>input_sequence_40041
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ATGGTGGTGGCCACGGAGGAAATGGCGGTCTAC
TGCTTCGACACCCTCGTCGCCCACTACAGCGGCGAGCAGCCGCCGCCGCCCGCCTTCGAGGAGGGCGTCCAGTAAGCCTC
CTCC---TCCTCCCGGGT------CGCGATCGGCCTCTCCCCTCCACGCCGGAAAGGATGGCCTTTTACGGCGGTCGGGC
GTGGTTTCCGGTCAATTTCGCCGCGGATTTGGGGGAAGGGCGTGCCTTTT-ACGGCGGCGAGAGTGGATTTAGGCGTTTA
TTGGCTTGGATTAATCGAGTGTATCGGCTAATTTCAGATGCAGAGATTATCTTACGTAGAGAAGAGGAAATATTTTAAGA
AACACTCCCTCCCTTCACAAATATAAAGATGCTGCAACT---TTTTTTTTTGAATCGGATG--TATATAGACACGTTTTT
AGTGTGTTTGTTCACTCATTTCAGTCCACATGTAGTCCATATTGAAATATTCAAAACATCTTACATTTGTGAATGGAGGG
AGTAATATTTTTTGGCCTTAGCTCAAGGGACATAGGATGTTTTTGCATGTTTGGCCTTCCAGCTTTTGGTACTGGTTCCT
ATCCTGCCATTCGTAAAATGTTGTCAGAGTTCCATCACAATATTGTAGGTTTATTAAGAGTTAATACTGTTTAGCTAATA
CGGTAGTTTCTGGAAAAACGTGTTAGTGTTATCTGGAAAA-CATATATGTGCCATGT----CTGAGCTCAGTGGGTTAAA
TCTTGTAACTTCAGCCCACTGTTTGTCACCTGGAAGAAGGCTACCAATGGTTCCGAGCCACGCCTAAGGGGATGCATCGG
AACTTTGGAGCCCCGTCAGATTGTAAGCGGCTTCAAGGATTACGCGCTGACCAGGTAACTGTTGTAAGGACATAAGATTT
CCATGTGCTTGGTATCAATATTTCCAT------------ATGCACTACCAGGCAGTGTTGCACACTATCTATTAGTTGTA
TCATATGAACTAA-TAAGATCTCACTTGTAGTGCCCTGAGGGATCGGCGCTTTTCTCCGATACAGTCCAAAGAGCTGCCA
TATTTGGAATGCACAGTTTCTATATTGACCGAATACGAAACTGCACTCAACCACCTTGATTGGGAGGTTTGCTCCTACAT
GCTATTAATTGTAATTCCATTGGTGTCTATGGTCTTACAGCCAAC-ATTTGCATCAACGCTATTTTCTTATGAGACTGCA
GGTTGGAAAGCATGGTTTAATTATTGAGTTCACCGATCCTGACTATAATGTAAGACGGAGTGGAACTTATTTACCTGAGG
TTGCTGCCCATGAAGGTGAGTACTTATCAGCTACATATCCCTC---TAAGATCCCTCAGTTCTTAAAACTGCTACACACA
GTTACATAATCAGCCCAAAACCCGTTGAAAATTTCTATTGAGTTACAATGCCATTGTGTTGTTGAGAAATTTGGCTCCAC
ATGCCAATGTATTTTGGCTTTGTGTATCTCTATATAGAGTCTGCCATTTATCTAGCAAAATCAACCCTCCAGTCTGTACC
CTGTTTAGATATCA------------------------------------------------------------------
---------------------------------------AGTACTCATCACAGTTTACTCACTTGCTTGAATGTATAAAG
AACCTCAATGCAAGAGAGCCTCAAAGTGCTGGATATGTTAACTAAATGGGATTTCACAATATCACATGTCCATAT--GGA
TGAAATAAATAAAATTGAAGAGCACAGGAGAACAAAT-AAAAGCTTTTAATCAGTACATTCCCATTTTAGTTGCCTCTCT
CTCGATATATATAACATAGTCCTGAGATACCTGGCAGGATGGACACAACTAGAGACCATTGACTCGCTCATGAGGAAGGC
TGGCTACAATGGCACCATCACTGAGTCTTTGAGGAAGAAAATCCGCGTCACCCGCTACCAGAGTACCCTGTACACAATGC
ACTATGGTGAATATACTGCATATGTCAAGAAGAACAGAGGTGAAATTAACGGGGCACCCATAGTTAACGGATTCAAACCA
GGCCAGTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>chr1B_1_TraesCS1B01G206300
CCAGAGGGGATATGCTTATCACCAAAACTGTAATGCGGTCG----TCCGACTTTGTTGGATGGGGATTCGA------TGT
GGTTGGGTGGAACGTCGCCTTCAGGAGCGAAAGGTATAATATCTCGAGCTA--TTAGTCAGAGCTGCACTGCAACCAAGT
GCAGTTCAGTGACCCAGATTCTCCTCTTTCTTGGTAGCCTATATATATATATGCTACTTGTTCTGCTAGCTTTGTTTCTA
---GCTTGTTAATTTTTTTGGATGCTGCGTGGCGTGGAGCACACGTATGCTTGCTTGTTTGCAGTGCCATTGCTTGTTT-
--------GCCACCTGACTGTAAAATGTTTCCCTATAGATACGTGTCGACCTGCTGAGCCATTGCCTCGAACAGTTGGCG
AGAGCTGTAGACTGTAGAGTAT-------ATAGCACCATTTGAGGAGCTCCACCCCATGATAAAGAAAA-GTTTTACATA
T------CCTTTGTAAAATAATATAAGATCCAGTGATCTATATCCATTT-----------TATCCATTTTCCCGACAAGT
ATTTTCGGACGGAGGGAGT------------------------ACCAGCTAGAATTTGTAGCAGAATCAGCAACATTGAA
GGCTGACTATCTC--------TGCGCAAAAATTCAAAGTCTGAAGTAGTGTGATGCATCGTCTTAATGTGGCGAGTTAGT
GCGGATCCGGATTAACGTGGCAGAAATTTCATGGGCAGCAGTTTTAATTCTCCTGGGATTCATGATGCGCAAGCAAATAC
CCGTTACGCTCATGGCCACCCCCAGCGCTTTGCTTGCATAGGCCGTAAATAGCAGCAGCAGCCAGGGGCAGGAGTGACAA
TTCCTGAAAGGAAAGGAAAACTCCCCACGGAGACGCACGCAGCCCCCTG-TCTACTTGACTCGGAATCCAACAGCACGAA
ACGAACGCACCGCTCGCTTCCGCCTCTCCCCAACCTCCGTACCTTCCC----CCC-ACCACCGCGCCGTCCGGACCCGCC
GCCTCGGCTGAAAGACGGCCGGGCCCTCTCGGCGGCGGCGATCGACGATGGTGGTGGCCACGGAGGAAATGGCGGTCTAC
TGCTTCGACACCCTCGTCGCCCACTACAGCGGCGAGCAGCCGCCGCCGCCCGCCTTCGAGGAGGGCGTCCAGTAAGCCTC
CTCC---TCCTCCCGGGT------CGCGATCGGCCTCTCCCCTCCACGCCGGAAAGGATGGCCTTTTACGGCGGTCGGGC
GTGGTTTCCGGTCAATTTCGCCGCGGATTTGGGGGAAGGGCGTGCCTTTT-ACGGCGGCGAGAGTGGATTTAGGCGTTTA
TTGGCTTGGATTAATCGAGTGTATCGGCTAATTTCAGATGCAGAGATTATCTTACGTAGAGAAGAGGAAATATTTTAAGA
AACACTCCCTCCCTTCACAAATATAAAGATGCTGCAACT---TTTTTTTTTGAATCGGATG--TATATAGACACGTTTTT
AGTGTGTTTGTTCACTCATTTCAGTCCACATGTAGTCCATATTGAAATATTCAAAACATCTTACATTTGTGAATGGAGGG
AGTAATATTTTTTGGCCTTAGCTCAAGGGACATAGGATGTTTTTGCATGTTTGGCCTTCCAGCTTTTGGTACTGGTTCCT
ATCCTGCCATTCGTAAAATGTTGTCAGAGTTCCATCACAATATTGTAGGTTTATTAAGAGTTAATACTGTTTAGCTAATA
CGGTAGTTTCTGGAAAAACGTGTTAGTGTTATCTGGAAAA-CATATATGTGCCATGT----CTGAGCTCAGTGGGTTAAA
TCTTGTAACTTCAGCCCACTGTTTGTCACCTGGAAGAAGGCTACCAATGGTTCCGAGCCACGCCTAAGGGGATGCATCGG
AACTTTGGAGCCCCGTCAGATTGTAAGCGGCTTCAAGGATTACGCGCTGACCAGGTAACTGTTGTAAGGACATAAGATTT
CCATGTGCTTGGTATCAATATTTCCAT------------ATGCACTACCAGGCAGTGTTGCACACTATCTATTAGTTGTA
TCATATGAACTAA-TAAGATCTCACTTGTAGTGCCCTGAGGGATCGGCGCTTTTCTCCGATACAGTCCAAAGAGCTGCCA
TATTTGGAATGCACAGTTTCTATATTGACCGAATACGAAACTGCACTCAACCACCTTGATTGGGAGGTTTGCTCCTACAT
GCTATTAATTGTAATTCCATTGGTGTCTATGGTCTTACAGCCAAC-ATTTGCATCAACGCTATTTTCTTATGAGACTGCA
GGTTGGAAAGCATGGTTTAATTATTGAGTTCACCGATCCTGACTATAATGTAAGACGGAGTGGAACTTATTTACCTGAGG
TTGCTGCCCATGAAGGTGAGTACTTATCAGCTACATATCCCTC---TAAGATCCCTCAGTTCTTAAAACTGCTACACACA
GTTACATAATCAGCCCAAAACCCGTTGAAAATTTCTATTGAGTTACAATGCCATTGTGTTGTTGAGAAATTTGGCTCCAC
ATGCCAATGTATTTTGGCTTTGTGTATCTCTATATAGAGTCTGCCATTTATCTAGCAAAATCAACCCTCCAGTCTGTACC
CTGTTTAGATATCA------------------------------------------------------------------
---------------------------------------AGTACTCATCACAGTTTACTCACTTGCTTGAATGTATAAAG
AACCTCAATGCAAGAGAGCCTCAAAGTGCTGGATATGTTAACTAAATGGGATTTCACAATATCACATGTCCATAT--GGA
TGAAATAAATAAAATTGAAGAGCACAGGAGAACAAAT-AAAAGCTTTTAATCAGTACATTCCCATTTTAGTTGCCTCTCT
CTCGATATATATAACATAGTCCTGAGATACCTGGCAGGATGGACACAACTAGAGACCATTGACTCGCTCATGAGGAAGGC
TGGCTACAATGGCACCATCACTGAGTCTTTGAGGAAGAAAATCCGCGTCACCCGCTACCAGAGTACCCTGTACACAATGC
ACTATGGTGAATATACTGCATATGTCAAGAAGAACAGAGGTGAAATTAACGGGGCACCCATAGTTAACGGATTCAAACCA
GGCCAGTGATTTATCTGTACTGTAGCAGGTAATAACAACTATTTATAATTTGGCTTGGAAGGAATTGGTGTGAGAATTTG
TTCAAAAAAAATCAATTCTAGTCATTGATCTGCCATCATGCCATTTCATTCCAAAGAATGTAGAGTGCCATGTCAACGGC
CCTCATGTCGTTCTGGG--ACAAATTAAATGGTGATGGTTATGTATCTGTAAGCCTATGCACTTTGATTACAAATAATTG
CATGAAATTAATTGATTTAAGTTGTTCATTCACTGGTTATGATACTGGTAATCTTGTCTTGTTA---CTTGAGATTTGAT
CTGGAATGTTAGTCAAAAGCTCAAACATAACAA-TATTGACAAGAAAAATACAGGATGAACTCACAATCTGATGTTTGTT
GTGACCAACTGAAG-------------------------TGGTACTATGGCAGTGCCCTTCTGTTCCTTTCCACTCTAGA
CAACTGGAGGCAGGCACCTCACACAAAGAGCAATAACACTGCATGGTGTAGAACAGCAAATTATTTGTACCGGAAAGGAA
TTTGTTATACTTGGAAGCAACTTTGGATGGGTTGTCAGTGAGGTTACCTTGTGGCAACAGCTCTCGTGTGGAGTCGTATC
AAACAGGTAATTCCCACACAAGTGCCTTGGATGCGGGTAATCCCTAAGGGCCACCTAGTTATTTATCATCATGGAGCATA
TCAGAGATTTTGCCACATTTATATGGATTCAACATCATAGAAGATTTTACAGTTCTTGTCACATAAAATCTGAACCATTT
GTACTTAGCAGTACTGTTATTTGTGGAGCTTAATACATCGTTTCTCAGTGCAAGCATGCTCAGATTACTAATACATAGAT
GTAATATAGCAAGAAGTTTGAAAGCCAGTTCAGAGAGCCTCTTTCGCTACTACGACAACGTAGTCACCGTCTTCATCAAA
ATCTCTTCCCTCAGGGTTGAGTCTATCCATCTCTGGGAGATGGTCATACCCATCTTCTTCTCCAACACGCTCATCGGCAC
>chr1A_2
-CAAAGGGGATATGCTTATCACCAAAACTGTAATGCGATCGATCGTCCGACTTTGTTGGATGGGGATTCGA------TGT
GGTTGGGTGGAACGTCGCCTTCAGCGGCGAAAGGTATAATATCTTGAGCTATACTAGTCAGAGCTGTACTGCAACCAAGT
GCAGTTCAGTGCCCCAGATTCTCTTCTTTCTGGTAGCC---TATATATATATGCTACTTGTTCTGCTAGCTTTGTTTCTA
CTAGCTTGTTAAATTTT-TGGATGCTGCGTGGCGTGGAGCACACGTATGCTTGCTTGTTTGCAAACTTTTCTTGTTTGAT
CTGGGAACGCCACCCGACTGTAAAATGTTTCCTTATAGATACGTGTCGACCTGCTGAGCCATTGCCTCGAACAGTTGGCG
AGAGCTGTAGACTGTAGAGTTG-------TTAGCACCATTTGAGGAGCTCCACCCCATGATAAAGAAAA-GTTTTACATA
TATACCCCCTCTGTAAATTAATATAAGATCCAGTGATCTATATTCATTTCTCCGACAATATATCCATTTTCTCGACAAGT
ATTTTTGGAGGAAGGGAGTATCAGTTTAGTTTACAGAGGGAGTACCAGCTAGAATTTGTAGCAAAATCAGCAACATTGAA
GGCTGACTATCTC--------TGCGCAAAAATTCAAAGCCTGAAGTAGTGTGATGCATCGTATTAATGTGGCGAGTTAGT
GCGGATCCGGAATAACGTGGCAGAAATTTCATGGGCAGCAGTTTTAATTCTCCCGGGATTCATGACGCGCAAGCAAATAC
CCGTTACGCCCCTGGCTACCCCCCACCGCTTGCTTGCATAGGCCGTAAATACCAGCGGCAGCCAGGGGCAATCGTGACAA
TTCCGAAAAGGAAAGGAAAACT-CCCACGGAGACGCACGCATCCCCCTTCTCTACTTGACTCGGAATCCAACAGCACGAA
ACGAACGCACCGCTCGCTTCCGCCCCTCCCCAACCTCCGTACCCTCCCTCCCCCC-ACCGCCGCGCCGTCCGCGCCCGCC
GCCTCAGCTGAGCGACGGCCGGGCCCTCTCGGCGGCGGCCATCGACGATGGTGGTGGCCACGGAGGAAATGGCGGTCTAC
TGCTTCGACACCCTCGTCGCCCACTACAGCGGCGAGCAGCCGCCGCCGCCCGCCTTCGAGGAGGGCGTCCAGTAAGCCTC
CTCC---TCCTCCTCCTCCCAGGCCGCGATCGGCCTCTCCCCTCCACGCCGTAAAGGACGGGCTTTCACGGCGGTCTGGC
GTGGTTTCTGGTCAATTTCGCCGCGGATTTGGGGGAAGGGCTCGCC-TTTTACGGCGGCGAGAGTGGATTTGGGCGTTTG
CTGGCTTGGATTCATCGAGTGTATTCGCTAATATCAGATGCAGAGATTATCTTAAGTAGAGAAGAGGAAATA-----AGA
AACACTCCCTCCTTTCACAGATATAAAGATGCTGCAACTTTCTTTTTCT--GAATCAGATGTATATATAGACACGTTTTT
AGTGTGTGTTTTCACTCATTTCAGTCCACATCTAGTCCATATTGAAATATTCAAAACGTTTTATACTTGTGAATGGTGGG
AGTCCAC-----------------------------ATGTTTTTGCATGTTTGGCCTTCCAGCTTTTGGTACCGGTTCCT
ATCCTGCCATTCGTAAAATGTTGTCAGAGTTCCATCACAATATTGTAGGTTTATTAAGA-------CTGTTTAGCTAATA
AGGTAGTTTCTGAAAAAACGTGTTAGTGTTATCTGGAAAAACATATATGTACCATGT----CTGAGCTCAGTGGGTTAAA
TCTTGTAACTTCAGCCCACTGTTTGTCACCTGGAAGAAGGCTACCAATGGTTCCGAGCCACGCCTAAGGGGATGCATCGG
AACTTTGGAGCCCCGTCAGATTGTAAGCGGCTTCAAGGATTATGCGCTGACCAGGTAACTGTTGTAAGGACATAAGATTT
CCATGTGCTTGGTATCAATATTTTCAT------------GTGCGCTACCAGTCAGTGTTGCACACTATCTATTAGTTGGA
TCATATGAACCAACTAAGATCTCACTTGTAGTGCCCTGAGGGATCGGCGCTTTTCTCCGATACAGTCCAAAGAGCTGCCA
TATTTGGAATGCACAGTTTCTATATTGACTGAATACGAAACTGCACTCAACCACCTTGATTGGGAGGTTTGCTCCTACAT
GCTATTAACTCTAATTCCATTGGTGTCTATGGTCTTACAGCCAAAAAATTGCATCAACGCCATTTTCTTATGAGACTGCA
GGTTGGAAAGCATGGTTTAATTATTGAGTTCACCGATCCTGACTATAATGTAAGACGGAGTGGAACTTATTTACCTGAGG
TTGCTGCCCATGAAGGTGAGCACTTATCAGCTACATATCCCTCCACTAATATCCCTCAGTTCTTAAAACTGCTACACACA
GTTACATAATCAGCCCAAAACCCGTTGAAAATTTCTACTGAGTTACAATGCCATTGTGTTGTTGAGAAATTTGTCCCCAC
ATGCCAATGTATTTTGGCTTTGTGTATCTCTATATAGAGTCTGCCATTTAGCTAGCAAAATCAACCCTCCAGTCTGTACC
CTGTTTAGATATCA------------------------------------------------------------------
---------------------------------------AGTACTCATCGCAGTTTACTCACTTGCTTGAATGTATAAAG
AACCTCAATGCAAGAGAGCCTCAAAGTGCTGGATATGTTAACTTCATGGGATTTCGCAATATCACATGTCCATATATGGA
TGAAATAAATAAAATTGAAGAGCGCGGGAGAACAAATAAAAATCTTTTAATCAGTACATTCCCATTTTAGTTGCCTCTCT
CTCGATATATATAACATAGTCCTGAGATACCTGGCAGGATGGACACAACTAGAGACCATTGACTCGCTCATGAGGAAGGC
TGGCTATAATGGCACCATCACCGAGTCTTTGAGGAAGAAAATCCGCGTCACCCGCTACCAGAGTACCCTGTACACCATGC
ACTATGGTGAATATACTGCATATGTCAAGAAGAACAGAGGTGAAATTAACGGGGCACCCATAGTTAATGGATTCAAACCA
GGCCAGTGATTTATCTGTACTGTAGCAGGTAATA-CAACTATTTTTAATTTGGCTTGGAAGGAATTGGTGTGAGAATTTG
TTCG-AAAAAATCAACTCTAGTCATTGATCTGCCATCATGCCATTTCATTCCAAAGAATGTGGGGTGCCATGTCAACGGC
CCTCATGTCGTTCTGGG--ACAAATTAAATGGTGATGGTTATGTATCTGTAAGCCTATGCACTTTGATTACAAATAATTG
TGTGAAATTAATTGATTTAAGTTGTTCATTCACTGGTTATGATACCAGTAATCTTGTCTTGTTACTACTTGAGATTTGAT
CTGGAATGTTAGTCAAAAGCTCAAACATAACAATTATTGCCAAGAAAAATACAGGATGAACTCACAATCTGATGTTTGTT
GTGACCAACTGAAGCATGAAGAACAATTCTGAAATTACTTGGTACTATGGCAGTGCCCTTCTGTTCCTTTCCACTCTAGA
CAACTGGAGGCAGGCACCTCACACAAAGAGCAATAACACTGCATTGTGTAGAACAGCAAATTATTTATGCTGGAAAGGAA
TTT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>chr1D_2
-CAAAGGGGATATGCTTATCATCAAAACTGTAATG----CGATCGTCCGACTTTGTTGGATGGGATTGGGATTCGATTGT
GGTTGGGTGGGACGTCGCCTTCAGCAGCGAAAGGTATAATATCTTGAGCTA--CTAGTCAGAGCTGCACTGCAACCAAGT
GCAGTTCAGTGACCCAGATTCTCTTCTTTCTGCTAGCC---TATATATATGG--TACTTGTTCTGCTAGCTTTGTTTCTA
---GCTTGTTAATTTTT-TGGATGCTGCGTGGCGTGGAGCACACGTATGCTTGCTTGTTTGCAAACTTTTTTTGTTTGAT
TTAGGAACGCCACCTGACTGTAACATGTTTTCCTAGAAATACGTGTCGACCTGCTGAGCCATTGGCTC-AACAGTTGGCG
AGAGCTGTAGACTGTAGAGAGTAGAGTAGATAGCACCATTTGAGCAGCTCCACCCCATGATAAAGAAAAAGTTTTACATA
TATACTCCCTTTGAAAACTAATATAAGATCCAGTGATCTATAT--------------------CCATTTTCCCGACAAGT
ATTTTCGGACAGAGGGAGTA------------------------CCAGCTAGAATTTGTAACAAAATCAGCAACATTGAA
GGCTAAAGTGGCGAGTTAGTGTGCGCCAAAATTCAAAGTCTGAAGTAGTGTGATCCATCGTCTTAATGTGGCGAGTTAGT
GCGGATCCGGAGTAACGTGGCAGAAATTTGATGGGCAGCAGTTTTAATTCTCCTGGGATTCATGATGCGCAAGCAAATAC
CCGTTACGCCCCTGCCTACCCCCCACTGCCTGCTAGCATAGGCCGTAAATACCAGCGGAAGCCAGGGGCAGGCGTGACAA
TTCCGGAAAGGAAAGGAAAACC-CCCACGGAGACGCACGCAGCCCTCCC--CTACTTGACTCGGAATCCAACAGCACGAA
ACGAACGCACCGCTCGCTTCCGCCCCTCCCCAACCTGCGTACCCTCCC----CCCCACCGCCGCGCCGC---------CC
GCCTCGGCTGAACGACGGCCGGGCCCTCTCGGCGGCGGCGATCGACGATGGTGGTGGCCACGGAGGAAATGGCGGTCTAC
TGCTTCGACACCCTCGTCGCCCACTACAGCGGCGAGCAGCCGCCGCCGCCCGCCTTCGAGGAGGGCGTCCAGTAAGCCTC
CTCCTCATCCTCCCGGGT------CGCGATCGGCCTCTCCCCTCCACGCCGTAAAGGATGGGCTATCACGGCGGTCTGGC
GTGGTTTCCGGTCAATTTCGCCGCGGATTTGGGGGAAGGGCGTGCCTTTTTACGGCGGCGAGAGTGGATTTGGGTGTTTA
TTGGCTTGGATTCGTCGAGTGTATTCGCTAATTTCAGATGCAGAGATTATCTTAAGTAGATAGGAGGAAATATTTTAAGA
AACACTCCTTCCCTTCACAAATGTAAAGATGTTGCAACT---TTTTTTT--GAATCGGATG--TATATAGACACGTTTTT
AGTGTGTTTGTTCACTCATTTCAGTCCACATGTAGTCCATATCGAAATATTCAAAACATCTTATATTTGTGAATGGAGGG
AGTAATATTTTTT---------------------------------------GGCCTTCCAGCTTTTGGTACTGGTTCAT
ATCCTGCCATTCGTAAAATGTCGTCAGAGTTCCATCACAGTATTGTAGGTTTATTAAGG-------CCGTTTAGCTAATA
CGGTAGTTTCTGAAAAAACGTTTTAGTGTTATCTGGCAAAACATATATATACATACCATGCCTGAGCTCAGTGGGTTAAA
TCTTGTAACTTCAGCCCACTGTTTGTCACCTGGAAGAAGGCTACCAATGGTTCCGAGCCACGCCTAAGGGGATGCATTGG
AACTTTGGAGCCCCGTCAGATTGTAAGTGGCTTCAAGGATTATGCGCTGACAAGGTAACTGTTCCAAGGACATAGGATTT
CCATGTGCTTAGTATCAATATTTCCCAGAAGATTTTCTAGTGCACTACCAGGAAGTGTCACACACTATCTATTGATTGGA
TTATATTAACTACACAAGATCTCACTTGTAGTGCCCTGAGGGATCGGCGCTTTTCTCCGATACAGTCCAAAGAGCTGCCA
TATTTGGAATGCACAGTTTCTATATTGACTGAATACGAAACTGCACTCAACCACCTTGATTGGGAGGTTTGCTCCTACAT
GCTATTAACTCTAATTCCATTGGTGTCTATGGTCTTACAGCCAAAAATTCGCATCAACGCTATTTTCTTATGAGACTGCA
GGTTGGAAAGCATGGTTTAATTATTGAGTTCACCGATCCTGACTATAATGTAAGACGGAGTGGAACTTATTTACCTGAGG
TTGCTGCCCATGAAGGTGAGCACTTATCAGCTACATATCCCTCCATTAATATCCCTCAGTTCTTAAAACTGCTATACACA
GTTACATAATCAGCCCAAAACCTGTTGAAAATTTCTATTGAGTTACAATGCCATTGTGTTGTTGAGAAATTTGTCTCCAC
----------ATTTTGGCTTTGTGTATCTCTATTTAGAGTCTGCCATTTATCTAGCAAAATCAACCCTCCAGTCTGTACC
CTGTTTAGATATCAAGTACTACCTCCGTCCGAAAAAGCTTGTCCCTCAAATGGATGTATCTAGCACTAACTTGGTGCTAA
ATACATTCATTTGAGGGACAAGCTTTTTCGGACGGAGGGAGTACTCATCACAGTTTACTCACTTGCTTGAATGTATAAAG
AACCTCGATGCAAGAGAGCCTCCAAGTGCCGGATATGTTAACTTCATGGGATTTCACAATATCACATGTCCATAT--GGA
TGAAATAAATAAAATTGAAGAGCACGGGAGAACAAATAAAAAGCTTTTAATCAATACATTCCCATTTTAGTTGCCTCTCT
CTCGATATATATAACATAGTCCTGAGATACCTGGCAGGATGGACACAACTAGAGACCATTGACTCGCTCATGAGGAAGGC
TGGCTACAATGGCACCATCACTGAGTCTTTGAGGAAGAAAATCCGCGTCACCCGCTACCAGAGTACCCTGTACACCATGC
ACTATGGTGAATATACTGCATATGTCAAGAAGAACAGAGGTGAAATTAACGGGGAACCCATAGTTAATGGATTCAAACCA
GGCCAGTGATTTATCTGTACTGTAGCAGGTACTA-CAACTATTTATAATTTGGCTTGGAAGGAATTGGCGTGAGAATTAG
TTTAAAACAAATCAATTCTAGTCATTGATCTGCCATCATGCCATTTCATTCCAAAGAATGTGGGGTGCCATGTCAACAGC
CCTCGTGTCATTCTGGGACACAAATTAAATGGTGATGGTTATGTATCTGTAAGCATATGCACTTTGATTACAAATAATTG
TGTGAAATTAATTGATTTAAATTGTTCATTCACTGGTTATGATACCAGTAATCTTGTCTTGTTG---CTTGAGATTTGAT
CTGGAATCTTAGTCAAAAGCTCAAACATAACAT-TATTGACAAGAAAAATACAGGATGAACTCACAATCTGATGTTTGTT
GTGACCAACTGAAGCATGTAGAACAATTCTGAAATTACTTGGTACTATGGCAGTGCCCTTCTGTTCCTTTCCACTCTAGA
CAACTGGAGGCAGGCACCTCACACAAAGAGCAATAACACTGCATTGTGTAGAACAGCAAATTATTTGTACTGGAAAGGAA
TTTGTTATACTTGCAAGCAACCTTGGATGGGTAGTCAGTCAGGTTACCTTGCAGCAACGGCTCTCATTCGGAGTTGTATC
AAACGGGTAATTTCCACACAAGTTCCTTGGATGCGGATAATCCCTAAGGGCCACCTAGATATTTATCATCATGGAGCATA
TCAGAGATTTTGCCACATTTATATGGATTCAACATCATAAAAGATTTAACAGTTCTTGAAACACAAAATCTGAACCATTT
GTACTTGGCAGTACTGTTATTTGTGGAGCTTAATACATCATTTCTCAGTGCAAGCATGCTCAGATTACTAATACATAGAT
GTAATATAGCAAGAAGTTGGAAAGCCAGTTCAGAGAGCCTCTTTCGCTACTACGACAACGTAGTCACCGTCTTCATCAAA
ATCACTTCCTTCAGGGCTGAGTCTATCCATCTCTGGGAGATGGTCATACCCATCTTC---TCCAACACGCTCATCGGCAC
>SNPs
S--S---------------------------------S------------------------------------------
------------------------S-------------------S--------S--------------------------
-----------------------S-------S-SSSS-SSS---------------------------------------
-----------------S---------------------------------------------SSSSSS--SSS-S-SS-
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-----------------S-------------------------S------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------S-S----S------SS-SSS----------------------S----S---------------S-------
----S-----------------S-------------------------S-------------------------------
------------------------S------------------S---------------S------------SS------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S---------S----S---------S---
-----------------------------------------------------------------------S--------
------------S-----------SS----------------------------S-------------------------
-------------------------------------------------SS-----------------------------
---------------------------------------------------------------S----------------
-------------SSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------
-----------------------------------------------------------SSSSSSS--------------
------------S-------------------------------------S-----------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
---------------------------------------S--------------------------------------S-
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------S-S---------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------S----------------------------S------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------SS-----------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-------------------------------------------------------------------S------------
----------------------------------S---------------------------------------------
-------------------------------------------------------------S-S----------------
--------------------------------------------------------------------------------
SS-------------------------------------------SS---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-------------------------S---------
-------------S-------S----------S------S-----------SS-----S------S-SS-----S-----
----S-------S----------S------------S---------------------S---------------------
---------------------------------------S-------S----------SS---S----------------
------S--------------------------------S----------------------------------------
------------------S-------------------------------------------------------------
---S-----S------S----------------------------------------SSS--------------------
>forward_309
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CTTGCTTGTTTGCAGTGCCA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>reverse_1811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GCCATGTCTGAGCTCAGTGG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>forward_885
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GGGCAGGAGTGACAA
TTCCT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>reverse_1963
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CGCGCTGACCAGGTAACTG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>forward_1352
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GGCGGCGAGAGTGGATTTA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>reverse_3188
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CGGATTCAAACCA
GGCCAGT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>forward_2421
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GCTGCCCATGAAGGTGAGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>reverse_3819
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AGCTCTCGTGTGGAGTCGTA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
