>input_sequence_39861
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----------------------------------------------------------------------CCATATATAG
CATCGATCATGTGTCCCTGGAATAGAGCAAGTAACATCGCAGGCCACAGTTGTTTAAGCCACTCACTCTAGCTTGCATAT
CATAAGCTTAAACTAGCCGGTTCAACTCAACTGCATAATCTGCACAGACAGGAAG-------------CAGCAGGCT--G
CGAGAGTTGAAACGATCTTCTGTCTGTTGCCATGGCCTCCTTCAAGCTGACGAACCTGTGCTTCATAGTTGTCATGTTCT
CTGCTGTCTTCTCCTGTTGCAGAGGTAAAGTACAGCTCTGGTTTGCATCACTTGTTAAACTGCTAATCTTTTTATTACGG
AACACG---------------------CTAATCCGTTTTTCGCTTCGTCCCAACAATGCAGGGCAGGGAGGTGGTGGT--
----------GGTGCCGGAGCAGGAGCAGGAGGCGGAGCCGGAGGGGGGTCGGGCATCGGTGCAGTAGTACCAGGAACGC
AGGACTCGGTTCAGATCGTGGCGCAAGCTGCTCTCTGCTTTGACAACAGACCAGTAA-TAATCATCTCTCGTCTGCACTT
GTAGACTTGTAGTGGCATA----AGCAGCCAGCTAATGAATAGCAAACTTTGCGT----GGCAGGTGCTCACCGGGTGTC
TGCAGGCGATGGGCATCAACGC---CAGCGGCACCGGCGCGAGCATGCCGCCGCCTGCTCCGGGCGGCGCGGCGACGGCG
ATCATGTGCAGCCCGCCGTGCTTCGGACACGTGACCATGATGATGAGCTGCGTCAACGCCATCTTCGGCAACTTCGTGAC
CTACAACCCCGGCCTCATGCAGGGCGTCCAGGCCGTCTTCCAGATGTCCTGCGGCAACGTCAACGGCCCAGGAGGAGCCG
GAGGTGCTGCTGGTGGAATGGGAGGCAGGCCGGCTGGTAACGCTGGCGGTGGTGCCGGTGCCGGCGGAATGGGAGGCGGG
CCGGCTGGTAACGCTGGCGGCGGTGCCGGT---------------------------------GCCGGCAGTGCCAGTGG
TGGAGTTGGAGGCGGGGCTGCCGGTGGCATTCCTAACGGCATCGGCGGGCCCGGTGGCATTCCTAACAGTATCGGCGGTG
CCGCTGGCG------------CGGCCGGTGCCAGCGGGGGAGGTGCCGGTGGTACTACTAACATCATCGGCGGGGCCGCG
GGCGGAGGCGCCGGTGCCGGCGGAGCTAGCGGCGGGGCTGGAGGCGGCAACGGCACTACCAACGGCGGCGCTGCCACCGG
TGCCATTGGCAGCGGCAACATCACAAGCGTCTCACCCAATGCAGGTAAG-------------------------------
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--------GAGTAACACCAAATCCCTGAAGCAAAATTTCAATATTTCCTTGGAGATCGAGAGACCATTGGAACACTGCAA
CATGCCAAGAAATTTTCAGTGTGG---TAACATTTTTGCGTG----GACGTGCACTTGCAGGCTCGCACGTGGCGGTGAG
CAACCAAAGTCAGCCGACCAGCAGCGCGGGCGGGCCCGCTCTCGGCCTCAAGGGCGCCTGCTCCTCCTCCGTGCTGGTGA
TCTGGGCCGGCGCATGGCTGGTGCTGTTCTAGGTTTGACAGAAACGGCGACGGACACG--------------------TT
TCTTCTCCAGATGACATACTTAAAGTGTTGATTTTATCACCGTCAGTGAGCGAGGCTGGATGATCTTATATGTAACCGCA
ACGCGTGATTCCCTCGTCTTGATGAATGATGTGTTTCCACGCGTTGTTTTTAAGCCTCCTAATGTTGATGGCCTTCTGTT
CAAAAAAGAAAAAATGTTGATGGCCTGGTTGTGCTTGATCACTCCTATAAGTCGGATCAGTTTTGTCCAGAATGGTCCAA
CTGGGTGGCACCTCCATCGTAATATTTTCTTTATGATACTGG--------------------------------------
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--------------------------------TAAGATGCTCGTGCTACGC-------TCACAAATGATCGGTAGGACAT
TATCCTCCTACTTTAAGTGATAATCAAGAGATCGACGAACAGTAACAAAAGTAGACATTGAACAAAGCGACCTTATATTG
TTGACAGGTGCACAATCAAACATATAGTTATTTTTTTA------------------------------------------
--------------------------------------CGAAAGGCATATGCTCGACTTTATAGGA--------------
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>chr1D_1_TraesCS1D01G227400
AAACTTTGACGTAGGACAAAAGATAGAAGTACACTTATTTACGGACAGAAAGAGTAGGTGCCATCTGTGCGTATCTGCAC
TGGCAACACCACGAATAGAACTGGTGAAAACCTGTGAATCTTGGTAAGAACT-AAAACACGCCTGCCATTCCTCATTCAT
CAGAAGCATCAAGGTACAGAACTAGGTCTGGCATAGTCAACAGAACTAGGTCGGAACTACACCCCCGATGCCAGTTTAGG
TGTGATTTTATTTTTTTTAGAGAAGTTTAGGTGCGATTTATGCACACGTCCACAGTTAAACAAAGTCCAGGAGACAAGTG
AAGAGTAGTTGGTTCTTGTATACCATAGGCAATTAGTTTCCTTATCTTGTTTTTGCCAGCCGGTTGTGGCGCTATGGCTC
TATGTGAGCTTTTTGTTTACTGTCATTACGACTTTAAAACCGCTGTTGAACCTTTTTGATTCTCAATAAAGTTGGCCGTA
TGATGCAGAGGCCGGGGACTCCCCCCTTTTCGGAAAAAAAAATTAATAGATGAAGCAAATCTTTTGCCTCCGTTTCGAAA
AAAAAAAACAATACACAGGGATTACTCCCATCCATTTTTTACATCAATGTACTTCCCTCAGGTGACATGCCATGTGTGCG
CGCATATCCGCACTACCTACACCACGAACAGAACCGGCGAAAACTTGTGAACCTTGGTAAGAAGACGCTTGCATGCCATC
ACCCTTCGTTCATCGGAAGCCCTGAACTGAAGCATCAAGGTACAGAACTAGGTCTAGCATAGTCAACACAACTAGGTCGG
AACTACACCCCGATGCCAGTTTAGGTGTGATTTTAA----------------------------TTTTTTGAGAGAAGTT
TAGGTGTGATTTACGCACACGTCTGCAGGCAAA-AAAGTCCAGGAGACAAGTGAAGAGTAGTTGGTTCTTGTATACCAAA
CACAGGCACCTGACTGGCACAGACCATCATTTTTATATTGCACTGGGTCATGCAGTCGCAGCTCACAGGGCCATATATAG
CATCGATCATGTGTCCCTGGAATAGAGCAAGTAACATCGCAGGCCACAGTTGTTTAAGCCACTCACTCTAGCTTGCATAT
CATAAGCTTAAACTAGCCGGTTCAACTCAACTGCATAATCTGCACAGACAGGAAG-------------CAGCAGGCT--G
CGAGAGTTGAAACGATCTTCTGTCTGTTGCCATGGCCTCCTTCAAGCTGACGAACCTGTGCTTCATAGTTGTCATGTTCT
CTGCTGTCTTCTCCTGTTGCAGAGGTAAAGTACAGCTCTGGTTTGCATCACTTGTTAAACTGCTAATCTTTTTATTACGG
AACACG---------------------CTAATCCGTTTTTCGCTTCGTCCCAACAATGCAGGGCAGGGAGGTGGTGGT--
----------GGTGCCGGAGCAGGAGCAGGAGGCGGAGCCGGAGGGGGGTCGGGCATCGGTGCAGTAGTACCAGGAACGC
AGGACTCGGTTCAGATCGTGGCGCAAGCTGCTCTCTGCTTTGACAACAGACCAGTAA-TAATCATCTCTCGTCTGCACTT
GTAGACTTGTAGTGGCATA----AGCAGCCAGCTAATGAATAGCAAACTTTGCGT----GGCAGGTGCTCACCGGGTGTC
TGCAGGCGATGGGCATCAACGC---CAGCGGCACCGGCGCGAGCATGCCGCCGCCTGCTCCGGGCGGCGCGGCGACGGCG
ATCATGTGCAGCCCGCCGTGCTTCGGACACGTGACCATGATGATGAGCTGCGTCAACGCCATCTTCGGCAACTTCGTGAC
CTACAACCCCGGCCTCATGCAGGGCGTCCAGGCCGTCTTCCAGATGTCCTGCGGCAACGTCAACGGCCCAGGAGGAGCCG
GAGGTGCTGCTGGTGGAATGGGAGGCAGGCCGGCTGGTAACGCTGGCGGTGGTGCCGGTGCCGGCGGAATGGGAGGCGGG
CCGGCTGGTAACGCTGGCGGCGGTGCCGGT---------------------------------GCCGGCAGTGCCAGTGG
TGGAGTTGGAGGCGGGGCTGCCGGTGGCATTCCTAACGGCATCGGCGGGCCCGGTGGCATTCCTAACAGTATCGGCGGTG
CCGCTGGCG------------CGGCCGGTGCCAGCGGGGGAGGTGCCGGTGGTACTACTAACATCATCGGCGGGGCCGCG
GGCGGAGGCGCCGGTGCCGGCGGAGCTAGCGGCGGGGCTGGAGGCGGCAACGGCACTACCAACGGCGGCGCTGCCACCGG
TGCCATTGGCAGCGGCAACATCACAAGCGTCTCACCCAATGCAGGTAAG-------------------------------
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--------GAGTAACACCAAATCCCTGAAGCAAAATTTCAATATTTCCTTGGAGATCGAGAGACCATTGGAACACTGCAA
CATGCCAAGAAATTTTCAGTGTGG---TAACATTTTTGCGTG----GACGTGCACTTGCAGGCTCGCACGTGGCGGTGAG
CAACCAAAGTCAGCCGACCAGCAGCGCGGGCGGGCCCGCTCTCGGCCTCAAGGGCGCCTGCTCCTCCTCCGTGCTGGTGA
TCTGGGCCGGCGCATGGCTGGTGCTGTTCTAGGTTTGACAGAAACGGCGACGGACACG--------------------TT
TCTTCTCCAGATGACATACTTAAAGTGTTGATTTTATCACCGTCAGTGAGCGAGGCTGGATGATCTTATATGTAACCGCA
ACGCGTGATTCCCTCGTCTTGATGAATGATGTGTTTCCACGCGTTGTTTTTAAGCCTCCTAATGTTGATGGCCTTCTGTT
CAAAAAAGAAAAAATGTTGATGGCCTGGTTGTGCTTGATCACTCCTATAAGTCGGATCAGTTTTGTCCAGAATGGTCCAA
CTGGGTGGCACCTCCATCGTAATATTTTCTTTATGATACTGG--------------------------------------
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--------------------------------TAAGATGCTCGTGCTACGC-------TCACAAATGATCGGTAGGACAT
TATCCTCCTACTTTAAGTGATAATCAAGAGATCGACGAACAGTAACAAAAGTAGACATTGAACAAAGCGACCTTATATTG
TTGACAGGTGCACAATCAAACATATAGTTATTTTTTTACGAAAGGCATATGCTCGACTTTATAGGAATAAAGCCC---AA
CGGCACCAACCAGAGTTCAAACATATAGTTTTTTTTTACGAAAGGCATATGCTCGACTTTATAGGAATAAAGCCCAACGG
GCTGCCGCCTCCGCGCGTGGCGGCAGGCGCCACGTGTTGGCTGCCGCGCCTGCCGCCACGACCAAGCTGATCTGTTTTGT
CAATGTGACTCGAGGATTGTCTTTTTTGTCAATTACGTTTGGCAGGTGGTCTTTTTAGACAAAAAATCA-----------
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------------------------------------------------------------AATATTGAATCTAGTGGGCT
CAGCACACCGTCTATATGTGATTATACGATGCAAATAATGATTATAATACACTCAACTATAAATAACTATTGAACAAATA
CAATGTGGTGAAGTGCGCCAAGGAGGGGGGCATCTGCCCCCTGACCATGTTGATTTCTTGTTCTGCAAATCGTTTTTT-G
CATGTTATTTAAGTATGCGGATATATTGGGCCTTTATTTAAGATGGGCCCTAGGCCGCAACACCTTTTGTCATGGCCTAG
GCCTGATCGTGCATATATCATGACGCGGATCCCAACTTAATCTAGTCATGAGCGTCATACTCGAAGCGATGGCGTGCAGG
GCAGCACTTTGTGCAGCCGAAGACCTCCTGCTACATCAGTTCGTGGTAGCATCAGATGCAAAACAAATAGTTCGGGATAT
TATTCAAGGTTTTCATGGCAAACACGGAGCAATCATAAGCGAGATCAAAGCTTGCTCAACTGCATTTTCTTGTAGTTTTA
TTTTTGAAGGCCGGGATAGTAACATAGAAGCTCATAGTTTAGCTAGATTTGCTCTTAATTTATCCCTTGGGCGTCATGTG
TGATTTGGCCAACCACATGATGTAAACATTATCCCACTCTATGTGGACTATGAGGAATAAAATTAGGCCTTACCCCTAAA
AAAAATCTAGTCATGTGTGTAGCTTACATAGTACTTCATGTGTTCCATTTTATTAGACGTTTTACACATTCCAGACATGC
ACAAAACAGTTCAAACTAGAC
>chr1B_54
GTAGGGTGCCATCTGTGCA-----TAT-----------------------------------------------CTGCAC
TGCCCACACCACGAATAGAACTGGTGAAAACTTGTGAATCTTGGTAAGAACTGAAAACACGCTTCCCATTCCTCATCCAT
C-------------------------------------------------------------------------------
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--------------GGAAGCCCTGAACTGAAGCATCAAGGTACAGAACTAGGTCTGGCATAGTCAACAGAACTAGGTCGG
AACTACACCCCGACGCCAGTTTAGGTGTGATTTTAA----------------------------TTTTTTAAGAGAAGTT
TAGGTGTGATTTATGCAGACGTCCTCAGGTAAACAAAGTCCAGGAGACAAGTGAAGAGTAGTTGGTTCTTGTATACCAAA
CACTGGCACCTGACTGGCACAGACCATCATTTTCATATGGCACTGGGTCATGCAGTCACGGCTCACAGGGCCATATATAG
CATCGATCATGCATCCCTGAAATAGAGCAAGCAACATCCCAGGCCACAGTTGTTTAAGCCACTCACTCTAGCTTGCATAT
CATAAGCTTCAACTAGCCGGTTCAACTCAACTGCATAATCTGCACAGACAGGAAG-------------CAGCAGGCTCTG
CGAGAGTTGAAACGATCTTCTGTCTGTTGCCATGGCCTCCTTCAAGCTGACGAACCTGTGCTTCATAGTTGTCATGTTCT
TTGCTGTCTTCTCCTGTTGCAGAGGTAAAGTTCAGCTCTGGTTTGCATCACTTGTTAAACTGTTAATCTTTTCATTACAG
AAGACG---------------------CTAATCCGTTTTTCGTTTCGTCTCAACAATGCAGGGCAGGGAGGTGGTGGT--
----------G---------CTGGAGCAGGAGCGGGAGGCGGAGGGGGGTCGGGCATTGGTGCGATAGTACCAGGGACGC
AGGACTCGGTCCAGATTGTGGCGCAAGCTGCTCTCTGCTTTGACAACAGACCAGTAAATAATCATCTCTCGTCTGCGCTT
GTAGACTTGTAGTGGCATCGTTCAGCGGCCAGCTAATGAACAGCAAACTTTGCGT----GGCAGGTGCTCACCGGGTGCC
TGCAGGCGATGGGCATCAATGC---CAGCGGCACCGGCGCGAGCATGCCGCCGCCTGCCCCGGGCGGCGCGTCGACGGCG
ATCATGTGCAGCCCGCCGTGCTTCGGGCACGTGACCATGATGATGAGCTGCGTCAACGCCATCTTCGGCAACTTCGTCAG
CTACAACCCCGGCCTCATGCAGGGCGTCCAGGCCGTCTTCCAGATGTCCTGCGGCAACGTCAACGGCCCAGGAGGAGCCG
GAGCAGGAGCCGGCGGTGC---------------------------------------TGCCGGTGGAATGGGAGGCGGG
CCGGCTGGTAACGCTGGTGGTGGTGCTGGT---------------------------------GCCGGCAGTGCCAGTGG
TGGAGTTGGAGGCGGGGCTGCCGGTGGCATTCCTAACGGCATCGGCGGGCCCGGTGGCATTCCCAACAGTATGGGCGGTG
CCGCTGGCGGAGGCGGTGGCGCGGCCGGTGCTAGCGGTGGAGGTGCCAGTGGTACTACTAACAGCATCGGCGGGGCCATG
GGCGGAGGCGCCGGTGCCGGAGGAGCTAGCGGTGGGGCTGGAGGCGGCAACGACACTACCAACGGCGGCGCTGCCACCGG
TGCCATTGGCAGCGACAACATCACAAGCGTTTCACCCAATGCAGGTACTCCCTCCGTCCAAGTCCATAGGACATCTAAGA
GGGTGCTTAGATACAAGGGACTATTTTTAGTCTGACTAAAAATAGTCTCTTTTAGAGGCTAAAGTTCCAAGCACCCCTGA
CTAAAGAGAGGCTAGAACTAGTCTTGAAGCTAAAATCTTTTAGTCATGGGAAACCTACTAAAATATGTATTAGCTCTCTC
TCCTCATTTAATTCCTCTCCTTAGTTCTGGATTGGAGGGTTTGGAGGATAATAAATGCTCAACAACTAGATTTTAGTCTC
TTTAGTACTTGGATCCAAGCATGGGTGAGACTAGCAAGTTTTAGTCCCACTAATTTTAGTCATGGGACTAAAACGTATCC
AAGCATGCTCTAAGGAACTGCATCACAACCTAGGTGCATGGAGATTGGATAGAGGATGCTAAATCAAAAATCAATGGCAA
TAATTAATCTTCTTTCGCCTGCTTAAAAAATTGGGAAGAGCCAATCACTACATTGGTTTTTCCTTGTCATTAATTTTCTA
AGAGCAGCATGCAAATCCTATTTAATGCGTGAACCAATGAAAGTAGTAGCATGTAAAATGAAAATTAATGGTCGTGGGAA
TGAGGAGCTCCTTCCATACATGATGACTTATATATTTGGAATAATAAATTTTCATTAGACGCCCTATGCACCTGGACGGA
GGGAGTAAGAGTAATATCTAATTCCTGGAGCAAAAATTT-------------------------CAGTGTAACTTTGCAA
CAGGCGAAGAAATCTTCAGTGTTGTACTAACATTTTTGCGTG----GACGTGCACTTGCAGGCTCGCACGTGGCGGTGAG
CAACCAAAGTCAGCCGACCAGCAGCGCGGGCGGGCCCACTCTCAGTCTCAAGGGCGCCTG---CTCCTCCGTGCTGGCGA
TCTGGGCCGGCGCATGGCTGGTGCTGTTCTAGGTTTGACAGAAACGGCGACGGGCACG--------------------TT
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>chr1A_70
------TGCCATGTGTGCGTATCGTAT-----------------------------------------------CTGCAC
TGCCCACACCACGAACAGAACTGGTGAAAACTTGTGAATCTTGGTAAGAAGTAAAAACACGCTTACCATTCCTCATCCAT
C-------------------------------------------------------------------------------
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--------------GGAAGCCCTGAACTGAGGCATCAAGGTACAGAACTAGGTCTGGCATAGTCAACAGAACTAGGTCGG
AACTACACCCCGATGCCAGTTTAGGTGTGATCTTATTTTTCTGAGAGAAGTTTAGGTGTGATTTTTTTTTGAGAGAAGTT
TAGGTGTGATTTATGCAGACGTCCTCAGGCAACACAAGTCCATGGAACAAGTGAAGAGTAGCTGGTTCTTGTATACCAAA
CACCGGCACCTGACTGGCACAGACCATCATTTTTATATGGCACTGGGCCATGCAGTCGCAGCTCACAGGCCCATATATAG
CATCGATCATGGATCCCTGGAATAGAGCAAGTAACATCCCAGGCCACAGTTGTTTAAGC-----------------ATCT
CATAAGCTTAAACCA-------------------ATAATCTGCACAGATAGGAAGTGCAGGCTAGAAGCAACAGGCT--G
CGAGAGCTAAGAAGATCTCT----TGTTGCCATGGCTTCCTTCAAGCTGGTACACTTGTGCTTCACAGCCGTGCTGCTCT
GTGTTGCCTTCTCCTGTTGCAGAGGTAAGTAAAGTTGAGCTCTACTCTGGCTGCTTCACTTTGTCTGTTCATGACCCGTA
CCATGGTTTACTGTCAGAACCACGTTACTAATCTGGTTCTCCTCTGGTTTCAACAATGCAGGGCAGGGAGGAGGTGGCGG
CGGTGCCGGAG---------CAGGAGCAGGAGCAGGAGGCGGAGGGGGGTCGGGCATCGGCGCAGTAGTACCAGGGACGC
AGGACTCGGTCCAGATCGTGGCGCAAGCCGCTCTCTGCTTTGACAACAGACCAGTAA-TAATAGCCTCTCGTCTGCACTT
ACTCGTAGTCAGGGGCA----TCAGCGGCCGGCTAATGGGTAACAAATGTTGCGTGCATGGCAGGTGCTCACCGGGTGCC
TGCAGGCGATGGGCATCAACGCCAGCAGCGGCACCGGCGCGAGCATGCCGCCGCCTGCTCCGGGCGGCGCGGCGACGGCG
ATCATGTGCAGCCCGCCGTGCTTCGGGCACGTGACCATGATGATGAGCTGCGTCAACGCCATCTTCGGCAACTTCGTCAG
CTACAACCCCGGCCTCATGCAGGGCGTCCAGGCCGTCTTCCAGATGTCCTGCGGCAACGTCAACGGCCCAGGAGGAGCCG
GCGGTGCTCCCGGAGGT------------------------------------------------GGAATGGGAGGCGGG
CCGGCTGGTAACGCTGGCGGTGGTGCTGCCGGCGGTGGAATGGGAGGCGGGCCGGCTGGTAACGCTGGCGGTGCCAGTGG
GGGAGTTGGAGGCGGGGCTGCCG------------------------------GTGGCATTCCTAACAGCATGGGCGGTG
CCGCCGGCGGAGGCGGTGGCGCGTCCGGTGCCAGCGGTGGAGGTGCCAGTGGCACTACGAACACCATCGGCGGGGCCGCG
GGCGGA------GGTGCCGGCGGAACTAGCGGCGGGGCTGGAGGCGGCAACGACACTACCAACGGCGGCGCTGCCACCGG
TGCCATCGGCAGCGGCAACATCACAAGCGTTTCACCCAATGCAGGTA---------------------------------
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-------AGACCAACACCTAATCCCCGGAGCAAAATTTCAACATTTCCTTCGAGATCGAGAGACTATTGGAACGCTGCAA
CACGCGACGAAATATTCAGTGTAG---TAACATTTTTGCGTGAACGGACGTGCGCTTGCAGGCTCGCACGTGGCGGTGAG
CAACCAAAGCCAGCCGACCAGCGGCGCGGACGGGCCCACTCTCAGCCTCAAGGGCGGCTGCTCCTCCGCCGTGCTGGCGA
TCTGGGCCGGCGCATGGCTGGTGCTCTTCTAGGTCTGACAGCAACGGCGACGGGCACGCTGCAGCGGCTGTGATCTCGTT
TCTTCTCCGGATGACATACTAG-AGTGTTGATTTTATCACCGTCAGTGAGCAAGGCTGGATGATCTTATATGTAACCGCA
ACGCCTGATTCCCTCGTCTTGATGAATGATGTCTTTGCACGTGTTGTTTTC-AGCCTCCTTATGTTGATGGC-TTTTGTT
CAAAAAAAAAAAGATGTTATTGGCCTGGTTGTGCTTGATCACTCCTATAGCTCGGATCAGTTTTGTCCAGATGA-TCCAA
CTGGGTGGCACCTCCATCGTAATATTTTCTTCATGATACTCGTAAGAGCAACTCTAGCAGACTCTGCATCCTCCCGGCCC
GCAAAACGTGTTTGCAGTTCACGCAAAAACGCCTTTGTGGGCCGGCGCGGACGGGCCACAGTTGCAGAGCCTGCATAATG
GAAAGACATTACCAAATCTTTGCTAGAATAGCAAAACCAAAGAAAACAAGAACCACAAGTATGCATTTTAGAAGATTTCC
AATTTCCATAACTGCTCTCACAAGTTGGACTAATATTTTCTTCATGCATTCATTGTTGATCTGCGGATTCTTGATTTTGC
ATTCTTCTTTCTTCATCTTTGATTCGAAAGAAGTAGACGTTGCTTCCCCTCTAGTTGCACATGCAACCGCATCATTGCCT
TCGATTGTACTAAGAAGTGCACTAACATCTATTAAGTTTCTTTCTATCAACAAATCAATGTATTGGCCTTCCCAAAACCA
AAATAAGCATCCATCGTCCTACACAAAAGAATAAGCAAGCTCGAAGTGAGCTATCGCAATTGAACTAAACAATGAGCTAT
GAAATGAGCTACCGCAAGTGCACGTACCCCGTCGTTTTCGCATTTGAAGAACACCCATCCGAGGTGCTTCGGCATGCCCG
AAGTGAGCCGCAACACTTTCCGCGTGCAGTCGTCGCACTCTATGAGCGGCATCGGCAAGCCACAAAAATGTTGCGCGAGC
GTCGAGCCCGGTGGACGGTCAGACGAATCCTTGCCCGCAAACCTTCGACGGCAGCGAGCGGACGAACCGGTACCTGCATG
CGGCGATGCACCCTTGCCTGGGCTGCAGGAGAGGCTTCCCGACCACTCCATCGCTTGGGGCAGCAATCGGCGGCCGGAAA
AAGCCAAATCCGACGATCTGCGATGAAGTGCCGCATATCTGCAAATCCGGCGGCCGGCCGCGCAAGGGGGAAGGGAGGGG
AGGCCTCGTGCGCGTGGCGGCCTTCCGGCGTGCTCCTGCCGGCTGCTTTCGCCGAAATCTTGGGCGGCGGCCGGTAGTGG
CGCGAGGGGGGAGAGGAGAGGTGGTTGGTGGGGAAAGCGTGAGGTGAAATGCCCCCCACCAACCGCTTCCACTTATATGC
AGGGCAACGCAGCTGCGAGGGAGAGACCCGCGTTTTCCCGAGTTGGGGTCGGGATTTTGCCGCGCCCCCCAAAAAATTTT
ACGGGCCGGGGCGGGATGCGGGGTCTGATCGGGCAGATTTTTTTGCCCCGATCTGCATTTTAACGGTTATTTTACGAGTC
GAGGCAGGATGCGGGATCTGCTAAAGTTGCTCTACGATGCTTGTGCTATGCTACGGGATCACAAATGATCAGTGGGCATT
GCCA-TCCTACTTTAGGTGATAATCAGGAGATCGACGAACGGCAACAAAAGTAGACATTGATTGAAGCC-----------
---ACAGGTGCACAATCACAGATATCG---TTTTTTTATGAAAGGCATATGCCCAGATTTATATAGATATAAAGCCCAAA
CGGCACCAACCAGAGTTCAAACCAACAACACAAGGTCAAATCCCGGCCACTCGGCGAAACTGACATCATAACAGAGTTTA
AACCACACTGACGCAGTAGCAACAAACGAAGAGGCCCGCATGCCCCTGACTACGAGCAAGCAGAACCAAAACAACTTCCA
AGTCTAGGAGACCGAAGCGTGATCCGTGCGGGTGCGGCAAATGGAAATCGCCAACGCCCTAACACGAGTGATCCACAACT
ACGTGGCCTCCATGTCATGCTCCTTAATCAAAGATACGGCCACTCAGCCTCAGGTTTTTTTTATTAATTGAGCCATGAGG
AACTTACCAATGGTGCATGTACTGATCTCTCCGTTATTTTCGTTTTCTTTTTGGTTTCGGTGCCAGGTCTATGAGACTGG
TGGATGAGACCAAGAGCACGCCCAGGGCCAGGGTGGAGAACAACACATTCTGCCTATCCATGCACTTCCAATGCATAGAT
GAAAAGGCAATCAAAGAGTTCAGTGGCGGAGCCAGGAAAAATAGATTGAGGACGGCCAGAGTGTAGTGAATCCATGTTAG
GGAGGGCCAGCTAGTTAGAATGCACCACATGCATATTAGGCTTAACACAATAGTGTTAGGGGGGAGATGGCTCCCGTCCC
CCTATCTTCGCCACTGAGGGAGCTCACCAATCAAATTAAGCAGCAACGATCTAAGTCGAACAAGAAGGTTCTAAGTTAAT
GAAAGAGATTCTCATCGATCTCAACTGCTATGATCCCCTGTCCTCTGCAGAGATGGAGTCCATTGGCCGAGCAAGTCAAG
GAGGTGCTCCGGGACTACCTTGATCTCGAGCTCAACGAAGGCAGAAAGGTTGGTTTATTGGCCAACAGTGCATCGATCAT
GGAGTTAATTACTAGTGCTTAATAAATCATGTTATTTAACATTTGTTCATTCAGCCTGTGAATATTGAATCTAGTGGGCT
CAGTACACCATCTATATGTGATTATACGATGCAAATAATGCTTATAATACACCCAACTATAAATAACTACTGAATAAATA
CAATGTGGTGAAGTGCACCAAGGAGGGTGGCATCTGCACCCTGACCATGTTGATTTCTTGTTCTGCAAATCCTTTTTTTG
CATGTTATTTAAGTATGCGGATATATTGGGCCCTTATTTTT-ATGGGCCCTAGGCCGCAACACCTTTTGTCATGGCCTAG
GCCCGACCGTGCATATATCATGACGCGGACCCCTGCTTAATCTAGTCATGAGCGTCATACTTGAAGGGATGGCGTGCAGG
GAAGCACTTTGTGCAGCTGAAGACCTCCTGCTACATCAGTTCGTGGTAGCGTCAGATGCAAAACAAATAGTTCAGGATAT
TATTCAAGGTTCTCATGGCAAACACGGAGCAATCATAAGCGAGATCAAAGCTCGCTCTACTGCTTTTTCTTGTAGTTCTA
TTTTTGAAGGCCGGGATAGTAAGATAGAAGCTCATAGTTTAGCTAGATTTACTCTTAATTTATCCTTTGGGCGTTATGTG
TGGTTTGACCAACCACATGATGTAAACATTATCCCGCTCTCTGTAGATTATGAGGACTAAAATTAGGCCTTACCCCTAAA
AAAAATCTAGTCATGAGTGTAGCTTACATAGTACTTCATGTGT-------------------------------------
---------------------
>SNPs
SS-SSS--S-S-SS-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
--S-S--------------------------S------------------------------S-S-----------S---
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-----------------------------------------S------------S-----------
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-------------S---S-----SS-------------------------------------------------------
---S----------------------------------S-----------------------------------------
-----------SS-------------------------S-----------------------------------------
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S-------------------------------------------------------------S---------S-----S-
--S---------------------------------------S------S------------------------------
-----------SSSSSSSSS------------SS----S------------------------------------S----
----------S---------------------------------------------------------------------
------------------S-------S---------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------S--------------------------------------------------S-S
--------------------------------------------------------------------------------
----------S--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---------------
--------------------S-----S-----------------------------------------------------
------------------------------------------------------------------------S-------
-------------------------------------S---------S---------------S----------------
----------------------------------------------------S---------------------------
------------------------------S----------------SS-------------------------------
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------------------S--------S-------------S--------S----------------------S------
--S--S-------S--------S---------------------------------------------------------
-------------------------------------S-----S---------------------------------S--
-----------------------------------------------------S--------------------------
--------S-----------SSS----------------------------S----------------------------
----S---------------------------S---S----S--------SS--------S-----------S--S----
-------S----S-----SS-----------------------------SS--------------------SSSS-----
-------------------------------S--------S---------------------------------------
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----------------------------------S------S------S---------------------S--S--SSS-
SSSSS----------S----------S-------------S-S------------------SSS----SSSSSSSSSSSS
SSS---------------S-S----S-SSS--------S-------------S-SSS------SSS---S-SSS------
----------------------SS-S-SSSSSSSS-S-SSSSSS-SSS-SS-SSSSSSSSSS-SSSSSS--SSSSSSSSS
SSSSS-S-SSS---SSSS-SSSSS-SSSSSS-S-SSSSSSSSS--SS-S--S-SSS--S-SSS--S-SS-S-SSS--SSS
SSSSSS-SSSSSS-S-SS--SS-SSS--SSSS-SSS-SSSSSSSSSSSSS-SSSSSSSSS--S-SSSSS-----------
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---S-----S------------------------------S-----------S----------------S----S-----
----------------S----------S---------S---------------------------------S--------
--------------------------------S------SSS--------------------------------------
---S--S----------------------S---SS--------------------------S----S-------------
-S---------------S--------------------------------S----------------------S------
-----------S----------------------------------------S----S-----S-------------S--
----------------------S---------------------------S--------------S--------S-----
--S----S---------------------------S----S---S--S--------S-----------------------
---------------S---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_677
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-----------------TACACCACGAACAGAACCGG-------------------------------------------
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>reverse_3477
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------------------------------------CCACGCGTTGTTTTTAAGCC------------------------
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>forward_720
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------------------------------------------------------------GAAGACGCTTGCATGCCATC
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>reverse_3540
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-------------------ATGGCCTGGTTGTGCTTGAT-----------------------------------------
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>forward_732
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------------------------------------------------------------------------ATGCCATC
ACCCTTCGTTCA--------------------------------------------------------------------
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>reverse_3570
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-------------------------------------------------AGTCGGATCAGTTTTGTCCAGA---------
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>forward_733
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-------------------------------------------------------------------------TGCCATC
ACCCTTCGTTCAT-------------------------------------------------------------------
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>reverse_3571
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--------------------------------------------------GTCGGATCAGTTTTGTCCAGA---------
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>forward_3126
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------------------------------------------------------------------TTGGAACACTGCAA
CATGCC--------------------------------------------------------------------------
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>reverse_5256
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-------------------------------------------------------CCACGACCAAGCTGATCTGT-----
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--------------------------------------------------------------------------------
---------------------
