>input_sequence_40000
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----------------------------------------------------------------------------ATGA
CGCAGACTCCCGGCGCCCACGCCGCCCCGGCCGCGCCGGCGCCTCCACCCCCCGCCGAGGGCGCCGGGCTGTCCGAGGCC
ATCGTGGCCGCGCTGCCGCCGGACCCGTACGACCAGCTGGAGGTGGCCCGCAAGATCACCGCCGTGGCCGTGGCCGCGCG
CGCCTCCCGCCTGGAGCACGAGGCCGCGCGCCTCCGCCAGAAGCTGGCCGACAAGGACCGCCTCGCCGCGGAGCTCGCCG
ACAGGGCCGGCGCGCTCGACCAGGCCCTCCACGACGCCGACGCCCGCCTCCGCGTCGTCCTCGAAGACAACGTACGTGAC
CCCGATCGCCTCGCCGCTTCGGTTTTGCCGGTTGCCAGCTGGTGCTGAGATTTTGTCGTTGGTCTTCTTCTTCTTGTCGC
GTAGGCTAAGCTGGTGAAGGAGAGGGACTCGCTCGTCCAGACGTCCAGGAAGCTGGCCAGGGACCTCGCCAAGGTGACGC
CATTTGTGATCGTCTGC-------------GATCACACGGCTGTTGTGCTCGCGTTTACTA---CTAACTTTTCTGCGAT
CA------------------CACTTGCAGCTGGAGACATTCAAGAGGCACCTGATGCAGTCACTGGGGGACGATAATTCT
TCAGTAAGTTCCTCC---------------TCTGTCCCCCGTTTCTGCCAGGCAATGGCCTCTGTTGCCGTGCTCTGTAA
CCGAAGATCAGTGACAGTGTATGTATGTATTGCTAGTATTAGTCATGA----------TGTGTCCTTCTCTGCAGAGTCA
GGAGACAGTCGACATCAGAACATGTGAGCAGTCGGTCGCCAAAGCAAGTTCCTGGAGAGGTATATATACATCATGATCAC
TGCTCTCCCTCGTGGACAATTTTCATCTCTAGCAGCTCATTGTGTTCCATCTGTGCCCAT------------CGACCTCC
CCGAAGACGACGCGTCCGCGAGCAATAATCCTGCTCCTGCATCCACCACACGAGCCGACGGATCTTCCGAAGCCGAAAGC
GTAAACCAGGAAGGTACGCTACCTCCGTTCCAAAATACATCTATTTTGAAACGGAGGGAGTAGTTACGATCAACAACATT
CTACTATAATATTATCTGCAGTGAAGCACAACGACAGAGTTCTGAACAGCTATACGGTACTTCTCTTGTGTGCACGTTGA
CAGTGGCAAGGCCGTTCGAGCAGAAGCTCACCATCACGCACATGACCCCGCGCCTCATGGCCGACCCGTCGCCGAAGCAG
AGGTCCTCCTCCGCGGCCTCCACCAGGAGATACTCCACCGCCGTGTCCCCGAAGCTGGCGTCCCGCGCCTCGTCCCCTAG
ACGGTACTCCACGGCCGTGTCGCCGAAGCTGTCGTCCGGCAGCAGCGGCGCCGGCACCGCCAGTTCCCCGCGGCTCGAAG
GCCACATGGCGATGTCGGCGTGGCTCCCCTCCAGCAAGATGTCCTCTGCGGCCAATTCACCCCCTCGTGGGCACTCAGTC
TCAGGTACTC-----GAACGAACGTTCTTCTTTTTTTTGTTCCAGGAGTTCAGCATTC-----------------AGCTC
GTTCATCTGGAGATTGTTCTTCATTTTCTCCACACA--TAAGGACGTTGTTCTTCTGGGGTTT----TTTCAGGACGCAC
GACAAGGATAGATGGCAAGGAGTTCTTCCGTCAAGCAAGGTACCAC---------TCGGTACCTCTCGATTTGTTTTGAC
AGAAAAACATGG----------------------------CATGGCAACAACTTATTTCCCTCCTCTCTTTTTTTTTTTT
GCTTCATCCGCAGGAGCCGTCTGTCATACGAACAGTTTGCTGCTTTCCTCGCCAACATCAAGGAGCTGAACGCTCACAGG
CAATCCCAAGAGGTAAC------------CCTCACTTTCAGTTTCCAGCTGGATCCGTGGTTTCTTTCGGATACAGATCT
TGAGGTG------TACTATATTGGT---GTGGTGGTGCAGGAGACCCTCGAGAAGGCGGACCAGATCTTCGGCGCAGAAA
ACAAGGACCTCCTCCTCTCATTTCAGGGCCTACTTAGCCGCAGCCTCACGTAA---------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr3B_1_TraesCS3B01G338000
TTTCTCGTAGCTTTTGTGTTGCTAATGATTTGCCTTAATA-AATCCTACTAACAAAGAAGAAAAGCGACACTCGACGTTC
GCAAGACGTCGTTGTGGTGATTTCTCCTTTGCTAGGCCCCACATTTTAAAACATACTCCCTTCGATCCATAATAGGGG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTTATATAGTTTTTTTAGGGGAAATTTTTATATAGCAAAAAGACAAATTCAGGTTTTGGGAAATTTTTATGAGGA
AGTCTCACATAAGGAGTACCCGGGCTCCAGCGTATGGCCCAATGAGCGATGAGCCCACATCGACCGAGCGGACA------
-----------------AAAAACTGGATACAAGGAACT----CGCCATCAAGCGAAAAAACTA----ACGCCGTTGCCGG
GGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGACTGAATTGTTCAAATCGTCAA
TTCCAGACACTCTA------------TAGAAATCAATCTCTAACTCGGCTTTGGTTCGGTGTACTGTACATACATACTCC
TACCCGTGCCATGCCTGTTGCCAGTTGGGACCAGCTGCAGCAGTGTCTCCATGAATGGCATGCCCGGACGCTCAAGAGCC
AAGAGCGAGCCTCACCGGCGGCAGGAACCTCGTGGTGGCCACGGTCGTCGGTGCCTTTCGGGAGCGACCAGCAGTACATC
CAGCGCCGGCACGTACCGAGCCTTCATCGA---------------GAGCGGAAATACTAAACGTACGGGAAGATATG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATATC---
----------------------------------------------TAGCTGTTTCGAAGGGATTTTTCGTATCTTCCCC
GGATGGGACGTGGCTGGCGCTTTCCAAGAGCCAAGACGGAACTCGACGTGCAAGATGC--ATATTCAAACGCAAAGCGAC
GGCCGCGCTCCTCTCCTCGATCGCCACCTCCACTAGCAGCAGCACCACATTCCTTCCTTCCCGCCCCCCGATAACCTCCT
CCTCCCCGCTTCGGATCTCACCACCACTACCACCACCACG-----TCCGGCACTCCATTCCACCCCCAGTCGCTCGATGA
CGCAGACTCCCGGCGCCCACGCCGCCCCGGCCGCGCCGGCGCCTCCACCCCCCGCCGAGGGCGCCGGGCTGTCCGAGGCC
ATCGTGGCCGCGCTGCCGCCGGACCCGTACGACCAGCTGGAGGTGGCCCGCAAGATCACCGCCGTGGCCGTGGCCGCGCG
CGCCTCCCGCCTGGAGCACGAGGCCGCGCGCCTCCGCCAGAAGCTGGCCGACAAGGACCGCCTCGCCGCGGAGCTCGCCG
ACAGGGCCGGCGCGCTCGACCAGGCCCTCCACGACGCCGACGCCCGCCTCCGCGTCGTCCTCGAAGACAACGTACGTGAC
CCCGATCGCCTCGCCGCTTCGGTTTTGCCGGTTGCCAGCTGGTGCTGAGATTTTGTCGTTGGTCTTCTTCTTCTTGTCGC
GTAGGCTAAGCTGGTGAAGGAGAGGGACTCGCTCGTCCAGACGTCCAGGAAGCTGGCCAGGGACCTCGCCAAGGTGACGC
CATTTGTGATCGTCTGC-------------GATCACACGGCTGTTGTGCTCGCGTTTACTA---CTAACTTTTCTGCGAT
CA------------------CACTTGCAGCTGGAGACATTCAAGAGGCACCTGATGCAGTCACTGGGGGACGATAATTCT
TCAGTAAGTTCCTCC---------------TCTGTCCCCCGTTTCTGCCAGGCAATGGCCTCTGTTGCCGTGCTCTGTAA
CCGAAGATCAGTGACAGTGTATGTATGTATTGCTAGTATTAGTCATGA----------TGTGTCCTTCTCTGCAGAGTCA
GGAGACAGTCGACATCAGAACATGTGAGCAGTCGGTCGCCAAAGCAAGTTCCTGGAGAGGTATATATACATCATGATCAC
TGCTCTCCCTCGTGGACAATTTTCATCTCTAGCAGCTCATTGTGTTCCATCTGTGCCCAT------------CGACCTCC
CCGAAGACGACGCGTCCGCGAGCAATAATCCTGCTCCTGCATCCACCACACGAGCCGACGGATCTTCCGAAGCCGAAAGC
GTAAACCAGGAAGGTACGCTACCTCCGTTCCAAAATACATCTATTTTGAAACGGAGGGAGTAGTTACGATCAACAACATT
CTACTATAATATTATCTGCAGTGAAGCACAACGACAGAGTTCTGAACAGCTATACGGTACTTCTCTTGTGTGCACGTTGA
CAGTGGCAAGGCCGTTCGAGCAGAAGCTCACCATCACGCACATGACCCCGCGCCTCATGGCCGACCCGTCGCCGAAGCAG
AGGTCCTCCTCCGCGGCCTCCACCAGGAGATACTCCACCGCCGTGTCCCCGAAGCTGGCGTCCCGCGCCTCGTCCCCTAG
ACGGTACTCCACGGCCGTGTCGCCGAAGCTGTCGTCCGGCAGCAGCGGCGCCGGCACCGCCAGTTCCCCGCGGCTCGAAG
GCCACATGGCGATGTCGGCGTGGCTCCCCTCCAGCAAGATGTCCTCTGCGGCCAATTCACCCCCTCGTGGGCACTCAGTC
TCAGGTACTC-----GAACGAACGTTCTTCTTTTTTTTGTTCCAGGAGTTCAGCATTC-----------------AGCTC
GTTCATCTGGAGATTGTTCTTCATTTTCTCCACACA--TAAGGACGTTGTTCTTCTGGGGTTT----TTTCAGGACGCAC
GACAAGGATAGATGGCAAGGAGTTCTTCCGTCAAGCAAGGTACCAC---------TCGGTACCTCTCGATTTGTTTTGAC
AGAAAAACATGG----------------------------CATGGCAACAACTTATTTCCCTCCTCTCTTTTTTTTTTTT
GCTTCATCCGCAGGAGCCGTCTGTCATACGAACAGTTTGCTGCTTTCCTCGCCAACATCAAGGAGCTGAACGCTCACAGG
CAATCCCAAGAGGTAAC------------CCTCACTTTCAGTTTCCAGCTGGATCCGTGGTTTCTTTCGGATACAGATCT
TGAGGTG------TACTATATTGGT---GTGGTGGTGCAGGAGACCCTCGAGAAGGCGGACCAGATCTTCGGCGCAGAAA
ACAAGGACCTCCTCCTCTCATTTCAGGGCCTACTTAGCCGCAGCCTCACGTAACACACACACAC----------------
----------CAATATATACCACAGCTGATCATGAGCTGAATGCAATGCAGCAAGTGAAAGTTATGTGCACTTTGTATGC
AGAATAATCATCTGCTCATCGCAAAAGAAAAGAA-TAATCATCATTTCTTTATCAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ACGAAGAACTGCACGCGTCAAACATAAACC
CCTGGAGCAGCTCTCCTGCGTTCCAGACAGGTTGTGCTTTACGCTCCTTGTTGTAATCAGACAC--TTTTTTGCACTATA
AATGGAAAACAGATCAAAGGGGGTCATGTGCGTCACACATGGTAGTGATCACAAGCAGTTGGCTACAGAGC------CAC
GCACCAAGATTGAACAGGGTTTACTTGCAATGATAAGAGAACGAACCACTACAATTCAGATTCTGAAAGTCAAGAAGAAT
ACCGTCTTCACATTC----AGAGTCGTAA---GTCGTAACTAGAAGCAGATGCCAGATTTCAACCTTTCAAAGGTCACTT
TTGATGACCAACGACTATCTCAGTGTCAGTGGTCGACGGAGGCTTAGAAGCACCCAATGCACACGCAGTTTGAAGCTTCC
TAAGCAATATCCAGACCGGTATATGTACAAGACGGAGAATATCCGTGGAAAATTTGAGGCCGTGCTCAAGCATACTTCTG
GATTATGTACATGGGGTTTTAGCTTGTGCTGCGAGTCGCACTATCTAGTTTTACTCGGGGAGTATATGTAATTTTATGTG
ACTGTAAGGCAGGATGAT-GTTTTTGTAGATGGGCTGCCATGAGCTTGCATCTGCTATTCTTCTCCTCCTCACTCCCTCT
TAGTTAGCGTCTTTTTAAGGCCTCTCAAGATCTTTGCAAACCATATCGTGTTCATGATGAGTAGTATTGTGGGCACGCCA
AATATCAGAACGCGGCTGAAGGTCCGCATCTGCATCACCTGTCAATAATTCAGATCAAATTTAGTTTCAGAGTCATCGAT
GTGATATTTGTCACATAGTTACATGCTGTCACACAAGTAGGAATTACGTC
>chr3A_1
TTTCTCGTAGCTTTTGTGTTGCTAATGATTTGCCTTAATAAAATCCGACTAACAAAGAACAAAAGTCACACTAGACGTTT
GCAAGACGTCGCTGTGGTGATTTCTCCTTTGCTAGGCCCCACATTTTAAAACATACTCCCTT---AACCTTAGTTCAAAG
TTGCGATACTTATTTTGGATCGGAGGGGGGTACTATTTTACATGACCACTTGTTTGG-AACATGTTAACCTTTATTATTT
TTTAAACACGAACATCTCTTTGAATTATATGGACATTTCACGGGAATAATTTTAAATATATGAACATCATATTCGAATGC
ACGGATATTATTTTGATGTATGTGAGTATAATTTCTTTTCACATACAATAACTTTTCTCTAAAGTATATATTTTACAGCA
CACTAAGACTTTACAAATAATTAAACTGATTATATAAAATTAGTGAAATAAATTT-------------GTACTTCTTAAG
GGTTTTTTATGTAGTATTTTCAGGGGAAATTTTTATATAGCAAAAGGACAAATTCAGGTTTTGAGGAAG-----------
----TCATATAAGGAGTACCCGGG-TCCGGTGTATGGCCCAGTGAGCAATGAGCCCACATCGACCGAGCAGGC--AAAAA
AAAAAGACCGAGCGGACAAAAATGAACTAA-------------GCCATCAAGCGCAAAAATAGTTTCACGCCGTTGCCGG
GGATCGAACCCGGGTCACCCGCGTGACAGGCAGGAATACTTACCACTATACTACAACGACTGAATTGTGTAAGCTTTCAA
TTACTCCTTAATTATAAATATTCCCGCAGAAATCAATTACT---------------------------------------
--------------------------------------------------------------------------------
--------------------------ACATCGTAGCAGCCACGGTCGCCGGTGGA----------------------GTT
CAGCACCAGCGCATACCGAGCCCTCATCGATCGTACTACGACTACGAGCGGAAATGCCAAACGTACGGCCGGGAAGATGT
CTACAGGGTCTCTGATCCGTTCATTGGTGAAACGATGGCGTTGCGAGATGGGGTGATATTTACAAAGCTATGTGGATTCT
CCCGTGTGATAATGGAAACAGATTGTCTAGAGATTGTTAATTTTTAAAAGACTCGGCATTATAGCTTGTCTGTGGTGGCA
TCGGTATTACTAGAAATTGAAGAGCTAGCTTCCTTGTTTTTTTCTTTTGATATTCAGCATGTAAACCGACCAGCTAATGT
ATCGGTCCATCTTTGTGCAAAACATGCATGTACTCTGACGATTACCGAAAGTTGAACTGGTTCGAGACCCTCTTTCCTGC
TCACCAGCTTGTTAGTAATGATGCCAGGAATTCATTGGTTGAATAAATCTCTCTGATTGAAACACAAAAAGAATGTCTAC
AGACTAGAGTACAGGCTGGGACCACGGAGGGCCGACCCTGTTCCCGTAGCTGTTTCGTAGGGATTTTTCGTATCTTCCCC
GGATGGGACGTGGCAGGCGCTTTCCAAGAGCCAAGACGGAACTCGACGTGCGCGACGCATATATTCAAACGCAAGCTGAC
GGCCGCGCCCCTCTCCTCGATCGCCACCTCCACTAGCAGCAGCACCACATTCCTTCCTTC-CGCCCCCCGATAACCTCCT
CCTCCCCGCTTCGGATCTCACC------ACCACCACCACGTCCGATCCGGCACTCCGTTCCAACCCCAGTCGCCCGATGA
CGCATACCCCCAGCGCCCACGCCGCCA------CGCCGGCGCCTCAACCTCCCGCCGAGGGCGCCGGGCTGTCCGAGGCC
ATCGTGGCCGCGCTGCCGCCGGACCCGTACGACCAGCTGGAGGTGGCCCGCAAGATCACCGCCGTGGCCGTGGCCGCGCG
CGCCTCCCGCCTGGAGCACGAGGCCGCGCGCCTCCGCCAGAAGCTGGCCGACAAGGACCGCCTCGCCGCCGAGCTCGCCG
ACAGGGCCGAGGAGCTCGACCAGGCCCTCCGCGACGCCGACGCCCGCCTCCGCGCCGTCCTCGATGACAACGTACGTGAC
CTCGACCGCCTCGCCGCCTCGGTTTTGCCGGTTGCTAGCTGGTGCTGAGATTTTGTCGTTGGTCTTCTTCTTCTTGTCGT
GTAGGCTAAGCTGGTGAAGGAGAGGGACTCGCTCGTCCAGACGTCCAGGAAGCTGGCCAGGGACCTCGCCAAGGTGACGC
CATTTGTGA---TCTGC-------------GATCACACGGCTGTTCTCCTCGCGTTTACTATCACTAACTTTTCTGGTGG
GTTTCCG---------------CTTGCAGCTGGAGACGTTCAAGAGACACCTGATGCAGACACTGGGGGACGACAATTCT
TCAGTAAGCTCCTCCAGTTTAAACCGATCCTCTGTCCCCTGTTTCTGTCGGGCAATGGCCACTGTTGCCGTCCTCTGTAA
CCGAAGACCAGTG----------TATGCATTGCTAGTATTTAGTCATGAATCATTACGTGTCTCGTGCTCTGCAGAGTCA
GGAGACAGTGGACATCAGGACCTGCGAGCAATCGGTCGCCAAAGCAAGTTCCTGGAGAGGTATATATTCTTT-TGATCAC
TGCTCTCCCTCTTGGACAATGTTCATCTCTAGCAGCTCATTGTGCTCCATCTGTGTTAACTAATTCTTCTCGCGACCACC
CCGAAGACGACGCGTCCGCGAGCAACAATCCTGCTCCTGCATCCACCACCCGAGCCGACGGATCTTCGGAAGCCGAAAGC
GTGAACCAGGAAGGTATGCGCTC--------------------------------------AGTCACGATCAACAACATT
CCAATAATACG-TATCTGCAGTGCAGCACAACTACAGGATTCTGAACAATG--------CTTCTGTTGTGTGCACGTTGA
CAGTGGCAAGGCCGTTCGAGCAGAAGCTCACCATCACGCACATGACCCCGCGCCTCATCGCCGACCCGGCGCCGAAGCAG
AGGTCCTCCTCCGCGGCCTCCGCCCGGAGATACTCCACCGCCGTGTCCCCGAAGCTGGCGTCCCGCGCCTCTTCCCCTCG
ACGGTACTCCACGGCCGTGTCGCCGAAGCTGTCGTCCGGCAGCAGCGGCGCCGGCGCCGCCACTTCCCCGCGGCTCGAAG
GCCACATGGCGATGTCGGCGTGGCTCCCCTCCAGCAAGATGTCCTCTGCGGCCAACTCGCCCCCTCGTGGGCACTCAGTC
TCAGGTAGTCC-----------------------TTTTTGTTCGACACAAGAGTTCATCAGCATTCACAGGAGCTAGCTC
ATTCATCTGGAGATTGCTCTTCATTCTCTCC-----GCTAAGTACGTAGTTGTTCTTCTGTTTTTGGTTTCAGGGCGCAC
GACGAGGATAGATGGCAAGGAGTTCTTCCGTCAAGCGA-------------------GGTAGCTCTCGTTTCCTTTTGGT
ATACCATAGCCTGCAAAACATTGGATTCTTGGTACGAAAACATGTCATCAATTTATTTGTCTCC--------TTTTTT--
-CTTCATCCGCAGGAGCCGTCTGTCGTACGAACAGTTTGCTGCTTTCCTCGCCAACATCAAGGAGCTCAACGCTCACAGG
CAATCCCAAGAGGTAAC------------CCTCACTTTCAGTTTCCAGCTGTATTTGTGGTTTCTTTCGGATACAGATCT
TGAGGTATACTTATACTATATTGGT---GTGGTGGTGCAGGAGACCCTCGAAAAGGCAGACCAGATCTTCGGCGCAGAAA
ACAAGGACCTCCTCCTCTCATTTCAGGGCCTGCTTAGCCGTAGCCTCACGTAACACACACACACACACACACCCACAGGC
AATTTTATACCAC-----------------------CTGAATGCAATGCAGAAAGTGAAAATTATGTGCACTTTGTATGC
AGAATAATCATCTGTTCATCGCAAAAGTAAAGAAATAATCGTCATTTCTTCATCAC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------ACAAAGAACTG-------------------
----GAGCAGCTCTTCTGCCATCCAGATAGGTTGTGTTTTGCGCTCCTTGTTGTAATT-GACAC--GATTTTGCCCTATG
AATAGAAAAAAGATCAAAGGGG---------GTCACACATGGTAGTGATCACAAACAGTCAGCTACAGAGCTGCTGCTGC
ACACCAAGATTGAGCAGGGTTTCCTTGCAATGATAAGAGAATGAAACATTAGAATTCAGATTCAGAA-GTCAAGAACAAT
ACCAGCTTTCACATTCCTGAGAGTCGTAA---GTCGTAACTAAAAACAGATGCCAGATTTCAACCTTTCAAATGTCACTT
TTGATGACCGACGACTATCTCAGTGTCAGTGGTCGAGGGGGGCTTAGAAGCATCCAATGCACATGCAGTTTGAAGCTTCC
TAAGCAATATCCAGACCGGTATATGTACAAGACGGAGAATATCCGTGGAAAATTTGAGGCCGTGCTCAAGCATACTTCTG
GATTATGTACATGGGATTTTAGCTTGTGCTGCGAGTCGCACTATCTAGTTTTGCTCGGGGAGTATATGTAGTTTTATGTG
ACTGTAAGGCAGGATGATGGTTTTTGTAGATGGGCCGCCATGAGCTTGCATCTGCTATTCTTCTCCTCTTCACTCCCTCT
TGGTTAGCGTCTTTTTAAGGCCTCTCAAGATCTTTGCAAACCATATCGTGTTCATGATGAGTAGTATTGTGGGCACGCCA
AATATCAGAACGCGGCTGAAGGTCCGCATCTGCATCACCTGTCAATAATTCAGATCAAACTTAGTGTCAGAATCATCGAT
GTGATATTTGCCACATAGTTATGTGCTGGAACAGAAGTAGGAATTACGTC
>chr3D_1
TTTCTTGTAGTTTTTGTGTTGCTAATGATTTGCCTTAATAAAATCTGACTAACAAAGAACAATAGCGACACTAGACGTTC
GCAAGACTTCGCTGTGGTGATTTCTCCTTTGCTAGGCTCCACATTTTAAAACATACTCCCTTCGTAACCTTAGTTCCAAG
TTGCGACACTTATTATGGATTGGAGAAAGC-ACTACTTTGCATGACCACTTTTTTTTTAACATGTTAACCTTTATTAATT
TTTAAACACAAACATCTCTTTGAATTACATGGACATTTTACAAGAATAATTTTAAATATATGAACATCATATTTGAATGC
ACGGATATTATTTTGATGTATGTGAGTATAATTTCTTTTCACATACAATAACTTTTCTCTAAAGTATAT-TTTTACAACA
CACTAAGATTTTACAAATCATTAAACTGATTATATAAAATTAGTGAAATAAATTTACTATTTTATGTTGTACTTTTTAAG
GGTTTTTTATATAGTATTTTCAGGGGAAATTTTTATATAGCAAAAAGACAAATTCAGGTTTTGAGGAAG-----------
----TCACATAAGGAGTACCCGGGCTCCGGTGTATGGCCCAATGAGCAATGATCCCACATCGACCGAGCGGGCAAAAAAA
AAAAGGACCGAGCGGACAAAAATTGGATACAAGGAACTAAACCGCCATCAAGCAAAAAAATCA----ACGCCGTTGCCGG
GGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTTACCACTATACTACAACGACTGAATTGCTCAGTTCGTCAA
TTCCA-CTTATATATTAATTTTCGTGTAGAAATCAATTTCTACCTCCGCTTTCGTTCCGTGTACTGTACATACATGCTAC
TCGTGCCA----------TGCCAGTTGGGACCAGCTGCAGCAGCGTCTCCGTGAATGGCATGCCCGGACGCTCAAGAGCC
AAGAGTGAGCCTCACCGGCGGCAGGAACCTCGTGGCGGCCACGGTCGCCGGTGCCTTTCGCGAGCGACCAGCAGTACGTC
CAGCGCCGGCACGTACCGAGCCTTCATCGA---------------GAGCGGAAATACTAAACGTACGGGAAGGTATG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATATCTAC
AGACTACAGAGGG----------------------CCCTGTTCCCGTATCTGTTTCATAGGGATTTTTCGTATCTTCCCC
GGATGGGACGTGGCAGGCGCTTTCCAAGAGCCAAGACGGAACTCGGCGTGCACGACGCATATATTCAAACGCAAGCCGAC
GGCCGCGCTCCTCTCCTCGATCGCCACCTCCACTAGCAGCAGCACCACATTCCTTCCTTCCCGCCCCCCGATAACCCTCT
CCTCCCCGCTTCGGATCTCACC------ACCACCACCACGTCCG-----GCACTCCATTCCAACCCCAGTCGCCCGATGA
CGCAGACCCCGAGCGCCCACGCCGCC---GCCGCGCCGGCGACTGCACCCCCCGCCGAGGGCGCCGGGCTGTCCGAAGCC
ATCGTGGCCGCGCTGCCGCCGGACCCGTACGACCAGCTGGAGGTGGCCCGCAAGATCACCGCCGTGGCCGTGGCCGCGCG
CGCCTCCCGCCTGGAGCACGAGGCCGCGCGCCTCCGCCAGAAGCTGGCCGACAAGGACCGCCTCGCCGCGGAGCTCGCCG
ACAGGGCCGAGGAGCTCGACCAGGCCCTCCGCGACGCCGACGCCCGCCTCCGCGCCGTCCTCGATGACAACGTACGCGAC
CTCGATCGCCTCGCCGCTTCGGCTTTGCC-----------GGTGCTGAGATTTTGTCGTTGGTCTTCTT--TCTTGTCGT
GTAGGCTAAGCTGGTGAAGGAGAGGGACTCGCTCGTCCAGACGTCCAGGAAGCTGGCCAGGGACCTCGCCAAGGTGACGG
CCGGTCCTCCTCGTCTGTTATCTGCGATCAGATCACACGGCTCTTCTCCTCGCGTTTACTA---CTAGTCTACTACTAAT
GTTTTTGGTTTTATTTTCTTCACTTGCAGCTGGAGACATTCAAGAGGCACCTGATGCAGTCACTGGGGGACGATAATTCT
TCAGTAAGTTCCTCC---------------TCTGTCCCCCGTTTCTGCCAGGCAATGGCCTCTGTTGCCGTCCTCTGCAA
CTGAAGATCAGTG----------TATGTATTGCTAGTAGTAGTCATGAACTCATGA--TGTGTCGTTCTCTGCAGAGTCA
GGAGACAGTGGACATCAGAACCTGCGAGCAATCGGTCGCCAAAGCAAGTTCCTGGAGAGGTACATATTCTTT-TGATCAC
TGCTCTCCCTTGTGGACAATGTTCACCTCCAGCAGCTCATTGTGTTCCATTCATCTGTGCTAATTCTTCTCGCGACCACC
CCGAAGACGACGCGTCCGTGAGCAATAATCCTGCTCCTGCATCCACCACCCGAGCCGACGGATCTTCCGAAGCCGAAAGC
GTGAACCAGGAAGGTATGCACTC--------------------------------------AGTCACGATCAACAGCATT
CCACTAATACG-TATCTGCAGTGCAGCACAACGATAGGATTCTGAACAATG--------CTTCTGTTGTGTGCACGTTAA
CAGTGGGAAGGCCGTTCGAGCAGAAGCTCACCATCACGCACATGACCCCGCGCCTCATCGCTGACCCGGCGCCGAAGCAG
AGGTCCTCCTCCGCCGCCTCCGCCAGGAGGTACTCCACCGCCGTGTCCCCGAAGCTGACGTCGCGCGCCTCCTCCCCTAG
ACGGTACTCCACGGCCGTGTCGCCGAAGCTGTCGTCCGGCAGCAGCGGCGCCTGCGCCGCCACTTCCCCGCGGCTGGAAG
GCCACATGGCAATGTCGGCGTGGCTCCCCTCCAGCAAGATGTCCTCTGCGGCCAATTCGCCCCCTCGTGGGCACTCAGTC
TCAGGTACCAGAATAGAATGAACGTTCTTCCTTTTTGTTGGTCCACACAAGAGTTCATCAGCATTCACAGGAGATCA---
----------------TTCATCATTTTCTCCGCTAAGCTAAGTACGTTGTTGTTCTTCTGTTTTTCGTTTCAGGGCGCAC
GACGAGGATAGATGGCAAGGAATTCTTCCGTCAAGCAAGGTACCATACCACTCGATCGCTACCTCTCGTTTTGTTTTGAC
AGAAAAACATGG----------------------------CATGGCAACAACTTATTTCCCTCC--------TTTTTTTT
CCTTCATCCGCAGGAGCCGTCTCTCGTACGAACAGTTTGCTGCTTTCCTCGCCAACATCAAGGAGCTCAACGCTCACCGG
CAATCCCAAGAGGTAACTGGGAACGGGCACCCCACTTTCAGTTTCCAGCTCGATCCGTGGTTTCTTTCGGATACAGATCT
TGAGGTAACACCATACTATATTGCTGTGGTGGTGGTGCAGGAGACCCTCGAGAAGGCGGACCAGATCTTCGGCGCAGAAA
ACAAGGACCTCCTCCTCTCCTTTCAGGGCCTGCTTAGCCGTAGCCTCACGTAACACACACACACACACACACACCTGTTG
GCTATTGCGCCAATATATACCACAGCTGATCATGAGCTGAATGCAATGCAGCAAGTGAAAATTATGTGCACTTTGTATGC
AGAATAATCATCTGTTCATCGCAAAAGAAAAAAA-TAATCATCATTTCTTTATCATACGGTGTCGTCAGGTTTTCGTCCC
ATGGCGGTTGATCCGTTTCAGGATCCTCCTGCGGTGGGTTTCCTGTCGATGCTCCAGCTCGCTCCTCCCCTTTCAGTCTT
ATTTTGGGTCTCGTGGTCGTTTTATTTTGGGTATGATACCTAGAGAACTACTGGACCATGTATTTCCGTTGATTGCAAAA
TTAATGGAAAGGGGTGCGAGCCTGGTTGGAAAAAAAAAAATCTTTACCATACGAAGAACTGCACGCGTAAAAACGTAAAT
CCTGGAGCAGCTCTTCTGCGTTCCAGATAGGTTGTGCTTTACGCTCCTTATTGTAATCAGACACTGTTTTTTGCACTATA
AATGGAAAACAGATCAAAGGGCTA----------------------------------------ACAGAGC------TGC
GCACCAAGATTGAACAGGGTTTACTTGCAATGATAAGAGAATGAACCACTACAATTCAGATTCTGAAAGCCAAGAACAAT
ACCGGCTTCACATTC----AGAGTCGCAAGTCGTCGTAACTAAAAGCAGATGCCATATTTCAACCTTTCAAAGGTCACTT
TTGATGACAAACGACTATCTCAGTGTCAGTGGTCGAGGGAGGCTTAGAAGCATCCAATGCACACGCAGTTTGAAGCTTCC
TAAGCAATATCCAGACCGGTATATGTACAAGACGGAGAATATCCGTGGAAAATTTGAGGCCGTGCTCAAGCATACTTCTG
GATTATGTACATGGGATTTTAGCTTGTGCTGCGAGTCGCACTATCTAGTTTTACTCGGGGAGTATATGTAGTTTTATGTG
ACTGTAAGGCAGGATGATGGTTTTTGTAGAAGGGCGGCCATGAGCTTGCATCTGCTATTCTTCTCCTCTTCACTCCCTCT
TAGTTAGCGTCTTTTTAAGGCCTCTCAAGATTTTTGCAAACCATACCGTGTTCATGATGAGTAGTATTGTGGGCACGCCA
AATATCAGAACGCGGCTGAAGGTCCGCATCTGCATCACCTGTCAATAATTCAGATCAAATTTAGTTTCAGAATCATCGAT
GTGATATTTGCCACATAGTTATGTGCTGGAACAGGAGTACGAATTACGTC
>SNPs
----------------------------------------------S------------S------------S-------
-----------S----------------------------------------------------SSS-S-S-SSSSSS--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S----S------------------------------------------S-S--SSSSSSSSSSSS
SSSS------------------------S-S----------------S-----------------------S--------
----------------------S-------------------------------------SS------------------
------------------------------------------------------------------------S-------
-----SSSSS-S-------------------------S----S---S-----S----S-----------------S--S-
-SSSSSSSSSSSSSSSSS-------------------------S------S-----------------------------
-----S-----------------------------S-----------S------------S----------------S--
------------------------------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------S-------------------------------------S--S------------------SS----
--------------------------------------------------------------------------------
----------------------SSSSSS----------------------------------S----------S------
-------S---S--------------SSS---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------SS-S-----------------S-----------------------S---------S---------------
-S---------------------------------S-------------------------------------------S
--------------------------------------------------------------------------------
---------SSS---------------------------------S-S----------------------------SS--
SS------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-------------SSSSSSSSSS-----------------------------------------S---------------
---------S-----------S--S-----S------------------------------------S-S-SS-------
--------------------S----------------------------------SSS-S-----------------S--
-------------------------------------------------S------------------------------
--S-------------S--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---------------
-S----SS-SSS-----------S-------------SS---------SSSSSSSSSSS-----S---------------
----------------------------------------------------------S---------S-----------
---------------------S-------------------------------------------------S--------
-------------------------------------------------------S------S-----------------
----------------------------------------------------------S---------------------
------------------S-----------S-------SS-S-SSS-SSSS--SSSSS----------------------
S------------------------------S-SS-------S--------S----SSS---------------S-----
---S-----------------------------------------S----------------------S-----------
----------------------------------------------------------------SSSSSSSS--------
S------------------------S-----------------------------------------S------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
-------------------------------S--------S---------------------------------------
------------------------------------------------------------S-------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S---SSSS--SS
--------------S------------S----------------------------------------------------
----------------------SSSSSSSSS-----------------------S----SS----------------SS-
-----------------------------------------S----------------------------------S---
----S-------------------------------------S-------------------------------------
------------------------------------S---------------S---------------------------
--------------------------------------------------------------------------------
---------------S------------------------------------------------------S---------
-----------------------------------S--------------------------------S-----------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
----------S----------SS-----SS---S----------------
>forward_891
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ACATACTCC
TACCCGTGCCA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_3192
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GTCCCCTAG
ACGGTACTCCA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>forward_2332
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GGTGACGC
CATTTGTGATCG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_4393
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CATAAACC
CCTGGAGCAGCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
