTGGTGCGCTACTC-CTCCTCCTCCACCCCTCCTTCCCTGCAGCTGC---AGCTCCGCTCGTGACCCGT
GACGGGAAGAGGGGAGATAAAATAATACTCCGCCAACCGCGGCGAGGCGTCGGCCGGGCTACACCTGTCGCCGCAGGAGC
TGGAAGATCTCCGTCGTTTATATATCCACACCG------GCCGGGGATGTGAGTTTCTTGACGGCTGA---CCGTGTTCT
TCCTTGTC-TTCTTGGTTCTTTATTCGCCGGCCATTGCTAGCTTAGCTTGT-------TCTGGTGTGCGCGCGGGCGCGG
GGTACTGACGATGGC---GTGTGCGTGATGCTGCTGCGCAGGAGTGAGCCGGGCAACGAGTTGGAGGAGCTGCTCTGGGA
TAACGGACCGGCGCTCCGGCGGACGGCATCGCCCTTCCCGCCCTTCTCCTGCAGCGCCGCCGGCACTATGAAGGCGCAGG
AGCTCGCCAAGCACCCCGCGTCGGCGACGGCGATGGCGCACGGACACGACGACGACGCCGTGCCGTGGTTGCAACATTAC
CCCATCATCGGCGTGGACGACGACGGCAGCGGCGGCGACACGGCCCCGCTGCCCCAGGAGTACTTCTCCACCTTGTTTCC
CGGGTTCTCCGACCTCCCCGCTGCGGTGGCGAGCAGAGATGCCGGAGCGCCATCAACGTCTCACGCAGCGGTCGTCGTGC
CGCCGCTGCCGGAGCCACCTGCGCCCCCCAAGCAGCAGCAGC------------------CGCCGCCTCGGACCACCGGC
GAGGGCGTCATGAACTTCTCCTTCTTCTCGAGGCCCCTGCAGCGCTCGCTGCCGCAGGCCAGCGTGAGACCGTCTGCCGC
GGGGAACAAGTCCGTCGAGTCGATGCTGCTGCAGACCAACAGGCTAAGAAGCACCCCTCTGTTCTCGGAGCAGAGGACGG
CGTGGCTGCATCCGCCCAAGGAGTCACCCGCCACGGCGTCCGCATCCCGTCCTCCGGCACCGCCGGTGCCTGTCCGGCAT
GCTGCAGAACCGGCTGCGGCGTTACCCCAGAGACTGCAACCGGAAGCCAGGGCTGCGGCGTTACCACCGAGATTGCAACC
GGAAGTGAGGGCTGTGGCGTTACCCCAGAGATTGCAATCGGAAGCGAGGGCTTCCGAGATGCCACCGCCGCCCGCAACAG
CGACGACCTCGTCTGTCTGCTCCGACAACGGTGAGCGGAGCCAGCTGAAGAGGAGCAGCCACCAGACTCTGGAGTGGTCG
GTCAGTCAGGACGACGAGGTGAGCACTGGAC----------A-------------CACCACGAACGCAGTACTGTGCTTC
TTGTTTCATGAAAATCTCAAACGCAATCTGCCTGCAGGATCTCGACGACGAGGCCGGCGGGCTGAGAAGGTCGGCGGCGA
GGAGCACCAAGCGCGGCCGCACCGCCGAAGTGCACAACATGTCGGAGAGGGTAGGTCCTAGTAGCGATCCCGAATGCACA
AAATAAATGTACACC----GTACACCGAAGTGGCATTCTTCCGGTTGCTAAATTGGTATTCCTTCTTGGAAGATAGCTAA
AATGTTGTATGAAATTGCTGTTGCAGAGGAGAAGGGACCGAATCAACGAGAAGATGCGCGCCCTGCAAGAACTCATCCCC
AACTGCAACAAGGTACACGACACGT-CAACCCTCGCAAGAAACCTCGAAAAATCTTTGACAA-GAGCACAAAGTGACATC
CAATGTTTTATGGTGATGAAGATCGACAAGGCGTCGATGCTGGAGGAGGCCATCGAGTACCTCAAGACCCTGCAGCTCCA
GGTCCAGATGATGTCGACGATGGGGACGGCCGGGCTGTGCATGCCGCCGATGATGGCAATGCAGCACATGCAGATGCCGC
CCATGGCGCACTTCCACCACCACCACCTCGGCGCCATGGGGTTCGGCATGGGCGCCTTCGACCCGCGCCTCGTCGCCGCC
GCCGGCGCCGCGCAGTTCCCTTACCCGATGATGCCCGGCGCGCCCATGTTCGGCGCCCACGCGATGCCTCCCCCGCCACC
GTTCCACCAGGCGGCGGTGGCGGGCGCTCACATGGCTGCCGGCCCGGTCACCAACGACGCCGCCACCGCAGCGCAGGCCG
AGCACGAGCAGACACCGGGCGACCATCCGCAGGTCCCACGAGCAATGTAGCCTAGCTCCAACAGCGGCGGCGGTCGATCT
GGCTCTGTAGCAGGCTAGCGGCGCACGCAGCAAGGCTCGGTAACTCCGAGCCGGGCTGCGGCAAAACGAAGCAGTAAAAT
CTTTGTGAGACTGTAAAATGGTTCACTGCTCCGGCATCTTCTCCGTGTCAGAGGATAGGCCGGGTACAGTGTCTGCTGGG
GAGGATCAATGGATCAGGATCGCTTCTGCTTCCCGCTGCAGTACTCAATCCTGACATGTCTTACCGCCGTTTTTAAAGCT
TC----GTCCGCCGCTCATGATACTCATCATGCCGCGGGCAGGAGTCAATCTAAAGTATAGCGAGCACTGTTCGTGCACA
TGCATCATGGCACTGGTGGCAGCTTGAGCTGGCACGGGCTCGGGCAGTCCAT----------------------------
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>chr1B_474
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-----------------------------------------------------------------------------GAA
AGTTTGGCTGGTAACCGACGGCC-GGCCACGAGGATAGGCAGTAGGCCAGTAGCCACCGGATCGAGATCGCTGGGGTGAT
GGGCAGACAGTGCGGCAACAAATAGGTCGTGGTCTAGCGGCACGAGCTTCC----CCCCTCTCGATCGTCGTCCCGGCTA
TATATTCGACGGCTCGGCGGGCGCCCCCCACTTCGACCTCCCGCTGCCCATCCCCCACCCGTGCCGCGTCCGTTGGCATC
AATGGCGACGCCTCGTTAGGTGGCGCGTCGCTCTTCCTTAACTGCTCCC-CCTCACACACGCGCATCGGATTCAGACGGC
TCTGCTTCGAGTTGGTGCGCTACTC-CTCC------ACCCCTCCTTCCCTGCAGCTGC---AGCTCCGCTCGTGACTCGT
GACGGGAAGAGGGAAGATAAAATAATACTCTGCCAACCGCGGCGAGGCGTCGGCCGTGCTACACCTGTCGCCGCAAGAGC
TGGAAGATCTCCGTCGTTTATATATCGACACCTGCCGGTGCCGGGGATGTGAGTTTCTTGACGCACGGCCGCCGTGCTCT
TCCTTTTC-TTCTTGGTTCTTGATTCGCCGGCCACTGCTAGCTTAGCTTAGTCTGGTCTCTGGTGTGCGCGCGGGCGCGG
GTACT----GACGATGATGTGTGCGTGATGCTGCTGCGCAGGAGTGAGCCGGGCAACGAGCTGGAGGAGCTGCTCTGGGA
TAACGGACCGGCGCTCCGGCGGGCGGCATCGCCCTTCCCTCCCTTCTCCTGCAGCGCCGCCGGCACTATGAAGGCGCAGG
AGCTCGCCAAGCACCCCGCGTCGGCGACGGCGATGGCGCAGGGACACGACGACGACGCCGTGCCGTGGTTGCAACATTAC
CCCATCATCGGCGTGGACGACGACGGCAGCGGCGGCGACACGGCCCCGCTGCCCCAGGACTACTTCTCCACCTTGTTTCC
CGGTTTCTCCGAGCTCCCCGCTGCGGTGGCGAGCAGAGATGCCGGAGCGCCATCGACGTCTCACGCAGCGGTCGTCGTGC
CGCCGCTGCCGGAGCCACCTGCGCCCCCCAAGCAGCAGCAGCAGG------------------CGCCTCGATCCACCGGC
GAGGGCGTCATGAACTTCTCCTTCTTCTCGAGGCCCCTGCAGCGCTCGCTGCCGCAGGCCAGCACGAGAACGTCTGCCGC
GGGGAGCAAGTCCGTCGAGTCGACGCTGCTGCAGACCAACAGGCTAAGAAGCACCCCGCTGTTCTCGGAGCAGAGGACGG
CGTGGCTGCAGCCGCCCAAGGAGTCGCCCGCCGCGGTATCCGCATCCCGTCCTCCGGCACCGCCGGTGCCTGTCCGGCAT
GCTGCAGAACCGGCTGCGGCGTTACCCCAGAGACTGCAACCGGAAGCGAGGGCTGCGGCGTTACCACCGAGATTGCAACC
GGAAGTGAGGGCTGCGGCGTTACCCCAGAGATTACAATCGGAGGCGAGGGCTTCCGAGATGCCACCGCCGCCCGCAACAG
CGACGACCTCGTCTGTCTGCTCCGACAACGGTGAGCGGAGCCAGCTGAAGAGGAGCAGCCACCAGACTCTGGAGTGGTCC
GTCAGTCAGGACGACGAGGTAAAGCGCTGGACACATGGTTAA-------------CACCACGAACGCAGTATTGTGCTTC
TTGTTTCATCAAAATCTCAAACGCAATCTGCCTGCAGGATCTCGACGACGAGGCCGGCGGGCTGAGAAGGTCGGCGGCGA
GGAGCACCAAGCGCGGCCGCACCGCGGAAGTGCACAACATGTCGGAGAGGGTATGTACTAGTAGCGATCCCGAATGCACA
AAATAAATAAATGTACACAGTACACCGAAGTGGCATTCTTCCGGTTGCTAAATTGGTATTCCTTCTTGGAAGATAGCTAA
ATTGGTGTATGAAATTGCTA-TGCAGAGGAGAAGGGATCGAATCAACGAGAAGATGCGCGCCCTGCAAGAACTCATCCCC
AACTGCAACAAGGTACACGACACACCCAACCCTCGCAAGAAAACTCGAAAAATCTTTGACAATGAGCACAGCGTGACATC
CAATGTTTG-TGGTGATGAAGATTGACAAGGCGTCGATGCTGGAGGAGGCCATCGAGTACCTCAAGACCCTGCAGCTCCA
GGTCCAGATGATGTCGACGATGGGGACGGCCGGGCTGTGCATGCCGCCGATGATGGCAATGCAGCACATGCAGATGCCGC
CCATGGCGCACTTCCACCACCACCACCTCGGCGCCATGGGGTTCGGCATGGGCCCCTTCGACCCGCGCCTCGTCGCCGCC
GCCGGCGCCGCGCAGTTCCCTTACCCGATGATGCCCGGCGCGCCCATTTTCGGCGGCCACGCGATGCCTCCCCCGCCACC
GTTCCACCAGGCGGCGGTGGCGGGCGCTCACATGGCTCCCGGCCCCGTCACCAACGATGCCGCCACCGCAGCGCAGGCCG
AGCACGAGCAGACACCGGGCGACCATCCGCAGGTCCCACGAACAATGTAAACTAGCTCCAACAGCGGCGGAGGTCGACCT
GGCTCTGTAGCAGGCTAGGGGCGCACGCAGCAAGGCTCGGTAACTCCGAGCAGGGCTGCGGCAAAACGTAGCTGTAAAAT
CTTTGTGAAACTGTAAAATGGTTCACTGCTCCGGCATCTTCTCCGTGTCAGAGGATAGGCCAGGTACAGTGTCTGCTGGA
GAGGATCAATGGATCAGGATCGCTTCTGCTTCCCGCTGCAATACACAATCCTGACATGTCCTACCACCATTTTTAAAGCT
C----TGTCCGCCGCTCATGATGCTCATCATGCTGCGGGCAGGAGTCAATCTGAAGTATAGCGAGCACTGTTCGTGCACA
TGCATCATGGCGCCGGTGGCAGCTTGAGCTGGCACGAGCTCGGGCAGTCCATGCCTTA----------------------
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>chr1A_3351
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-----------------------------------------------------CCTTAGAGCATCCCTAGTGGCTTGTCT
AAATTTGATAGTTTATATCTACATATACACA--ATGGTGTAATTTTTCTTTTTCTTTTAGACAACCTAAGTTTTCCAGCG
GATTGTCTATATACACGATGTC--TATATTCTCTTTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCTTATGTTGGTCATTTCTGAGTTGTTCTCATTTAT-TTTTTTCATCCGCAAGACATATAAAGGAGAAAATAAACCAGCC
GCGAAATTATTTTAGGTTCAACACTAGCAACACCCTATATAATTTACGAGAAATAAACAATAGCAACAGGTTCAACCCTG
ATGAGGCGGCGGTCCAGGCGCAACGACCTCCGTGTCCAGCGCCGGCGCGGCCGCCTCCCTGCCGACGTCCTCCAATTGCT
CCGAATTGGTGAATGGCTGAGCTCACGAGCCAACATTTTTGGTTTAGACATTGTGGCTTGCTTGTCCAAATGTGGACGAC
GGGTAGCTAGTTTGGACATTGTCTAAATTTTAGACGACGCAATAGACAAGCCACTAAAGACGTTTTTTGGCATGTGGT-A
GTCTAAATTTGATATAGACCACCATTTGCAC------------
>chr3A_3351
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-----------------------------------------------------CCTGAGAGCATCCCTAGTGGCTTGTCT
-AATTTGATAGTCTATATCTACATATACACACAATGGTGTAAAAAGA--TTTTCTTTTAGACAACCTAAGTTTTCCAGTG
GATTGTCTATATACATGATGTC--TATATTTTCTTTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCATATGTTGGTCATTTATGAGTTGTTCTCATTTAT-TTTTTTCATCCGCAAGACATATAAAGGAGAAAATAAACCAGCC
GCAAAATTATTTTAGGTTCAACACTAGCAACACCCTATATAATTTACGAGAAATAAACAATAGCAGCAGGTTCAACCCTG
ATGAGGCGACGGTCCAGGCGCAACGACCTCCGTGTCCAGCGCTGGCGCAGCCGCCTCCCTGCCGACGTCCTCCAATTGCT
CCGAATTGGTGAATGGCTGAGCTCATGAGCCAACATTTTTGGTTTAGACATTGTGGCTTGGTTGTCCAAATGTGAACGAC
GGGTAGCTAGTTTGGACATTGTCTAAATTTTAGATGACGCAATAGACAAGCCATTGAAGACATTTTTTGGCATGTGGT-A
GTCTAAATTTGGTATAGACCACCATTTGCAC------------
>chr7A_3352
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------------------------------------------------------CTAAGAGCAT-CCTAGTGGCTTGTCT
AAATTTAATAGTCTATATCTACATATACAC--AATGGTGTAAAAAGA--TTTTCTTTTAGACAACCTAAGTTTTCCAGCG
GATTGTCTATATATATGATGTC--TATATTCTCTTTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCTTATGTTAGTCATTTCTGAGTTGTTTTCATTTAT-TTTTTTCATCCGCAAGACATATAAAGGAGAAAATAAACCAGCC
GCGAAATTATTTTAGGTTCAACACTAGCAACACCCTATATAATTTACGAGAAATAAACAATAGCAACAGGTTCAACCCTG
ATGAGACGACGGTCCAGGCGCAACGACCTCCGTGTCCAGCGCCGGCGCGGCCGCCTCCCTGCCGACGTCCTCCAATTGCT
CCGAATTGGTGAATGGCTGAGCTCATGAGCCAACATTTTTGGTTTAGACATTGTGGCTTGGTTGTCCAAATGTGGACGAC
GGGTAGTTAGTTTGGACATTGTCTAAATTTTAGATGACGCAATAGACAAGTCACTGAAGACGTTTTTTGACATGTGGT-A
GTCTAAATTTGGTATAGACCACCATTTGCAC------------
>chr1A_3353
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-------------------------------------------------------TTAGAGCATCCCTAGTGGCTTGTCT
AAATTTGATAGTCTATATCTACATATACAC--AATAGTGTAA-TTT--TTTTTCTTTTAGACAACCTAAGTTTTCCAGCG
GATTGTCTATATACATGATGTC--TATATTCTCTTTCATATATTCTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCTTATGTTGGTCATTTCTGAGTTGTTCTCATTTAT-TTTTTT-ATCCGCAAGACATATAAAGGAGAAAATAAAACAGCT
GCGAAATTATTTTAGGTTCAACACTAGCAACACCCTATATAATTTACGAGAAATAAACAATAGCAACAGGTTCAACCCTG
ATGAGGCGACGGTCCAGGCGCAACGACCTCCGTGTCCAGCGCGGGCGCGGCCGCCTCCCTGCCGACGTCCTCCAATTGCT
CCGAATTGGTGAATGGCTAAGCTCATGAGCCAACATTTTTGGTTTAGACATTGTGGCTTGGTTGTCCAAATGTGGACGAC
GGGTAGCTAGTTTGGACATTGTCTAAATTTTAGATGACGCAATAGACAAGCCAATGAAGACTTTTTTTGGCATGTGAT-A
GTCTAAATTTGGTATAGACCACCATTTGCAC------------
>chr1A_3355
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---------------------------------------------------------AGAGCATCCCTAGTGGCTTGTCT
AAATTTGATAGTTTATATCTACATATACAC--AATGGTGTAAAAAGA--TTTTCTTTTAGACAACCTAAGTTTTCCAGCG
GATTGTCTATATACATGATGTC--TATATTCTCTTTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCTTATGTTGGTCATTTCTGAGTTGTTCTCATTTAT-TTTTTTCATCCGCAAGACATATAAAAGAGAAAATAAACCAGCC
GCGAAATTATTTTAGGTTCAACACTAGCAGCACCCTATATAATTTACGAGAAATAAACAATAGCAACAGGTTCAACCCTG
ATGAGGCGGCGGTCCAGGCGCAACGACCTCCGTGTCCAGCGCCGGCGCGGCCGCCTCCCTGCCGACGTCCTCCAATTGCT
CCGAATTGGTGAATGGCTGAGCTCATGAGCCAACATTTTTGGTTTAGACATTGTGGCTTGGTTGTCCAAATGTGGACGAC
GGGTAGCTAGTTTGGACATTGTCTAAATTTTAGACGACGCAATAGACAAGCCACTGAAGACGTTTTTTGGCATGTGGT-A
GTCTAAATTTGGTATAGACCATCATTTGCAC------------
>chr5A_3355
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---------------------------------------------------------AGAGCATCCCTAGTGGCTTGTCT
AAATTTAATAGTCTATATCTACATATACAC--AATGGTGTATTTTT--TTTTTCTTTTAGACAACCTAAGTTTTCCAGCG
GATTGTCTATATACATGATGTCTATATATTCTCTTTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCTTATGTTGGTCATTTCTGAGTTGTTCTCATTTAT-TTATTTCATCCGCAAGACATATAAAGGAGAAAATAAACCAGCC
GTGAAATTATTTTAGGTTCAACACTAGCAACACCCTATATAATTTACGAGAAATAAACAATAGCAACAGGTTCAACCCTG
ATGAGGCGACGGTCCAGGCGCAACGACCTCCGTGTCCAGCGCCGGCGCGGCCGCCTCCCTGCCGACGTCCTCCAATTGCT
CCGAGTTGGTGAATGGCTGAGCTCATGAACCAACATTTTTGGTTTAGACATTGTGGCTTGGTTGTCCAAATGTGGACGAC
GGGTAGCTAGTTTGGACATTGTCTAAATTTTAGATGACGCAATAGACAAGCCACTGAAGACGTTTTTTGGCATGT-GT-A
GTCTAAATTTGGTATAGACCACCATTTACAC------------
>chr5A_3355
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---------------------------------------------------------AGAGCATCCCTAGTGGCTTGTCT
AAATTTGATAGTCTATATCTACATATACAC--AATGGTGTAAAAAGA--TTTTCTTTTAGACAACCTAAGTTTTCCAGCG
GATTGTCTATATACATGATGTC----TATTCTCTTTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCTTATGTTGGTCATTTCTGAGTT---CTCATTTAT-TTTTTTCATCCGCAAGACATATAAAGGAGAAAATAAACCAGCC
ATGAAATTATTTTAGGTTCAACACTAGGAACACCCTATATAATTTACGAGAAATAAACAATAGCAACAGGTTCAACCCTG
ATGAGGCGGTCGTCCAGACGCAACGACCTCTGTGTCCAGCGCCGGCGCAGCCGCCTCCCTGCCGATGTCCTCCAATTGCT
CTGTATTGGTGAATGGCTGAGCTCATGAGCCAATATTTTTGGTTTAGACATTATGGCTTGGTTGTTCAAATGTGGACGAC
GGGTAGCTAGTTTGAACATTGTCTAAATTTTAGACGACGCAATAGACAAGCCACTGAAGATGTTTCCTGGTATGTGAT-A
GTCTAAATTTGGTATAGACCACCATTTGCAC------------
>chr5D_3355
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---------------------------------------------------------AGAGCATCTCTAGTGGCTTGTCT
AAATTTGATAGTATATATCTACATATACAC--AATGGTGTAGAAAGA--TTTTCTTTTAGACAACCTAAGTTTTCCAGCG
GATTGTTTATATACATGATGTC--TATATTCTCTCTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTCTAAAAA
TCTTATGTTGGTCATTTCTGAGTTGTTCTCATTTAT-TTATTCCATCCGCAAGACATACAAAGGAGAAAATAAACCAGCC
GCTAAATTATTTTAGGTTCAGCACTAGCAACACCCTACATAATTTACGAGAAATAAACAATAGCAACATGTTCAACCCTG
ATGAGGCGGCGGTCCAGGCGCAACAGCTTCCGTGACCAGCGCCGGCGTGGCCGCCTCCCTGCCAACGTCCCCCAATTGCT
CCAAATTGATGCATGGACGAGCTCATGAGCCAGCATTTTTGGTTTGGACATTGTGGCTTGGTTGTCCAAATGTGAACGAC
TGGTAGCTAGTTTGGACATTGTCTAAATTTCAGACGACGCAATAGACAAGCCACTTAAGACGTTTTGTGGTATGTGGTAA
GTCTAAATTTGGCGTAGACCACCATTTGCAC------------
>chr7A_3390
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------------CTATATCTACATATACAC--AATGGTGTAAAAAGA--TTTTCTTTTAGACAACCTAAGTTTTCCAGCG
GATTGTCTATATACATGATGTC--TATATTCTCTTTCATATATTTTAATAGTATCTTATAGCAGCTATATTTTTTAAAAA
TCTTATGTTGGTCATTTCTGAGTTGTTCTCATTTATTTTTTTTCATCCGCAAGACATATAAAGGAGAAAATAAACCAGCC
GCGAAATTATTTTAGGTTCAACACTAGCAACACCCTATATAATTTACGAGAAATAAACAATAGCAACAGGTTCAACCTTG
ATGAGGCGGCGGTCCAGGCGCAACGACCTCCGTGTCCAGCGCCGGCGCGACCGCCTCCCTGCCGACGTCCTCCAATTGCT
CCGAATTGGTGAATGGCTGAGCTCATGAGCCAACATTTTTGGTTTAGACATTGTGGCTTGGTTGTCCAAATGTGGACGAC
GGGTAGCTAGTTTGGACATTGTCTAAATTTTACACAACGCAATAGACAAGCCATTGAAGACGTTTTTTGGCATGTGGT-A
GTCTAAATTTGGTATAGACCACCATTTGCAC------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S
------------S----S-------------SSSS---------S--------S-S----S-S-S-S--S----------
------S---S----S------------------SSSSSSSSS-------------------------------------
----------------------------------------------------S------------------S----S---
----------------------------SSS-----S-------S-----S--------------S--------------
----------------------------S-S-------------------SSSSSS--SSSSSSSSS-------------
-----------------------S----------------S---------S------------------S--S-------
-----------------S---------------------------------SSSS-------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------S------------------S----------
-----S-------------SSSSSSS--------------------------------SSS---------S---------
----------------------------S---------------------------S-----------------------
-------S---------------------S-------S------------------------------------------
--------S------------------------------------------SS-S-------------------------
--------------------------------------S-----S--------------------S--------------
---------------------------S---------------------------S------------------------
-------------------------------------------S------------------------------------
---------------------------S----------S-----------------------------------------
-------------------------------S------------------------------------------------
---------------------S--S-------------------SSSSSSSSSSSSSSSS--------------------
--------------------------------------------------------------------------------
---S-----------------S----------------------------------------------------------
------------------S-------------------S----SS-S-------S---------S----------S----
--S-----------S---------S--------S----------------------------------------------
----SS--------------------------------------------------------------------------
----------------------S--------S------------------------------------------------
------------------------------------------SSSSSSSSSSSSS----S---------------S----
---S-----------------------------------S--S-------------------------------------
--------------------------------------------------------------------------------
---------S------------------------------------------------S----S----------------
----S---------------------------------------------------------------------------
--------------------SS---------S-S--------S---S----SS---------------------S-----
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
------------------------------------------S---------------------------------S---
-------------------------S------------------------------------------------------
--------------------------------------------------S---------------S-------------
----------------S------------------------------------------S--------------------
--------------------------S-----------------------------------------------------
---------------------S----------------------------------------------------------
-------------------------------------------S---------------------SSSS--SSSSSS-SS
--SSS--S----------------SSSSS---------S--S------------------------------S-S-----
---------------S-----------------------------------------------------------S----
------------------S-------------------------------------------------------S-----
---------S----------------------------------------------------------------------
----------------------------------------------------S---------------------------
--S-----------S-----------------------------------------------------------------
------------------------------------------------------S-----------S-------------
-------------------------------------------------S------------------------------
-------------S------------------S----S--------------------S--------S------------
----------------S--------------SSSSSSSSSSSS
>forward_998
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------------------TATATATCCACGCCTGCCGC------------------------------------------
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>reverse_2330
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---------CACACCGTACACCGAAGTGG---------------------------------------------------
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>forward_2128
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----------------------------GTGAGCACCGGACACATACA--------------------------------
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>reverse_3268
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-------------------------------------------------------------------GTTTAAAGCTGTG
CCCGGTG-------------------------------------------------------------------------
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-------------------------------------------
