>input_sequence_39934
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------------------------AAGGCAAAGGTGAAGCCTACATTGCTGCATGCCTTCTTCCCTCTGCATCTCATAAC
TTTGTTCAACCATGGTCTCCTTCTGGAGTTTCCTTCTGTCCTACCCTGAAGTTTTCCTAGCCATTGCTTGCTTCTTCTGC
CTCTCCCTCTTCCGCCTTGTCCGACACTGCCACAAGAGTGACCTCCCGGTGAACTGGCCTGTTATTGGGATGCTTCCCTT
CCTCGTGAGAAATCTGTACCAAATTCATGACAGTGTCACCGATATGCTCCGCGAGGCGGGATGCACCTTCAGGATCATTG
GCCCGTGGTTCCTCAACATGAGCTTCTTGGCGACCTGCGACCCAGCCACTGTCAACCACTGCTTCAATACCAACTTCAAC
AACTACCCAAAAGGCAGTGAGTTCGCCGAGATGTTCGACATCCTAGGTGATGGGCTCCTTGTGGCGGACTCTGAGTCCTG
GGAGTACCAGCGCCGTGTGGCGATGCAAGTCTTTGCTAGCCGCGCCTTCCGGTCCTTCTCCATGTCCACCATCACGAGGA
AGGCCGGCACAGTCTTGTTACCCTTCCTTGACCACATGGCTAAGCACGGCTCACAGGTTGAGCTGGAGGGTGTCTTCATG
AGGTTCTCACTTGATGTCTCGTACTCCACTGTGTTTGCAACTGACCTTGACTGCTTGTCTGTGTCTCACCCGATCCCTGC
GTTTGGCCAAGCCACAAAGGAAGTCGAGGAGGGAATGCTGTTCAGGCATGTTGTTCCACCAAGTTTGTGGAAGCTCTTGA
GAATGCTGAATGTTGGCAGCGAGAAGAAGATGGCGAATGCAAGGGTGGTGATCGACCAATTCATCTATGAGGAAATCGCG
AAGCGGAAGGCACAAGCAACCAAGCAATGCCAGGGAGACGTGCTGTCCATGTACATGAACTGGCCCATGGATCCCAGCAT
GAGTGAGCAGCAAAAGACCCTGTTCCTGCGCGACACAGTGGTGGGGTTCATCTTTGCTGGGAAGGACCTCGTTGCCGTTA
CACTCACGTGGTTCTTCTACATGATGTGCAAGCATCCGCATGTTGAGGCGAAGATCCTCGAGGAGATCAAGGCCCTGCAG
AGCACTACATGGCCAGGGAACCTCTCTGTCTTCGAGTGTGACAAGCTCCGGCCTGCTATTTACCTGCAAGCTGCACTCCT
CGAGACACTCAGGTGACATACCCCTTTCACCTTGTCTAGCTCCTCCCAACCATCTGACTAACCCGTGCTGTGCATGTGTT
GTAGGCTCTTCCCGGCGACCCCATTCGAGGAGAAGGAGGCCCTCAACGATGATGTCCTCCCAGACGGTACCATGGTGAGC
AAGGGCACAAGGATCGTGTTCTCGCTCTACGCCATGGGGAGGATCAAAGGGATATGGGGCAAGGATTGCATGGAATTCAG
ACCAGAGCGGTGGATCTCGAAGAGCGGGCGCCTTCGGCACGAGCCAAGCTACAAGTTCCTGTCCTTCAATTCCGGGCCCA
GGAGCTGCCTTGGGAAGGACCTTGGTCTCAGCAACATGAAGATGGCAGCTGCTTCCATCATATACAACTTCAAGGTGGAG
CTGGTGGAAGGCCACGCCGTGATGCCCGAGAGCGCTGTGATACTGCACACACGGAACGGGATGATGGTTCGGCTCAAGAG
AAGGGAGCTGGTAGCTGCTTGATCTTTACTGCTATCTGTTTTCTTACTTGGGTTATTTATGCGTATCGAACAGAACTAAA
TGCAGAATCCATGAGATGGAATGGAATAACTAAACATAATCTGCTTGTAGTGTTGAGATTGTCACCGTG--ACAAGCTAT
CTGTTCGTAGTGTTGGAATTGTCACCATGTAACAAGCTATCTGTTCTTAGTGTCGGAATTGTCACCATGTCATGGGAACA
GAATATTATAGTGATTGGTCGTGTGATGATCTTTTGAGTTATTTTCATGTAAAATTGTATGCATGTTACTTATAAATATG
TACTGTATCT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr3D_1_TraesCS3D01G117100
AATTCAGCAGTAATTTTTCTTGAGCATTATGTTTCAGGGCCTGTCTAGAACACAATATCTCCTTTACAATTTTGTATGCT
GCTAAGAGTAAGAGTGCTACCATCTAAATATA--CAAAATTAAGACTGCTACTAAATTCATACTTGGTGGGTATTACAGA
GCACACACCACAGTTCTTTGGTGGTTCACTAGGATAGGTTCCATCCCTTTGTTACAGACCTGCTAACAAGAGAAA-CTGA
ACAGGAAATGACAGTCTATCTATTGTTGCCTGTATTAATTGGTCCGCAAGAGTTATGATTTGGTTTATATGTAGCGATTT
TCAGCAGTTACTCGGCTGATGAACACTGTCATAAGAGTGCTCCAACAACGTTGCCCTTAGGTAATGTCTCTGGTTAGGAA
GCTAAGACGTGTCGGTCTGATGCAAACA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AGTAGCTG
GTTTCCCTCTTGCCACGGGACATACTGGCATCACAAAATTTACATGAGTGTAATCCCACACAATTTGGGTGTTTGCATGG
GAAGCGAATCAATCAACTTATTAGGATTGGGATCAGTTTCAAGGATTACAGAAATGCTCTGCTCCTAGTTGCAGTTAGTT
GGGGGGTCTAAAGAGGATTATAACCAGTCTTAAGAAAACAAGATTAGAATTAGAAACTGCAA-AATTAAATGGTTATATG
TGTGTGAGCGCATAAAGTTGTAA-GGGTCAAACCGTCAAAGTTGATTTTCTATAATGCTTATATATTC---TAACATGTC
AACATGGCTTATCTGATCTGTTAATTAAGTGGGTACTGACAGGTATAGAATGTCTAGTTCTTCAGAAATTAGATGCTGAA
GAAAGCTGTTTGTGGTAGAAGAC------------CTCCAGAATTATAGCAGTTATATCAGGACATATGAATGTTGTGAA
TCACTGCACCCTAAACTCTCGGGAACTGATCGCCTATCCCACGGGGAAGACACTCATATGCAGTTTCTGTATATATCAAT
ACCAGCCGTGCATTTGACATTGGCAAGGCAAAGGTGAAGCCTACATTGCTGCATGCCTTCTTCCCTCTGCATCTCATAAC
TTTGTTCAACCATGGTCTCCTTCTGGAGTTTCCTTCTGTCCTACCCTGAAGTTTTCCTAGCCATTGCTTGCTTCTTCTGC
CTCTCCCTCTTCCGCCTTGTCCGACACTGCCACAAGAGTGACCTCCCGGTGAACTGGCCTGTTATTGGGATGCTTCCCTT
CCTCGTGAGAAATCTGTACCAAATTCATGACAGTGTCACCGATATGCTCCGCGAGGCGGGATGCACCTTCAGGATCATTG
GCCCGTGGTTCCTCAACATGAGCTTCTTGGCGACCTGCGACCCAGCCACTGTCAACCACTGCTTCAATACCAACTTCAAC
AACTACCCAAAAGGCAGTGAGTTCGCCGAGATGTTCGACATCCTAGGTGATGGGCTCCTTGTGGCGGACTCTGAGTCCTG
GGAGTACCAGCGCCGTGTGGCGATGCAAGTCTTTGCTAGCCGCGCCTTCCGGTCCTTCTCCATGTCCACCATCACGAGGA
AGGCCGGCACAGTCTTGTTACCCTTCCTTGACCACATGGCTAAGCACGGCTCACAGGTTGAGCTGGAGGGTGTCTTCATG
AGGTTCTCACTTGATGTCTCGTACTCCACTGTGTTTGCAACTGACCTTGACTGCTTGTCTGTGTCTCACCCGATCCCTGC
GTTTGGCCAAGCCACAAAGGAAGTCGAGGAGGGAATGCTGTTCAGGCATGTTGTTCCACCAAGTTTGTGGAAGCTCTTGA
GAATGCTGAATGTTGGCAGCGAGAAGAAGATGGCGAATGCAAGGGTGGTGATCGACCAATTCATCTATGAGGAAATCGCG
AAGCGGAAGGCACAAGCAACCAAGCAATGCCAGGGAGACGTGCTGTCCATGTACATGAACTGGCCCATGGATCCCAGCAT
GAGTGAGCAGCAAAAGACCCTGTTCCTGCGCGACACAGTGGTGGGGTTCATCTTTGCTGGGAAGGACCTCGTTGCCGTTA
CACTCACGTGGTTCTTCTACATGATGTGCAAGCATCCGCATGTTGAGGCGAAGATCCTCGAGGAGATCAAGGCCCTGCAG
AGCACTACATGGCCAGGGAACCTCTCTGTCTTCGAGTGTGACAAGCTCCGGCCTGCTATTTACCTGCAAGCTGCACTCCT
CGAGACACTCAGGTGACATACCCCTTTCACCTTGTCTAGCTCCTCCCAACCATCTGACTAACCCGTGCTGTGCATGTGTT
GTAGGCTCTTCCCGGCGACCCCATTCGAGGAGAAGGAGGCCCTCAACGATGATGTCCTCCCAGACGGTACCATGGTGAGC
AAGGGCACAAGGATCGTGTTCTCGCTCTACGCCATGGGGAGGATCAAAGGGATATGGGGCAAGGATTGCATGGAATTCAG
ACCAGAGCGGTGGATCTCGAAGAGCGGGCGCCTTCGGCACGAGCCAAGCTACAAGTTCCTGTCCTTCAATTCCGGGCCCA
GGAGCTGCCTTGGGAAGGACCTTGGTCTCAGCAACATGAAGATGGCAGCTGCTTCCATCATATACAACTTCAAGGTGGAG
CTGGTGGAAGGCCACGCCGTGATGCCCGAGAGCGCTGTGATACTGCACACACGGAACGGGATGATGGTTCGGCTCAAGAG
AAGGGAGCTGGTAGCTGCTTGATCTTTACTGCTATCTGTTTTCTTACTTGGGTTATTTATGCGTATCGAACAGAACTAAA
TGCAGAATCCATGAGATGGAATGGAATAACTAAACATAATCTGCTTGTAGTGTTGAGATTGTCACCGTG--ACAAGCTAT
CTGTTCGTAGTGTTGGAATTGTCACCATGTAACAAGCTATCTGTTCTTAGTGTCGGAATTGTCACCATGTCATGGGAACA
GAATATTATAGTGATTGGTCGTGTGATGATCTTTTGAGTTATTTTCATGTAAAATTGTATGCATGTTACTTATAAATATG
TACTGTATCTTATGTGCATCTGCCTATCAAAAGTGCTTCTGATGGCCCTCCTTGTGAAATTGAGTAAGAAAAGCAATTCT
TGGACCTGCACCTGTTGAGTTCTCTTCAGTTATTATGTGAGAATAGAACAGGCGACGCTCATTTTGTTTCAGAGGCTATT
CATCAAATGATCATATGTTTTGTTCGCTCTTAAAAGTAGCATTGGCTTGCCCCTGCTCATGTTTTCCCAAAAGTTGATGG
TCGTCAGAGTGGTTACTTGATGCAGTTCACATTGAAGTTTTTTTATAGTGAAAGTGACGCTCCTGCGGCCTGAGGAGTTT
AATTTCGTCGCTGTTAAAT--------CAGAACAGATTTCCATTCGGAATGATCCATTCAAAGTTCACAAGTAGTATATC
ATTTTATACTAGTTAAGAACACTCTTTGCTTATTCGCAAAAAAAAAAAACTCTCTTTGCTTAAGATTTCTATAAGTTGGG
TAGAGCCTGGTGATACTGCAGCTATGGTAATATTGACAGGCCATCAGGCAAGCTTTCTGCATCACAAGCTCCATTTGGTA
CACTGACAGGGCCGATAGTTCCGCATATATTCATAGGGATATATATTTGGGCACTTTTGACTTGTACTAGAAGGGACTGT
AGATTGGAGAAATTAGGATGATGGACATCAATGGCAGCATCTGTTTGTGCAACATGTTGCCGAACTGGTGACATAATCAG
AAATTTCAAACTCTCTGCATGAGGTGCTCTCTGTACAAAGCTAACAGATTCGGAGAGTACAGTCCCGTCACGTTGGCCG-
AACTAACAGGACGGCCCATTACTCTCCTCCAGTAATTTGGGCCGCATAAGGAGTTCCACCGTACTCACGGGCCGCCAGTC
CAAAGTGGGGGATCCGCTGGCTTCCGGCTGGTGGTGGGGAGAACGCTACGTTCGTTTAGTCCCACATCGCCTAGCGAGAG
AGGGAGCGACCAGTTTATAAACCCGCTCGCTGCAGCTAACTCGTCCCTTCAGGGACATC
>chr3A_1
AATTCAGCAGTCGTTTTTCTTGAGCATTATGTTTTAGGGCCTGTCTAGAACACAATATCTCCTTTACAATTTTGTATGCT
GCTAAGAGTAAGAGTGCTACCATCTAAATATATACAAAATTAAGACTGCTGCTAAATTCACACTTGCTGGGTATTACAGA
GTACACACCACAGTTCTTTGGTGGTTCACTAGGA-----TCCATCCCTTTGTTACAGACCTGCTAACAAGAGAAA-CTGA
GCAGGAAATGACAGTC-----------------ATTTATTGGTCCGCAAGAGTTATGATTAGGTTTATATGTAGCGA--T
TCAGCAGTTATTTGGCTGATGAACACTGTCATAAGAGTGCTCTAACAAGGTTGCCCTTAGGTAATCTCTCTGGTTAGGAA
GCTAAGACGTGTCGGTCTGATGCAAACA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AGTAGCTG
GTTTCCCTCTTGCCTCGGGACATACTGGCATCACAAAGTTTACATGAGTGTAATCCCACACAATTTGGGTGTTTGCATGG
GAAACGAATCAATAAACATATTAAGATTGGGATCAGTTTCAAGGATTACAGAAATGCTCTGCTCCTAGTTGCAGTTAGTT
GGGG-GTCTAAAGAGGATTCTAACCAGTCTTAAGAAAACAAGATTAGAATTAGGAACTGCAAAAATTAAATGGTTATATG
TGTCTAAGCGCATAAAGTTGTAATGGGTCAAACCGTCAAAGTTGATTTTCTATAATGCTTATATATTCTAATAACAAGTC
AACATGGCTGATCTGATCTCTTAATTAAGTGGGTACTGACAGGTATAGAATGTCTAGTTCTTCAGAAATTAGATGCTGAA
GAAAGCTGTTTGTGGTAGAAGAC------------CTCCAGAATTATAGCAGTTATATCAGGACATATGAATGTTGTGAA
TCACTGCACCCTAAACTCTCGGGAACTGATCGCCTATCCCACGGGGAAGACACTCATATGCAGTTTCTGTATATATCAAT
ACCAGCCGTGCATTTGACATTGGCAAGGCAAAGGTGAAGCCTAAATTGCTGCATGCCTTCTTCCCTCTGCATCTCATAAC
TTTGTTCAACCATGGTCTCCTTCTGGAGTTTCCTTCTGTCCTACCCTGAAGTTTTCCTAGCCATTGCTTGCTTCTTCTGC
CTCTCCCTCTTCCGCCTTGTCCGACACTGCCACAAGAGTGACCTCCCGGTGAACTGGCCTGTTATTGGGATGCTTCCCTT
CCTTGTGAGAAATCTGTACCAAATTCATGACAGTGTCACCGATATGCTCCGCGAGGCGGGATGCACCTTCAGGATCATTG
GCCCGTGGTTCCTCAACATGAGCTTCCTGGCGACCTGCGACCCAGCCACTGTCAACCACTGCTTCAACACCAACTTCAAC
AACTACCCAAAAGGCAGTGAGTTCGCCGAGATGTTTGACATCCTAGGTGATGGGCTCCTTGTGGCGGACTCTGCGTCCTG
GGAGTACCAGCGCCGTGTGGCGATGCAAGTCTTTGCTAGCCGTGCCTTCCGGTCCTTCTCCATGTCCACCATCACGAGGA
AGGCCGGCACAGTCTTGTTACCCTTCCTTGACCACATGGCTAAGCATGGCTCACAGGTTGAGCTGGAGGGTATCTTCATG
AGGTTCTCACTTGATGTCTCGTACTCCACTGTGTTTGCAACTGACCTTGACTGCTTGTCTGTGTCTCACCCGATCCCTGC
GTTTGGCCAAGCCACAAAGGAAGTGGAGGAGGGAATGCTGTTCAGGCATGTCGTTCCACCAAGTTTGTGGAAGCTCTTGA
GAATGCTCAAAGTCGGCAGCGAGAAGAAGATGGCGGATGCAAGGGTGGTGATCGACAAATTCATCTATGAGGAAATTGCG
AAGTGGAAGGCACAAGCAAACAAGGAATGCCAGGGAGACGTGCTGTCCATGTACATGAACTGGCCCATGGATCCCAGCAT
GAGTGAGCAGCAGAAGACCCTGTTCCTGCGCGACACAGTGGTGGGGTTCATCTTTGCTGGGAAGGACCTCATTGCCGTTA
CACTCACGTGGTTCTTCTACATGATGTGCAAGCACCCGCATGTTGAGGCGAAGATCCTCGAGGAGATCAAGGCCCTGCAG
AGCACTACATGGCCAGGGAACCTCTCTGTCTTCGAGTGTGACAATCTCCGGCCTGCTACTTACCTGCAAGCTGCACTCCT
CGAGACACTCAGGTGAGATACCCCTTTCACCTTGTCTAGCTCCTCCCAACCATCTGACTAACCCATGCTGTGCATGTGTT
TTAGGCTCTTCCCGGCGACCCCATTCGAGGAGAAGGAGGCCCTCAACGACGATGTCCTCCCAGATGGTACCATGGTGAGC
AAGGGCACAAGGATCGTGTTCTCGCTCTACGCCATGGGGAGGATCAAAGGGATATGGGGCAAGGATTGCATGGAATTCAG
ACCAGAGCGGTGGATCTCGAAGAGCGGGCGCCTTCGACACGAGCCAAGCTACAAGTTCCTGTCCTTCAATTCCGGGCCCA
GGAGCTGCCTTGGGAAGGACCTTGGTCTCAGCAACATGAAGATGGCAGCTGCTTCCATCATATACAACTTCAAGGTCGAG
CTGGTGGAAGGCCATGCCGTGATGCCCGAGAGCGCTGTGATACTGCACACACGGAACGGGATGATGGTTAGGCTCAAGAG
AAGGGAGCTGACAGCTGCTTGATCTTTACTGCTATCTGTTTTCTTACTTGGGTTATGTATGTGTATCGAACAGAACTAAA
TGCAGAATCCATGAGATGGAATGGAATAACTAAATATAATCTGTTTGCAGTGTTGAGATTGTCACCATG--ACAGGCTAT
CTGTTCGTAGTGTTGGAATTGTCACCATGTAACAAGCTATCTGTTCGTAGTGTTGGAATTGTCACCATGTCATGGGAACA
GAATATTATGGTGATTCGTCATG-----------TGAGTTATTTTCATGTAAAATTGTATGCATGTTA------------
-ACTGTATCTTATGTGCATCTGCCTATCAAAAGTGCTTCTGAGGGCCCTCCTTGTGAAATTGAGTGAGAAAAACATTTCT
TGGACCTGCACCTGTTGATTTTTCTTCAGTTATTATGTGAGAATAGAACAGGTGACGCTCATTTTGTTTCAGAGGCTATT
CAGCAAATGATCATATGTGCTCTTCGCTTTTAAAAGTAGCATTGGCTTGCCCCGGCTCATGTTTTCCCAAAAGTT-----
--------------------------------------------------------------------------------
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-----------------------------------------------------------
>chr3B_24
-----------------------GCATTAGTTTTTAGGGCCTGTCTAGAACAAATCATCT---TTACAATTTGATATGCT
GCTAAGAATAAGAGTGCCACCATCCAAAC--ATACAAAATTGAGACTGCTACTAAATTCATACTTTGTGGTTATTACAGA
GTACACACCACAGTTCTTTGGTGGTTCACT------------------TTGTTACAGACCTGCTAACAAGAGAAAACTGA
ACAGGAAATGACAGTCCATCTATTGCTGCCTATATTTATTGGTCCGCAAGAGCTATGATTTGGTTTATATGTAGCGG--T
TCAGCAGTTATTCGGCTGGTGAACACTGTCATAAGAGTGCTCCAACAAGGTAGGTAATG---------TCTGGTTAGGAA
GCTAAGACGTGTCGGTCTGATGCAAACAAGTAGCTCGTTTCCCTCTTGCCACAGGACACACTGGCTCCAAGTGGTTAAAA
TGTATTCCTATCCTGCCATGTAATGAAAGTGGAACCTATGAATTGCTTAAAAATTGCCCATTTCTTGCAAGGATCTGATA
TGCCATCACATCTTTATTTAGGCTGCTGTAGGGCGAAATCAAAGTCATTTAGCTTATTTTTTCATTCTAGCATGTATAAT
GACTCGTGGCATCAGTTTCTAGGGCCTGTTTAGAACACATCATCTCCTTTACAATTTGGTATGCTGCTAAGAGTAAGAGT
GCTACCATCTAAAAGTAGACTAAGAGTGCTACTAGTTTTAAACAAGATTATAAAGGCTGTTACAGAGTACACACCACTCT
CTTTGGTGGTTCACTAGGACTCATCCCTTTGTTACAGGCCTGCTAACAAGAGAATCTGCACAAGAAATGGTGGTCTATAT
TTATTGGTCTGCCAGAGTTAGCGATATGGTTTATATTTAGTGATTCAGCAGTTACTTGGATGATGCACTCTGTCATAAGA
ATACTCCAGCAAGGTTGCCCTTAGGTAATGTCTCTACTTAGGAAGCTAAGACGTATCGGTCTGATGAAAACAAGCAGCTC
ACTTCCCTCTTGCCACGGGACATACTGGCATCACAAAATTTACATGAGAGTAATCCCACACATTTTGGGTGTTTGCATGG
GAAACAAATCATTCAACAGATTAGGATTATGATCAGTTTTAAGACTCGAAGAAATGTTCTGTCCCTAGTCGCAGCCATTT
ATGGTCTA-AAAGAGGATTATACAGA-TCTTAAGAAAACAACATTAGAATCAGAAACTGCAAAA-TTAAATGGTTATTTG
TGAGCAAGTGCATACAGTTGTGATGG--------GTCAACGTTGATTTTCTATAATGTGTATGTATTCGAAAAC---GTC
AACACAGCTTATCTGATGTGTTAATTAAGTGTGTATCGACAAGTATAGAATGTCTAGTTCTTCAGAAATTGGATGCTGAA
GAAAGCTGTTTGAGGTAGAAGACTAATGCTATGGCCTCCAGAATTATAGCAGTTACATTAGGACATATGAATGTTGTGAC
TCACTGCATCCTAAACTCTCGGAAACTGATTACCTATCCCACGGGGAAGACACTCATATGCAGTTTCTGTATATATCAAT
ACCAGCCATACATTTGACACTGGCAAGGCAAAGGTGAAGCCTAAATTGCTGCATGCCTTTTTCCCTCTGCATCTCATAAC
TTTGTTCAACCATGGCCTCCTTCTGGAGTTTCCTTCTGTCCTACCCTGAGGTTTTCCTAGCCATTGCTTGCTTCTTCTGC
CTCTCCCTCTTCCACCTTGTCCGACACTGCCACAAGAGTGACCTCCCGGTGAACTGGCCTGTTCTTGGGATGCTTCCCTT
CCTCGTGAAGAATCTGTACCACATTCATGACAGGGGCACCGATATGCTCCGAGAGGCGGGATGCACCTTCAGGATCATTG
GCCCGTGGTTCCTCAACATGAGCTTCTTGGTGACCTGCGACCCAGCCACTGTCAACCACTGCTTCAACACCAACTTCAAC
AACTACCCAAAAGGCAGTGAGTTCGCCGAGATGTTTGACATCCTAGGTGATGGCCTCCTTGTGGCAGACTCTGAATCCTG
GGAGTACCAGCGCCATGTGGCGATGCAAATCTTTGCAAGCCGTGCCTTCCGGTCCTTCTCCATGTCCACCATCACGAGGA
AGGCCGGCACAGTCTTGTTACCCTTCCTTGACCACATGGCTAAGCATGGCTCACAGGTTGAGCTGGAGGGTGTCTTCATG
AGGTTCTCACTTGATGTCTCGTACTCCACTGTGTTTGCAACTGACCTTGACTGCTTGTCTGTGTCTCACCCGATCCCTGC
GTTTGGCCAAGCCACAAAGGAAGTGGAGGAGGGAATGCTGTTCAGGCATGTCGTTCCACCAAGTTTGTGGAAGCTCTTGA
GAATGCTCAAAGTCGGCAGCGAGAAGAAGATGGCGAATGCAAGGGTGGTGATCGACCAATTCATCTACGAGGAAATCGCG
AAGCGGAAGGCACAAGCGACCAAGCAATGCCAGGGAGACGTGCTGTCCATGTACATGAACTGGACCATGGATTCCAGCAT
GAGTGAGCAGCAGAAGACCCTGTTCCTGCGCGACACAGTGGTGGGGTTCATCTTTGCTGGGAAGGACCTTGTTGCTGTCA
CACTCACGTGGTTCTTCTACATGATGTGCAAGCACCCGCATGTTGAGGCGAAGATCCTCGAAGAGATCAAGGCCCTGCAG
AGCACCACATGGCCAGGGAACCTCTCTGTCTTTGAGTGCGACACGCTCCGGCCTGCTATTTACCTGCAAGCTGCACTCCT
CGAGACACTCAGGTGACATACCCCTTTCACCTTGTCTAGCTCCTCCCAACCATCTGACTAACCCATGCTGTGCATGTGTT
TTAGGCTCTTCCCAGCGACCCCATTCGAGGAGAAGGAGGCCCTCAACGACGATGTCCTCCCAGATGGTACCATGGTGAGC
AAGGGCACAAGGATCGTGTTCTCGCTCTACGCCATGGGGAGGATCAAAGGGATATGGGGCAAGGATTGCATGGAATTCAG
ACCAGAGCGGTGGATCTCGAAGAGCGGGCGCCTTCGGCACGAGCCAAGCTACAAGTTCCTGTCCTTCAATTCTGGGCCCA
GGAGCTGCCTTGGGAAGGACCTTGGTCTCAGCAACATGAAACTGGCGGCTGCTTCCATCATATACAACTTCAAGGTCGAG
CTGGTGGAAGGCCATGCCGTGATGCCCGAGAGCGCTGTGATACTGCACACACGGAACGGGATGATGGTTCGGCTCAAGAG
AAGGGAGCTGGCAGCTGCTTGATCTTTACTGGTATCTGTTTTCTTACTTGGGTTATATATGCGTATTGAACAGAACTAAA
TGCAGAATCCATGAGATGGAATGGAATAACTAATTATAATCTGTTCGTAGTGTTGGAATTGTCACCATGTAACAAGCTAT
CTGTTCGTAGTGTTGGAATTGTCACCATGTAACAAGCTATCTGTTCGTAGTGTTGGAATTGTCACCGTGTCATGGGAACA
GAATATTATAGTGATTGGTCCTGTGATGATCTTTTGAGTTACTTTCATGTGAAATTGTATGCATGTTACTTATAAATATT
TACTGTATCTTATGTGCATCTGCCTATCAAAAGTGCTCCTGAGGGCCCTCCTTGTGAAATTGAGTAAGAAAAGCATTTCT
TGGACCTGCACCTGTTTTGTTTTCTTCAGTTATTATGTGAGAATAGAACAGATGACGCTCATTTTGTTTCAGAGGCTATT
CTTCAAATGATCATATGTTTTGTTCGCTTTTAAAAGTAGCATTTGCTTGCCCCTGCTCATGTTTTCCCAAAAGTTGATGG
TCGTCAGAGTGGTTACTTGATACAGTTCACATTGAAG-TTTTTTATAGTGAAAGTGACGCTCCTGCAGTCTGAGGAGTTT
AATTTCGTCTCTGTTATTCTGTTAAACCAGAACAGATTTCCATTTGGAATGATCCATCCAAAGTTCATAAGTACAGTACA
GTAGTACTTTTATACTA----------------------------------CTCTTTGCTTAAGATTTCTA--AGTTGGG
TACAGCTTGGTGATACTACAGCTATGGTATAC-TGACAGGCCGTCAGGCAAGCTTTCTGCATCACAGGCTCCATTTGGTA
CACTGACAGGGCCGATAGTTTCGCATATATTTGTAGGGATATATATTTGGGCACTTTTGACTTGTACTGGAAGGGACTGT
AGATTGGAGAAATTAGGATGATCGACATCGACGGCAGCATCTGTTTGTGCAACATGTTGCCGAACTGGTGACATAATCAG
AAATTTCAAACTCGATGCATGAGGAGTACAGTCCCGTCACGTTT-------GGAGAGTACAGTCCCGTCACGTTTTGCAA
AACTAACAGGACGGCCCATTACTCTCCTCCAGCAATTTGGGCCGCATAAGGAGTCCCACCGTACTCACGGCCCGCCACTC
CGAAATGTGGGATCCGCTGGCTTCCGGCTGGTCGGGAGGAAAACGCTACGTTCGTTTAGTCCCACATCGCCCAGCGATAG
AGTGAACGACCAGTTTATAAGCCCGCTCCCTGCAGCAGACTTGTCCCTTCGGGGACATC
>SNPs
-----------SS---------------------S---------------------------------------------
--------------------------------------------------------------------------------
-S--------------------------------SSSSS-----------------------------------------
----------------S--------S-----S----S----------------------------------------SS-
----------S-------------------------------------S----------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-------------S--------------------------------------------------------------
----S---------------------------------------------------------------------------
-----S----------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------S--------------------------------------------
------------------------------------------S-------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
------------------------S--------------------------S----------------------------
-------S--S--S------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
S------------------------------------------------S--------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------S-----------------------------------------------------------------
-----------S--------------------------------------------S-----------------------
----------------------------------S--------S----------------------S-------------
----------------------------------------------S------S--------------------------
--------------------S----------------------------------------------------------S
------------------------------------------S--------------------------------S----
---------------------S------------------------------S---------------------------
----------------------------S---------------------------------------------------
---------------------S---------------S----------------------------S-S-----------
---------S------SSS-------------------------S------------S---------S-----SSS--SS
S-SS--SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------SS-------
--S---S----------S-----------SSSS---------S-----------------------S-------------
--------------------S----------SS-----------------------------------S-----------
----------------------S------S-S------------------------------------------------
-------------SS---------S-SS-SS-SSSSSS-SS-SSSSSSSSS-----------------------SSS-S-
--------------------------------S---------------------S---------------S------S--
-S--S--S------------------------S-S-S---S------------------------------S-----S--
--S--S--------------S-------S-------SS---S--------S--------
>forward_1124
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTGGGTGTTTGCATGG
GAAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_2036
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CGACATCCTAGGTGATGGGC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>forward_1205
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CCTAGTTGCAGTTAGTT
GGGGG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------
>reverse_2414
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------TGGCAGCGAGAAGAAGATGG-----------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------
>forward_2345
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----GCCAAGCCACAAAGGAAGTC-------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_4073
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------AAGTTGGG
TAGAGCCTGGTG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
