>input_sequence_39986
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--------------------------------------------------------------------------ATGGAT
ATGGAGCTCGACGCCGCTCGCCACGGGTTCGCCAAGATGGGCTTCGGGTCCGTCAGCCTCTCATCTGT---CTGCTGCTT
GTCTGTACTATCCTTG-----CCCTTGGCTGGAGCAGTAGCTGA--------CTTCGTGGTGTGTGCTTGCAGGTGCAAG
CACTACCGGAGGCGGTGCAGGATCCGGGCGCCTTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACTACTCCAC
GGTCTCTGCTCTGCTCTGCTCCACCTCTCTTCTCTTTGCTCTCTTCTCTGGTCTGCTTGGGTTGGTGGTCCTCACGTTTC
TTTATTTCTTTGGATAATCTCTGCCTTTTCGTCTGCATCTTCTTCTTCTTGCTTGGATTGGGCTTAGAAAGACGGGCACG
AGCTCGACCGCCACGCAGTTGAATCGGTGCGCACTTCTCTCACTGCTTCCTTCCTCCTCTTCATTTC------------T
TATGTTACCAATGCCCGGATATCTTGTTTCTTTCTTGACTTCGCCTTCAACTTAATTTGTCGCTGACAAAACAACATTTT
CCTTGATCAATTTCCTCTCCTCCCGTAGGTTATATGCCTCGTCTGCGACACCGAGCAGCCGGTTAGCATCTGACGGCGAT
TCCCTCCCTAGTTTCTTCTTTCTTGTGCTGCTAACAGTTTAGTTTCAGAGTTTGGGTATAACACTAACAGATTG-----G
GTGGTGATCATCAGGTGGCGCAAGTGTGCAGCAACTGCGGCGTGTGCATGGGGGAGTACTTCTGCCGGGCGTGCAAATTC
TTCGACGACGATGTGAGAATGAGATCCATCGTCCCTGTCCCTGTCCCTGTCCCTGTCCCTGTGCTGGATTTG------GA
TTTGGTGGTGATTGGGTTGTTGCTGACAGGATCTTGCTGCTGCTGTGCAGGTCGACAAGGAGCAATACCACTGCAAAGAC
TGCGGCATCTGCAGGTAGGTCGTCCTGCCTATCATATGCTGAC-------------------------------------
-------------------------------------------------------------------------------T
CTCGCTTCCACTTTCAGTTGCCGAGCTGACT----GAAACTGTGAT------------------CAACAGAGTTGGAGGG
AAGGACAACTTCTTCCACTGCAAGAAGTGCGGTAAG-----------CATGATCTTTTCATGATACAGTCCTAATTTTGA
TAGACTCACTCCAATTCAAACTATGGATGTATC------CGTCGGGTGCCGCCGCCGCAGGATCGTGCTACTCGGTGACC
CTCCGGGACAAGCATGTCTGCATCGAGGGCTCAATGAAGAACAACTGCCCGATCTGCTACGAGTACCTGTTCGACTCCCT
GAGGGAGTCGTCGGTGCTGAGATGCGGCCACACCATGCACCTGCAGTGCTTCCACGAGATGCTCAAGCACGACAAGTAAT
TGCCCATGCCTTTCTATCCATCTCCCCTCCCCTCCCCTACCCACACATGCCATTCCTTGCGTGTGATCTTGTTTTTCTTT
CT--------TAGATAACGCTATCCTCGACGTATTTGCAGGTTCACTTGCCCCATGTGTTCTGTGTCCATCTTTGACATG
GAAAAATTCTTGAGGGCCTTAGATGCTGAGGTAGGTATTTCCTCAGTAAGATCCACAGCAAC-----GATCTCATCTTGG
GTTCCTTTTCGTGTGAATTTTCCCTTCACGTTCTTGGCCCCGGCCTGAGAAATTTTTTTTGTTATCTTTTTTTTTTGTCA
GATTGAGGCCAAGTTCTTACACATGGGAAAGGTCAGTGCCACATTTGCAACTCACATATTTATGA---------------
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------------------AAATTTTGAAACTTTAAAAATATACTTTCGATTTTCTTAAGAAAAGGGCTCCGACTAACCCA
GACTCATCTACCAATATTCGTCTAGTAGTAG----CCAGTTATATAAATCTGATGGCTTTCTGATG------------GC
ATGTGTTTGTTGGTCGGTGCAGGGATGGATCGTGTGCAACGACTGCTGGGACACGACCCGAGTGTATCCGGGCATGGCCG
GACAGAGAAAGTGTTGCCATTGCCAGTCCTACAACACCTGCAGGGTCGCTCCATCGGTGCTACCGGCCTAG---------
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------------
>chr4D_1_TraesCS4D01G064500
GCGATCGGCGGCGAAATGAATGAATATGAAAACTCTGGGCTTCATGATCCACATGAATGAGTACTTTATTGCC-------
-----CTGCAGCTGCAGGAGCTACGGCACCATGATCCTGATGCCTGGTAAAGAAACACGAAAGAAGGGGCGTCGGGTCGA
CCTTGACAGGACCGATCAACAAACCAACGTGCA-TTTATGCTCGGGGATCAGCCCCCGGCGTCAGTCAAACTGATGAGAT
ATCC------TACATTCAGAGGATTCGGGGCTTTCACGGGAAGCCGTCTGGGTCAGAGGTCTTCTTCCGTGCGCATGCTC
TCTGGTGAATGGTGACGATAGATA-TAATTCAGAGTGAGGGGAGGGGTTGACGCGTACGCTGTGGAGTTAGAATGCAGTG
ACCCGCCGGAGGAGTAAAGAATCGTCATCTT-----GAGTGCTTTGGGAGCTTCCATCTTTGG-C---CCGCACGCCACC
ACCTCCTTCCTGTAACAACAAAGCAACGCTACTGATAATTATACTTGTATGTTTATTGAATAAAAAAAGGGG--AAGAAA
GAAAGAAGCGCAAAGGCTCTCCTCCTGGATCTTGAATTCTTGATAAGTTAAAGAAATGGCAGTAGATCCAG-TATCTAGA
TCCTCTCAGCTCTGGAAACAATAGCCATGCAACTGTG------------------------------------GAACAAG
AAGAAGAAGAAGAGAAGAGAGGAAAGTTGAGAAGGGAAAACAATTGCGCCGAGCAAGGAAGGCTCTGCCTGCCAACAAGA
GCCTCCCTTTTACAGCGCCTGTCTCTTCTCTCCTCCTTCTATGACCCAATCCCCAACTCGACCCCCGTTTCTTTCCATTC
TCGGCAACGCACACCACCACCACCACCAGAGTAGTCGTCTGC-------CAGTGACAGTATAAAA-TAGAGACTCTCCTC
ACCCTCCTCGTAGCGAGCGAGCGAGCGAGCGCGGCAACAGGCAACAA-----------------GAGCAGAGGAGAAGCC
AGATCCGAA---------GCC------GCCGCCTCCGTCGAACCCGGACAAGAACAGCAATCTCGCCA------ATGGAT
ATGGAGCTCGACGCCGCTCGCCACGGGTTCGCCAAGATGGGCTTCGGGTCCGTCAGCCTCTCATCTGT---CTGCTGCTT
GTCTGTACTATCCTTG-----CCCTTGGCTGGAGCAGTAGCTGA--------CTTCGTGGTGTGTGCTTGCAGGTGCAAG
CACTACCGGAGGCGGTGCAGGATCCGGGCGCCTTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACTACTCCAC
GGTCTCTGCTCTGCTCTGCTCCACCTCTCTTCTCTTTGCTCTCTTCTCTGGTCTGCTTGGGTTGGTGGTCCTCACGTTTC
TTTATTTCTTTGGATAATCTCTGCCTTTTCGTCTGCATCTTCTTCTTCTTGCTTGGATTGGGCTTAGAAAGACGGGCACG
AGCTCGACCGCCACGCAGTTGAATCGGTGCGCACTTCTCTCACTGCTTCCTTCCTCCTCTTCATTTC------------T
TATGTTACCAATGCCCGGATATCTTGTTTCTTTCTTGACTTCGCCTTCAACTTAATTTGTCGCTGACAAAACAACATTTT
CCTTGATCAATTTCCTCTCCTCCCGTAGGTTATATGCCTCGTCTGCGACACCGAGCAGCCGGTTAGCATCTGACGGCGAT
TCCCTCCCTAGTTTCTTCTTTCTTGTGCTGCTAACAGTTTAGTTTCAGAGTTTGGGTATAACACTAACAGATTG-----G
GTGGTGATCATCAGGTGGCGCAAGTGTGCAGCAACTGCGGCGTGTGCATGGGGGAGTACTTCTGCCGGGCGTGCAAATTC
TTCGACGACGATGTGAGAATGAGATCCATCGTCCCTGTCCCTGTCCCTGTCCCTGTCCCTGTGCTGGATTTG------GA
TTTGGTGGTGATTGGGTTGTTGCTGACAGGATCTTGCTGCTGCTGTGCAGGTCGACAAGGAGCAATACCACTGCAAAGAC
TGCGGCATCTGCAGGTAGGTCGTCCTGCCTATCATATGCTGAC-------------------------------------
-------------------------------------------------------------------------------T
CTCGCTTCCACTTTCAGTTGCCGAGCTGACT----GAAACTGTGAT------------------CAACAGAGTTGGAGGG
AAGGACAACTTCTTCCACTGCAAGAAGTGCGGTAAG-----------CATGATCTTTTCATGATACAGTCCTAATTTTGA
TAGACTCACTCCAATTCAAACTATGGATGTATC------CGTCGGGTGCCGCCGCCGCAGGATCGTGCTACTCGGTGACC
CTCCGGGACAAGCATGTCTGCATCGAGGGCTCAATGAAGAACAACTGCCCGATCTGCTACGAGTACCTGTTCGACTCCCT
GAGGGAGTCGTCGGTGCTGAGATGCGGCCACACCATGCACCTGCAGTGCTTCCACGAGATGCTCAAGCACGACAAGTAAT
TGCCCATGCCTTTCTATCCATCTCCCCTCCCCTCCCCTACCCACACATGCCATTCCTTGCGTGTGATCTTGTTTTTCTTT
CT--------TAGATAACGCTATCCTCGACGTATTTGCAGGTTCACTTGCCCCATGTGTTCTGTGTCCATCTTTGACATG
GAAAAATTCTTGAGGGCCTTAGATGCTGAGGTAGGTATTTCCTCAGTAAGATCCACAGCAAC-----GATCTCATCTTGG
GTTCCTTTTCGTGTGAATTTTCCCTTCACGTTCTTGGCCCCGGCCTGAGAAATTTTTTTTGTTATCTTTTTTTTTTGTCA
GATTGAGGCCAAGTTCTTACACATGGGAAAGGTCAGTGCCACATTTGCAACTCACATATTTATGA---------------
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------------------AAATTTTGAAACTTTAAAAATATACTTTCGATTTTCTTAAGAAAAGGGCTCCGACTAACCCA
GACTCATCTACCAATATTCGTCTAGTAGTAG----CCAGTTATATAAATCTGATGGCTTTCTGATG------------GC
ATGTGTTTGTTGGTCGGTGCAGGGATGGATCGTGTGCAACGACTGCTGGGACACGACCCGAGTGTATCCGGGCATGGCCG
GACAGAGAAAGTGTTGCCATTGCCAGTCCTACAACACCTGCAGGGTCGCTCCATCGGTGCTACCGGCCTAGTAGCCATGA
TACCCGCTTCGGTGAACACTACGATTGTTTAGTACTAGCTGCCATTGATGTATTATTTGCAGTTCAACATGAACTGTGCA
GGCTGCAGAAGCATC---ATATACGGTACCGATTTATATGTACGTACGGTGCCAATTTGCGAGAAAGAAAGATGAATGGA
AAAACG-CCGTCTCGTTGCAGTTTCTAGGGGAATTTGATTGATGATATAGAAGTATATTGTT-----GGTTGTTGGTCAA
AGTTGGTCATCTTTTGAGAAAAGATCCCCCAGAAACTGGTTTGTGAAAAATGATTGGTTTCATATCACACATTCGTCCCT
ATGCATGAATGTATTGTACTACCTTGTAAATATTGATGTGAATGTAAAGCTTCTTATAATAGTTTGTCCTTCCCGTCAAA
AATCTCCAAGAATTATGAGCCAAAAGAACCTATAATGGGT-----TGTTTT-----TAGTTGCAAAGAATTATGTATGCT
GCACACATAGCTCACAATTATGAAAACAATGAACCAAG--GATAAGAGAAAGAGCGGAAAAAAAAAAGGAAAGCTTGTTG
TAAAACGGTCGGGCTGGAGAAAGGCTATTATGGAATAA---CATGGAAATCATCAC--AT-CCTTCTCAAAAGACTTCCC
CGATATCACTATGAGATGCAAGACCCGGACGGTTTAGACATTTAGTATACAGGAAAAGAAATGTCCTTACTTGTCAAAGA
TAATGAAAATGACCTGTCCCGCACTTTAGTGTACCAACTACTATGACAAGTTGACAACATATACTGCATGGATGAGGGTA
GAATCCCCCTTATGGTCTAATCAAATTTGTACCTAGCTATCTAGAAAATGATAATTCACTAAGGAGGAGGAATAAACATC
ACTATGTTGCTTGCTTGAGAATTTGGTTCGCTGATCGCTGGTATCAAAGTGTTTGTCTCAACCAT-GAATATCAAAATAT
CCACTCTGAAGTAATAGGCTGTT---------------------------------GTTCGAACTCATGATGTGTAAGTA
TCTGAATACTTC
>chr4B_1
GCGATCGGCGGCGAAATGAACGACTATGAAAACTCTGGGCTTCATGATCCGCACGATTGAATGTTTTACTGCC-------
-----CTGCCTGCAGCTGCGCCGTCCTGAT------CTGATTCCTGGTAAAGAAACACGAAAGAAGGGGCGTCGGGTCGA
CCTTGACAGGACCGATCAACAAACCAACCATGCGTTTATGCTCGGGGATCTGCCCCCGGCGTCGGTCAAACTGATGAGAT
ATG----------ATTCAGAGGGTTCG-----------------------------------------------------
---------------------------------------GGGC-----TGACGCGTACGCTGTGGAGTTAGAATGCAGTG
ACCCGCCGGAGGAGTAAAGAATCGTCATCTT-----GAGTGCTTTCGGAGCTTCCATCTTTCGCC---CCGCACGCCACC
ACCTCCTTCCTGTAACAA-AAAGCAACGCCGTTGATAATTATAGTAGTATGTTCATTGAATAAAAAAAGGGGGAAAGAAA
GCAAGAAGCGCAAAGGCTCTCCTCCTGGATCTTGAATTCTTGATAAGTTAAAGAAATGGTAGTAGGTCTAG-CATCTAGA
TCCTCTCAGCTCCGGAAACAAATAGCTCTTCAGTCATACTCCTACAACTGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAGAGAGGAA-GTTGAGAAGGGAAAACAATTGCACCGAGCAACGAAGGCTCCCT------------
-----CCTTTTACAGCGCCTGTCTCTTCTCTCCT---TCTATGACCCAATCCCCAACTCGACCCCCGTTTCTTTCCATTC
TCGGCAACGCACCCCACCACCACCAGACCAGAGTAGGCACAGTAGACAGCAGCGACAGTATAAAA-T----ACTCTCCTC
ACCCTCCTCCTAGCGAGCGAGCAAGCG----CGGCAACAGGCAACAA-----------------AAGCAGAGGAGAAGCC
AGATCCGAAGCCGCCGCCGCC------ACCGCCTCCGTCGAGCCCGGACAAGAACAGCAATCCCGCCA------ATGGAC
ATGGAGCTCGACGCCGCTCGCCACGGGTTCGCCAAGATGGGCTTCGGGTTCGTCGGCCTCCCCTCTGT---CCGCTACTT
GTCTGTACTAACCAACTAGTACCCTTGGCTGACGGGGAGACTGCTTCTTCGTCTTCGTCGTGTGTGCGCGCAGGTGCAAG
CACTACAGGAGGCGGTGCAGGATCCGGGCGCCCTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGACTCCAC
GGTCTCTGCCCTGCTCTGCTCTGCCTCTCTTCTCTTTGCTCTCTCCTCTGGTCTGGTTGGGTTGGTGGTCCTCACAATTC
TTTCGTTCTTTGGATAATCTCTGCCTTTTCATCTGCATCTTCTTCTTCTTGCTTGGATTGGGCTTAGAAAGACGGGCACG
AGCTCGACCGCCACGCAGTCGAATCGGTGCGCACTTCTCTCACTGCTTCCT----CCTCTTCATTTC------------T
TATACTCCC-----------ATCTTGTTTCTTCACTTCACCTT-CTTCAACTTGATTTCTCGCTAACAAAACAACATTTC
CTCTCCT---------------CCGTAGGTCATATGTCTCGTCTGTGACACCGAGCAGCCGGTTAGCATCTGATGGCGAT
TCCCTCTCTAGTTTCTTCTTTCTTGTGCTGCTACTAGTTTCAGAGTTGAGTTTGGGTATAACAGATT--GATTG-----G
TTGGTGATCGTCAGGTGGCGCAAGTGTGCAGCAACTGCGGCGTGTGCATGGGGGAGTACTTCTGCCGGGCGTGCAAATTC
TTCGACGACGATGTGAGAATGAGATCCATCGTT------CCTGTCCCTGTCCCTGTCCCTGTGCCCGATTTA------GA
TTTGGTGGTGATTGGGTTGTTGTTGATGGGATCTTGCTGCTGCTGTGCAGGTTGACAAGGAGCAATACCACTGCAAAGAC
TGCGGCATCTGCAGGTAGGTACT----CCTATCATATCCTCACAACTGATGCTTAATCGGGAGACTGAAAGCATACAAAA
CCAGGCCAAATTATGCAAGATTATACACAAAATTCACAAATGAGTTTCCACTTCCATTCAGTTCTACT--TTTGACACAT
CGCCCTGAAAGTTCAAGTTGCCGAGCTGACTAACTGAAACTGTGACACATGCATATCTATCTTCCAACAGAGTTGGAGGC
AAGGACAACTTCTTCCACTGCCACAAGTGCGGTAAGCATTCAACATTCATGATCCTTTCATGACACAGTCCTAATTTCAA
-----------CGATTCCAACTGTATATGTATCTCAATTCGTCGGGTGCCGCCGCCGCAGGATCGTGCTACTCGGTGACC
CTCCGGGACAAGCATGTCTGCATCGAGGACTCGATGAAGAACAACTGCCCGATCTGCTACGAGTACCTGTTCGACTCCCT
GAGGGAGGCGTCGGTGCTGAGATGCGGCCACACCATGCACTTGCAGTGCTTCCACGACATGCTCAAGCACGACAAGTAAT
CGCCCATGCGGCCATGC----------------CCCCTGCCCACACATCCCATCCCTTTCGTGTGATCTTGTTCTTCTTG
CTTG----GATAGATAACGCTATCCTCGACGTG-TTGCAGGTTCACTTGCCCCATGTGCTCCGTGTCCATCTTTGACATG
GAAAAATTCTTGAGGGCCTTAGATGCCGAGGTGAGTATTTTCTCAGTAAGATCCACAGCATCGGCATGATCTCATCTTGG
GTTCCTTTTCGTGTGAATTTTCTCTTCGTGTTCTTGGCCCCGGCCTGAGATTTTTTTT--GTATC----TTTTTTTGTCA
GATTGAGGCGAGTTTCTTACACATGGGAAAGGTCAGTGGCAAATTTGCAACTG---------------------------
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---------------------------------------------------------------------------ACCCA
GATTCATTTACTAAACTCTATAAATCCGATGAGACCCGGTTATATAAATCTGATGGTTTTCTGATGCCATTACTCCCGGC
ATGTGTTTGTGGGTGGGTGCAGGGATGGATCGTGTGCAACGACTGCTGGGACACGACCCGAGTGTATCCGGGCATGGCGG
GACAGAGAAAGTGTTGCCATTGCCAGTCCTACAACACCTGCAGGGTTGCTCCATCGGTATTGCCGGCCTAGTACCCA---
------CTTCGGTGGCCACTACGATTATTTAGTACTAGCTGCGATTGATGTATTATTTCCAGTTCAACATGAACTGTGGA
GACTGCAGAAGCATTATTATATACGGTACCAATTTATATGTACGTACGGTGCCAATTTGCGAGAAAGAAAGATGGATGAA
AAAACG-CCCTCTCGTTGCAGTTTCTAGGGGAATTTGATTGATGATATA----TAAGAAAGATGTTGGGTTATTGGTCAA
AGTTGGTCATCTTTTGAGAAAAGATCCCATGGAAACTGGTTTGTGAAAAATGTTTGGTTTCATATCACACATCCGTCCCT
ATGCATGAATGTATTA---TACCTTGTAAATATTGATGTGAACGTAAAGCTTCTTATAATAGTTTGTCCTTCCCGTCATA
AATCTTCAAGAATTATGAGCCAAAAGAACCTATAATGGGT-----TGTTTT-----TAGTTGCAAAGAGTTATGTATACT
GCACACATAGCTCACAATTATGAAAA-AATGAACCAAG--GATAAGAGAAAGAGTGGGGAAAAAAAAGGAAAGCTTGTTC
TAAAATGGTCGGGCTGGAGAAAGGCTATTATGGAATAA---CATGGAAATCATCAC--AT-CCTTCTCAAAAGACTTCCG
CAATATCACTACGAGATGCAAAACCTGGAGGTTCTAGACATTTGGTATACAGGGAAAAAAAAATCCTTACTTGTCAAAGA
TAATGAAAACGACGAGTCTCGCACTTTAGCGTACCAACTACCATGAC--------AGCATATACTACATGGATGAGGGTA
GAATCCCCCTTATGGTTC-ATCAAATTTGTACTTAGCTAGTTAGAAAATGATAATTCACTAAGGAAGATGAATAAACATC
ACTGTTTCTTGC-T-TGAGAATTTGGTTTGT-------TGGTATCAAAGTGTTTGTCTCAACCAT-GAATAACAAAATAT
CCACTCTGAAGTAATAGGCTGTTTCCCCGCAAAAAAAGAGAGAGTAATAGGCTGTTGTTCGAACTCATGATTTGTAAGTA
TCTTAATACTTC
>chr4A_1
GCGATCGGCGGCGAAATGAATGAGTATGAAAAATCTCGGCTTCATGATCCACATCCACATGAATGAAATACTCTACTGCC
CAGTGCTGCCTGCAGCTGCGCCATCCCGAT------CC--TGCCTGGTAAAGAAACAGGGAAGAAGGGGCGTCAGGTCGA
CCTTGACAGGACCGATCAACAAACCAACGTACA-TTTATGCTTGGGGATCTGCCCCCGGCGTCAGTCAAACTGATGAGAT
ATACTGTACGTACATTCAGAGGATTCGGGGCTTTCACGGGAAGCCGTCCGGGTCAGAGGTCTTCTTCCGCGCGC-----C
TCCGGTGAGCGGTGACGATAGAGTGTAATTCAGAGTGATGGGC-----TGACGCGTGCGCAGTGGAGTTAGAACGCAGTG
ACCCGCCGGAGGAGTAAAGAATCGTCATCCCATCCCGAGTGCTTTCGGAGCTTCCATCTTTGGCCCGCCCGCACGCCACC
ACCTCCTTCCCGTAACAA-AAAGCAACGCTGTTGATAATTGCTTACGAGTAT----------AAACAAGAGG--GAGAAA
GAAAGATGCGCAAAGGCTCCCCTCCTGGATCTTGAATTCTTGATAAGTTAAAGAAATGGCAGTAGGTCTATCCATGTAGA
TCCTCTGCGCTCCGGAAACTATACT-TCTTCAGTCATA---CTACAACTGTAGAGGAAGAAGAGAAGAGAGGGGTAGGC-
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----------------------------------AGGCACGCTAGACTGCAGTGACAGTATAAAAAT----GCTCTCCTC
GCCCTCCTA----------AGCGAGCG----CGGCAACAGGCAGCAACGGCAGTAGAAGGCTAGAAGCAGAGCAGAAGCC
AGATCCGAAGCCGCCGCCGCCGCCGCCGCCGCCTCCGTCGAGCCCGGACAAGAACAGCAATCTCGCCAATGGATATGGAG
ATGGAGCTCGACGCCGCTCGCCACGGGTTCGCCAAGATGGGCTTCGGGTCCGTCCGCCTCTCCTTTCGCCCCTGCTACTT
GTCTGTACTACTAT--------CCTTGGCTGGAGCAGTAGCTGA--------CCTCGGGGTGTGTGGTCGCAGGTGCAAG
CACTATAGGAGGCGGTGCAGGATCCGGGCGCCCTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGACTCCAC
GGTCTCTGCTCTGCTCTGCTCTTCCTCTCTTCTCCTTGCTCTCTTCTCTGGTCTGCTTGGGTTGATGATGCTCACATTTC
TTTCGTTCTTTGGATAATCTCTGTCTTTCCAACTGCATCTTGTTCTT----CTTGGATCGGGCTTAGAAAGACGGGCACG
AGCTCGACCGCCACGCAGTTGAATCGGTGCGCACTTCTCTCACTGCTTCCT----CCTCTTCATTTCTCATACTATCTAT
TATGTTCCCAGTGCCCGGAAATCTTGTTTCTTGACTTCACCTT-CAGC-------TTTCTCGCTAACAAAACAACATTTC
CTTTT-T---------------CCGTAGGTTATATGTCTCGTCTGTGACACCGAGCAGCCGGTTAGCATCTGACGGCGAT
TCCCCAC----TTTCTTCTTTCTTGTGCTGCTAATAGTCTAGTTTCAGAGTTTGGGTATAACACTAACAGTTTGGCACTG
GTGGTGATCATCAGGTCGCGCAGGTGTGCAGCAACTGCGGCGTGTGCATGGGGGAGTACTTCTGCCGGGCGTGCAAATTC
TTCGACGACGATGTGAGAATTGAGA------------------TCCCTGTCCCTGTGCCTGTGCTGGATTTGGATTTGGA
TTTGGTGGTGATTGGGTTGTTGTTGATGGGATCTTGCTGCTGCTGTGCAGGTCGACAAGGAGCAATACCACTGCAAAGAC
TGCGGCATCTGCAGGTAGCTACT----CCTATCATATCTTCCGAACTGATGCTTAATTGAGAGACTGAGAGCACATGAAA
CCAGGCCAAATTATGCAACATTGT--ACAAAATTCACAAATGAGTCTTCACTTTCATTCAGTTGTTGTACTTTGACACAT
CGCCCTGAAAGTTCAAGATGCCGAGCTGACTAACTGAAACTGTGATACATGCATCTT----TTCCAACAGAGTTGGAGGC
AAGGACAACTTCTTTCACTGCCACAAGTGCGGTAAGCAAGCATGATCCTTATTCCTTCCATGACACAGTCCGAATCACTC
C-GATTCACTCCGATTCCAACCATATATGTATCTCAATCCGCCGGGTACCGCCGCCGCAGGATCGTGCTACTCGGTGACC
CTCCGGGATAAGCATGTCTGCATCGAGGACTCGATGAAGAACAACTGCCCGATCTGCTACGAGTACCTGTTCGACTCCCT
GAGGGAGGCGTCGGTGCTGCGATGCGGCCACACCATGCACTTGCAGTGCTTCCACGAGATGCTCAAGCACGACAAGTAAT
CGCCCATGCCTTCCTATCG-------------------ACCCACACATCCCATCCCTTTCGTGTGATCTTGTTCTTCTTG
CTTGGATAGATAGATAACGCTATCCTCCACGTATCTGCAGGTTCACTTGCCCCATGTGCTCCGTGTCCATCTTTGACATG
GAGAAATTCCTGAGGGCCTTAGATGCCGAGGTAAGTATTTTCTCAGTAAGATCCGTAGCAAGCATGATTTTCATCTTGGT
TCC--------------TTTTCTCTTCATGTTCTTGGCCCCGGCCTGAGATTTTTTTTTTGTATC----TCTTTTTGTCA
GATTGAGGCGAAGTTCTTACACATGGGAAAGGTCAGTGACACATTTGCAACTCACATATTTTTGTAGCCCTCAAATAAAC
ATGTTTCTTTGTGAAATTTTATAGGAACATAATAAGAATGCATATGTACTTGTGGAAAAGAGTACTGCATAATTTTTTCC
GCAAAAAAAGTACTGCATAATTTCTGGAAATTTGAAAATATACT-----TTTTCTTAAAAAAAAGGCTTCAACTGACTCA
GACTCATTACCACTATTCT-TCTAGTAGTAG----CAAGTTATATAAATGTGATGGTTTTCTGATGCCATTACTAGTGGC
GTGTGTTTGTGGGTGGGTGCAGGGATGGATCGTGTGCAACCACTGCTGGGACACGACCCGGGTGTATCCGGGCATGACGG
GACAGAGAAAGTGTTGCCATTGCCAGTCCTACAACACCTGCAGGGTTGCTCCATCGGTGCTGCCGGCCTAGCAGCCACGA
TACCCGCTTCGGTGAACGCTACGATTATTTAGTACTAGTTGCGATTGATGTATTATTTCCAGTTCAACATGAACTGTGCA
GACTGCAGAAACATTATTATACACGGTACCGATTTATATGTATGTACGGTGCCAATTTGTGAGAAAGAAAGATGAATGGA
AAAACACCCGTCTCGTTGCAGTTTCTAGGGGAATTTGATGATATGTAAGTAAGTAAGTAAGATGTTGGGTT---------
-GTTGGTTATCTTTTGAGAAAAGATCCCACAGAAACCGGTTTGTGAAAAATGATTGGTTTCATATCACACATTCGTCCCT
ATGCATGAATGTATTG---TACCTTGTAAATATTGATGTGAATGTAAAGCTTCTTATAATAGTTTATCCTTCCCGTCTGA
--------------------------------------------------------------------------------
----------------------AAAC-AATGAACCAAG--GATAAGAGAAAGAGCG-----AAAAAGGAAAAGCTTGTTC
CAAAATGGTCGGGCTGGAGAAAGGCTATTATGGAATAA---CATGGAAATCATCAC--AT-CCTTCTCAAAGGACTTCTC
CAATATCACTATGAGATGCAAAACCCGGAGGTTCTAGACATTTTGTATACAT-GAAAAAAAAATCCTTACTTGTCAAAGA
TAATGAAAATGACCAGTC--------TAGTGTACCAACTACTATGGC--------AACATATACTACATGGATGAGGGTA
GAATCCCCCTTATGGTCT-ATCAAATTTGTACCTAGCTATCTAG-AAATGATAATTCACTAAGGATGAGGAATAAACATC
ACTATGTTGCTTGCTTGAGAATTTGGTTCGT-------TGGTATCAAAGTGTTTGTCTCAACCAC-GAAGTTCAAAATAT
CCACTCGGAAGA---------------------------------AATAGGCTGTTATTAGAACTCATGATTCGTAAGTA
------------
>chr3A_3363
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-------------------------------------------------------------GTTTATTCTTCCAGCCATA
GATCCTCAAGAATTATGAGCTAAAAGAACCTATAATGGGTATTGTTGTTGTTGTTGTTTTTGCAAAGAATCATGTATATT
GCGCACATAGCTCACATCTATGAAAACAATAATAAATCAAGATAAGAGAAAGAGC---AAAAAAAAAGGAAAGCTTATTC
TAAAATGATCAGGTTGGATAAAGACTATTATAGAGTAA---CATGAAAATCATCGC--ATGACATTTCAAAAGACTTCCT
CAATCTCCGTACGAGA-GCAAAACCCGGAGGCCCTACATATTTGGTACACAG-GAGAAGAAAT---TTACTTGTGAAAGA
TAATGAAAATGATCAGTCCCGCACTTTAGTGTACCAACTACTATGAA--------AACATATACTACATGAATGAGGGTA
GAATACCCCTTATGGTCT-ATCAAATTTGTACTTTGCTATCGAGAAAATGATGATTCACTAACGAACAGGAATAAACATC
TCTGTGCTGCTTGT-CGACAATTTGGCTCTT-------TGG--TCAAAGTGTTTGTCTCAACCACCGGCGATCAAAATAT
CCACTCTTAAGT---------------------------------AATCGGTTGTTGTTAGAACTCATGATATGTAAGTA
TTTAAGTACTTC
>chr3D_3363
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-------------------------------------------------------------GTTTATTCTTCCAGCCATA
GATCCTCAAGAATTATGAGCTAAAAGAACCCATAATGGGCGGG---GTTTT-----TTTTTTCAAAGAATCATGTATATT
GCACACATAGCTCACAATTATGAAAACAATAATAAACCAAGCTAAGAGAAAGAAC--AAAAAAAAAAGGAAAGCTTATTC
TAAAATGATCAGGTTGGAGAAAGGCTATTATAGAATAATAACATGAAAATCATCGC--ATGCCATTTCAAAAGACTTCCT
CAATCTCCGTACGAGA-GCAAAACCCAGAGGCCCTACATATTTGGTATATGG-GAGAAGAAAT---TTACTTGTGAAAGA
TAATGAAAATGATCAGTCCTGCACTTTAGTGTACCAACTACTATGAC--------AACATATACTACATGGATGAGGGTA
GAATACCCCTTATGGTCT-ATCAAATTTGTACTTTGCTATCGACAAAATGATTATTCACTAACTAACAGGAATAAACATC
ACTGTGCTGCTTGC-CGACAATTTGGCTCTT-------TGG--TCAAAGTGTTTGTCTCAACCACCGACGATCAAAGTAT
CCACTCTTAAGT---------------------------------AATAGGTTGTTG-----------------------
------------
>chr3B_3405
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-----------------------AAGAACCTATAATGGGTGTTGTTGTTTT-----GTTTTGCAAAGAATCATGTATATT
GCGCACATAGCTCACAATTATGAAAACAATAATAAACCGCGTTAAGACAAAGAGC--AAAAAAAAAAGGAATTCTTATTC
TAAAATGACCAGGCTGGAGAAAGGCTATTATAGAATAA---CATGAAAATCATTGCATATGCCATTTCAAAAGACTTCCT
CAATCTCCGTACGAGAA-CAAAACCGGGAGGCCCTACATATTTGGTATACAG-GAGAAGAAAT---TTACTTGTGAAAGA
TAATGAAAATTATCAGTCCCGCACTTTAGTGTACCAACTACTATGAC--------GACATATACTACATGGATGAGGATA
GAATACCCCTTATGGTCC-ATCAAATTTGTACTTTGCTATCGAGAAAATGATGATTCACTAACGAACAGGAATAAACATC
ACTGTGCTGCTTGC-CGACAATTTGGCTCTT-------TGG--TCAAAGTGTTTGTCTCAACCACCGACGATCAAAATAT
CCACTCTTAAGT---------------------------------AATAGGTTGTTGTTAGAACTCATGATATGTAAGTA
TTTAAGTACTTC
>chr3B_3405
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-----------------------AAGAACCTATAATGGGTGTTGTTGTTTT-----GTTTTGCAAAGAATCATGTATATT
GCGCACATAGCTCACAATTATGAAAACAATAATAAACCGCGCTAAGACAAAGAGC--AAAAAAAAAAGGAATTCTTATTC
TAAAATGACCAGGCTGGAGAAAGGCTATTATAGAATAA---CATGAAAATCATTGCATATGCCATTTCAAAAGACTTCCT
CAATCTCCGTACGAGAA-CAAAACCGGGAGGCCCTACATATTTGGTATACAG-GAGAAGAAAT---TTACTTGTGAAAGA
TAATGAAAATTATCAGCCCCGCACTTTAGTGTACCAACTACTATGAC--------GACATATACTACATGGATGAGGATA
GAATACCCCTTATGGTCC-ATCAAATTTGTACTTTGCTATCGAGAAAATGATGATTCGCTAACGAACAGGAATAAACATC
ACTGTGCTGCTTGC-CGACAATTTGGCTCTT-------TGG--TCAAAGTGTTTGTCTCAACCACCGACGATCAAAATAT
CCACTCTTAAGT---------------------------------AAAAGGTTGTTGTTAGAACTCATGATTTGTAAGTA
------------
>SNPs
-----------------------S---------------------------------------S----------------
---------SSSSSSSS-S--S-SSS-SSSSSSSSS--------------------------------------------
------------------------------S-------------------S-----------------------------
--S---------------------------------------------S--------------------S----SSSSS-
--S-----SS------------SS--------------S---SSSSSS--------------------------------
---------------------------------------------S----------------------------------
------------------S-----------SS-----------S-S-------S--------------------------
-----------------------------------------------------------------S--S---S-------
------------S----------SS-SSSSS-S-SSS---------------------------------------S---
-------------SS---------S----------------------S--------S--------SSSSSSSSSSSSSSS
SSSSS-----------------------------SSS-------------------------------------------
------------S------------SSSS--SSSSS-SSS---------------------------SSSS---------
---------S-----------------SSSS---------------------------------S---------------
-----------------------------------------S-------------------------------------S
------------------------------------------------------S-------S-------------S---
----------S---SS----------------------------------------------------S-----------
------S-------------------------S---------------------------------------S-------
---------------------SS----------------------------------------------------S----
---SS-------------------------S-------------------------------------------------
---------------------------------------------------SSSS-------------------------
------S---S--------S------------SSS-SSSSSSSS---------S----S-----S--------------S
-S--SS-SSSSSSSSSSSSSSS--------------S--------S----------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------SSSSSSS-----------------------------------------
----------------------S---SS----------------------------------------------------
--------------------SS-SSSS----------S--S---------------------------------------
--------------------------------------------------------------------------------
-S-S--SSS-S--SS----------------------------------------------------------------S
---------------------S-S------------------------------S--------S-------------SS-
SS--S-------S----S------SS------------------------------------------------------
----------------------------S---S-----------------------------------------------
-------S--------------------------------S---------------------------------------
S-----------S-----SSSSSSSSSSSSSSS---------------S----S----S--------------S-----S
----------------------------------------------------------S--S------------------
--------------------------S------S------S---------------------------------------
----------------------S-----S---------------------SS----------SSSSSSS-----------
---------S----------------------------S----------------------S--S---------------
--------------------------------------------------------------------------------
--------------------S--S--S--S---S----------SSSSS---------S----S----S-S---S-----
-------S---S--SS-SSS------------------------------------S-----------------------
----------S---S---------------------------------------------------------------S-
----------------------------------------------S--------------S---------------S--
--------------------------S---------------S---------------S---------------------
-S------------S-----------------------------------------------------------------
-------------------------------------------------S-----SS-SSSS---------S--------
----------------------------S---------------------------------------------------
----------------SSS-----------------------------------------------------------S-
-----S-----------------------------------------------------------------------S--
-------------------------------------------------------------------------------S
-----S--------------------------------------------------------------------------
-S-------------------S-------S-S-S---------S---------S---S---SS-----------------
--------------S--------------------------------SSSSSSSS----------S--------------
------------------S----------------------------------------------S--------------
------------------------------SSSSSSSS------------------------------------------
-----------------------------------------------------------------------S--------
---S--------
>forward_915
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---------------ACCACCACCACCAGAGTAGT---------------------------------------------
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------------
>reverse_2118
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-------------------------------------GCTGACTCTCGCTTCCACTT-----------------------
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>forward_2023
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---GGTGGTGATTGGGTTGTTGC---------------------------------------------------------
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>reverse_3359
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------------------------------------------------------------------------------CG
GACAGAGAAAGTGTTGCC--------------------------------------------------------------
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------------
>forward_2694
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----------------------------------CCCTACCCACACATGCCATT--------------------------
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------------
>reverse_4000
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-------------------------------------------------------------------------------G
TAAAACGGTCGGGCTGGA--------------------------------------------------------------
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------------
