>input_sequence_40045
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-------------------------------------------ATGGTTAATCTAGAGGATTGTGGTGAAAGGCTTATAT
TTCCATCTCTAGAAAGACTTCCGTTTCTTACAACAATCAAGTTGAGCAACCTGCGGAAAATTAGAGAAGTATTAGTTCCA
TCATTGCAGGAGCTGATTTTAGTTGAAATGCCAGAGTTGGAGAGATGTACCTGCACTTCCCTAGGGGATTTGAACTCTAG
TTTAAGGGTACTGGAGATTCGGAGCTGCCCTGCACTCAAGGTGTTCGATCTGTTTGAGAAAGGTCATAACTTTGCTGAGC
AGCCGTCATTGTTTGAAGGTCATAACTACGGAACTGGGTGGAAGCTATGGTTGCCTGGTCTTAGAGTACTCATAGTAATC
AATTGTCCTCATTTACTGATGCCGTGTCTCCTACCACATTCAACTAATGTTTCTAGACTGCACATCGACGGAGTTCCAAC
ACTTCTGAAGATGGAGGGATCGTCCACAGAAAAACTAGAAATTTCTCCAAATAGTCGATCTGGTGAGAATTCCGGTGAGA
CATTGAGATTGGATGGAAAAATATTGGCATTCCATAATTGGGGGGACCTAAAATCCTTGAGCATATCATTTTGTGGAAAC
CTAACATCTATTTCATTTCGAAGTCTTAATCAGCTCTTCTCTTTAAGGGATCTCCGTATAGTAGGGTGCAGAAAACTTTT
CTCTTCAGATGTTCGGCCAGAGCTTACTGATGAATATGCGATAGGTGCATATCGGTTTGGCCTCCGGTGTCTCAGAAGTC
TCTATATTAGTTCATCAGGAATAACAGGGAAGTGGTTATCTTTGATGTTGCAACATGCGCAAATCCTGAAGGAACTGTGC
TTAAATGACTGCCCTCAGTTCACACAATTACAGATTGAAGAGGAAGAGAACAGTCAACCAAATTTTATCTCAGCCCCAGA
GACTTCATCAAGCTGGGGTCCAGATGGACTTTTGTGCATTCCATTAAATCTCACCTCCTCTCTAGAAAAGATAGCTATTT
CTCGAAGCCCTTATTTGAGATTTTACGGGAAGAAGGAAGACTTTGCTGGATTTACCTCCCTGCAGGAGCTAATAATTCGA
TGCTGTCCTGGGCTGCTCTCATCCTTGGTGCATAATGACGGAAATGATGTCCAGGCAAACAGAACATGGCTTCTTCCGCA
GCCACTTGGACAAGTTGTGATCAGTCATTATGATCACAAAACACTATCACTCTGCTTCATGGGTAATCTCACCTGTCTCA
AAAAATTGGAAGTATTGGAAAGCCCAGGCTTGGAATCTCTACAGCTGCATTCCTGCACGTCGCTTGAAGATTTGAGAATT
CGTGAATGCAAACAGCTTGCCACAGTAAAGGGAATGCAATCCCTTGTGAACCTCATGAATTTGGAAGTACAAGAAAACCC
TAGTTTGGTATCTCTACAGTTGCATTCCTGCAGGTCGCTGGAAGATCTGAGAATTGAAAAATGTGAATCACTCATCGCAC
TAGAGGGCTTGCAATCCCTTGTGAACCTCAGGAATTTGGCCCTACTCAACTCCCCTGGCTTGCCTCCATATTTGGAACGT
TTGTCGGGGCACTATGAGCTGGGCCCTCGACTCGAAAGTCTTCACATTGATGACTTGTCTCTCCTTACCATGTCACTGTG
CAATGGCCTCACTTGCCTCCAATGCCTACGACTTGAGAAGCTGGAACAGGGAGGGACAAGACTAACAGATGAGCAAGAGA
GAGCGCTACTGCTCCTCAGGTCCCTGCAAAACCTTGAATTTGATGATTGTTTCAACCTCGTACATCTTCCTGTGAGACTG
CACAGCCTTCCTTCCCTCAAGACATTGAGTATCGTTTGTTGTGATGACATCCCAAGGCTGCCTAAGAAGGGCCTCCCATC
TTCGCTGGAAAGGCTAGTGATATACGATTGCAGTACTGAGCTAAGAGAACAGTGTGAATCGCTAACAAGAGGCAAGCTAA
GGGTTGTGATGAATGACTGA------------------------------------------------------------
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>chr3A_1_TraesCS3A01G453500
TGCAAAAAGGAGAGGTACGGTTGAACCAATTAAGTTAACTGGTTTGCAAGAAGATGATTTTTGGATATTGTTTAAAGCGT
GTGTGTTTGGTGATGAGAACTATGAAGTGAAAGGTAGTCTTAGGACTTTGGCATGGCAGATAATAGAAAAGTTGAAAGGA
AACCCGCTAGCTGCAGAAACTGCAGGGGCATTATTAAGACAGCATCTTACCAGTGAACATTGGAGTAACATTCTGAAGAA
CGAAGATTGGAAATCCCTGCAACTCACAAGAGGCATTATGCCTACTTTGAAGCTTTGTTATGATCAACTGCCCTACCATT
TACAACAATGCTTCTCATATTGTGCTATATTCCCTTGCAATTATCGGTTTCTCGCTGAGGAGATAGTTCGTATTTGGATT
TCACAGGGATTTGTTAAGTGTAGTCATTCAGGTATGAGATTGGATGAGATAGGACGACTCTATCTAACTAATTTAGTGAA
CCTGGGCTTCTTTCAGCAGATTGAAGTAGGCTACTCTT---CAAACAATCAAACTACTTATGTTATGTGTGCTCTTATGC
ATGATTTCGCAAGGGTAATTTCAAGAGCTGAGTGTGCAACTTTGGATGCTCTACAGTGCAATGAAATTTCATCAACTGTG
CTACATTTGTCAATAGTAACTGGTCGTGTGTATTGGTATGATGAGAAGTTTCAAGAGATATTGCGAAATACAATGAAAAA
GGTTAAAAATTTGAGATCATTGGTCTTAATTGGACAGTACGACTCCCAATTGTTCCAACAAGTATTTGAGAAGGCACACA
ATTTGCGTCTATTACAAGTATCTGCAACTGCCGGGTCTCATTCCTTCCTATGCGGTTTGGTAAATCCTACACATCTTCGG
TATCTAAACCTACAGGATGCTCATGTTTGGCCGGGAGATTTACCTCAAGTTTTGAGCAAGTTTCTCCACCTTCAAGTATT
AGAAGTTGGCTTATGCCGTGATACTTCGTTTACCCTTGAGCGGATGGTTAATCTAGAGGATTGTGGTGAAAGGCTTATAT
TTCCATCTCTAGAAAGACTTCCGTTTCTTACAACAATCAAGTTGAGCAACCTGCGGAAAATTAGAGAAGTATTAGTTCCA
TCATTGCAGGAGCTGATTTTAGTTGAAATGCCAGAGTTGGAGAGATGTACCTGCACTTCCCTAGGGGATTTGAACTCTAG
TTTAAGGGTACTGGAGATTCGGAGCTGCCCTGCACTCAAGGTGTTCGATCTGTTTGAGAAAGGTCATAACTTTGCTGAGC
AGCCGTCATTGTTTGAAGGTCATAACTACGGAACTGGGTGGAAGCTATGGTTGCCTGGTCTTAGAGTACTCATAGTAATC
AATTGTCCTCATTTACTGATGCCGTGTCTCCTACCACATTCAACTAATGTTTCTAGACTGCACATCGACGGAGTTCCAAC
ACTTCTGAAGATGGAGGGATCGTCCACAGAAAAACTAGAAATTTCTCCAAATAGTCGATCTGGTGAGAATTCCGGTGAGA
CATTGAGATTGGATGGAAAAATATTGGCATTCCATAATTGGGGGGACCTAAAATCCTTGAGCATATCATTTTGTGGAAAC
CTAACATCTATTTCATTTCGAAGTCTTAATCAGCTCTTCTCTTTAAGGGATCTCCGTATAGTAGGGTGCAGAAAACTTTT
CTCTTCAGATGTTCGGCCAGAGCTTACTGATGAATATGCGATAGGTGCATATCGGTTTGGCCTCCGGTGTCTCAGAAGTC
TCTATATTAGTTCATCAGGAATAACAGGGAAGTGGTTATCTTTGATGTTGCAACATGCGCAAATCCTGAAGGAACTGTGC
TTAAATGACTGCCCTCAGTTCACACAATTACAGATTGAAGAGGAAGAGAACAGTCAACCAAATTTTATCTCAGCCCCAGA
GACTTCATCAAGCTGGGGTCCAGATGGACTTTTGTGCATTCCATTAAATCTCACCTCCTCTCTAGAAAAGATAGCTATTT
CTCGAAGCCCTTATTTGAGATTTTACGGGAAGAAGGAAGACTTTGCTGGATTTACCTCCCTGCAGGAGCTAATAATTCGA
TGCTGTCCTGGGCTGCTCTCATCCTTGGTGCATAATGACGGAAATGATGTCCAGGCAAACAGAACATGGCTTCTTCCGCA
GCCACTTGGACAAGTTGTGATCAGTCATTATGATCACAAAACACTATCACTCTGCTTCATGGGTAATCTCACCTGTCTCA
AAAAATTGGAAGTATTGGAAAGCCCAGGCTTGGAATCTCTACAGCTGCATTCCTGCACGTCGCTTGAAGATTTGAGAATT
CGTGAATGCAAACAGCTTGCCACAGTAAAGGGAATGCAATCCCTTGTGAACCTCATGAATTTGGAAGTACAAGAAAACCC
TAGTTTGGTATCTCTACAGTTGCATTCCTGCAGGTCGCTGGAAGATCTGAGAATTGAAAAATGTGAATCACTCATCGCAC
TAGAGGGCTTGCAATCCCTTGTGAACCTCAGGAATTTGGCCCTACTCAACTCCCCTGGCTTGCCTCCATATTTGGAACGT
TTGTCGGGGCACTATGAGCTGGGCCCTCGACTCGAAAGTCTTCACATTGATGACTTGTCTCTCCTTACCATGTCACTGTG
CAATGGCCTCACTTGCCTCCAATGCCTACGACTTGAGAAGCTGGAACAGGGAGGGACAAGACTAACAGATGAGCAAGAGA
GAGCGCTACTGCTCCTCAGGTCCCTGCAAAACCTTGAATTTGATGATTGTTTCAACCTCGTACATCTTCCTGTGAGACTG
CACAGCCTTCCTTCCCTCAAGACATTGAGTATCGTTTGTTGTGATGACATCCCAAGGCTGCCTAAGAAGGGCCTCCCATC
TTCGCTGGAAAGGCTAGTGATATACGATTGCAGTACTGAGCTAAGAGAACAGTGTGAATCGCTAACAAGAGGCAAGCTAA
GGGTTGTGATGAATGACTGAATTTTGCGCAGGGCGATGCAGAAACATC-TTCTTTCAAGATTCAAGACGCGTGTCCTTGT
TTGGGGATATGTGCTACAGCTCACCGCTAGGTTTACAACTGTTCTACCATTGATCATGTTATCTTGAGAATTGACATAAC
TCAGCGTCGTGCTAAAATGAGCGGTCTCTCTGCAAGCATTTGAAGATGTTGAACATATTGTTGATGCAGTAACCATCTTT
AGGATCATGACATATACCGTATAATTATAAGGTATTGGAGAGAGTGCTCAGGCCATCCCTGTTTCTCCTGGGCGACCTGT
TATATAACCTATGTTTGAAGAAATAAATTATGCTAGACATATTTATCTACTCTTATGAGTATCAAATAG----TACTTGT
CTTATTCTGCAGAGTTTTGATTTCACACCAGAATCTCATCCTCAAGCACTCATATTAATGAC-----------TGGTGTC
TCATAATCTAATCTCTGCTATTAACACGTTCGGATTTCTGGAAGAAAACTGGTAATTTTTGCTCTATTATTGTTGCCATG
CTAACTGAAAGCAGTCAACGGTTTTTGGCCCAGTAGGTCAGTC--------------TGTAATTCTAAACTAGATGGTGT
GGTTTCATCAAATGGAATCGGGGTGAGAGCCCTTTTGATCTAAA------------------------------------
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-------------------------------------TATGTGGATCTGCTTTTGTTTTGTAATGCTTGAATGCCTAACA
ATCTGACTTGGGAGCTTTTGTTTATCTCCACTAAATGATGAAATTGTATGTATGTAAGGCAACTTTCTCATAATGAGATA
ATGCTGTGTTAAGGATGTACAGCTTGGAAATTCAAACTGGACTTATGTCATCTTGTAGACTGAAAAATTTCTGAATTCAG
ATATTCCAATTTGTATTGAATCATTCCTTCCACCTGAAGTAGAAGACTTTTTTTTTTGGTGTTAGTTGCTTCTAAATATA
GTAAGCTAGCTCTTAGAACACTGTAGAACATGTTGAGCCAATATTAAACTATAGAAGGATCAGTATTCCTTTTGTTACAT
CAA
>chr3D_1
TGCAAAAAGGAGAGGTACGGTTGAACCAATTAAGTTACCTGGTTTGAAAGAAGATGATTTTTGGATATTGTTTAAAGCGT
GTGTGTTTGGTGATGAGAACTATGAAGTGAAAGGTAGTCTTAGGACTTTGGCATGGCAGATAATAGAAAAGTTGAAAGGA
AACCCGCTAGCTGCAGAAACTGCAGGGGCATTATTAAGACAGCATCTTACCAGTGAACATTGGAGTAACATTCTGAAGAA
CGAAGATTGGAAATCCCTGCATCTCACAAGAGGCATTATGCCTACTTTGAAGCTTTGTTATGATCAACTGCCCTACCATT
TACAACAATGCTTCTCATATTGTGCTATATTCCCTTGCAATTATCGGTTTCTCGCTGAGGAGATAGTTCGTATTTGGATT
TCACAGGGATTTGTGAAGTGTAGTCATTCAGGTATGAGATTGGATGAGATAGGACGGCTCTATCTGACTAATTTAGTGAA
CCTGGGCTTCTTTCAGCAGATTGAAGAAGGCTACTCTT---CAAACAATCAAACTACTTATGTTATGTGTGCTCTTATGC
ATGATTTCGCAAGGGTAATTTCAAGAGCTGAGTGTGCAACTTTGGATGCTCTACAGTGCAATGAAATTTCATCAACTGTG
CTACATTTGTCAATAGTAACTGGTCGTGTGTATTGGTATGATGAGAAGTTTCAAGAGATATTGCGAAATACATTGAAAAA
AGTAAAAAATTTGAGATCATTGGTCTTAATTGGACAGTACGACTCCCAATTGTTCCAACAAGTATTTGAGAAGGCACACA
ATTTGCGTCTGTTACAAGTATCTGCAACTGCTGGGTCTCATTCCTTCCTATGCGGTTTGGTAAATCCTACACATCTTCGG
TATCTAAACCTACAGGATGCTCATGTTTGGCCGGAAGATTTACCTCAAGTTTTGAGCAAGTTTCTCCACCTTCAAGTATT
AGAAGTTGGCTTATGCCATGATACTTCGTTTACCCTTGAGCGGATGGTTAATCTAGAGGATTGTGGTGAAAGGCTTATAT
TTCCATCTCTGGAAAGACTTCCGTTTCTTACGACGTTCAAGTTGAGCAACCTGCGGAAAATTAGAGAAGTATCAGTTCCA
TCATTGCAGGAGCTGATTTTAGTTGAAATGCCAGAGTTGGAGAGATGTACCTGCACTTCCCTAGGGGATTTGAACTCTAG
TTTAAGGGTACTGGAGATTCGGAGCTGCCCTGCACTCAAGGTGTTCGATCTGTTTGAGAAAGGTCATAACTTTGCTGAGC
AGCCGTCATTGTTTGAAGGTCATAACTACGGAACTGGGTGGAAGCTATGGTTGCCCGGTCTTAGAGTACTCACAGTAATC
AATTGTCCTCATTTACTGATGCCGTGTCTCCTACCACATTCAACTAATGTTTCTAGACTGCACATCGACGGAGTTCCAAC
ACTTCTGAAGATGGAGGGATCGTCCACAGAAAAACTAGAAATTTCTCCAAATAGTCGATCTGGTGAGAATTCCGGTGAGA
CATTGAGATTGGATGGAAAAATATTGTCATTCCATAATTGGGGGGACCTAAAATCCTTGAGCATATCATTTTGTGGAAAC
CTAACATCTATTTCATTTCGAAGTCTTAATCAGCTCTTCTCTTTAAGGGATCTCCGTATAGTAGGGTGCAGAAAACTTTT
CTCTTCAGATGTTCGGCCAGAGCTTACTGATGAATATGCGATAGGTGCATATCGGTTTGGCCTCCGGTGTCTCAGAAGTC
TCTATATTAGTTCATCAGGAATAACAGGGAAGTGGTTATCTTTGATGTTGCAACATGCGCAGATCCTGAAGGAATTGTGC
TTAAATGACTGCCCTCAGTTTACACAGTTACAGATCGAAGAGGAAGAGAACAGTCAACCAAATTTTATCTCAGCCCCAGA
GACTTCATCAAGCTGGGGTCCAGATGGACTTTTGTGCATTCCATTAAATCTCACCTCCTCTCTAGAAAAGATAGCTATTT
CTCGAAGCCCTTATTTGAGATTTTACGGGAACAAGGAAGACTTTGCTGGATTTACCTCCCTGCAGGAGCTAATAATTCGA
TGCTGTCCTGGGCTGCTCTCATCCTTGGTGCATAATGACGGAAATGATGTCCAGGCAAACAGAATATGGCTTCTTCCGCA
GCCACTTGGACAAGTTGTGATCAGTCATTATGACCACAAAACACTATCACTCTGCTTCATGGGTAATCTCACTTGTCTCA
AAAAATTGGAAGTATTGGAAAGCCCAGGCTTGGAATCTCTACAGCTGCATTCCTGCACATTGCTTGAAGATTTGAGAATT
CGTGAATGCAAACAGCTTGCCACAGTAAAGGGAATGCAATCCCTTGTGAACCTCATGAATTTGGAAGTACAAGAAAACCC
TAGTTTGGTATCTCTACAGTTGCATTCCTGCAGGTCGCTGGAAGATCTGAGAATTGAAAAATGTGAATCACTCATCGCAC
TAGAGGGCTTGCAATCCCTTGTGAACCTCAGGAATTTGGCCCTACTCAACTCCCCTGGCTTGCCTCCATATTTCGAACGT
TTGTCGGGGCACTATGAGCTGGGCCCTCGACTCGAAAGTCTTCACATTGATGACTTGTCTCTCCTTACCATGTCACTGTG
CAATGGCCTCACTTGCCTCCAATGCCTACGACTTGAGAAGCTGGAACAGGGAGGGACAAGACTAACAGATGAGCAAGAGA
GAGCGCTACTGCTCCTCAGGTCCCTGCAAAACCTTGAATTTCTTGATTGTTTCAACCTCGTACATCTTCCTGTGAGACTG
CACAGCCTTCCTTCCCTCAAGGCATTGAGTATCGTTTGTTGTGATGACATCCCAAGGCTGCCTAAGAAGGGCCTCCCATC
TTCGCTGGAAAGGCTAGTGATATACGATTGCAGTACTGAGCTAAAAGAACAGTGTGAATCGCTAACAAGAGGCAAGCTAA
GGGTTGTGATGAATGACTGAATTTTGCGCAGGGCGATGCAGAAACATC-TTCTTTCAAGATTCAAGACGCGTGTCCTTGT
TTGGGGATATGTGCTACAGCTCACCGCTAGGTTTACAACTGTTCTACCATTGATCATGTTATCTTGTGAATTGACATAAC
TCAGCGTCGTGCTAAAATGAGCAGTCTCTCTGCAAGCATTTGAAGATGTTGAACATATTGTTGATGCAGTAACCATCTTT
AGGATCATGACATATACCGTATAATTATAAGGTATTGGAGAGAGTGCTCAGGCCATCCCTGTTTCTCCTGGGCGACCTGT
TATATAACCTATGTTTGAAGAAATAAATTATGCTAGACATATTTATCTACTCTTGTGAGTTATGAGTATCAAATACTTGT
CTTATTCTGCAGAGTTTTGATTTCACACCAGAACCTCATCCTCTGGTAATTTTTGTCTTATTCTGCAGAGTTTTGGTGTC
TCATAATCTCATCTCTGCTATTAACATGTTCGGATTTCTGGAAGCAAACTGGTAATTTTTGCTCTATTATTGCCGTCATG
CCAACTAAAAGCAGTCAACAGTTTCTGGCCCAGTAGGTCGGTGTGGCCCGAGTGCTTTGTAATTGTAAACTGGATGGTGT
GGTTTCATCAAATGGAATCGGGGTGAGAGCCCTTTTGATCTAAA------------------------------------
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>chr3B_1
TGCAAAAAGGAGAGGTACGGTTGAACCAATTAAGTTACATGGTTTGAAAGAAGATGATTTTTGGATATTGTTTAAAGCGT
GTGTGTTTGGTGATGAGAACTATGAAGTGAAAGGTAGTCTTAGGACTTTGGCATGGCAGATAATAGAGAAGTTGAAAGGA
AACCCGCTAGCTGCAGAAACTGCAGGGGCATTATTAAGACAGCATCTTACCAGTGAACATTGGAGTAACATTCTGAAGAG
CGAAGATTGGAAATCCCTGCAACTCAGAAGAGGCATTATGCCTACTTTGAAGCTTTGTTATGATCAACTGCCCTACCATT
TACAACAATGCTTCTCATATTGTGCTATATTCCCTTGCAATTATCGGTTTCTCGCTGAGGAGATAGTTCGTATTTGGATT
TCACAGGGATTTGTGAAGTGTAGTCATTCAGGTATGAGATTGGATGAGATAGGACGGCTCTATCTGACTAATTTAGTGAA
CCTGGGCTTCTTTCAGCAGATTGAAGGAGGCTACTCTT---CAAACAATCAAACTACTTATGTTATGTGTGGTCTTATGC
ATGATTTCGCAAGGGTAATTTCAAGAGCTGAGTGTGCAACTTTGGATGCTCTACAGTGCAATGAAATTTCATCAACTGTG
CTACATTTGTCAATAGTAACTGGTCGTGTGTATTGGTATGATGAGAAGTTTCAACAGATATTGCGAAATACATTGAAAAA
AGTTAAAAATTTGAGATCATTGGTCTTAATTGGACAGTACGACTCCCAATTGTTCCAACAAGTATTTGAGAAGGCACACA
ATTTGCGTCTGTTACAAGTATCTGCAACTGCTGGGTCTCATTCCTTCCTATGCGGTTTGGTAAATCCTACACATCTTCGG
TATCTAAACCTACAGGATGCTCATGTTTGGCCGGGAGATTTACCACAAGTTTTGAGCAAGTTTCTCCACCTTCAAGTATT
AGAAGTTGGCTTATGCCGTGATACTTCGTTTACCCTTGAGCGGATGGTTAATCTAGAGGATTGTGGTGAAAGGCTTATAT
TTCCATCTCTAGAAAGACTTCCGTTTCTTACGACGTTCAAGTTGAGCAACCTGCGGAAAATTAGAGAAGTATCAGTTCCA
TCATTGCAGGAGCTGATTTTAGTTGAAATGCCAGAGTTGGAGAGATGCACCTGCACGTCCCTAGGGGATTTGAACTCTAG
TTTAAGGGTACTGGAGATCCGGAGCTGCCCTGCACTCAAGGTGTTCGATCTGTTTGAGAAAGGTCATAACTTTGTTGAGC
AGCCATCATTGTATGAAGGTCATAACTACGAAACTGGGTGGAAGCTATGGTTGCCCGGTCTTAGAGTACTCACAGTAATC
AATTGTCCTCATTTACTGATGCCGTGTCTCCTACCACATTCAACTAATGTTTCTAGACTGCACATCGACGGAGTTCCAAC
ACTTCTGAAGATGGAGGGATCGTCCACAGAAAATCTAGAAATTTCTCCAAATAGTCGATCTGGTGAGAATTCCGATGAGA
CAGTGAGATTGGATGGAAAAATATTGGCATTCCATAATTGGGGGGACCTAAAATCCTTGAGCATATCATGTTGTGGAAAC
CTAACATCTATTTCATTTCGAAGTCTTAATCAGCTCTTCTCTTTAAGTGATCTCCGTATAGTAGGGTGCAGAAAACTTTT
CTCTTCAGATGTTCGGCCAGAGGTTACCGATGAATATGCGATAGGTGCATATCGGTTTGGCCTCCGGTGTCTCAGAAGTC
TCTATATTAGTTCATCAGGAATAACGGGGAAGTGGTTATCTTTGATGTTGCAACATGCGCAGATCCTGAAGGAATTGTTC
TTAAATGACTGCCCTCAATTTACACAGTTACAGATTGAAGAGGAAGAGAACAGTCAACCAAATTTTATCTCAGCCCCAGA
GGCTTCATCAAGCTGGGGTCCAGATGGACTTTTGTGCATTCCATTAAATCTCACCTCCTCTCTAGAAAAGATAGCTATTT
CTTGAAGCCCTTATTTGAGATTTTACGGGAACAAGGAAGACTTTGCTGGATTTACCTCCCTGCAGGAGCTAATAATTCGA
TGCTGTCCTGGGCTGCTCTCATCCTTGGCGCATAATGAAGGAAATGATGTCCAGGCAAACAGAACATGGCTTCTTCCACA
GCCACTTGGACAAGTTGTGATCAGTAACTATGACCACAAAACACTATCACTCTGCTTCATGGGTAATCTCACCTGTCTCA
GAAAATTGGAAGTATTGGAAAGCCCAGGCTTGGAATCTCTACAGCTGCATTCCTGCACATCGCTTGAAGATTTGAGAATT
CGTGAATGCAAACAGCTTGCCACAGTAAAGGGAATGCAATCCCTTGTGAACCTCATGAATTTGGAAGTACAAGAAAACCC
TAGCTTGGTATCTCTACAGTTGCATTCCTGCAGGTCGCTGGAAGATCTGAGAATTGAAAAATGTGAATCACTCATCGCAC
TAGAGGGCTTGCAATCCCTTGTGAACCTCAGAAATTTGGCCCTACTCAACTCCCCTGGCTTGCCTCCATATTTGGAACGT
TTGTTGGGGCACTATGAGTTGTGCCCTCGACTCGAAAGTCTTCACATTGATGACTTGTCTCTCCTTAACATGTCACTGTG
CAAAGGCCTCACTTGCCTCCAATGCCTACGACTTGAGAAGCTGGAACGGGGAGGGACAAGACTAACAGATGAGCAAGAGA
GAGCGCTACTGCTCCTCAGGTCCCTGCAAGACCTTGAATTTCAAGATTGTTTAAACCTCGTACATCTTCCTGCGAGACTG
CACAGCCTTCCTTCCCTCAAGACATTGATGATCGTTTGTTGTGAAGACATCCCAAGGCTGCCTAAGAAGGGCCTCCCATC
TTCGCTGGAACGGCTAGTGATATACGATTGCAGTACTGAGCTAAGAAAACAGTGTGAATCGCTAACAAGAGGCAAGCTAA
GGGTTACGATGAATGACTGAATTTTGTGCAGCGAGATGCAGAAACATCTTTATTTCAAGATTCAAGACGCATGTCCTTGT
TCGGGGATATGTGCTGCAGCTCACCGCTCGATTTACAACTGTTCTACCATTGATCATGTTATCTTGAGAATTGACATAAC
TCAGCGTCGTGCTAAAATGAGCAGTCTCTCTGCAAGCATTTGAAGATGTTGAACATATTGTTGCTGAAGTACCCATCTTT
AGGATCACGACATATACCGTATAATTATAAGGTATTGGAGAGAGTGCTCAGGTCATCCCTGTTCCTCCTGGGCGACCTGT
TATGTAACCTATGTTTGAAGAAATAAATTATGCTAGACATATTTATGTACTC-------TTATGAGTATCAAATACTTGT
GTTATTCTGCAGAGTTTTGATTTCACACCAGAACCTCATCCTCTGGTAATTTTTGTCTTATTCTGCAGAGTTTTGGTGTC
TCATAATCTCATCTCTGCTATTAACATGTTCGGATTTCTGGAAGCAAACTGGTAATTTTTGCTCTATTATTGCTGTCATG
CCAACTAAAAACAGTCAACAGTTTCTGGGCCAGTAGGTAGGTGTGGCCCGAGTGCTTTGTAATTGTAAACTGGATGGTGT
GGTTTCATCAAATGGAATCGGGGTGAGAGCCCTTTTGATCTAAAAAAGGAAAAGAGCAGTCAACAGGTAACCCTATCTGT
TTCATTATTTGTTATTCAGTCTCATACTGTGGACTGAAATAGCTGATTAATGACTGCATGCAGAAGATGCATCCACAGAT
GCATGTGGCCTCGATGCCTTTATGCAGCTGGCTATTGCCGTTTTACTTAGTAACTATGCTCGCGTTCGCCCTTACATATG
GTGGTAGTTCGTGCAATTGCAATACCCTAGCACTTAACCATGGATACCATGATCGCTTTGTTGAATGATGATTGTTGGAA
TAAGTTTTATGTTTATTTCTCCTTGCGAATAATTTGTCTGTATTGCAATTTTTTTTGTTTAAAAGTGTGCTTTGGGCTTT
TTTGGCATTTGGAAAACTACAGGCCTGGCACTTCACTTATGTGGATCTGCTTTTGTTTTGTAATGCTTGAATGCCTAACA
ATTGG-CTTGGGAGCTTTTGTTTATCTCCACTCAATGATGAAATTGTCTGTATGTAAGGCAACTTTCTCATAATGAGATA
ATGCTGT--TAAGGATGTACAGCTCGGAAATTCATACTGGATTTATGTCATTTCGTAGACTGAAAATTTTCTGAATTC--
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>chr5D_14
-------------GGTACAGTTGAACCAATTAAGTTGCGTAGTTTACCATATGATGATTTTTGGTTATTATTTAAATCAT
GTGCATTTGGTGATGAGAACTATGAAAGGAATCAAAATCTTAGCATCATTGGATTGCAAATAGTAAAGAAGTTAAAGGGA
AACCCATTAGCAGCAGCAACAGTAGGGAAACTATTACGAAGGAGCCTTACTATTGATCATTGGTATAACATTCTGAAGAA
CGAAGATTGGAAATCTGTGCAACTCAGTGGAGGTATAATGTCTGCTCTGAAGCTTAGCTATGATCAGCTACCCTACAATT
TACAACAATGCTTCTCATTTTGTTCTTTATTCCCCGAGAAATATCAGTTCCTTGATGAGGAGCTGGTCCAAATTTGGATT
GCACAGGGATTTGTGAAGTGTGATAATTCAAGTAAGACACTTGAGGAGAAAGGATTTGACTATCTAGCTGATCTTGTGAA
CTTGGGCTTCTTTCAGCAAGTTGAAAGAGAAGAGACCGATCCAAACAGTCAACCTTGCTACATTATGTGTGATCTTATGC
ATGATCTTGCTAGGGAAGTCTCAAGAACTGAGTTTGCAACTATAGATGGCGTGCAGTACTGTGAGATGCTGCCAACTATA
CGCCATTTGTCAATAGTAAGTG----------------------------------------------------------
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>chr5D_15
--------------GTACAGTTGAACCATTCAAGTTATGTGATTTAGCATATGAGGAATTTTGGTCATTATTTAAATCAT
GTGCATTTGGTGATGAGAACTATGGCAGCAATCAAAATCTAAGCAGCATTGGACTGCGAATAGCAGAGAAGTTAAAGGGA
AACCCATTAGCAGCTGTAACAGTAGGCGGGCTATTAAGGATGAACCTTACCATTGATCACTGGAATAACATTCTGAAGAA
CGAAGATTGGAAATCTCTGCAACTAAATGGAGGCATAATGACTTCTTTGAAGCGTAGCTATGATCAGCTCCCCTACCATT
TACAACAATGCTTCTTATTTTGTTCTATATTCCCCGAGAGGTATCAGTTCCTTGATGAGGAATTGGTCCAAATTTGGATT
TCAATGGGATATGTGAAGTGTGACAATTCAAGTAAGAGGCTTGAGGAGAAAGGAATGGACTATTTGGCTGATCTTGTGAA
CTTGGGCTTCTTTGAGCAAGTTGAAAGAGAAGACACCTATCCAGGTAGTCAAACTTGCTATGTTATTTGCGGTCTTATGC
ATGATTTTGCGAGGGTTGTCTCAAGAACTGAGTGTGCAACTATAGATGGCCTGCAGTGCTGTGAGATGCTGCCAACTATA
CGCCATTTGTCAGTAGTAA-------------------------------------------------------------
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>SNPs
-------------------------------------S------------------------------------------
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--------------S-----------------------------------------S-----------------------
--------------------------S-----------------------------------------------------
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------------------------------------------------------------------------S-------
S-------------------------------------------------------------------------------
----------S--------------------S------------------------------------------------
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-------------------------------S--SS------------------------------------S-------
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-------------------------------------------------------S----------------S-------
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-------------------------------------------------------------S------------S-----
--------------------S-----S-----------------------------------------------------
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-------------------------------S------------------------------------------------
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---------------------------------S----------------------------------------------
----------------------------------------------------------S---------------------
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-----------------------------------------S--------------------------------------
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----------------------S---------------------------------------------------------
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------------------------------------------------------S-----SSSS-S--S-----------
---------------------------------S---------SS-S-S-SS-SS-SS-SSS------------------
---------S----------------S-----------------S---------------------------S--S----
-S----S------------S----S--------------S--S---------------------S------S--------
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--SS-S--------------------------S--------------S--------------------------------
-------SS---------------S---------S------S---------S-S------------S-----------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AGGCACACA
ATTTGCGTCTA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---
>reverse_1835
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTGTGC
TTAAATGACTGCCCTC----------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>forward_1336
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGTGGAAGCTATGGTTGCCT------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>reverse_3143
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------GGTCTCTCTGCAAGCATTTGA-------------------------------------
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---
