>input_sequence_40001
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--ATGGAGTTCTGGCCCGAGTTCTTGGCGAGCAGCGGCGGGCATGAGTTCGTGGCGGGAGGCGTCGGCGGCATGGCCGGC
GTGCTGGCGGGCCACCCGCTGGACACGCTCCGCATCCGCCTGCAGCAGCCGCCGCGGCCCGTGAGCCCCGGGATCACCGT
CGCGCGGGTGGCGCGCCCGCCTTCCGCCGTCGCGCTGCTGCGCGGCATCCTCCGCGCCGAGGGCCCCGGCGCGCTCTACC
GCGGCATGGGCGCGCCACTCGCCTCCGTCGCCTTCCAGGTGAGCCAGCCAGGTTTAGGAACGTAAAATGTTTCACGCAAT
CA----GGCCGCCCGGCGTGTGGAGTCCATGAGATCGTGAGTTCTTTGGTCACGTCTTCCTTTTTCCAAAAGTTTGCAAA
--------TATCGTTTTCGAGAAGAAAGT--GTTCAAACAGATGGTACTACTACACGACATGAACATCTATGACACGACT
AAGTAAATGAGCTAGTT-TTTTTAGGATAGTAAATGAGCTAGCTATCATATAGGACGGCGTCACTTTACGTGCTACTACG
AAAAGATCATTTGTTTCTCCTCTTGCTTGGCGCATTTGAAGTCTTGTAGTTTTGCATCCTCCGCCTTTGCTTCCTTTCCC
TGTATCGTTGCGTCGCGCTCATTCCGGTGGTTCACATGGCGTGGCGGCCTTTCTGGTCTGTGAAGTTGTGCTCGACAATA
AATGCTGTAAAGTACGATGATGCACATGTTTCATGTTTGCTCGTGAGATTAGGCTTGCGTCGGAACGTACTATGCTGCCT
A------------------------------ACATTGGCCATTTGGCC--------------------------------
-AACGACATTTGCAAGTCTGCACTCCG-----TA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ACAGTGCGTGTG-CTGTATTTGCAGTAGA---------ATCATGTCAGAAACTGAGCTCAGAATTTTATGTCGCAGAAT
GCAATGGTCTTCCAAGTCTACGCGATCCTCTCGCGGTCGCTGGATCGACGGATGTCCACCTCCGAGCCGCCCTCCTACAC
AAGCGTGGCACTCGCCGGCGTGGGCACCGGGGCGCTGCAGACGCTGATCCTGTCCCCCGTGGAGCTCGTCAAGATCAGGC
TGCAGCTGGAGGCGGCGGGGCGGAAGCGCCAGGGGCCGGTGGACATGGTCCGGGACATCATGCGGAGGGAGGGCCTGCGC
GGCATATACCGCGGGCTCACGGTCACCGCGCTCCGGGACGCGCCGTCGCACGGCGTCTACTTCTGGACGTACGAGTACGC
GCGGGAGCGGCTGCACCCGGGCTGCCGGAGCACGGGGCAAGAGAGCCTCGCGACCATGCTCGTGTCCGGCGGCCTAGCCG
GGGTCGCCAGCTGGGTCTGCTGCTACCCGCTGGACGTGGTGAAGTCGCGGCTGCAGGCGCAGACGCAGACGCACCCGCCG
TCGCCGAGGTACCGCGGCGTCGTCGACTGCTTCCGGAAGAGCGTGAGGGAGGAGGGGCTCCCGGTGCTGTGGCGCGGCCT
CGGCACGGCCGTGGCGCGGGCGTTCGTCGTCAACGGCGCCATCTTCTCGGCCTACGAGCTGGCCCTGCGATTCTTGGTGC
GCAACAACGGTCGCCAGACGCTGGTAATGGAGGAGATGAAGTGCCATGATCACTGATGCGAATGCGATTCCATCCGTTCG
CAGCAATGGAGTTGCCCGCAGCGGCATGCGCACGTCCGCGGGGTTGTACATAGGATTATAATCCATGGGACTGGGAATCG
GTCGTGGAGATCATACCATTTGC-----AGGTGTGGTTTTCAGAGCGTAGTAGCAG--TTAGTTGCTTCAGAATTCACAG
AAATTGGCACTATAGGTGTGCTTGTTGACGACGACGATCAATTCTCCAATGTCTGGGGAGAAGCTATTACATGTATA---
-GTACAAGAA-------AATCAATGGAGATCATGAGTCAATGACCAGGTGTGGGACCAATGAACTGCGATCAGAATTCTT
GTCTGACGGGAGATTGTGTTCTCAGCCATGGG----------------------------ATCCCATGTATGCTTTGCTC
ACGTTGCG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>chr3D_1_TraesCS3D01G157800
GTAAACACAGGCAACCAAACGGGTAAAATTCTTTCCGCGCGGGTCAGGCTGGGCCATATGCAGGCAACCAAACACGCCCA
TAATGTTGCTCAATACTATCAACAAAATGCAAACATGAAGTACTCCCTCCGCTTCCATAATTTTTTGTTGTGCCTTTAGT
TCGAATTATGGAGCGAAGGGACTAGGG---AACAAAAAGCAGGCTACATTCTAAATGGGCGTGATACACTGGCACGTCAT
GGGGCAAATACGACG-----GCCTGCGCCTGCCCCATACGCAAGCCTCGGCAAATACTCCACTCCG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CTTCCACTACACTAGGC------TAGCAAAGCAGAGCAGCAACGTATTCAGGTTGGGACGGACGCTCGGGAA
CAGAGCGCTTGTCCGTTTCCTTCGCGCTCACTCCCCGTGCCCACAAATACCGCCACCCGCCATCTCTCTCCCAGTACATG
TCCTCACTTCTCTTCTCGCTCTTCT------CCTCCTCCTCCCGCGGTGCCATTGCCGCCCGTGCCCTACCAACCCACCC
ACGCGGAAAGCATTCGCTTCACCCACCGCCGCACGCGCCGCGCGTCAGGCCGGCCGTCCGTGTTCCTCGGCTCCGCCCCT
GCTCTCCAACGAGTCCGTGCGGATAGAGAGCCCTTTTCCGCTTTTGGAATCGGCACCAAAAGGGAAGCGGGAGATCCGGG
TGCTTTTCTTGGCCGGCCGATCCTGCTGGTATATACGATCCGGTCCATTCCCCCGCGCGAGGGCGCCCGAGAGAGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGATGGTCGTCGTCGTCGTCGTTTGGCCGGACCGTGT
CGATGGAGTTCTGGCCCGAGTTCTTGGCGAGCAGCGGCGGGCATGAGTTCGTGGCGGGAGGCGTCGGCGGCATGGCCGGC
GTGCTGGCGGGCCACCCGCTGGACACGCTCCGCATCCGCCTGCAGCAGCCGCCGCGGCCCGTGAGCCCCGGGATCACCGT
CGCGCGGGTGGCGCGCCCGCCTTCCGCCGTCGCGCTGCTGCGCGGCATCCTCCGCGCCGAGGGCCCCGGCGCGCTCTACC
GCGGCATGGGCGCGCCACTCGCCTCCGTCGCCTTCCAGGTGAGCCAGCCAGGTTTAGGAACGTAAAATGTTTCACGCAAT
CA----GGCCGCCCGGCGTGTGGAGTCCATGAGATCGTGAGTTCTTTGGTCACGTCTTCCTTTTTCCAAAAGTTTGCAAA
--------TATCGTTTTCGAGAAGAAAGT--GTTCAAACAGATGGTACTACTACACGACATGAACATCTATGACACGACT
AAGTAAATGAGCTAGTT-TTTTTAGGATAGTAAATGAGCTAGCTATCATATAGGACGGCGTCACTTTACGTGCTACTACG
AAAAGATCATTTGTTTCTCCTCTTGCTTGGCGCATTTGAAGTCTTGTAGTTTTGCATCCTCCGCCTTTGCTTCCTTTCCC
TGTATCGTTGCGTCGCGCTCATTCCGGTGGTTCACATGGCGTGGCGGCCTTTCTGGTCTGTGAAGTTGTGCTCGACAATA
AATGCTGTAAAGTACGATGATGCACATGTTTCATGTTTGCTCGTGAGATTAGGCTTGCGTCGGAACGTACTATGCTGCCT
A------------------------------ACATTGGCCATTTGGCC--------------------------------
-AACGACATTTGCAAGTCTGCACTCCG-----TA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ACAGTGCGTGTG-CTGTATTTGCAGTAGA---------ATCATGTCAGAAACTGAGCTCAGAATTTTATGTCGCAGAAT
GCAATGGTCTTCCAAGTCTACGCGATCCTCTCGCGGTCGCTGGATCGACGGATGTCCACCTCCGAGCCGCCCTCCTACAC
AAGCGTGGCACTCGCCGGCGTGGGCACCGGGGCGCTGCAGACGCTGATCCTGTCCCCCGTGGAGCTCGTCAAGATCAGGC
TGCAGCTGGAGGCGGCGGGGCGGAAGCGCCAGGGGCCGGTGGACATGGTCCGGGACATCATGCGGAGGGAGGGCCTGCGC
GGCATATACCGCGGGCTCACGGTCACCGCGCTCCGGGACGCGCCGTCGCACGGCGTCTACTTCTGGACGTACGAGTACGC
GCGGGAGCGGCTGCACCCGGGCTGCCGGAGCACGGGGCAAGAGAGCCTCGCGACCATGCTCGTGTCCGGCGGCCTAGCCG
GGGTCGCCAGCTGGGTCTGCTGCTACCCGCTGGACGTGGTGAAGTCGCGGCTGCAGGCGCAGACGCAGACGCACCCGCCG
TCGCCGAGGTACCGCGGCGTCGTCGACTGCTTCCGGAAGAGCGTGAGGGAGGAGGGGCTCCCGGTGCTGTGGCGCGGCCT
CGGCACGGCCGTGGCGCGGGCGTTCGTCGTCAACGGCGCCATCTTCTCGGCCTACGAGCTGGCCCTGCGATTCTTGGTGC
GCAACAACGGTCGCCAGACGCTGGTAATGGAGGAGATGAAGTGCCATGATCACTGATGCGAATGCGATTCCATCCGTTCG
CAGCAATGGAGTTGCCCGCAGCGGCATGCGCACGTCCGCGGGGTTGTACATAGGATTATAATCCATGGGACTGGGAATCG
GTCGTGGAGATCATACCATTTGC-----AGGTGTGGTTTTCAGAGCGTAGTAGCAG--TTAGTTGCTTCAGAATTCACAG
AAATTGGCACTATAGGTGTGCTTGTTGACGACGACGATCAATTCTCCAATGTCTGGGGAGAAGCTATTACATGTATA---
-GTACAAGAA-------AATCAATGGAGATCATGAGTCAATGACCAGGTGTGGGACCAATGAACTGCGATCAGAATTCTT
GTCTGACGGGAGATTGTGTTCTCAGCCATGGG----------------------------ATCCCATGTATGCTTTGCTC
ACGTTGCGTGGATGGCTCCAGAGTCATGAATTCCCTCGTAAGCACGAGCGCGACGGTGCAAGTGATGCATGGAAATGCAG
ATTTTTCCTGGTAGCTCTCAGTGGCAAGTTTTCACAGGAAGAGGGCAAAAACGGATTAGCTTTCTA--CGGAGCACTTGT
GGACGATACAGAATTGCCATTTCTGTGGAATCCTGCGCCACTACTTGCGGTAGATACCGTGTGTTTACCACAGCCAAACA
GGTGT-GATTCCAATTCCAGATGGGATCACGCTGATTTGATGTTGAGGTCCCCGTCTCCCGGATCCCTTCCTAGGAGAGG
GGAGCCCCACGTATAGAACGACGCAGTTAAGTAAAACACTCAGGGCGTGTTTGGTTAGTTTCTCCACCGG-CCTGACTAG
GAGAGCAAAAATGAGCCAG---GAGCAGGGCATGGATAAGAAAAAACAGGGTCAAAAA-GTAGATGACTAGTTGATTGGT
TGCCTGCATTAGGGGTTTTGTCATCGGGATGCAATTTTCACCCGGCATTTGGTTGCATACATGCATATGATTAGGAGTTA
ACAACAAAGCTTAACACCCACCAGGTTTGGCATCTCATTTCGTCGAACACGTTGAGCGCGCCGGAGGTTCCTCTGCCCAT
CATGTCCACCGCCAGCTCCCGGCGACCATGGGCACGCTCGCCACCTGGACTCGTCCACGCACGGCACCGTGGCCGCGCCC
GGCTCGTGGCCGTGGACGCGCCCAGCTCCGGCGGCAGCCGCCCCGTGATGTTGTTCTGCAGCAGCCTGAAGCCCCGTACA
CTTCAGAGTTCATAGAGCACACAAGCAAGCAAGAAGACTAAGAAGTAGCAGCCTGAAGCCCCGTGCACTTCAGAGTTCAG
AGAACACACAAGTAAGCAAGAAGACCAAGAAGCAGCAGCCGCGCCGGACGCTCGCCCATGAGCTCCAGCCGCTCCAGGTC
GCGGTGTCGTGCTTTCCCTAATCATTTGATGGATGTGGAGGAGTGTGCGAGAGAAT
>chr3A_81
TAATGTTGT-----------------------------------------------------------------------
---------TCAATACTATCAACAAAATGCAAACATGAAGTACTCCCTCCG-TTCCATAATTTTTTGTTGTGC-TTTAGT
TCGAATCATGGAACGAAGGGAGTAGAATGAAACAAAAAGCAGGCTACATTCTAAATGGGCGTGCTACACTGGCACGTCAT
GGGGCAAATACGACG-----GTT-----CTGCCCCATACGCAAGCCTCGGCAAATACTCCACTCCACTTCCAGGCAGAAT
TGACAAATTTGACCTTGAAGTGAAAGTATTTCACAAACTAAATTATTTTTGAAAATATTTCACATCACTTTTTGTGCAGC
TCCCAACAGTAAGGCGCTGCACTCTACTGTGCAACTCCTTACAGTTAGGCGCTGCACAGTGTAGTGCAGCTCCTTACAGC
TAGGCGTTGCACAGTATGGCGCATGTGGGTTAGGCGCTGCACGATAAGAGTGTAACGCTTTGCTGTTGGGCGCTGCACAT
TAGAGGTCAGCTGGATGAAATACTTTCAAACATAGTTTAGTTTGTGAAATAGTTTCGTCCTGAAGTCAAATTTATGTTTT
TTGCCCCACTTCCACTACACTAGGCAAAGCATAGCAGAGCAGAGCAGCAACGTATTCAGGTTGGGACGGACGCTCGGGAA
CAGAGCGCTTGTCCGTTTCCATGGCGCTCACTCCCCGTGCCCACAAATACCGCCACCCGCCATCCCTCTCCCAGTACGTG
TCCTCACTTCTCTTCTCGCTCTTCTTCTTCTCCTCCTCCTCCCGCCGTGCCATTGCCGCCCGTGCCCTACCAATCCACCC
ACGCGGAAAGCGTTCGCTTCCTCCACCGCCGCACGCGCCGCTCGTCAGGCCGGCCGTCCGTTTTCCTCGGTTCCTCCCCT
GCTCTCCGAAGAGTCCGTGCGGATAGAGAGTCCTTTTCCGCATTTGGAATCGGCACCAAAAGGGAAGCGGGAGATCCGGG
TGCTTTTCTTGGCCGGCCGATCCTGCCGGTATATACGATCCGGTCCATTACCCCGCGCGAGGGCGCCCGAGAGAGCGGCG
ATCCGAGGGGGGCGGTGGTCTGGTCC------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GTGGATGGTCGTCGTCGTCGTCGTTTGGCCGGACCGTGT
CGATGGAGTTCTGGCCCGAGTTCTTGGCGAGCAGCGGCGGGCATGAGTTCGTGGCGGGGGGCGTCGGCGGCATGGCCGGC
GTGCTGGCGGGCCACCCACTGGACACGCTCCGCATCCGCCTGCAGCAGCCGCCGCGGCCCGTGAGCCCCGGGATCACCGC
CGCGCGGGTGGTGCGCCCGCCCTCCGCCGTCGCGCTACTGCGCGGCATCCTCCGCGCCGAGGGCCCCTCCGCGCTCTACC
GCGGCATGGCCGCGCCCCTCGCCTCCGTCGCCTTCCAGGTGAGCCAGACAGTTTTAGGAACGTAAAATGTTTCACGCAAT
TA----GGCCGGCCGGCGTGTGGAGTCCATGAGATCGTGAGTTCTTTGGCCACGTCTTCCTTTTTCCAATTATAAAGTTT
GCTTTAGGTATCGTTTTCGCGAAGAAAGTTTGTTCAAACAGA---------TACACGACACGAAAATCTATGACACGACT
AAGTAAATGAGTTAGCCATTG-----------------------------TAGGACGGCGTCACTTTACAAAAAAAA---
AAAAGATCA-------------TTGCTTGTCGCATTTGAACT--------------------------------------
TGTATCGTTGCGTCGCGCTCATTCCGGTGGTTCACATGGCGTGGCGGCCTTTCTGGTCTGTGAAGTTGTGGTCGACAATA
AATGCTGTAACGTACGACGATGAACACGTTTCATGTTTGCTCGT--GATTAGGCTTGCGTCGCAACGTACGATGCTGCAT
AACAATTTTTTTTTCGGGAAGATGCTGCCTAACATTGGCCATTTGGCC--------------------------------
-AATGACATTTGCAAGCCTGCACTTGAACACATA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ACAGTGCCTGTG-CTGTATTTGCGGTAGAAAACTAGAAATCATGTCAGAAACTGAGTTCAAAATTTTATGTCGCAGAAT
GCAATGGTCTTCCAAGTCTACGCGATCCTCTCGCGGTCGCTGGATCGACGGATGTCCACCTCCGAGCCCCCCTCCTACAC
AAGCGTGGCACTCGCCGGCGTGGGCACGGGAGCGCTGCAGACGCTGATCCTGTCCCCCGTGGAGCTCGTCAAGATCAGGC
TGCAGCTGGAGGCGGCGGGGCGGAAGCGCCAGGGGCCGGTGGACATGGCCCGGGACATCATGCGGAGGGAGGGCCTGCGC
GGCATATACCGCGGGCTCACGGTCACCGCGCTCCGGGACGCGCCGTCGCACGGCGTCTACTTCTGGACGTACGAGTACGC
GCGGGAGCGGCTGCACCCGGGCTGCCGGAGCACGGGGCAGGAGAGCCTCGCCACCATGCTCGTGTCCGGCGGCCTCGCGG
GCGTCGCCAGCTGGGTCTGCTGCTACCCGCTGGACGTGGTGAAGTCGAGGCTGCAGGCGCAGACGCAGACGCACCCGCCC
TCGCCGAGGTACCGCGGCGTCGTCGACTGCTTCCGGAAGAGCGTGAGGGAGGAGGGGCTCCCGGTGCTGTGGCGCGGCCT
CGGCACGGCCGTGGCGCGGGCTTTCGTCGTCAACGGCGCCATCTTCTCGGCCTACGAGCTGGCCCTGCGCTTCTTGGTGC
GCAACAACGGCCGCCAGACGCTGGTGATGGAGGAGATGAAGTGCCATGATCACTGATGCCAATGTGAATCCATCCGTTTG
CAGCAATGGAGTTGCCCACAGCGGCATGCGCACGTCCGCGGGGTTGTACATAGGCTAGTAATCCATGGGACTGGGAATCC
GTCATGGAGATCATACCATTTACAACAAAGGTGTGGTTTTCAGAGCGTAGTAGCAG--TTAGTTGCTTCAGAATTCACAG
AACTTGGCACTATAGATGTGCTTGTTGACGACGACGATCAATTCTCCAATGTCTGGGGAGATGCTATTACATGTATA---
-GTAGTACAAGAAAATCAATCAATGAAGATCATGAGTCAATGACCAGGTGTGGGACCAATGAACTGCGATCAGAATTCTT
GTCTGACGGGAGATAATGTC----------------------------------------------TGCATGCTTTGCTC
ACGTTGCATGGATGGCTCCAGAGTCGTGAATTCCCTTGTAAACACGAGCGCGACAGTGCAAGTGATGCATGGAAATGCAG
ATTTTTGCTGGTAGCTCTCAGTGGCAAGTTTTCACAGCAAGAGGGCAAAAACGGACTAGCTTTCTA--CGGAGCACTTGT
GGACGATACAGAATTGCCATTTGTGTGGAATCCTGCGCCACTACTTGCGGTAGATTCCGTGCGTTTACCACAGCCAGACA
GGTGTAGATTCCGATTCCAGATGGGTTCACGCTGATTTGAGTTTGAGGTCCCGGTCTCCCGGATCCCTG----GGAGAGG
AGAACCCCGGGTATAGAACGACGCAGTTAAGTAAAACACTCA--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------
>chr3B_208
CTAAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TGGGCGTGATACACTGGCACGTCAT
GGGGCAAATACGACGGTTCGGCCTGCGCCCGCCCCATACGCAAGCCTCGGCAAATACTCCACTCCACTTC----------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------CACTGCACTAGGCAAGCAA-AGCAGAGCAGAGCAGCAACGTATTCAGGTTGGGACGGACGCTCGGGAA
CAGAGTGCTTGTCCGTTTCCTTCGCGCTCACTCCCCGTGCCCACAAATACCGCCACCCGCCATCCCTCTCCCACTACATG
TCCTCACTTCTCTTCCCGCTCTTCTTCT------CCTCCTCCCGCCGTGCCATTGCCGCCCGTGCCCTACCAATTCACCC
ACGCGGAAAG--TTCCCTTCATCCACCGCCGCACACGCCGCGCGTCAGGCCGGCCGTCCGTGTTCCTCGGTTCCGCCCCT
GCTCTCCAACGAGTCCGTGCGGATAGAGAGTCCTTTTCCGCTTTTGGAATCGGCACCAAAAGGGAAGCGGGAGATCCGGG
TGCTTTTCTTGGCCGGCCGATCCTGCCTGTATATACGATCGGGTCCATTCCCCCGCGCGAGGGCGCCCGAGGGAGCGGCG
ATTCGAGGGGGGCGGTGGTCTGGTCC------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GTGGATGGTCGTCATCGTCGTCGTTTGGCCGGACCGTGT
CGATGGAGTTCTGGCCCGAGTTCTTGGCGAGCAGCGGCGGGCATGAGTTCGTGGCGGGAGGCGTTGGCGGCATGGCCGGC
GTGCTGGCGGGCCACCCGCTGGACACGCTCCGCATCCGCCTGCAGCAGCCGCCGCGGCCCGTGAGCCCCGGGATCACCGC
CGCGCGGGTGACGCGCCCGCCCTCCGCCGTCGCGCTGCTGCGCGGCATCCTCCGCGCCGAGGGCCCCTCCGCGCTCTACC
GCGGCATGGGCGCGCCCCTCGCCTCCGTCGCCTTCCAGGTGAGCCAGCCAGTTTTAGGAACGTAAAACGTTTCACGCAAT
TAGGCCGGCCGGCCGGCGTGTGGAGTCCATGAGATCGTGAATTCTTTGGTCACGTCTTCCTTTTTCCAAAAGTTTGCAAA
--------TATCGTTTTCGAGAAGAAAGT--GTTCAAATAGATGGTACTACTACACGACGTGAACATCTATGACACGACT
AAGTAAATGAGCTAGTTCTTTTTAGGATAGTAGATGAGCTAGCTATCATATAGGACGGCGTCACTTTGCGTG-TACTACG
AAAAGATCATTTGTTTCTCCTCTTGCTTGGCGCATTTGAAGTCTTGTAGTTTTGCATCCTCCGCCTTTGCTTCCTTTACG
TGTATCGTTGCGTCGCGCTCATTCCGGTGGTTCACATGGTGTGGCGGCT-------------------------------
-------TAGCGTACGGCCATGCACATGTTTCATGTTTACTCGT--GATTAGGCCTGTGTCGGAACGTACTATGCTGCCT
A------------------------------ACACTGGCCATTTGGCCAACGGCATTTGTAAGTCTTCCGCAAAAAAAAA
AAACGACATTTGCAAGTCTGCACTTGAACACACCGTAAGGCTGCGCTTGGAACGTCGTTTCCCACCCGATTCCGCCTGTA
AAATATGCGCATGTAAACAAAATGGGTGGATGGGTGGACCACGTGATTGGAACGTCGTTTTAGGGGTGTAATTATTACGA
TGGTTTCTCCAAATCCACCGGTATTAGGCTGGTATGTGATACACGTCTCAGCCCATCCGATTTGTAAATACAACTGGCGG
GGGTATTCTGTTGGAGACCGGTAAATTACAGGCGTAGAGATTTGCAGGCGTAAGAAAAATCCGGCAATCCAATCGGGGCC
TACAGTGCCCGTGCCTGTATTTGCAGTAGA---------ATCATGACAGAAACTGAGCCGAAAATTTTATGTCGCAGAAT
GCAATGGTCTTCCAAGTGTACGCAATCCTCTCGCGGTCGCTGGATCGACGGATGTCCACCTCCGAGCCTCCCTCCTACAC
AAGCGTGGCACTCGCCGGCGTGGGCACCGGGGCACTGCAGACGCTGATCCTGTCCCCCGTGGAGCTCGTCAAGATCAGGC
TGCAGCTGGAGGCGGCGGGGCGGAAGCGCCAGGGGCCGGTGGACATGGCCCGGGACATCATGCGGAGGGAGGGCCTGCGC
GGCATATACCGCGGGCTCACGGTCACCGCGCTCCGGGACGCGCCGTCGCACGGCGTCTACTTCTGGACGTACGAGTACGC
GCGGGAGCGGCTGCACCCGGGCTGCCGCCGCACAGGGCAAGAGAGCCTCGCCACGATGCTCGTGTCCGGTGGCCTCGCGG
GGGTCGCCAGCTGGGTCTGCTGCTACCCGCTGGACGTGGTGAAGTCGCGGCTGCAGGCGCAGACGCAGACGCACCCGCCG
TCGCCGAGGTACCGCGGCGTCGTCGACTGCTTCCGGAAGAGCGTGAGGGAGGAGGGGCTCCCGGTGCTGTGGCGCGGCCT
CGGCACGGCCGTGGCGCGGGCGTTCGTCGTCAACGGCGCCATCTTCTCGGCCTACGAGCTGGCCCTGCGCTTCTTGGTGC
GCAACAACGGCCGCCAGACGCTGGTAATGGAGGAGATGAAGTGCCATGATCACTGATGCGAGTGCGAATCCATCCGTTTG
CAGCAATGGAGTTGCCCGCAGCGGCATGCGCACGTCCGCGGGGCTGTACATAGGCTAGTAATCCATGGGACTGGGAATCG
GTCGTGGAGATCATACCATTTACAAC-AAGGTGTGGTTTTCAGAGCTTAGTAAAGTTATTAGTAGCTTCAGAATTCACAG
AAATTGGCGCTATAGGTGTGCTTGTTGACGACGACGATCAATTCTCCAATGTCTGGGGAGATGCTATTACATGTATATAT
AGTACAGGAA-------AATCAATGAAGACCATCAGTCAATGACCAGGTGTGGGACCAGTGAACTGCGATCGCAATTCTT
GTCTGACGGGAGATAATGTTCTGATACCAGCGTACCTGTTCTACTTGCTCAGCTAAGGGAATCCCATGTATGCTTTGCTC
ACGTTGCGTGGATGGCTCCAGACTCATGAATTCCGTCGTAAACACGAGCGCGACAGTGCAAGTGATGCATGGAAATGCAG
ATTTTTCCTGGTAGCTCTCAGTGGCAAGTTTTCACAGGAAGAGGGCAAAAACGGATTAGCTTTCTATACGGAGCACTTGT
GGACGATACAGAATTGCCATTTCTGTGGAATCCTGCGCCACTACTTGCGGTAGATTCCGTGCGTTTACCAGAGCCAAACA
GGTGTAGATTCCGATTCCAGATGGGATCACGCTGATT------TGAGGTCCCGGTCTCCCTGGTCCCTG----GGAGAGG
AGAACCCCAGGTATAGAACGACGCAGTTAAGTAAAACACTC---------------------------------------
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>chr6D_3331
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-----------------------------------------AGGGCGTGTTTGGTTAGTTTCTCCACCGGGCCGGGCTAG
GAAAGCAAAAACAAGCCAGGCTGAGCAGGGCCTGGATAAGGAAAAACAGGGCCAAAAACGTAGATGACCAGTTGATTGGT
TGCCTGCAATAGGGGTCTTGTCATCGAGATGAAATTTTCACACGGCGTTTGGTTGCATACATGCATATGATTAGGAGTTA
ATAACAAAGCTTAACACCCACCAGGTTTGGCATCTCATTTCGTCGAACACGTTGAGCGCGCCGGAGGTTCCTCTGCCCAT
CATGTCCACCGCCAGCTCCCGGCGACCATGGGCGCGCTCGGCACCTGAACTCCTCCACGCACGGCACCGTGGCCGCGCCC
GGCTCGCGGCCGTGGACGCGCCCAGCTCCAGCGGCAGCCGCCCCGTGATGTTGTTGTTCAG-------------------
-------------AGAGCACACAAGCAAGCAAGAAGACTAAGAAGTAGCAGCCTGAAGCCCCGTGCACTTCAGAGTTCAC
AGAACACACAAGTAAGCAAGAAGACCAAGAAGCAGCAGCCGCGCCGGACGCTCGTCCACGAGCTCCAGCCACTCCAGGTC
GCGGTGTCGTGCTTTCCCTAATCATTTGATGGATGTGGAGGAGTGTGCGAGAGAAT
>SNPs
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS------------------------------------------S---------------------S------
------S-----S--------S---SS-----------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
----------------------------------------------------------------S---------------
---------------------------------------------S---------------------------S------
-----------S---------S------------------------------------------------S---------
------------------------------S-------------------------------------------------
--------------------------S-------------------------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
---------------------S---------------------------------------------SS-----------
----------------S----------------------------------S----------------------------
S----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S---------------------------------------S-------
-----------------------------------------------------------------------------S-S
----------------------------------------------------------------------S---------
----------S------S--------------------------SS----------------------------------
--------------------------------------------------------------------------------
------------------------SSS-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S----------------------------------------------------S------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-----------------------S--S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
----------S--------------------------------------------------------S----------S-
------------------------------------------------------S-SS----------------------
---------------------S----------------------------------------------------------
-------------------------------------------------------------S------------------
-------------------------S------------------------------------------------------
--------------SS------S-SS-SS-S-------------------------------------------------
-----------------------------------------S------------S-------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S-----S------------------
------------S---------------------------SS----------S---------------SSSSS-------
S--S-----S---------------------------------------------------------------S-S----
--S--------SS------------------S--------S----------S----------------S-----------
--------S-------S---------S----S---------S----S---------------------------------
-S------------------------------------------------------------------------------
---------------------------------S------S------S----S---------------------------
------S----------------------S-------------------------S-S---SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------------------------------------------------------------------S
------------------------------------------------------S---S-----------S---------
--------------------------------------------------------
>forward_22
--AAACACAGGCAACCAAACGG----------------------------------------------------------
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>reverse_2125
--------------------------------------------------------------------------------
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--------------------------------------------GAGATTAGGCTTGCGTCGGA----------------
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>forward_306
--------------------------------------------------------------------------------
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----------------------------------------------TCGGCAAATACTCCACTCCG--------------
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>reverse_2126
--------------------------------------------------------------------------------
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---------------------------------------------AGATTAGGCTTGCGTCGGAA---------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_1998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CTCCGCCTTTGCTTCCTTTC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_4081
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GGAGCCCCACGTATAGAACG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
