>input_sequence_40103
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CAACTCACATCTGCAGGGTGTTGGTTCCTTTGTG
TCCAAACCAAGGAAAGGCTCCCCTCCTCTCTCCCCCGCCATTACCTTCTGTCTGTCTCTGTCTCTCTCTTGAAGCTGAGG
AAAGGTAGCTGCATGCTCTCCTTGCCTGCAGGCCGGCGCCATGGAGGCCAACAAGCCTAGCTACTATCTCTTCGTCTTCG
TCTTCGCGGCGCTCCTCTTGTCCTCTATGGCTGGTTAGCTATAGCTCCACATGGTCATTGCATTTATTTCCTTTTAGCTA
GGTCATGTATGTGCTTTTCTCTTCTGTGCCTTTGTTAGTTCTTGTGCACCCGAGAATGTTGGTTCTATCGCTTTGCTTCG
GTTCTGACTTTTTGGAGTTTGTTTGAGGCAGGAGCGCAGAGGAAGCTGCTGATGAATGAAGATGATGCAGGATCGACGAT
GGTATATAAATGACCCAGCTAGCTAGTGATGCATACATCTATTTTTTGGATTCTCATATTTGTGTCGTTATATTAGATTC
CCTTTT--------------------AGCTAGCTAGCTAGCAAGAAGTTCTTAGTAAACAAATAACGAATAATTAGGTA-
-ACGTGAGAAATTTGGAGAGATATACTCTTATGGAGTCATATTTACTAATGTCTTCAAATAATGGACAAA--TTTTATTT
CAAAAGAAGAATAATAAGTTTGGTAAATCAATTCCTTAATTAACTTGTCTCCCATCTCCTCTTGG-CTGGAGAGCATAGA
AATAGGACATGCAACACAAGTTGACTAGCTAGGCATAGGACTGATCGATGCAGTTTCTCCCGACTAGAACACGGTTTT-T
TCTATGCAGCAAACTCTGAATTATTTCGTGTATATAAA------------------------------------------
---------------------------TATATGACGAACTGTAGTATTTGTTTGACGAGTTAGCACAAACACTTCAGATT
CTGTGGTGAACAAAACGATTCGAAACAAGTCATCCATTATCATTTGGATCAAATCAAAATCACAAATCATTTGAATCAAA
ATAGCACAAGCAGCAAGATGTACACTGCATGCGTCTTGTAATATGTCGGATCAAATAAGCACTAGCATATCACCTCAGAC
CCTGGCACCCTGCTGCT-TGCACGGATACATGCATATGGTCATCCGTTTGTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GTTGTAAATGATTACATGTATTG
CTCTTGTATTGTTTGTTAGCTACTACTCCCTCCGTCTTAAAAAGTTTGTCCCTTAAATGGATGTATTTAACACCAAGTTA
GTGCTAGATACATCCATTTGAGGAATAAGCTTGGGACAAGTTTTTTCGGACGGAGGGAGTATTCTCTCTGTCCGAAAAAA
CTTGTCCCAAACCTATCTTTCAAATGGATGTATCTAGCACCAAGTTAATGCTAGGTACATCTATTTGAGGGACAAGCTTT
TTCGAACGGAGGGAGTACGTACTTAGTAGCTAGCTAATTGTTTGTACCGCTCGTTAACTCTCGCGCATGCATGCGGTACT
TAGTAGCTAGCTAATTGTTTGTACCGCTCGTTAACTCTCGTGCATGCATGCGTGCATGGAATCATCCATGCAGCAGCAGG
AAGACGACGAGGTGTTGGTGGTGGTGCACGGCGGGAGAATCCTCAGGCAGGTGAAGACGAACGACTACGGGACCTATGAC
TCAACTCCGACCATGGCCAAGCCTCACTTCAAGGACATACCTAACTAACTGACCATCTACATATATATATGAGATCGACG
GCTGGATATATATATACTGCCGCTACGTGCTTCAAAGATCAAGATCTCAACACCGATGGCAGGGTTAAGGCTTTCATATA
C----ATATATATGCGAGAATATGATGTGTGCTACATATTATTTGTCCCTGAATAAATCGTATCTCATGTATCAATGCAC
GACACGCGTGTGGAACTTATATATGTC--TATATGTATGTACACTAGTTTTGTGTGGATATATATACCTGGTGTGTGCAT
CCTTGTTTGGTACTCATG----TTCGTTGATTACTCCTGC---------------------------------GCATGGC
CCGC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr3D_1_TraesCS3D01G183500
TATAATTGTTAGCATACAAAATGTTGTTTAAATTGGTCAAGCAAAACCACTGCT-----CCCTCTGTACGCTTCTAGATA
CACTCATTTCAGTGACATTTAATTCCAAACAGAGGTAATATTTTTCATGAACTACATTTTGACTGTGACATAATTTCCCC
CA-TTTTTTAACATGCATATTCACTTAAAATGATGTTTCAAATATGTGCAACTGCACCATGGAGACCGGCCACGTCAAGA
GCTAAGACGACAGAGACTGTCAAACCAAAGGGACCACTACACATGGTATGTAGCTAAAAATGCAAGGATATGAGTAGTGA
AAGTAAAATAGAGATAGCATAATTCTACGTCTGCATGCCGGAAAAGTAATTAGCCAGCAGGCTTTTAACCCTCTGCAGCT
CATCATAGTTTCAACCTCAAGTAAACTAGGACAGTTCCGGCCCGTTGGTGGTCACCATGTTGCGTGTATGGCTGTCGCTG
GTATATGGCATCTAACACCACTACTGCAGAACTCTGACCAATGTCGACCACTCTTGTGAAACCACTATATATAATCATAA
TACACAAAATTTATCCAGACTTAATTAAAGATATTCTAACCTCTTAACTTGTGGCACCTACCAGCACCAGCACAGAGCCG
AGCAACAACCAGTCTCAGCTGGATCTCGTTTTCACAGGATGACATTATTCAAAAGAAAGACAAATACGGTATGCCGTCAT
TGCACTCCAAGAATGAAGATGGTATATACGCTAGATTATATATTTGCATGGTCAGTTGCTTTAGCTTCTGGGGCTAGTTA
ATCAAACAGGCTGCACCAGCAAGTCTAGTGTGATGATGACTACAGGGCCCTGAAAACCTCCACAGGGAAAGCTCTGACCC
ATCCCTTTAATCTCCACTTTTGGTTTTAATAAGCAGCACACTCCACTGAGATTCACATCCCCATCATGCTGCCCCAGAGA
AATAGTTGTATAGTTATCAATACTAAATCCATTCTGTTCTTTCGGACAACTCACATCTGCAGGGTGTTGGTTCCTTTGTG
TCCAAACCAAGGAAAGGCTCCCCTCCTCTCTCCCCCGCCATTACCTTCTGTCTGTCTCTGTCTCTCTCTTGAAGCTGAGG
AAAGGTAGCTGCATGCTCTCCTTGCCTGCAGGCCGGCGCCATGGAGGCCAACAAGCCTAGCTACTATCTCTTCGTCTTCG
TCTTCGCGGCGCTCCTCTTGTCCTCTATGGCTGGTTAGCTATAGCTCCACATGGTCATTGCATTTATTTCCTTTTAGCTA
GGTCATGTATGTGCTTTTCTCTTCTGTGCCTTTGTTAGTTCTTGTGCACCCGAGAATGTTGGTTCTATCGCTTTGCTTCG
GTTCTGACTTTTTGGAGTTTGTTTGAGGCAGGAGCGCAGAGGAAGCTGCTGATGAATGAAGATGATGCAGGATCGACGAT
GGTATATAAATGACCCAGCTAGCTAGTGATGCATACATCTATTTTTTGGATTCTCATATTTGTGTCGTTATATTAGATTC
CCTTTT--------------------AGCTAGCTAGCTAGCAAGAAGTTCTTAGTAAACAAATAACGAATAATTAGGTA-
-ACGTGAGAAATTTGGAGAGATATACTCTTATGGAGTCATATTTACTAATGTCTTCAAATAATGGACAAA--TTTTATTT
CAAAAGAAGAATAATAAGTTTGGTAAATCAATTCCTTAATTAACTTGTCTCCCATCTCCTCTTGG-CTGGAGAGCATAGA
AATAGGACATGCAACACAAGTTGACTAGCTAGGCATAGGACTGATCGATGCAGTTTCTCCCGACTAGAACACGGTTTT-T
TCTATGCAGCAAACTCTGAATTATTTCGTGTATATAAA------------------------------------------
---------------------------TATATGACGAACTGTAGTATTTGTTTGACGAGTTAGCACAAACACTTCAGATT
CTGTGGTGAACAAAACGATTCGAAACAAGTCATCCATTATCATTTGGATCAAATCAAAATCACAAATCATTTGAATCAAA
ATAGCACAAGCAGCAAGATGTACACTGCATGCGTCTTGTAATATGTCGGATCAAATAAGCACTAGCATATCACCTCAGAC
CCTGGCACCCTGCTGCT-TGCACGGATACATGCATATGGTCATCCGTTTGTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GTTGTAAATGATTACATGTATTG
CTCTTGTATTGTTTGTTAGCTACTACTCCCTCCGTCTTAAAAAGTTTGTCCCTTAAATGGATGTATTTAACACCAAGTTA
GTGCTAGATACATCCATTTGAGGAATAAGCTTGGGACAAGTTTTTTCGGACGGAGGGAGTATTCTCTCTGTCCGAAAAAA
CTTGTCCCAAACCTATCTTTCAAATGGATGTATCTAGCACCAAGTTAATGCTAGGTACATCTATTTGAGGGACAAGCTTT
TTCGAACGGAGGGAGTACGTACTTAGTAGCTAGCTAATTGTTTGTACCGCTCGTTAACTCTCGCGCATGCATGCGGTACT
TAGTAGCTAGCTAATTGTTTGTACCGCTCGTTAACTCTCGTGCATGCATGCGTGCATGGAATCATCCATGCAGCAGCAGG
AAGACGACGAGGTGTTGGTGGTGGTGCACGGCGGGAGAATCCTCAGGCAGGTGAAGACGAACGACTACGGGACCTATGAC
TCAACTCCGACCATGGCCAAGCCTCACTTCAAGGACATACCTAACTAACTGACCATCTACATATATATATGAGATCGACG
GCTGGATATATATATACTGCCGCTACGTGCTTCAAAGATCAAGATCTCAACACCGATGGCAGGGTTAAGGCTTTCATATA
C----ATATATATGCGAGAATATGATGTGTGCTACATATTATTTGTCCCTGAATAAATCGTATCTCATGTATCAATGCAC
GACACGCGTGTGGAACTTATATATGTC--TATATGTATGTACACTAGTTTTGTGTGGATATATATACCTGGTGTGTGCAT
CCTTGTTTGGTACTCATG----TTCGTTGATTACTCCTGCGCATGGCCCGCAAAAAAAAAAGATTACTCCTGCGCATTTG
ATTATCTCCTCTGGATGTACAAAAAAGTTTGGTAGTGGTTGTATGCTCTTAGTTGATATATGT-----------------
-----------------------------------------------------------------------------TTA
GGAAAAAAAAAACTTCAAATTGTGTCGTGGCTAACAGAAAAGCATAAAAGATACATATATCATCTCGAATGATTTTGTTA
TTTTAGAAATTAAGTAGTCTTGATTGTCAGATAGGGTGCCATTTTTTGTGCAAAAGTTTACTAAACTAATTTTGCAACAA
CACTACTCAACGACCGCAAACTGAACTCTAACAATTTCTGATTTTCATAAAGCATATCACTAGCTCATGCAGATGCACGT
CTGTTCGTGTCTTGTATGTTTTTTCATTATATTATTCATGCACGCTTGAGGATTGTAGTTATATAGAAAGAAAGTATTTT
TTGTGCAAAAGTTTACTAAACTAATTTTGCAACAACACTACTCAACGACCGCAAACTGAACTCTAACAATTTCTGATTTT
CATAAAGCATATCACTAGCTCATGCAGATGCACGTCTGTTCGTGTCTTGTATGTTTTTTCATTACATTATTCATGCACGC
TTGAGGATTGTAGTTATATAGAAAGAAAGTAGGTACGTGGAACAAAGAATGAGACTGCAAGGACTCCGTATTAATAGGA-
--------TTTTCAACAAGATATATATATAAATTAGACAAACCTATTTTGTCTCTTAAAAAATGATCATACGGACTTTGC
TTGCATAAT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GAATCAAATTTTACTTACAAATTCCCGCCACAATGAACTGCAGC
TGCATTGATTTTGCACAAATGCTTACTACACTACTTATGCACACACACAAAATCGATTAACGGGGGCCTCGCCTCCGCCT
AAATTTTTATTGAAAACAAAACCATTTCAGGAGTCTTGATTGTTCCATTGACCTACCAAGGAAATGACGGACGCCCCCGA
GGGCGAAAACCCACGACCTCCCGACGCGCGGCCGTCCTTGCCGCCGGCGACCCAATCGTCG
>chr3B_1
TATAATTGTTAGCATACAAAATGGTGTTTGAATTGGTCAAGCAAAACCACTAGTCCCGGCCCTCTGTACGCTTCTAGGTA
CACACATTTCAGTGACAGTTAATTCCAAACAGAGGTAATATTTTTCATGAACTTCATTTTGACTGTGTCATAATTTTCCC
CTTTTTTTTGACATGCATATTCATTTGAAATGATGTTTCAAATATGTGCAACTGCACCATGGAGACCGGCCACGTCAAGA
GCTAAGACGACAGAGACTGTCAAAC-AAAGGGACCACTACACATGGTATGTAGCTAAAAATGCAAGGATATGAGTAGTGA
AAGTAAAATAGAGATAGCATAATTCTATGTCTGCATGCCGGAAAAGTAATTAGCCAGC-GGCTTTTAACCCTCTGCAGCT
CATCATAGTTTCAACCTCAAGTAAACTAGGACAGTTCCGGCCCGTTGGTGGTCACCATGTTGCGTGCATGGCTGTCGCTG
GTATATGGCATCTAACACCACTACTGCAGAACTCTGACCAATGTCCACCACTCTTGTGAAACCACTATATATAATCATAA
TACACAAAAATTATCCAGAGTTAATTAAAGATATTCCAACCTCTTAACTTGTGGCACCTACCAGCACCAGCACAGAGCCG
AGCAACAACCAGTCTCAGCTGGATCTCGTTTTCACAGGATGACATTATTCAAAAGAAAGACAAATACGGTATGCCGTCAT
TGCACTCCAAGAATGAAAATGGTATATATGCTAGATTATATATTTGCACGGTCAGTTGCTTTAGCTTCTGGGGCTAGTTA
ATCAAACAGGCTGCACCAGCAAGTCTAGTGTGATGATGACTACAGGGCCCTGAAAAACTCCATAGGGAAAGCTCTGACCC
ATCCCTTTAATCTCCACTTTTGGTTTTAATAAGCAGCACACTCCACTGAGATTCACATCCTCATCATGCTGCCCCAGAGA
AATAGTTGTATAGTTATCAATACTAAATCCATTCTGTTCTTTCGGACAACTCACATCTGCAGGGTGTTGGTTCCTTTGTG
TCCAAACCAAGGAAAGGCTCCCCTCCTCTCTCCCCCGCCATTACCTTCTGTCTGTCTCTGTCTCTCTCTTGAAGCTGAGG
AAAGGTAGCTGCATGCTCTCCTTGCCTGCAGGCCGGCGCCATGGAGGCCAACAAGCCTAGCTACTATCTCTTCGTCTTCG
TCTTCGCGGCGCTCCTCTTGTCCTCCATGGCTGGTTAGCTATAGCTCCACATGGTCATTGCATTTATTTCCTTTTAGCTA
GGTCATGTATGTGCTTTTCTCTTCTGTGCCTTTGTTAGTTCTTGTGCATCCGAGAATGTTGGTTCTATCGCTTTGCTTCG
GTTCTGATTTTTTGGAGTTTGTTTGAGGCAGGAGCGCAGAGGAAGTTGCTGATGAATGAAGATGATGCAGGATCGACGAT
GGTATATAAATGACCCAGCTAGCTAGTGATGCATACATCTATTTTTTGGATTCTCATATTTGTGTCGTTATATTAGATTC
CCTTTTAGCTAGATTCCCTTTTAGCTAGCTAGCAAGCTAGCAAGAAGTTCTTAGTAAACAAGGAACTAATAATTAGTTAA
CACGTGAGAAATTTGGAGAGATATACTCTTATGGAGTCAAATTTACTAATGTCTCCAAATATTGGACAAGTTTTATATTT
CAAAAGAAGAAGAATAAGTTTGGTAAATCAATTCCTTAATTAACTTGTCTCCCATCTCCTCTTGGTCTGGAGAGCACATA
AATAGGACGTGCAACACAAGTTGACTAGCTAGGCATAAGACTGATCGATGCAGTTTCTCCCGACTAGAACACGGTTTTTT
TCTATGCAGCAAACTCTGAATTATTTCAGATATATAAATACTTCCTCCATCCGGAAATACTTGTCATTTTATCCATTTTG
AGGACAAGCATTTTCGGACGGAGGAAGTATATGACGAACTGCAGATC---------------------------------
CTGTGGTGAACAAAACGATTCGAAACAAGTCATCCATTATCATTTGGATAAAATCAAAATCAGAAATCATTTGAATCAAA
CTAG----AGCAGCAAGATGTACACTGCATGCGTCTTGTAACATGTCGGATCAAATTAGCACTAGCATATCACTTTAGAC
CCTGGCACCCTGCTGCTTTGCATGGATACACGCATATGGTCATCCGTTTGTACTCCCTCCGTTCTCAAATATTTGTCTTT
CTAGGCATTTTAAATGGACTCAACATACGAATGTATGTAGACATATTTTAAAGTGTAGATTCACTCATTTTGCGCCGTAT
GTAGTCACTTGTTGAAATCTCTAGAAAGACAAGTACTCCCTCCGTAAACTAATATAAGAGCGTTTAGATCACTACTTTAG
TAATCTAAACGCTCTTATATTTGTTTACAGAGGGAGTATTTAGGAACGGAGGGAGTAGTTGTAAATGATTACATGTATTG
CTCTTGTATTGTTTGTTAGCC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGTAGCTCGCTAATTGTTTGTACCGCTCGTTAACTCTT------------------
---------------------------------------GTGCATGCATGCGTGCATGGAATCATCCGTGCAGCAGCAGG
AAGACGACGAGGTGTTGGTGGTGGTGCACGGCGGGAGAATCCTCAGGCAGGTGAAGACGAGCGACTACGGGAACTATGAC
CCAACTCCGACCATGGCCAAGCCTCACTTCAAGGACATACCTAACTAACTGACCATCTACATATATATCTGAGATCAACG
GCTGGATATACATATACTGCCGCTACGTGCTTCAAAGATCAAGATCTCAACACCGATGGCAGGGTTAATGCTTTCATATA
CATATATATATATGCGAGAGTATGATGTGTGCTACATATTATTTGTCCCCGAATAAATCGTATCTCATGTATCAATGCAC
GACACGCGTGTGGAGCTTATATATGTC--TATATGTATGTACACTAGTTTTGTGTGGATATATATACCTGGTGTGTGCAT
CCTTGTTTGGTACTCATG----TTCGTTGATTACTCCTGC---------------------------------GCATTTG
ATTATCTCCTCTGGATGTACAAAAAAGTTTGGTAGTGGTTGTATGCTCTTAGTTGATACTCCCTCCGTTCCAAAATAGAT
GACTCAATTTCGTACTAAATTTAGTACAAAGGTAGTACAAACTTGGGTCATCTATTTTGGAACGGAGGGAGTATATGTTA
GGAAAAAAAAACCTTGAAATTGTGTCATGGCTAACACAAAAGCATAAAAGATACATAAATCATCTCGGATGATTTTATTA
TTTTAGAAATTAATTAGTCTTGATTGTCAGATAGGATGCCG-TTTTTGTGCAAAAGTTTACTAAACTAATTTTGCAACAA
CACTACTCAA-GACCGCAAACTGAACTCTAACAATTTCTGATTTTCATAAAGCATATCACTAGCTCATGCGGATGCACGT
CTGTTCGTGTC---------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTGTGTGGTTTTTCATTACATTATTCATGCACGC
TTGAGGATTGTAGTTATATAGAAAGAAAGTAGGCGCGTGAAACAAAGAATGAGATTGTAAGGACTCCGTATTAATAGGAT
TTTAAGGGTTTTCAACAAGATATATATAAAAATTAGACAAACCTATTTTGTCTCTTAAAAAACGA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>chr3A_228
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GTCAAGA
CCTAAGATGAC--AGACTGTCAAAC-AAAGGGACCACTACGTGCTATGTAGC----AAAATGCAAGGATATGAGTAGTGA
AAGTAAAATAGAGATAGCATAATTCTACGTCTGCATGCCGGAAAAGTAATTAGCCAGCAGGCTTTTAACCCTCTGCAGCT
CATCATAGTTTCAACCTCAAGTAAACTAGGACAGTTCCGGCCCGTTGGTGGTCACCATGTTGCGTGCATGGCTGTCGCTG
GTAT--GGCATCTAACACCACTACCGCAGAACTCTGACCAATGTCCACCACTCTTGTGAAACCACTATATATAATCATAA
TACACAAAATTTATCCAGGCTTAGTTAAAGATATTCTAACCTGTTAACTTGTGGCACCTACCAGCACCAGCACAGAGCCG
AACAACAACCAGTCTCAATTGGATCTCGTTTTCACAGGATGACATTATTCAAAAGAAAGACAAATACGGTATGCCGTCAT
TGCACTCCAAGAATGAATATGGTATATATGCTAGATTATATACTTGCATGGTCAGTTGCTTTAGCTTCTGGGGCTAGTTA
ATCAAACAGGCTGCACCAGCAAGTCTAGTGTGATGATGACTACAGGGCCCTGAAAAACTCCACAGGGAAAGCTCTGACCC
ATCCCTTTAATCTCCACTTTTGGTTTTAATAAGCAGCACACTCCACTGAGATTCACATCCCCATCATGCTGCCCCAGAGA
AATAGTTGT----------ATACTAAATCTATTCTGTTCTTTCGGACAACTCACATCTGCAGGGTGTTGGTTCCTTTGTG
TCCAAACCAAGGAAAGGCTCCCCTCCTCTCTCCCCCGCCATTACCTTCTGTCTGTCTCTGTCTCTCTCTTGAAGCTGAGG
AAAGGTAGCTGCATGCTCTCCCTGCCTGCAGGCCGGCGCCATGGAGGCCAACAAGCCTAGCTACTATCTCTTCGTCTTCG
TCTTCGCGGCGCTCCTCTTGTCCTCCATGGCTGGTTAGCTATAGCTCCACATGGTCGTTGCATTTATTTCCTTTTAGCTA
GGTCATGTATGTGCTTTTCTCTTATGTGCCTTTGTTAGTTCTTGTGCATCCGAGAATGTTGGTTCTATTGCTTTGTTTCG
GTTCTGATTTTTTGGAGTTTGCTTGAGGCAGGAGCGCAGAGGAAGTTGCTGATGAGTGAAGATGATGCAGGATCGAGGAT
GGTATATAAATGACCCAGCTAGCTAGTGATGCATACATCTATTTTTTGGATTCTCATATTTGTGTTGTTATATTAGATTC
CCTTTTAGCTAG----------------CTAGCAAGCTAGCAAGAAGTTCTTAGTAAACAAGGAACTAATAGTT-GTTAA
CACGTGAGAAATTTGAAGAGATATACTCCTATGGAGTCATATTTACTAATGTCTTCAAATATTGGACAAA--TTTTATTT
CAAAAGAAGAAGAATAAGTTTAGTAAATCAATTCCTTAATTAACTTGTCTCCCATCTCCTCTTGGTCTGGATAGCACATA
AATAGGACATGCAACACAAGTTGACTAGCTAGGCATAAGACTTATCGATGCAGTTTCTCCCGACTAGAACACGG-TTTTT
TCTATGCAGCAAACTCTGAATTATTTCGTATATAA---------------------------------------------
------------------------AAATATATGACGAACTGCAGACC---------------------------------
ATGTGGTGAACAAAACGATTCGAAACAAGTCATCCATTATCATTTGGATCGAATCAAAATCACAAATCATTCGAATGAAA
CTAGCACAAGCAGCAAGATGTACACTGCATGCGTCTTGTAATATGTCGGATCAAATTAGCACTAGCATATCACTTCGGAC
CCTGGCACCCTGCTGCTT-GCATGGATACATGCATATGGTCATCCGTTTGTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GTTGTAAATGATTACATGTATTG
CTCTTGTATTGTTTGTTAGCC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGTAGCTAGCTAATTGTTTGTACCGCTCGTTAACTCTT------------------
---------------------------------------GTGCATGCATGCGTGCATGGAATCATCCGTGCAGCAGCAGG
AAGACGACGAGGTGTTGGTGGTGGTGCACGGCGGGAGAATCCTCAGGCAGGTGAAGACGAACGACTACGGGACCTATGAC
CCAACTCCGACCATGGCCAAGCCTCACTTCAAGGACATACCTAACTAACTGACCATCTACATATATATCTGAGATCGACG
GCTGGATATATATATACTGCCGCTACGTGCTTCAAAGATCAAGATCTCAACACCGATGGCAGGGTTAATGCTTTCATATA
C----ATATATATGCGAGAATATGATGTGTGCTACATATTATTTGTCCCCAAATAAATCGTATCTCATGTATCAATGCAC
GACACGCGTGTGGAACTTATATATGTCTATATATGTATGTACACTAGTTTTGTGTGGATATATATACCTGGTGTGTGCAT
CCTTGTTTGGTACTCATGCATGTTCGTTGATTACTCCTGCAT---------------------------------ATTTG
ATTATCTCCTTTGGATGTACAAAAAAA-TTGGTAGTGGTTGTATGCTCTTAGTTGATATATGT-----------------
-----------------------------------------------------------------------------TTA
GGAAAACAAAACCTTGAAATTGTGTCGTGGCTAACAAAAAAGCATAAAAGATACATATATCATCTCGAATGATTTTGTTA
TTTTAGAAATTAAGTAGTCTTGATTGTCAGATAGGATGCCATTTTTTGTGCAAAAGTTTACTAAACTAATTTTGCAACAA
CACTACTCAACGATCGCAAACTGAACCCTAACAATTTCTGATTTTCATAAAGCATATCACTAGCTCATGCGGATGCACGT
CTGTTCATGTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTGTGTGTTTTTTCATTACATTATTCATGCACGC
TTGAGGATTGTAGTCATATAGAAAGAAAGTAGGCACGTGGAACAAAGAATGAGACTGTAAGGACTCCATATTAATAGGAT
TTTAAGGATTTTCAACAAGATATATAAAAAAATTAGACAAACCTATTTTGTCTCTTAAAAA-TGATCATACGGACTTTGG
TTGCATAATTGTTGACGTATAATGTGCTGCCTAGTCTTTTCCATCAGATCGGTTTTTTGGTTGCATTGGCTAGAGCATGC
ACTTCTACATGGTATCGGAGTCAAGGGGGAGTGTTGACGTATAATGTGTTGCCTAGTCTCTTCCTTCAGATCGGTCTTTT
GTTTGCATTGGCTAGAGCGTGCACTTCTACAATAATGAATCAAATTTTACTTACAAATTCCTGCCACAATGAACTGCAGC
TGCATCGATTTTGCACAAATGCTTACTACACTACTTATGCACACACACAAAATCAATTAACGGGGGCTTCGCCTCAACCT
AAATTTTTATTGAAAACAAAACCA--------------------------------------------------------
-------------------------------------------------------------
>SNPs
-----------------------S-----S---------------------SS------------------------S--
---S-------------S-----------------------------------S-------------S--------S---
-S-------S-------------S--S-----------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S----------S---------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
------------------------------------------------S-------------------------------
-------S-------------------------------------S----------------------------------
--------------------------------------------------------------------------------
---------------------------------S---------------------------SS---S---------S---
-------------------------------------------------------------S------------------
-----------S----------------------------------------------------------------S-S-
-------------------------------------S------------------------------------------
-----------------------------S--------------------------------------------------
-----------------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--------------------------------------------------------------------------------
S-------------------------------------------------------S----------------S------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------S-----------
--------------------------------------------------------------------S-----------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S---S--------------------S-------------------------------------------
-----------------------------------S--------------------------------------------
----------------------------------------------------------------------S---------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----------------------------
---------------------------------S-----------------------S----------------------
----------------------------S--------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
-----S------------------------------------------------S------------S-------SS---
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_53
---------------------------------TGGTCAAGCAAAACCACTGC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_2081
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ATAGCACAAGCAGCAAGATGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>forward_1368
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CGCTTTGCTTCG
GTTCTGAC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_2823
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ACCGCTCGTTAACTCTCGTG--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>forward_2784
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TACCGCTCGTTAACTCTCGC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>reverse_3885
--------------------------------------------------------------------------------
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--------------------------------------------ACGACCGCAAACTGAACTCT----------------
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