>input_sequence_39860
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---------------------------------------------------ATGAAGTACAGCAAGGAGGCCAAGCCCGA
GAGGGCGGGCGGCGGCGGCGCTGGGGCGAGGGCCGTGCCGGTGGCGCTCATGCTGCTCCTCCTCTGCGGCTTCTCCTTCT
ACCTCGGCGGCATCTACAGCACCGGCCGCACCTTCACCTTCTCCTCCACCACAACCAGCATCATCCCCATCGTCTCCACG
GCCAAGCAGGAGGGCTCTGCGATCGCCCTCGCCATTGCCAGGAACGGCAACGGCGACGACGAGGTGGAGTTCTCCGAGTG
CCCCGCTGACTACCAGGACTACACCCCCTGCACCGACCCCAAGCGGTGGAGGAGGTACGGCAACTACCGGCTCAGCTTCA
TGGAGCGGCACTGCCCGCCGCCGCCGGAGCGCGCCGTCTGCCTGGTGCCGCCGCCGCGGGGCTACAAGCCGCCCATCCGC
TGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAACGTGCCCTACGACTGGATCAACAGCCAGAAGTCCAACCAGCACTG
GCTCCGCAAGGACGGCGACCGCTTCACCTTCCCCGGCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCGTACGTCGACC
TCATGGCCGACCTGATCCCCGGCATGAAGGACGGCAGCGTCCGCACCGCGCTCGACACGGGGTGCGGCGTGGCCAGCTGG
GGCGGCGACCTGCTGGCCCGGAACATCCTGACCGTGTCGCTGGCGCCCAGGGACAACCACGAGGCGCAGGTGCAGTTCGC
GCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCATCTCCACGCAGCGCCTGCCCATCCCCTCGGCCTCCATGGACATGG
CGCACTGCTCCAGGTGCCTCATCCCGTGGACGGAGTTCGGCGGGCTCTACCTCATGGAGATCCAGCGGGTGCTCCGGCCG
GGCGGCTTCTGGGTGCTCTCCGGCCCGCCCATCAACTACGAGAACCGGTGGCACGGCTGGAACACCACGGTGGAGGCGCA
GAAGGCCGATTTCGACCGGCTCAAGAAGATGCTCGCCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCCG
TGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGACAAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTC
GACGCCGACGCGGCGTGGTACGTGCCCATGCGCTCCTGCGTGACCGCGCCCAGCCCCAAGTCCCGCGGCAAGGCGCTGCC
CAAGTGGCCCCAGAGGCTGGGCGTCGCGCCGGAGCGCGTCTCAGTCGTCCCCGGCGGCAGCGGCAGCACCATGAAGCACG
ACGACGGCAAGTGGAAGGCGGCGGTAAAGCACTACAAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTC
ATGGACATGAGCACCGTGTACGGAGGGTTCGCGGCGAGCCTCGTCAAGGACCCTGTGTGGGTCATGAACGTCGTCTCCTC
CTACGGGCCCAACTCCCTCGGCGTCGTCTACGACAGAGGACTCATCGGCACCAACCACGACTGGTACGCATTACCTCTTC
TTCCAACTGCATCCTGCTCGACTCTCTGT---------TCCACATTGCCAGAATGGAATTAACCTGCTGGTTCC---TAG
GTGCGAGGCCTTCTCCACGTACCCACGGACGTACGATCTGCTGCACGCCGACGGCCTCTTCGCCGCAGAATCACACAGGT
ATGTAATGTGCTGCT----------GCCCACATATTCAGC-AAGGAAGATCTC-AAGTTGCTAACCGATTGTCCCTGGCA
TTGCAGATGCGAGATGAAGTTTGTGCTTGTTGAGATGGACCGCATCCTTCGTCCGACCGGCTACGCCATCATCCGGGACA
ACCCCTACTTCCTCGACTCCGTGGCCTCCATCGCGAAGGGCATGAGATGGACCTGCGACAGGCATGACACCGAGAACAAG
GAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAAGCAGCTCTGGTCGGCAAAGAAGGCATAG-----------------
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-------------------------------------------------------------------------------
>chr1D_1_TraesCS1D01G202300
TCGCTCACTCCCTC---ACTCCACCGAGCTGACTGATTAAATGCGATCCGCCAAACCCATCT---TGTAATGCAACGCTA
ACAGCCGAGACAAAGC----CAACAATGTGATGTACGACCGGCCACGTCGAATTAAAGAATGAAATTC------------
------ACGCGCGTAGATGTGCAGCTACTACTACATTTTAGCCATACGTACGTC--------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CGTGCATGGGGCCGGGATCCACTCGT-
-TCGGTTGACGTTGAACACGCAAGGAAATCAGTCAATCTTTGCAATCAAGACGAAACAGTCGGTCTAAAC-AAGCATGTG
ACTTGTTTTCACCGGATGTACCTACATGACAGTAAATCATTTGTAATTC----------TGCTTGCTTTAGGTTGGCCGA
GTCGGGGCGTTTCCAATGAACCCATGATAATAATGCACTCAGTTGTTTTTGACGGAG-----GAAGACGACGATGGTGAT
GGGAGTGGGCGCGCGCCTAACCGTCGTCAATGGGGTCTTTAAAACTCCCCGAGTGTCCGGCC--TACACAAACAGAGGGC
GGCCAGGCCACCGCTAGAGATAC-TCCCATAATTGTCTGCCCAATCAACCTGCCAATTCTCGTTTGTTACGATCTGGTCG
TTTTGTTTAGGCGTGATAATCCTTCTGGTTTTATATTCATTCAGCTTCAGATCTAATCTAGTAATGGAGTAGTAGTAACG
TAAATCTCCTCGGCGCGCCGAGAGCCGATCAGCCGACACGCATCTGCCTTCCTTCCCCGCT---AGCTATATATCGACCG
ACCGATCGATCA----TCTTCAAGACCTCGCAACCTCTGCTCCCTGGTTCCGTC----TGGTTCCAAACTTCCAATTCAA
CCCAAAAGGTACGTCTTTTGGTTTCCTTGGTT--------------------------------GATAATTTCGTTGCGT
ATCTGGTCCGGAAATCGCGTGCGTATTCTCGTACGGGGTTTGTTACCGATTCTGATGCCCTGCCCTCAACAAACTTTAAA
AAATCTGACCCAATCCCATCCGCAGGGCAGGGCAGGGCAGAGGGCACGGCGATGAAGTACAGCAAGGAGGCCAAGCCCGA
GAGGGCGGGCGGCGGCGGCGCTGGGGCGAGGGCCGTGCCGGTGGCGCTCATGCTGCTCCTCCTCTGCGGCTTCTCCTTCT
ACCTCGGCGGCATCTACAGCACCGGCCGCACCTTCACCTTCTCCTCCACCACAACCAGCATCATCCCCATCGTCTCCACG
GCCAAGCAGGAGGGCTCTGCGATCGCCCTCGCCATTGCCAGGAACGGCAACGGCGACGACGAGGTGGAGTTCTCCGAGTG
CCCCGCTGACTACCAGGACTACACCCCCTGCACCGACCCCAAGCGGTGGAGGAGGTACGGCAACTACCGGCTCAGCTTCA
TGGAGCGGCACTGCCCGCCGCCGCCGGAGCGCGCCGTCTGCCTGGTGCCGCCGCCGCGGGGCTACAAGCCGCCCATCCGC
TGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAACGTGCCCTACGACTGGATCAACAGCCAGAAGTCCAACCAGCACTG
GCTCCGCAAGGACGGCGACCGCTTCACCTTCCCCGGCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCGTACGTCGACC
TCATGGCCGACCTGATCCCCGGCATGAAGGACGGCAGCGTCCGCACCGCGCTCGACACGGGGTGCGGCGTGGCCAGCTGG
GGCGGCGACCTGCTGGCCCGGAACATCCTGACCGTGTCGCTGGCGCCCAGGGACAACCACGAGGCGCAGGTGCAGTTCGC
GCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCATCTCCACGCAGCGCCTGCCCATCCCCTCGGCCTCCATGGACATGG
CGCACTGCTCCAGGTGCCTCATCCCGTGGACGGAGTTCGGCGGGCTCTACCTCATGGAGATCCAGCGGGTGCTCCGGCCG
GGCGGCTTCTGGGTGCTCTCCGGCCCGCCCATCAACTACGAGAACCGGTGGCACGGCTGGAACACCACGGTGGAGGCGCA
GAAGGCCGATTTCGACCGGCTCAAGAAGATGCTCGCCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCCG
TGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGACAAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTC
GACGCCGACGCGGCGTGGTACGTGCCCATGCGCTCCTGCGTGACCGCGCCCAGCCCCAAGTCCCGCGGCAAGGCGCTGCC
CAAGTGGCCCCAGAGGCTGGGCGTCGCGCCGGAGCGCGTCTCAGTCGTCCCCGGCGGCAGCGGCAGCACCATGAAGCACG
ACGACGGCAAGTGGAAGGCGGCGGTAAAGCACTACAAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTC
ATGGACATGAGCACCGTGTACGGAGGGTTCGCGGCGAGCCTCGTCAAGGACCCTGTGTGGGTCATGAACGTCGTCTCCTC
CTACGGGCCCAACTCCCTCGGCGTCGTCTACGACAGAGGACTCATCGGCACCAACCACGACTGGTACGCATTACCTCTTC
TTCCAACTGCATCCTGCTCGACTCTCTGT---------TCCACATTGCCAGAATGGAATTAACCTGCTGGTTCC---TAG
GTGCGAGGCCTTCTCCACGTACCCACGGACGTACGATCTGCTGCACGCCGACGGCCTCTTCGCCGCAGAATCACACAGGT
ATGTAATGTGCTGCT----------GCCCACATATTCAGC-AAGGAAGATCTC-AAGTTGCTAACCGATTGTCCCTGGCA
TTGCAGATGCGAGATGAAGTTTGTGCTTGTTGAGATGGACCGCATCCTTCGTCCGACCGGCTACGCCATCATCCGGGACA
ACCCCTACTTCCTCGACTCCGTGGCCTCCATCGCGAAGGGCATGAGATGGACCTGCGACAGGCATGACACCGAGAACAAG
GAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAAGCAGCTCTGGTCGGCAAAGAAGGCATAGTCACGAACCAGCAGCCC
CAGTGACAGGAATTGACCATGATCCCAGTGGAAAGGCGAGGGTGATTCATAGTCGACACTTTGATAGAACAAGGAGGGGT
TCATAGTCATCAAAATAAATTAAACAAGCA--ATATATATAGTTTATCTTGTCATATTC--ATATAGGAGGATCCAATAG
TTAGCTATTGATCACACAACAGTTGATTCTTTTTCTTTGGGGAAAGATAAGGGGAGGTAAAGTTTGATGAGTCACCTGTA
AGTTGTTATCCGAATACTGTATGCATGTC-TATAGCTAGTCGGCACTGCGATTGTAATCGAGCAATCAAGCGGGGTGGCT
ATAATTATTATTTATTCAAATATTTATGGAGCACGAAGTGATAGTGATGCAGTACTATTCCTTGCCCCAGAGCAGCGATG
AGTTAGTTGTGTGTTGCT----GTCAGCCTGGTGCGGTGCAGCCAATGTGTACCTCACC-----CCCAATCTCTTTGTTT
TCTAGTTACACCA----GTGTTTGTAACACTGACGCTGCAGCTTTGAACTAGTACTA-----------------------
--------------------------------CATGATACAAGACGCAGAAT----------------------------
-----------------------------CAAGAGATGCATTGCATAATTGACCAAAGGACTAATGAGTAGAGTAGAGTA
GAGTAGTGACCACTGACCACCATGACTACTGGAGAGTAGATGCATTGCATAACTGACCAAATGACTACTGAATAGAGTGG
TGGCCACCATGGGTG-----GAGTGGCTTG-CCTTCATTGCTTCCGCTCCCATTTACCTTCACGTCTACCGTCCCGCTCT
CTCCGCTCCATGACTTGCCTTGACGACTTGCTGCTGCCGCCAGCTCGTGTCCCATGCCTCGAGCCTGAACCCGGGCCGTC
CAACTCCGGATCTCCCATGCTGCTGGTATCGCCGCCGGAATCCCTGCTTCCCTCCGCGTTCTCCTCGTAGCCGCCATCGC
TGCCACGGTCACGAGATTGCAGTATCGTAGGGAACGACGATGGCCTTGATGCACCACCCATCACGACCGTTGGTTGACC
>chr1A_1
TCACTCACTCCCTCACTACTCCACCGAGCTGACTGATTAAATGCGATCAGCCAAACCCATCT---TGTAATGCAACGCTA
ACAGCCGAGACAAAGCTAGCCAACAGTATGATGTACGACCGGCCACATCGAATTAAAGAAAGAAACTC------------
------ACGCGCGTAGATGTGCAGCTCCAC------TTTAGCCATACTGCGC----------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GCGTGCATGGGGCCGGGATCCACTCGT-
-TCGGTTGACGTTGAACATGCAAGGAAATCAGCCAATCTTTGCAATCAGGACGAAACAGTCGGTCTAAAAAAAGCATGTG
ACTTGTTTTCACCGGATGTACCTACATGACAGTAAATCATTTATTTGTAAAACTATTGATGTTTGCTTTGGGTTGGCCGA
GTCGGGGCGTTTCCAATTAACCCATGATAATAATGCACTCGGTTGTTATTGAGGAGGAAGAAGAAGAGGACGATGGTGAT
GGGAGTGGGCGCGTGCCTAACCGTCGTCAATGGGGCCTTTAAAACTCCCCGAGTGTCCGGCGTATACACAAACAGAGGGC
GGCCAGGCCACTCCTAGAGACACCTCCCATAATTGCCTGCCCAATCAACCTGCCAATTCTCGTTTCT--TAATCTGGTCG
TTTTGTTTAGGAGTAATAATCCTTGTGGTTTTATATTCATTCAGCTTCAGATCTAATCCAGTAATGG---AGTAGTAACG
TAAATCTCCTTGGCGTGCCGAGAGCCGATCAGCCGACAGGCATCTGCCTTCCTTCCCCGCCAGCAGCTATATATCGACCG
ACCGATCGATCGATCGTCTTCAAGGCCTCGCAACCTCTGCTCCCCTGTCCCGTT----TGGCTCCAAACTTCCAATTCGA
CCCAAA-GGTACGTCTTTTTTGCGTTCCAAAAGTTCATCGTCGTCTCTGG--------------GATAATTTGGTTGCGT
ATCAGGTCCGGAAATCGCGTGCGTATTCTCGTACGGGGTTTGTTACCGATTCTGATGCGCTGCCCGCAACAAACTTTAAA
AAATCAGACCCAATCCGATCCGCAGG-----------------GCAGGGCGATGAAGTACAGCAAGGAGGCCAAGCCCGA
GAGGGCGGGCGGAGGCGGCGCCGGGGCGAGGGCCGTGCCGGTGGCGCTCATGCTGCTCCTCCTCTGCGGCTTCTCCTTCT
ACCTCGGCGGCATCTACAGCACCGGCCGCACCTTCACCTTCTCCTCCACCACCACCAGCATCATCCCCATCGTTTCCACC
ACGAAACAGGAGGGCTCCGCGGTCGCGCTCGCCATTGCCAGGAACGGCAACGGCGACGACGAGGTGGAGTTCTCCGAGTG
CCCCGCCGACTACCAGGACTACACCCCCTGCACCGACCCCAAGCGGTGGAGGAGGTACGGCAACTACCGGCTCAGCTTCA
TGGAGCGGCACTGCCCGCCGCCGCCGGAGCGCGCCGTCTGCCTGGTGCCGCCGCCGCGGGGCTACAAGCCGCCCATCCGC
TGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAACGTGCCCTACGACTGGATCAACAGCCAGAAGTCGAACCAGCACTG
GCTCCGCAAGGACGGCGACCGCTTCACCTTCCCCGGCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCGTACGTCGACC
TCATGGCCGACCTGGTCCCCGGCATGAAGGACGGCAGCGTGCGCACCGCGCTCGACACCGGCTGCGGCGTCGCCAGCTGG
GGCGGCGACCTGCTGGCCCGCAACATCCTCACCGTCTCCCTGGCGCCCAGGGACAACCACGAGGCGCAGGTGCAGTTCGC
GCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCATCTCCACGCAGCGCCTGCCCATCCCCTCGGCCTCCATGGACATGG
CGCACTGCTCCAGGTGCCTCATCCCGTGGACGGAGTTCGGCGGGCTCTACCTCATGGAGATCCAGCGGGTGCTCCGGCCG
GGCGGCTTCTGGGTGCTCTCCGGCCCGCCCATCAACTACGAGAACCGGTGGCACGGCTGGAACACCACGGTGGAGGCACA
GAAGGCCGACTTCGACAGGCTCAAGAAGATGCTCGCCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCCG
TGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGACAAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTG
GACGCCGACGCGGCGTGGTACGTGCCCATGCGCTCCTGCGTGACCGCGCCCAGCCCCAAGTCCCGCGGCAAGGCGCTGCC
CAAGTGGCCCCAGAGGCTGGGCGTCGCGCCGGAGCGCGTCTCCGTCGTCCCCGGCGGCAGCGGCAGCGCCATGAAGCACG
ACGACGGCAAGTGGAAGGCGGCCACGAAGCACTACAAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTC
ATGGACATGAGCACCGTCTACGGAGGGTTCGCGGCGAGCCTCGTCAAGGACCCCGTGTGGGTCATGAACGTCGTCTCCTC
CTACGGGCCCAACTCCCTCGGCGTCGTCTACGACAGAGGACTCATCGGCACCAACCACGACTGGTACGCATTACCTCTTC
TTCCAACTGCATCCTGCTCGCCGTCAGATTTTAGAACATCCCCGTTGCTAGAATTGAATTAACCTGCTGATTCTTATTAG
GTGCGAGGCCTTCTCCACGTACCCACGGACGTACGATCTGCTGCACGCCGACGGCCTCTTCACCGCAGAATCACACAGGT
ACGTAATGTGCTGCT----------GCCCACATATTCAGC-AAGGAAGATCTCAAAGTTGCTGACCGTTTGTATCTGGCA
TTGCAGATGCGAGATGAAGTTTGTGCTCGTTGAGATGGACCGCATCCTTCGTCCGACCGGCTACGCTATCATCCGGGACA
ACCCCTACTTCCTCGACTCCGTGGCCTCCATCGCCAAGGGGATGAGATGGACCTGCGACAGGCACGACACCGAGAACAAG
GAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAAGCAGCTCTGGTCGGCAAAGAAGGCATAGCTGCGAACCAGTAGCCG
CAGTGACAAGAATTGACCATGATCCCAGTGGAAAGGCGAGGGTGATTCATAGTCGACACTTTGATAGAACAAGGGGGATT
TCATAGTCATCAAAATAAATTACATGAGTAATATATATATAGTTTATATTATCATATTC--ATATAGGAGGATCCAATAG
TTAGCTATTGATCACACAACAGTTGATTCTTTTTCTTTGCGGAAAGATCAGGGGAGGTAAAGTTTGGTGAGTCACCTGTA
AGTTGTTATCCGAATACTGTATGCATGTCCCATAGCTAGTCGGTACTGTGATTGTAATCGAGCAATCAAGCGGGGTGGCT
ATAAATATTATTTATTCAAATATTTATGGAGAACCAAGTGATAGTGATGCAGTGTCATTCCTTGCCCCAGAGCAGCGATG
AGTTAGTTGTGTGTTGCTGTCGGTCAGCCTGGTGCGGTGCAGCCAATGTGTACCTCACC-----CC-AATCTCTTTGTTT
TCTAGTTATACAGCCGTGTGTTTGTAACACTGACACTGCAGCTTTGAAGTAGTACATGATACAAGATGGGGAAATATCTA
GTGCTACCGAGGCTCTGGTGCTACCATGAATCCATGATACAAGACGCAAAATTTGCAATGGGCACAGCACGCTCGATTTG
ATTA---CAGTAGAGGCCAGTTGCTGGGGCAAGAGATGCATTGCATAATTGACCAAAGGACTGCTGAGTAGAGT----TA
GAGTAGTGACCACTGACCA----------------------------------------AATGACTACTGAATAGAGTGG
TGGCCACCATGAGTGT---GGAGTGGCTTG-CCTTCATTGCTTCCGCTCCCATTTACCTTCCCGTCTACCATCTCGCTCT
CTCCGCTCCAGGACCTGCCTTGACGACTTGCTGCT---GCCAGCTCGTGTCCCGTGCCTCGAGCCCGACCCCGGCCCGTC
CAACTCCGGGTCTCCCATGCTGCTGGTATCGCCGCCGGAATCCCTGCTTCCCTCCGTGTTCTCCTCGTAGCCACCATCGC
TGCCACGGTCGCGAGATTGCAGTATCGTAGGGAACGACGATGGCCTTGATGCACCGCCCATCACGACCGGTGATTGACC
>chr1B_1
TCACTCACTCCCTCACTCCTCCACCGAGCTGACTGACTAAATGCGATCCGCCAAACCCATCTTGCTGTAATGCCACACTA
ACAGCCGAGACAAAGC----CAACAATGTGATGTATGACCGGCCACATCGAATTAAAGAAAGAAATTCCCTGCAGTGTAC
CTGTGTACGCGCGTAGATGTGCAGCTACAC------TCTAGCCATATACTCCCTCTGTTCCTAAATATAAGATATTTTAA
AGATTTCACTATGCATTACATACGGAGCAAAGCGAGTGAATCTACTAAAATACATATGTCTATATACATTCGTAGCGTAG
TCCATAATGAAATCTGGTTTTATATCTTGAAACGGAGGGAATACGTACCGCGGCGTGCATGGGCATCCACTATTCCACTA
GTCCGTTGACGTTGAACATACAGGGAAATGAGTCAATCTTCGCAATCAAGACGAAACAGTCGGTCTAAAT-AAGCATGTG
ACTTGTTTTCACTAGATGTACCTACATGACGGTAAATCATTTGCAATTATTGATGT-----TTTGCTTTGGGTTGGCCGA
GTCGGGGCGTTTCCAATTAACCCATGATAACAATGCACTCAGTTGTTATTGAGGGGG--GAAGAAGACGACGATGGTGAT
GGGAGTGGGCGCGTGCCTAACCGTCGTCAATGAGGTCTTTAAAACTCCCCGAGTGTCCGGCC--TACACAAACAGAGGGC
GGCCAGGCCACCGCTAGAGATAC-TCCCATAATTGCCTGCCCAATCAGCCTGCCAATTCTCGTTTGTTATAATCTGGTCG
TTTTGTTTAGGCGTGATAATCCTTCTATTTTTATATTCATTCAG------ATCTAACCTAGTAATGG---AGTAGTAACG
TAAATCTCCTTGGCGTGCCGAGAGCCGATCAGCCCACACGCATCTGCCTTCCTTCCCGGCTAGCAGCTATATATCGACCG
ACCAATCGATCGTG----TTCAAGACCTCGCAACCTCTGCTCCCTGGTTCCGTTCGTTTGGTTCCAAACTTCCAATTCAG
CCCAAA-GGTACGTCTTTTGTAGTAGTATAAGAGAGATTTCATCGTCAATCTTCAGGTATCCTCGATAATTTCGTTGCGT
ATCCGGTCCGGAAATCGCGTGCGTATTCTCGTACGGGGTTTGTTACCGATTCTGATGCCCTGCCCTCAACAAACTTTAAA
AAATCAGACCCAATCCCATCCGCAGG----------GCAGAGGGCAGGGCGATGAAGTACAGCAAGGAGGCCAAGCCCGA
GAGGGCGGGCGGCGGCGGCGGCGGCGCCAGGGCCGTGCCGGTGGCGCTCATGCTCCTCCTCCTCTGCGGCTTCTCCTTCT
ACCTCGGCGGCATGTACAGCACCGGCCGCACCTTCACCTTCTCCTCCACCACCACCAGCATCATCCCCATCGTCTCCACG
GCGAAGCAGGAGGGCTCCGCGATCGCGCTCGCCATTGCCAGGAACGGCAACGGCGACGACGAGGTCGAGTTTTCAGAGTG
CCCCGCTGATTACCAGGACTACACCCCCTGCACCGACCCCAAGCGCTGGAGGAGGTACGGGAACTACCGGCTCAGCTTCA
TGGAGCGGCACTGCCCGCCGCCGCCGGAGCGCGCCGTCTGCCTGGTGCCCCCGCCGCGGGGCTACAAGCCGCCCATCCGC
TGGCCCAAGAGCAAGGACCAGTGCTGGTACCGCAACGTGCCCTACGACTGGATCAACAGCCAGAAGTCCAACCAGCACTG
GCTCCGCAAGGACGGCGACCGCTTCACCTTCCCCGGCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCGTACGTCGACC
TCATGGCCGACCTGATCCCCGGCATGAAGGACGGCAGCGTGCGCACCGCGCTCGACACGGGCTGCGGCGTCGCCAGCTGG
GGCGGCGACCTGCTGGCCCGCAACATCCTGACCGTGTCGCTGGCGCCCAGGGACAACCACGAGGCCCAGGTGCAGTTCGC
GCTGGAGCGCGGCATCCCGGCCATCCTCGGCATCATCTCCACGCAGCGCCTGCCCATCCCCTCGGCCTCCATGGACATGG
CGCACTGCTCCAGGTGCCTCATCCCGTGGACGGAGTTCGGCGGGCTCTACCTGATGGAGATCCAGCGGGTGCTCCGGCCC
GGCGGCTTCTGGGTGCTCTCGGGCCCGCCCATCAACTACGAGAACCGGTGGCACGGCTGGAACACCACGGTGGAGGCGCA
GAAAGCCGACTTCGACCGGCTCAAGAAGATGCTCGCCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATCGCGG
TGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGACAAGCTGACGCCGGTGACCACCCCGGCCAAGTGCGACGACAGCGTC
GACGCCGACGCCGCGTGGTACGTGCCCATGCGCTCCTGCGTGACCGCGCCCAGCCCCAAGTCCCGCGGCAAGGCGCTGCC
CAAGTGGCCCCAGAGGCTGAGCGTCGCGCCGGAGCGCGTCTCCGTTGTCCCCGGCGGCAGCGGCAGCGCCATGAAGCACG
ACGACGGCAAGTGGAAGGCGGCCACGAAGCACTACAAGGCGCTGCTGCCCGCGCTGGGGAGCGACAAGGTGCGGAACGTC
ATGGACATGAGCGCCGTCTACGGAGGGTTCGCGGCGAGCCTCGTCAAGGACCCCGTGTGGGTCATGAACGTCGTCTCCTC
CTACGGGCCCAACTCCCTCGGCGTCGTCTACGACAGAGGACTCATCGGCACCAACCACGACTGGTACACATTACC---TC
TTCCAACTGCATCCTGCTCGGCACTCTGT---------TCCACATTGTCAGAATGGAATTAATCTGCTGATTCTTATTAG
GTGCGAGGCCTTCTCCACGTACCCACGGACGTACGATCTGCTGCACGCCGACGGCCTGTTCACCGCAGAATCACACAGGT
ATGTAATGTGCTGCAGAATCTTGCCGCCCACATATTCAGCCAAGGAAGATCTC-AAGTTGCTAACCGATTGTCCATGGCA
TTGCAGATGCGAGATGAAATTTGTGCTTGTTGAGATGGACCGCATCCTTCGTCCGACCGGCTACGCCATCATCCGGGACA
ACCCCTACTTCCTCGACTCCGTGGCCTCCATCGCCAAGGGGATGAGATGGACCTGCGACAGGCACGACACCGAGAACAAG
GAGAATGAGAAGGAGAAGCTCCTCATCTGCCACAAGCAGCTCTGGTCGGCAAAGAAGGCATAGCTGCGAACCAGCAGTCT
CAGTGACAGGAATTGACCATGATCCCAC-GGAAAGGCGAGGGCGATTCATAGTCGACACTTTGATAGAACAAGGGGGGGT
TCATAGTCATCAAAATAAACTACATGAGTAATATAAATATAGTTT----TATCATATTCATATATAGGAGGATCCAATAG
TTAGCTATTGATCACACAACAGTTGATTCTTTTTCTTTGCGGAAGAACCAGGGGAGGTAAAGTTTGGTGAGTCACCTGTA
AGTTGTTATCCGAATACTGTATGCATGTCCTATAGCTAGTCGGTACTGTGATTGTAATCGAGCAATCAAGCGGGGTGGCT
ATAAATATTATTTATTCAAATATTTATGGAGCACGAAGTGATAGTGATGCAGTGTCATTCCTTGCCCCAGAGCAGCGATG
AGTTGGTTGTGTGTTGCTGTCAGTCAGCCTGGTGCGGTGCAGCCAATGTGTACCTCACCACACCCC-AATCTCTTTGTTT
TCTAGTTATACCGCCTTGTCTTTGTAGCACTGACACTGCAGG--------------------------------------
--------------------------------------------CGCAGAATTTGCAATAGGCACATCACGCTCGATTTG
ATTACAACAGTAGAGGCCAGTTGCTGGAGCAAGAGATGCATTGCATAAT-------------------------------
-------------TGACCA----------------------------------------AATGGCTGCTGAATAGAGTGG
TGGCCACCATGGGTTGGGCGGAGTGGCTTTCCCTTCATTGCTTCCGCTCCCATTTACCTTCCCGTCTACCGTCTCGCTCT
CGCCGCTCCAGCACCTGCCTTGACGACTTGC---TGCCGCCAGCTCGTGTCCCGTGCCTCGAGCCCGACCCCGGCCCGTC
CAGCTCCGGGTCTCCCATGCTGCTGGTGTCGCCGCCGGAATCCCTGCTTCCCTCCGCGTTCTCCTCGTAGCCACCATCGC
TGCCACGGTCGCGAGATTGCAGTATCGTAGGGAACGACGATGGCCTTGATGCACCGCCCATCACGACCGGTGATTGACC
>SNPs
--S-----------------------------------------------------------------------------
----------------------------------------------S-------------S-------------------
----------------------------SSSSSSSS-----------SSS-SSS--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S--------------------------------------------------S----------
------------------------------------------------S------------S-------S----------
-----------------S-----------------------------S----S--S------------------------
-------------S------------------------------------------------------------------
-----------------------------------S---------------------------------SS---------
-------------------------------------------------------------------SSS----------
----------S----S----------------------------------------------------------------
-----------S-----------------------------------------S--------------------------
------S-------------SSS-SS-SSSSS------------------------------------------------
---S----------------------------------------------------------------------------
-----S--------------------SSSSSSSSSS----------S---------------------------------
---------------------S----------------------------------------------------------
----------------------------------------------------S---------------------------
--S--------------S--------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S--------------------S--------S---------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S------------------------S------------
----------------------SSSS------------------------------------------------------
-----------------S-----------------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------S-S----------------------------------------------S---S------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S-----S-----------------------S---------------
---------------------------------------------------------------SSS-------------S
--------------------------------------------------------------------------S-----
----------------------S-SS--S------------------S--S-----------------------------
---------------------------------------S--------S-----------------S-------------
-------------------------------------------S----S-------------------------------
----S------------------------------------------------SSS------------------------
------------------------------------------------------------------S-------------
--------S---S---------------------S-------------S------SS-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------SS----------SSSS--
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
-------------------------------------------------------------S-----------S------
----------S---S--------------------------------------S-----------S--S-----S-----
---------S--------------------------------------------------------------S-------
----------S--------------------------------------------S-------------S--S------
>forward_189
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---------CGCGTAGATGTGCAGCTACT---------------------------------------------------
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>reverse_1413
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----------------------------------------------------AACCAGCATCATCCCCATCG--------
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>forward_896
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----------------------------------------------------------------------------AACG
TAAATCTCCTCGGCGC----------------------------------------------------------------
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>reverse_2942
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GCCGCAGAATCACACAGGT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>forward_1413
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TCACCTTCTCCTCCACCACA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>reverse_3161
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CATGAGATGGACCTGCGACA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>forward_2823
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CAACTGCATCCTGCTCGACT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
>reverse_3655
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CTATTCCTTGCCCCAGAGCA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------
