>input_sequence_39866
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-----------------------------------------------------------------------------ATG
GCTCCTGCTCGGGTTGGCCGGTTCCAGGTATTGCTTCTTCTTCGCTTGGTTTTTCTTCAGTTCTGATGAAATTGTTTCTT
GGTTGGCATGGTTGATATGCTACTAGATCTTTCATGAAGTGTTTCTTTCTTGGTGCTGCTATTGTTTCCTCTTCTTCCTT
TGACCCTTTTCTTGGGAGCTGAAACCTGTTTTTAGTACTTGTCTGTTTCCTTTTTTGGTTTCGGGCCTTGACCTGCTCGA
CTGTTTACCATGATTAACCTCTAAAGTTTGCTGAAGATCAAAGGAGAACACATGGAGGTGCACAGTCAGCACAGTTAGAT
CGATTTCTAAGGAGTAGTTTTGTACTTTATAGCAATATATAAGAGGATGATTGTTTGCTAGAGACAATTATAGGAAGTGG
ACGGGTACTTGCTTTCTTTGAGGTGTCCTGTCTGTAAAGTTTCTCCATATTTGTCAGGATCATTCAATCATCACTTTTTT
TCTTGGGTTCAGAAAATCAGCTTTGGTTGCTTGTACCT------TATGGATCATGCCTTTGAACTAC-TTTTTTCTCTGA
AATATATGGCGTTCGCACATAGGTGCATCCTCGAAGGGAGATTCTTCGTTCAAAGTCAATGCTAGCTTAAATTCAGCAAA
AATATGTTGATTATTTTCAGTCGCACGAGTTACTGGGTTTTAGAAGTAAAGCAGATAATCATGTTCATCAGAACTGCT-A
TGTTAACTTACCTTGTAC--------------------------------------------------------------
---------------------AAATTATGTATGGAACCCAGAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CATATCTCT
GCACAAAAGTTCGAAGTACTTCTCTGCTCTGTCAGTTACTACACCTGTATATGACATCTAACTGTCTTGGGCTTCTCCAA
TTGCTTTTTGCATGACTTTCATAGTTGATAAAACTATTTTAAATGATTGCAGATGTCTAATCTCTCAGAGCCCTCAAAAG
AAGATGGTTCAGTCGAGAAAACTGGAGCTTGGAATAACACATGGAGCACTCTTATGCGCCACGCTTCAGTCTATGGTGTG
GCTGCTGGTTATTGCCTGTCAGCATCTCTGCTCTCCATTATCAACAAATGGGCAATCATGAAGTTTCCCTACCCTGGAGC
ACTGACAGCCTTACAGTACCTCACTAGTGTTGCTGGAGTTCTCCTGTGTGGACAGCTAAAGCTTATTGAGCCAGATAGGC
TGAATTTGAGGACCATGTGGAAGTTCCTACCTGCTGCTGTTATGTTCTACATCTCAATCTTCACAAACAGCGAGCTCCTG
ATGCATGCCAATGTGGACACTTTCATCGTGTTTCGGTCTGCTGTGCCGATATTTGTGGCCATTGGGGAGACACTTTACCT
TCACCAACCATGCCCATCATTCAAGACATGGCTCTCACTTTCCACTATACTTGGTGGAAGTGTGATATATGTTTTCACAG
ATAACCAGTTCACCCTGACTGCTTACAGCTGGGCAATAGCCTATCTAGCGAGCATGTCTATTGATTTCGTGTACATCAAG
CACGTCGTCATGACCATCGGGTTGAACACATGGGGTCTTGTGCTCTACAACAACCTTGAGGCTCTGTTGTTGTTCCCCCT
TGAGCTCCTTATAATGGGAGAGTTTAATCAGATGAAGGTCGACAGCTCCAAGATGACAACAAACTGGCTATCGTTCGACG
TGGTCCTTCCTGTTGCTCTGTCATGCCTGTTTGGGTTATCTATATCCTTCTTTGGATTCTCCTGCAGACGGGCCATCTCT
GCTACTGGATTTACGGTGCTCGGTATAGTGAACAAGCTCCTGACCGTCGTGATCAATCTGCTTATCTGGGACAAGCATGC
GTCCCTTGTGGGGACAATTGGGCTCTTGATATGCATGTCTGGTGGTGTTCTCTACCAGCAATCGACCACAAAGCCCAAGG
TGCCCAAGATCGAGCCAAAGGAAGAGGACGATGAAGAGGGGCAGAATTTGCTGCAGATTCAGCCCGGGCATGAGAGCAAC
CCAAGTCAAAAGCATTCCTC---ATAA-----------------------------------------------------
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>chr4A_1_TraesCS4A01G058700
CCGCCGCTCTTCGCTCGACCCCTCCACCCGCTCTCCCTCCTCGACCGCCGGCGGATCCGTCCAGGAGCGGCGCATGTGAC
TTCGACCACAAACGAAGGTGAGCCGCCTCCCGCGAGGTTCTACTTCCACCCCCGTCCCCCCTCTGTTCAGGCGTCAAACT
CCGATCTTGGCCCGTGGTTACAGTTCACAGTTGCGACGTGTTCCGCTTCGCT--------GCTAAAAACTGTAGTGGATA
TTCCGTGGTCCTGACCGGCGGCTTGCGT----CCACCTAACGATCTCCAGTTCCTCCTCTCCGAATCATTTGATGCCATT
CCTTCCGTCCGCCACATGTATGCATGTTTCAGCGACTAACTCCAGCGCTTCAATCATAATCATGGCGCGTCGCAGCAGTC
GGTTGAGCTGGCTCGATCGCGAGGCCCTCGTCAGCAGCTAGCGAGTGCAGGGGAACACCCCGTGCGCCCACAGCCACTTT
TTTAACTTGC-------------------------GTCACGTCGCGGTAGTTGAGGGGCATCTCTTCTTCCAGTTGAGTT
CGCCTCTCCCCACAGGCTGCGCGGGGTGTGGGGGAAGAAGCTCCCCTGTCTTCCTGAGGTAGTGCGTCGCTATGCTAATT
TTGTTTCCTTGCGGGCAACTGGCTAGCACGTTCCATGATTGCGACCTCGTCTTGATTGACTTGGCCAAACCGCTTAGGTG
TTGTGCTGAATATTCTTGCACAATTCTCTTACCCGTTCTCCGATCTGATGGCCACTGGCTGATGCGCTTGTGACGTGCTC
CTACCATGTTTGACTCACATGCCGAACATGGCCGTCGTGGGCAAATGGATCGTTCCGTGTGGCCACCTTATATGAGAGCT
TATTAGCTGATTGGCCTTAGCTAGGTGGTTGTTGGCTTGTTGCATACTGGTCTTCGTTCCTCCTTTGCCACCTTAAGCCC
TGACCCTCGGCTTTGTTTAGAAGGATACATGCTTCGTTGCTAGAGCGCTTGCTGTTGTTGGATTTGGGCTCGGGATCATG
GCTCCTGCTCGGGTTGGCCGGTTCCAGGTATTGCTTCTTCTTCGCTTGGTTTTTCTTCAGTTCTGATGAAATTGTTTCTT
GGTTGGCATGGTTGATATGCTACTAGATCTTTCATGAAGTGTTTCTTTCTTGGTGCTGCTATTGTTTCCTCTTCTTCCTT
TGACCCTTTTCTTGGGAGCTGAAACCTGTTTTTAGTACTTGTCTGTTTCCTTTTTTGGTTTCGGGCCTTGACCTGCTCGA
CTGTTTACCATGATTAACCTCTAAAGTTTGCTGAAGATCAAAGGAGAACACATGGAGGTGCACAGTCAGCACAGTTAGAT
CGATTTCTAAGGAGTAGTTTTGTACTTTATAGCAATATATAAGAGGATGATTGTTTGCTAGAGACAATTATAGGAAGTGG
ACGGGTACTTGCTTTCTTTGAGGTGTCCTGTCTGTAAAGTTTCTCCATATTTGTCAGGATCATTCAATCATCACTTTTTT
TCTTGGGTTCAGAAAATCAGCTTTGGTTGCTTGTACCT------TATGGATCATGCCTTTGAACTAC-TTTTTTCTCTGA
AATATATGGCGTTCGCACATAGGTGCATCCTCGAAGGGAGATTCTTCGTTCAAAGTCAATGCTAGCTTAAATTCAGCAAA
AATATGTTGATTATTTTCAGTCGCACGAGTTACTGGGTTTTAGAAGTAAAGCAGATAATCATGTTCATCAGAACTGCT-A
TGTTAACTTACCTTGTAC--------------------------------------------------------------
---------------------AAATTATGTATGGAACCCAGAT-------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------CATATCTCT
GCACAAAAGTTCGAAGTACTTCTCTGCTCTGTCAGTTACTACACCTGTATATGACATCTAACTGTCTTGGGCTTCTCCAA
TTGCTTTTTGCATGACTTTCATAGTTGATAAAACTATTTTAAATGATTGCAGATGTCTAATCTCTCAGAGCCCTCAAAAG
AAGATGGTTCAGTCGAGAAAACTGGAGCTTGGAATAACACATGGAGCACTCTTATGCGCCACGCTTCAGTCTATGGTGTG
GCTGCTGGTTATTGCCTGTCAGCATCTCTGCTCTCCATTATCAACAAATGGGCAATCATGAAGTTTCCCTACCCTGGAGC
ACTGACAGCCTTACAGTACCTCACTAGTGTTGCTGGAGTTCTCCTGTGTGGACAGCTAAAGCTTATTGAGCCAGATAGGC
TGAATTTGAGGACCATGTGGAAGTTCCTACCTGCTGCTGTTATGTTCTACATCTCAATCTTCACAAACAGCGAGCTCCTG
ATGCATGCCAATGTGGACACTTTCATCGTGTTTCGGTCTGCTGTGCCGATATTTGTGGCCATTGGGGAGACACTTTACCT
TCACCAACCATGCCCATCATTCAAGACATGGCTCTCACTTTCCACTATACTTGGTGGAAGTGTGATATATGTTTTCACAG
ATAACCAGTTCACCCTGACTGCTTACAGCTGGGCAATAGCCTATCTAGCGAGCATGTCTATTGATTTCGTGTACATCAAG
CACGTCGTCATGACCATCGGGTTGAACACATGGGGTCTTGTGCTCTACAACAACCTTGAGGCTCTGTTGTTGTTCCCCCT
TGAGCTCCTTATAATGGGAGAGTTTAATCAGATGAAGGTCGACAGCTCCAAGATGACAACAAACTGGCTATCGTTCGACG
TGGTCCTTCCTGTTGCTCTGTCATGCCTGTTTGGGTTATCTATATCCTTCTTTGGATTCTCCTGCAGACGGGCCATCTCT
GCTACTGGATTTACGGTGCTCGGTATAGTGAACAAGCTCCTGACCGTCGTGATCAATCTGCTTATCTGGGACAAGCATGC
GTCCCTTGTGGGGACAATTGGGCTCTTGATATGCATGTCTGGTGGTGTTCTCTACCAGCAATCGACCACAAAGCCCAAGG
TGCCCAAGATCGAGCCAAAGGAAGAGGACGATGAAGAGGGGCAGAATTTGCTGCAGATTCAGCCCGGGCATGAGAGCAAC
CCAAGTCAAAAGCATTCCTC---ATAAGCTTACTTTACCTTCCCTCGGCAACCCATTCGTGGTATATCTCAGATGAGGAA
TCTTGAACATGCTGTAGAACATCGGTGTTTCAAGAGAAACTAAATTTCATTCTACAATATCTTTGTTATTGTATACTGTT
TTTCATTGGTTAGACAGGATTGTGGTGGTGG---TGTAGGGTACCAGACACCTCAACATACCAGGGTCGAATCCCATGTA
TACTGAACCATGTATGCTATTTACCATATTCCAGAAATACAAAGGATGTACTTATTCACTCTGCGGCAATAGTTTTTTCT
TCTCCTTTGTGGGTGAAGCAAATTTTGTCTGAC-------TTCATCAGTATTATTCATGGTTCATGAATAGGTAGACATA
CTCTGACGGCTTATGCAAGTCTGAAACTTCTGATTTTGGTAGTCTTGTTGGTTGGCCAATTATATTGTACTTCCTCCGTT
TGGGTGTAAAAGGCCATTT---------------------------------------ATATTTTGTTGATCAGTTGTTT
TTTCTAGAAAACGCACAGGCTATGTGTGTCATTTGTACTAAGACAGAATAGAGTATTTACAAGACAAATGGGATA--GGG
CGAATGAACGGCAAAAGCCCATAGGATTTTGACATAGTTCCTCGCAAATGTCGGCAAGAGCAGTGTCCGCCCTGGTTTTG
TAGATGGCAACCTGTCGGCTGCTAGCCACCTTGTAAAAAAGTTGCGCATTTTGCTCGAGCCAAATGTCG--CAGTACATA
GATAGAGGACTGGCATGAGGTTGAACTTGACCTGTCATCTCATTAACTGCTGTCCCTGCTTAACATGTCG-AATCTAATC
AGTTTG---------AGAAGAGTCACTCCATCAAAAGGGTGGC-------------------------------------
-------------------------------AGATCATTTCCGGTTGTTGACAACACAGTGGACAGTGCGGTTGGTGCTG
CAGCCCTCCACGTTGAAGCCTATTGCATGTCCAACATGGGTCGCGAAGGGCAAGCC--------AGGCGAAAAGCTTCGC
TTGGAGATGGGCTCGCGAAGACAAAAGTCTAAACCGCTTGGGTGAG
>chr4D_1
CCACCGCTCTTCGCTCGACCCCTCCACCCGCTCTCCCTCCTCGACCGCCGGCGGATCCGTCCAGGAGCGGATCATGTGAC
TTCGACCACAAACGAAGGTGAGCCGCCTCCGGCGAGGTTCTCTTCCCGTCCCCGTCCCCCTCTCTATATCTCAAACT---
-CGATCTTGGCTGGTGGTT-------ACAGTCGCGACGTGTTCCGCTTCGCCACGAAGCCGCTGAAAACTGTAGTGGATA
TTCCGTGGTCCTGGCCGGCGGCTTGGTTCCACCCACCTAACGATCTCCAGTTCCTCCTCTCCGAATCATTTGATGCCATT
GCTTCCGT----CACATGGATGCATGTTTCAGCGGCTATCTCCAGCGCTTCAATCTTAATCATGGCGCGTCGCAGCAGTC
GGTTGAGCTGGCTCGATCGCGAGGCCCTCATCAGCAGCTAGCGAGTGCAGGGGAACACCCCGTGTGCCCGCAGCCACTTT
TTTAACTTGCGTCTTGGAGGCATAGGGGCGGGGCTGTCACGTCGCGGTAGTTGAGGGGCATCTCTTCTTCCAGTTGAGTT
CGCCTCTCCCCACAGGCTGCGCGGGGTG-GGGGAAAGAAGCTTCCCTGTCTTCCTGAGGTAATGCGTCGCTATGCTAATT
TTGTTTCCTTGTGGGCAACTGGCTTGCACGTTGCATAATTGCGACCCCGTCTTGCTTGACCTGGCCAAACCGCTTAGGTG
TTGTGCTGAATTTTCTTACAAAATTCTCCGATC-------------GATTGCCATTGGCTGATGCGCTTGTGACGTGCTC
CTACCATGTTTGACTCACATGCCGAACATGGCCGTCGTGGGCAAATGGATCGTTCCGTGTGGCCACCTTATATGAGAGCT
TATTAGCTGATTGGCCTTAGCTAGGTGGTTGTTGGCTTGTTGCATACTGGTCTTCGTTCCTCCTTTGCCACCTTAAGCCC
TGACCATCGGCTTTGTTTAAAAGGATACATGCTTCGTTGCTAGAGCGCTTGCTGTTGTTGGATTTGGGCTCGGGATCATG
GCTCCTGCTCGGGTTGGCCGGTTCCAGGTATTGCTTCTTCTTCGCTTGGTTTTTCTTCAGTTCTGATGAAATTGTTTCTT
GGTTGGCATGGTTGATATGCTACTAGATCTTTCATGAAGTGTTTCTTTCTTGGTGCTGCTATTGTTTCCTCTCCTTCCTT
TGACCCTTTTCTTGGGAGCTGAAACCTGTTTTTACTACTTGTCTGTTTCCTTTCTTGGTTTCGGGCCTTGACCTGCTCGA
GTCTTTACCATGATTAACCTCAAAAGTTTGCTGAAGATCAAAGGAGAACATATGGAGGTGCATAGTCAGCACAAATAGAT
CATTGTCTAAGGAGTAGTTTTGTACTTTATAGAAATATATAAGAGGATGATTGTTTGCTAGAGATGATTCTAGGAAGTGC
ACGGGTACT--------------TGTCCTGTCTGTAAAGTTTCTCCATACTTGTCAGGGACATTCAATCAGCACCTTTTT
TCTTGGGTCTGGAAAATCAGCTTTGGTTGCTTGCACCTTATATATATGGATCATGCCTTTGAACTATTTTTTTTCTCTGA
AATACATGCCGCTCGTACATAGGTGCTTCCTCGTAGAGAGATTCTTCGTTCAAAGTCAATGCTAGCTAAAATTCAGCCAA
AATATGTCGATTGTCTTCAGATACATGATTTACTGGGTTTTAGAAGTAAAGCAGATGATTATGTTCATGAGAACTACT-A
TGTTAACTTACCTTGTACTCCCTTCGTAAACTAATATAAGAGCGTTTGAAACACTACTTTAGTGATCTAAACACTCTTAT
ATTAGTTTACAGAGGGAGTACAAATTATGTGTAGAATCTGATTCAAGACCCAGATCCAGCGGCAGGGTAGAGTATAGGGG
GAGTAATGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGGTGTAACCATATATTT
G-------------------------------CAGTTGCTACATCAGTATATGACATTGAACTGTCTGGGACTTCTCCAA
TTGCTTTTTGCATGACTTTCATAGTTAATAAATCTATTTTAAATGGTTGCAGATGTCTAATCTCTCAGAGCCCTCAAAAG
AAGATGGTTCAGTCGAGAAAACTGGAGCTTGGAATAACACATGGAGCACTCTTATGCGCCACGCTTCAGTCTATGGTGTG
GCTGCTGGTTATTGCCTGTCAGCATCTCTGCTCTCCATTATCAACAAATGGGCAATCATGAAGTTTCCCTACCCTGGAGC
ACTGACAGCTTTACAGTACCTCACTAGTGTTGCTGGAGTTCTCCTGTGTGGACAGCTAAAGCTTATTGAGCCTGATAGGC
TGAATTTGAGGACCATGTGGAAGTTCTTACCTGCTGCTGTTATGTTCTACATCTCAATCTTCACAAACAGCGAGCTCCTG
ATGCATGCCAATGTGGACACTTTCATCGTGTTTCGGTCTGCTGTGCCGATATTTGTGGCCATTGGGGAGACACTTTACCT
TCACCAACCATGCCCATCATTCAAGACATGGCTCTCACTTTCCACTATACTTGGTGGAAGTGTGATATATGTTTTCACAG
ATAACCAGTTCACCCTGACTGCTTACAGCTGGGCAATAGCCTATCTAGCGAGCATGTCTATTGACTTCGTGTACATCAAA
CACGTCGTCATGACCATCGGGTTGAACACATGGGGCCTTGTGCTCTACAACAACCTTGAGGCTCTGCTCTTGTTCCCCCT
TGAGCTCCTTATAATGGGAGAGTTTAATCAGATGAAGGTGGACAGCTCCAAGATGACAACAAACTGGCTATCGTTCGACG
TGGTCCTTCCTGTTGCTCTGTCATGCCTGTTCGGGTTATCAATATCCTTCTTTGGATTCTCCTGCAGACGGGCCATCTCT
GCTACTGGATTTACGGTGCTCGGTATAGTGAACAAGCTCCTGACCGTCGTGATCAATCTGCTTATCTGGGACAAGCATGC
GTCCCTTGTGGGGACAATTGGGCTCTTGATATGCATGTCTGGTGGTGTTCTCTACCAGCAATCGACCACAAAGCCCAAGG
TGCCCAAGATCGAGCCAAAGGAAGAGGACGATGAAGAGGGGCAGAATTTGCTGCAGGTTCAGCCCGGGCATGAGAGCAAC
TCAAGTCAAAAGCATTCCTCCTGATAAGCTTACTTTACCTTCCCTCGACAACCCATTCGTGGTATATCTCAGATGAGGAA
TCTTGAACATGCTGTAGAACATCGGTGTTTCAAGAGAAACTAAATTTCATTCTACAATATCTTTGTTATATTATACTGTT
TTTCATTGGTTAGACAGGATTGTGGTGGTGGTGGTGTAGGGTACCAGACACCTCAACATACCAGGGTCGAATCCCCTGTA
TACTGAACCATGTATTCTATTTACCAAATTCCAGAAATACAATGGATGTACTTATTCGCTTCGCGGCATAAGTTTTTTCT
TTTCCTTTGTGGGTGAAGGAAATTTTGTCTGAC-------ATCATCAGTACTAGTCATGGTTCATGAATAGGTAGACATA
CTCTGACGCCTTATGCAAGTCTGAAACTTTTGATTTTGTTAGTCTTGTTGGTTAGCCAGTTATATTGTACCTCCTCCGTT
TGGGTGTAAAAGGTCTGCACATATTAGTTATAAGTATATAGTAGTACTGTAGTAACTAATATTTTGTTGATCAGTTGTTT
TTTCTAGAAAACGCACAGGCTATGTGTGTCATTTGTACCAAGACAGAATAGAGTATTTACAAGACAAATGGGATATAGGG
TGAATGAACGGCGAAAGCCCATAGGATTTTGACATAGTTCCTCGCAAATGTCGGCAAGAGCAGTGTCCGCCCTGGTTCTG
TAGATGGCAACCTGTCGGCTGCTAGCCACCTTGTCAAAAAGTTGCACATTTTGCTCGAGCCAAATGTTATACAGTACATA
GATAGAGGACTGCCATGAGGTTGAACTTGACCTGTCATCTCATTAACTGCTATCCCTGCTTAACATGTCGGAACCTAATC
AGTTTGAGAAGACTAAGAAGAGTCACTCCATCAAAAGGGTGGCCGCATGCATCGTCCAGATGCAGAGGCCGGGGGTTTAT
CCTCCTTTTCCAAAAAATTCAAAAGGGTGATAGATCGTTTCCGGTCGTTGACAACACAGTGGACAATGCGGTTGGCGCTG
CAGCCCTCCACATTGAAGCCTATTGCATGTCCAACATGGGTCACGAAGGGCAAGCC--------AGGCGAAAAGCTTCGC
TTGGAGATGGGCTCGCAAAGACAAAAGTCTAAACCGCTTGCGTGAG
>chr4B_1
CCCCCGCTCTTCGCTCGACCCCTCCACCCGCTCTCCCTCCTCGACCGCCGGCGGACCCGTCCAGGAGCGGAGCATGTGAC
TTCGACCACAAACGAAGGTGAGCCGCCTCCGGCGAGGTTCTCTTCCCATCCCCGTCCCCCTTCTGA-ATCTCAAACT---
-CGATCTTGCCTGGTGGTT-------ACAGTCGCGACGTGTTCCGCTTCGCCACGAAGCCGCTGAAAACTGTAGTGGATA
TTCCGTGGTCCTGACCGGCGGCTTGCCT----CCACCTAACGATCTCGAGTTCCTCCTCTCCGAATCATTTGATGCCATT
GCTGCCGT----CACATGTATGCATGTTTCAGCGACTAACTCCAGCGCTTCAATCATAATCATGGCGCGTCGCAGCAGTC
GGTTTAGCTGGCTCGATCGCGAGGCCCTCGTCAGCAGATAGCGAGC------GAACACCCCGTGTGCCTGCAGCCACTTT
TTTAACTTGCGTCTTGGAGGCATAGGGGCGGGGCTGTCACGTCGCGGTGGTTGAGGGGCATCTCTTCTTCCAGTTGAGTT
CGCCTCTCCCCACTGGCTGCGCGGGGTG-GGGGGAAGAAGCTTCCCTGTCTTCCTGAGGTAATGCGTCGCTATGCTAATT
TTGTTTCCTTGTGGGCAACTGGCTAGCACGTTGCATGATTGCGACCACGTCTTGATTGACTTGGCCAAACCGCTTAGGTG
TTGTGCTGAATATTCTTGCACAATTTTCTTACCCGTTCTCCGATCTGATGGCCACTGGCTGAGGCGCTTGTGACGTGCTC
CTACCATGTTTGACTCACATGCCGAACATGGCCGTCGTGGGCAAATGGATCGTTGTGTGTGGCCACCTTATATGAGAGCT
TATTAGCTGATTGGCCTTAGCTTAGCCTAGGTGG--TTGTTGCATACTGGTCTTCGTTCCTCCTTTGCCACCTTAAGCCC
TGACCCTCGGCTTTGTTTAAAAGGATACATGCTTCGTTGCTAGAGCGCTTGCTGTTGTTGGATTTGGGCTCGGGATCATG
GCTCCTGCTCGGGTTGGCCGGTTCCAGGTATTGCTTCTTCTTCGCTTGGTTTTTCTTCAGTTCTGATGAAATTGTTTCTT
GGTTGGCATGGTTGATATGCTACTAGATCTTTCATGAAGTGTTTCTTTCTTAGTGCTGCTATTGTTTCCTCTTCTTCCTT
TGACCCTTTTCTTGGAAGCTGAAACCTGTTA-TAGTACTTGTCTGTTTCCTTTTTTGGTTTC-GGCCTTGACCTGCTCGA
GTCTTTACCATGATTAACCTCAAAAGTTTGCTGAAGATCAAAGGAGAACATATGGAGGTGCACAGTCAGCACAATTAGAT
CAATTTCTAAGGAGTAGTTTTGTACTTTATAGCAATATATAAGAGGACGATTGTTTGCTAGAGACAATTATAGGAAGTGC
ACAATTAGAAAGTC-----GAGGTGTCCCGTCTGTAAAGTTTCTCCATATTTGTCAGGATCATTCAATCATCACTTTTTT
TCTTGGGTTCAGAAAATCAGCTTTGGTTGCTTGTACCT------TATGGATCATGCCTTTGAACTA--TTTTTTCTCTGA
AATATATGGCGTTCGCAAATAGGTGCATCCTCAAAGAGAGATTGTTCGTTCAAAGTCAATGCCACCTTAAATTCAGCAAA
AATATGTTGATTCTTTTCAGTTGCACGAGTTACTGGGTTTTAGAAGTAAAGCAGATAATTATGTTCATCAGAACTACTAA
TGTTCACTCACCTTGT----------------------------------------------------------------
-------------------ACAAATTATGTATGGAATCTGATTCAAGACCCAGATCCAGGGGCAGGATAGAGTATAGGTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTGTAACCATATCTCT
GCACAAAATATTTTAGTGCTTCTCTGCTCTGTCAGTTACTACATCTGTATATGACATTTAACTGTCTGGGGCTACTCCAC
TTGCTTTTTGCATGACTTTCATAGTTACTAAATTTATTTTAAATTGTTTCAGATGTCTAATCTCTCAGAGCCCTCAAAAG
AAGATGGTTCAATCGAGAAAACTGGAGCTTGGAATAACACATGGAGCACTCTTCTGCGCCATGCTTCGGTCTATGGTGTG
GCTGCTGGTTATTGTCTGTCAGCATCTCTGCTCTCCATTATCAACAAATGGGCAATCATGAAGTTTCCCTACCCTGGAGC
ACTGACAGCTTTACAGTACCTCACTAGTGTTGCTGGAGTTCTCCTGTGTGGACAGCTAAAGCTTATTGAGCCAGATAGGC
TGAATTTGAGGACCATGTGGAAGTTCCTACCTGCTGCTGTTATGTTCTACATCTCAATCTTCACAAACAGCGAGCTCCTG
ATGCATGCCAATGTGGACACTTTCATCGTGTTTCGGTCTGCTGTGCCGATATTTGTGGCCATTGGGGAGACACTTTACCT
CCACCAACCATGCCCATCATTCAAGACATGGCTCTCACTCTCCACTATACTTGGTGGAAGTGTGATATATGTTTTCACTG
ATAACCAGTTCACCCTGACTGCTTACAGCTGGGCGATAGCCTATCTAGCGAGCATGTCTATTGATTTCGTGTACATCAAG
CACGTTGTCATGACCATCGGGTTGAACACATGGGGTCTTGTGCTCTACAACAACCTTGAGGCTCTGCTGTTGTTTCCCCT
TGAGCTCCTTATAATGGGAGAGTTTAATCAGATGAAGGTGGACAGCTCCAAGATGACAACAAACTGGCTATCGTTCGACG
TGGTCCTTCCTGTTGCTCTGTCATGCCTGTTCGGGTTATCTATATCCTTCTTTGGATTTTCCTGCAGACGGGCCATCTCT
GCTACTGGATTTACGGTGCTCGGTATAGTGAACAAGCTCCTGACCGTCGTGATCAATCTGCTTATCTGGGACAAGCATGC
GTCCCTTGTGGGGACAATTGGGCTTTTGATATGCATGTCTGGTGGTGTTCTCTACCAGCAATCGGCCACAAAGCCCAAGG
TGCCCAAGATCGAGCCAAAGGAAGAGGACGATGAAGAGGGGCAGAATTTGCTGCAGATTCAGCCCGGGCATGAGAGCAAC
CCAAGTCAAAAGCATTCCTC---ATAAGCTTACTTTACCTTCCCTCGACAACCCATTCGTGGTATACCTCAGATGAGAAA
TCTTGAACATGCTGTAGAACATCGGCGTTTCAAGAGAAACTAAATTTCATTCTACAATACCTTTGTTATTGTATACTGTT
TTTCATTGGTTAGACAGGATTGTGGTGGTGG---TGTAGGGTACCAGACACCTCAACATACTAGGGTCGAATCCCCTGTA
TACTGAACCATGTATGCTATTTACCATATTCCAGAAATACAATGGATGTACTTATTCGCTTCGCGGCATAAGTTTTTTCT
TTTCCTTTGTGGGTGAAGGAAAAAATTTCTGACATCATCATTCATCAGTATTAGTCACGGTTCATGAATAGGTAGATGTA
CTCTGACGCCTTATGCAAGTCTGAAACTTTTGATTTTGTTAGTCTTGTTGGTTGGCCAGTTATATTGTACTTCCTCCGTT
TGGGTGTAAAAGGTCTG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GTTTTG
TAGATGGCAACCTGTCTGCTGCTAGCCACCTTGCCAAAAAGTTGCACATTTTGTTCGAGCCAAATGTCGG--AGTACATA
GATAGAGGACTGCCATGAGGTTGAACTTGACCTGTCATCTCATTAACTGCTGTCCCTGCT--ACATGTCGGAACCTAATC
AGTTTGAGAAGACTCAGAAGAGTCACTCCGTCAAAAGGGTGGC-------------------------------------
-------------------------------AGATCGTTTCCGGTTGTT------------GACAATGCGGTTGGCGCTG
CAGCCATCCACATTGAAGCATATTGCATGTCCAACATGGGTTGCAAAGGGCAAGCTAGGGTGCTAGGCGAAAAGTTTCGC
TTGGAGATGGGCTCGCAAAGACAAAAGTGTAAACCGCTTGGGTGAG
>chr1B_1942
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-----------------AAAACTGGAGCCTGGAGTAGCATATTGAGCACTCTTGTCCAGCAAGCTTCAGTGTATGGCTTG
GCTGCTGGTTATTGCCTGTCAGCATCTTTGCTCTCCATTATCAACAAATGGGCAATCATGAAGTTTCCGTACCCTGGGGC
ACTGACAGCTCTACAGTACTTGACCAGTGTTGTTGGAGTTCTCCTATGTGGACAAGCAAAGCTTATTGAGCATGATGGCC
TTAATTTCGCAACCATGTGGAAGTTCTTACCTGCTGCTGTGATGTTCTACATCTCCATCTTCACAAACAGCGAACTCTTG
CTGCATGCCAATGTGGACACTTTCATTGTGTTTCGCTCTGCTGTGCCAATATTTGTGGCCATCGGAGAGACGTTGTACCT
TCACCAACCATGGCCATCATTCAAGACATGGCTTTCACTATCCACCATACTTGGTGGAAGTGTGATCTACGTTTTCACAG
ACAACCAGTTCACTGTGACTGCTTATAGCTGGGCAGTGGCCTACCTAGCGAGTATGTCCATTGATTTCGTATACATCAAG
CACGTTGTCATGACCATTGGCCTGAATACATGGGGCCTTGTGCTTTACAACAATCTTGAGGCCTTGATGCTGTTCCCCAT
TGAGCTCCTTGTAATGGGAGAGTTCAGTCAGATGAAGGTCGACAGCTCTAACATGACAA---ACTGGCTGTCATTCGACG
TGATTCTTCCGGTTGCTTTGTCGTGCCTTTTTGGGTTAGCAATATCCTTCTTTGGGTTCTCCTGCAGACGGGCTATCTCA
GCTACTGGATTTACGGTCCTTGGTATAGTAAACAAGCTCCTCACTGTCGTGATTAATCTGCTTATCTGGGACAAGCATTC
ATCCCTTGTGGGAACAATTGGGCTGTTGATCTGCATGTCTGGTGGTGTTCTGTACCAGCAATCCACCACAAAGCCTAAGG
CACCAAATGTTGAGCCGAAGGAAGAGAATGATGAGGAGGAACAGAAGTTGCTTGAGATGCAGCATGGGCGTGACATCACT
TCAACTGAAGAGCATTCCTC---ATAAGC---------------------------------------------------
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>chr1D_1942
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-----------------AAAACTGGAGCCTGGAGTAGCATATTGAGCACTCTTGTCCAGCAAGCTTCAGTGTATGGCTTG
GCTGCTGGTTATTGCCTGTCAGCATCTTTGCTCTCCATTATCAACAAATGGGCAATCATGAAATTTCCGTACCCTGGGGC
ACTGACAGCTCTACAGTACTTGACCAGTGTTGTTGGAGTTCTCCTATGTGGACAAGCAAAGCTTATTGAGCATGATGGCC
TTAATTTCGCAACCATGTGGAAGTTCTTACCTGCTGCTGTGATGTTCTACATCTCCATCTTCACAAACAGCGAACTCTTG
CTGCATGCCAATGTGGACACTTTCATTGTGTTTCGCTCTGCTGTGCCAATATTTGTGGCCATCGGAGAGACGTTGTACCT
TCACCAACCATGGCCGTCATTCAAGACATGGCTTTCACTATCCACCATACTTGGTGGAAGTGTGATCTACGTTTTCACAG
ACAACCAGTTCACTATGACTGCTTATAGCTGGGCAGTGGCCTACCTAGCGAGTATGTCCATTGATTTCGTATACATCAAG
CACGTTGTCATGACCATTGGCCTGAATACATGGGGCCTTGTGCTTTACAACAATCTTGAGGCCTTGATGCTGTTCCCCAT
TGAGCTCCTTGTAATGGGAGAGTTCAGTCAGATGAAGGTCGACAGCTCTAAGATGACAA---ACTGGCGGACATTCGACG
TGATTCTTCCGGTTGCTTTGTCGTGCCTTTTTGGGTTAGCAATATCCTTCTTTGGGTTCTCCTGCAGACGGGCTATCTCA
GCTACTGGATTTACGGTCCTTGGTATAGTAAACAAGCTCCTCACTGTCGTGATTAATCTGCTTATCTGGGACAAGCATTC
ATCCCTTGTGGGAACAATTGGGCTGTTGATCTGCATGTCTGGTGGTGTTCTGTACCAGCAATCCACCACAAAGCCCAATG
CACCAAATGTTGAGCCGAAGGAAGAGAATGATGAGGAGGAACAGAAGTTGCTTGAGATGCAGCATGGGCGTGACATCAGT
TCAACTGAAGAGCATTCCTC---ATAAGC---------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>chr1A_1942
--------------------------------------------------------------------------------
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-----------------AAAACTGGAGCCTGGAGTAGCATATTGAGCACTCTTGTCCAGCAAGCTTCAGTGTATGGCTTG
GCTGCTGGCTATTGCCTGTCAGCATCTTTGCTCTCCATTATCAACAAATGGGCAATCATGAAATTTCCGTACCCTGGGGC
ACTGACAGCTCTACAGTACTTGACCAGTGTTGTTGGAGTTCTCCTATGTGGACAAGCAAAGCTTATTGAGCATGATGGCC
TTAATTTCGCAACCATGTGGAAGTTCTTACCTGCTGCTGTGATGTTCTACATCTCCATCTTCACAAACAGCGAACTCTTG
CTGCATGCCAATGTGGACACTTTCATTGTGTTTCGCTCTGCTGTGCCAATATTTGTGGCCATCGGAGAGACGTTGTACCT
TCACCAACCATGGCCGTCATTCAAGACATGGCTTTCACTATCCACCATACTTGGTGGAAGTGTGATCTACGTTTTCACAG
ACAACCAGTTCACTGTGACTGCTTATAGCTGGGCAGTGGCCTACCTAGCGAGTATGTCCATTGATTTCGTATACATCAAG
CACGTTGTCATGACCATTGGCCTGAATACATGGGGCCTTGTGCTTTACAACAATCTTGAGGCCTTGATGCTGTTCCCCAT
TGAGCTCCTTGTAATGGGAGAGTTCAGTCAGATGAAGGTCGACAGCTCTAAGATGACAA---ACTGGCTGCCATTCGACA
TGATTCTTCCGGTTGCTTTGTCGTGCCTTTTTGGGTTAGCAATATCCTTCTTTGGGTTCTCCTGCAGACGGGCTATCTCA
GCTACTGGATTTACGGTCCTTGGTATAGTAAACAAGCTCCTCACTGTCGTGATTAATCTGCTTATCTGGGACAAGCATTC
ATCCCTTGTGGGAACAATTGGGCTGTTGATCTGCATGTCTGGTGGTGTTCTGTACCAGCAATCCACCACAAAGCCCAAGG
CACCAAATGTTGAGCCGAAGGAAGAGAATGATGAGGAGGAACAGAAGTTGCTTGAGATGCAGCAAGGGCGTGACATCAGT
TCAACTGAAGAGCATTCCTC---ATAAGC---------------------------------------------------
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----------------------------------------------
>SNPs
--S-------------------------------------------------------------------S---------
------------------------------S----------SS-S---S-----------S----S-SSSS-SSSSSSSS
S----------SS------SSSSSSS-----S-------------------S-----------S----------------
--------------------------S-----------------------------------------------------
S-------SSSS--------------------------------------------------------------------
----------------------------------------------------------------S----S----------
--------------------------------------------------------------------------------
----------------------------S-------------S------------------S------------------
-----------S--------------------S-------------S---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-S------------------S----------------------------S----------------------S------
-S-----------------------------------------------------------------------------S
---------SSS-SSSSSS-------------------------------------------------------------
------------------------------------------------------------------S-------------
------------------------------------S-------------------------------------------
------------S--------S-------------------------------------S---------------S----
--------------------------------------------------------------------------------
------------------------------------S-SSSS--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------SS-SSS---S-------------------------S-------------S---------S------------
--------------------------S-----S------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
------------------------------------------S--------------S--SS------SS----------
-S----------------S----------------------------------S--------------------------
--------S--------------------S--------S-------------------S---------------------
-------------S-SSSS-------------------------------------------------------------
--------------------------------------S-----------------------------------------
S-----------S-------------------------------------------------------------------
----------------------------------S----------S----------------------------------
------------S------------------------------------------------------------S------
--------------------------------------------------------------------------------
------------------------------------S----------------------------S---------S----
-----------S--------------------------------------------------------------------
----------------S-----------------------------
>forward_173
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCAAACT
CCGATCTTGGCCC-------------------------------------------------------------------
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----------------------------------------------
>reverse_1702
--------------------------------------------------------------------------------
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---------------------CGCACGAGTTACTGGGTTTT---------------------------------------
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----------------------------------------------
>forward_182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GATCTTGGCCCGTGGTTACA----------------------------------------------------------
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----------------------------------------------
>reverse_2228
--------------------------------------------------------------------------------
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-------------------------------------------------------------------TGGGCTTCTCCAA
TTGCTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>forward_183
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ATCTTGGCCCGTGGTTACAG---------------------------------------------------------
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----------------------------------------------
>reverse_2490
--------------------------------------------------------------------------------
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---------CTTACAGTACCTCACTAGTGTTGCT----------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------
>forward_687
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ACGTTCCATGATTGCGACCT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------
>reverse_2947
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------TTGTTGTTCCCCCT
TGAGCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_1452
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------GGAAGTGG
ACGGGTACTTGC--------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------
>reverse_3682
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CTCCTTTGTGGGTGAAGCAA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
