>input_sequence_39839
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ATGCAGGCGTGCG
CGAGGGCGGCGGGGGAGAGGCTCCCTCTGGTTCGTGCCCCCGCCAGGCAACCGCTGGCTCAGAGGTAC-GTATCTCTCTT
CGTCTCTGCGGTTCCTGTCCGTTTGCT-CCCCTAATTGATGCCCCCGCTTGCCAAGAAATTTGCTAGGCAGCTTGTTGTT
CCCATGGTCCTGAGTTCGTGTTGCTACTTGCAGTTGTATCTCTGCAATCAAATAATTCATTTGAAT-TAACAGGATTACT
GGGACTTGCTATATAAGTTATCTGTTGTGTCTGCAAGTTCTTCTTGTAGCTTACTTGTGATA------------TATATT
GTCTGTTATTCACTGAAATCCCTTTTATTTAGCAAATGAGAAC---TATGTGTTAATTTGATTGAGCTGTTATGGAATCC
TCCTAAGGGCAACTACTTGCTCGTAATTGTCTTTTTTCCAGCGCATTGGCGACATAAATTGTCTGTTGCTATTTTCGTTT
GGCATTTG-CTGCTGCTCACTGAAGTTACTTTTTTGGAGCACATAAAAAATATTTGTTTTAATTTCATTGAGGTTTTGTG
AAATCCTCGTTCGGGTTAATACCACTAACACGCTTTTTTTCCAGCTTTGTTAAGGTCAGCAGACCATCTTCTCTGCATGA
GACAAATCCTGTAGTGTCCTGCTCAGCGAGGTTGTCGGAAAATATTTCACACAAAATAGAAGCCAGCACAGATCATATTC
TTCCAGCATCGCAAGATCATGTCGTTAAAGCAATCGACGCAATTAATGGGGGGCAAGTGATCGCGGTGCCCACCGATACA
ATATACGGGTTTGCTTGTGATGCATGGTTAGCGCTTTCTTAATTTCTCTTTTGTGCTAGAAGATTTAGTTTGTTTCTTTC
CTTCTTGTAAATGCCGTTTTCATGTTGATTCCAGATTAGCACTTGCTGCAGTGTTGCGGTGTGGTTGTATAGCACACAGA
ATCTGAAATTGCTTTCATGAA-TACTCCTGAATCAAGTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATGATGAATCTGTCCTGTG---CCCATATCTAAATT
AGGCATATGATGTAAACATCCAGATTAAATTTCAGAAACCTTCATTAGTTACTTCTGAACCTTGCTTTCACTCATAGTTA
AAAGTAGTCCATTGCATCCTTCTGAGCTAAGACTTTCATTTTGGAGTTTCTTTCACTGAATTTTAGTTGGTTGGATTCAT
CCATGATTCGCTCTAAAAAGGCTCTTCATGACAGTTCTGCAGAAGCAGTTAACCGGATATATGAAATCAAAGGACGCATA
CATACACGCCCTCTGGCCATCTGCGTTGCTGATGTCCCAGAAATATCACGGTTTGCCATAGTGGATCACTTGCCCCATGG
TTTGCTTCATAATCTCCTTCCTGGGCCTGTCACTGTTGTTTTAAAGCGAGGTGAGGATACTACACTACATTTCAGGTTTA
TCAAGCTTCTTTGTTAACCTGCATGAGGTGCTGAATATATTCTTTATTCGTTACATAGGTGAGAACAGTATACTGGAGAG
ATCACTTAATCCTGGTCTGGACAGCATTGGAGTACGTGTGCCAAAATTGGATTTCATACGATCCATTGCTCGTGGTGCTG
GAAGTGCACTTGCACTTACAAGCGCCAACTTAAGTGGTCGTCCTAGTAGCGTCAGTGTCAAAGATTTCGGGGATCTATGG
CCACACTGTTCATATGTCTTTGATGGTGGTATACTTCCTTCTGGACGTGCTGGTTCAACAATTGTTGACCTAATAACACC
AGGAGTCTACAAGATATTGAGAGATGGAAGGTAAGCGCAATAATTGTAATATCACTTATTATTATTTTGTGGGAAACATC
AATTATTATTAATAGCTCTCATCAATTTGGGATATGTACTGTACTAATCTTAATACAAT------AGTATTCAATTTGAC
TTGAATCTGTAACACGGGATACATTTGTGCAGTTCGAGGGAGGAAACAACGGCTGTGCTGGGAAAATTTGGCTTTGTTGA
AGCTTCATAG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>chr4B_1_TraesCS4B01G259200
TTGCTTCCACCCCAGTGGGTCTGAGTAGCAATCCAATATCCGAACACTGTTGGAACAATGCAAAAATTCTAAAACAGGGT
ATTGCACATTCATGTAAATTCTACCATCATGAGCATTTAAACTATGACCTGCATTGCGCCAACTTTGGCCTACATTAAGG
AGATGCTATGTGAGGTTCACAGTAGAACATTTTAACAGAAAATAATCTCTGATTTCACAGTCTAGCTCACACTTTAAAAT
GTCAACTCTACAAATTGTCTGTTATGCTAAAGCTCTGAATGCCTTTTCCAATTTAAATTACTCTGCTAAGTCTTACCATC
GACTCAGTGCATTTGAATCAAGGCCGTGCCGAAGCATGACATCCAGGTAAACTTCCGGGCTCCGATCAAACGCCACAACC
ACAAGTCCCCTGCACCACCACAATTTGCCAGCCAAACCAGCAACCCGCGTCATTATCCAGCCGAGGCCAAGCTAAAGCAG
CATACCACAGAGGATCCCAGCAGTACCTGGCCTGTGCCTTCCCCGCGGCCGCGTTGGAGGCGACGGCGGCGGCGACGTGG
AGCATGGCGCGCGCCGCGAGGGGGCAGCACTGGAGGGAGCCCTCCACGGCCAGCGCCGGCGCGTGCTCGCCGTCGAGGCG
GCCGTCCCGGAGGCACCTCACGGCCGCGTCCGCCATCTCAGCT---------------------CGCCGGCGGCGCCTCC
CGACTCAAAGCCTT-AAACCCTAGCGCGAGGGGATGGAGCTTTTGCACAAGGGCCCCTCCCTCCTCGCGCCTCTTCGCGG
AACAGCCCTCCCAGCTCGGGACCTCGCAGAGCTCCCGGAAGCAAGGAGCGGCACGGGCCCACCTGTCAGGCAGACTCGGA
GTG-CTTCCCCTGCCCATGTCGGATACGTTTGAGGTTTGACTCCTCCTCCTCCCTGTTCTA--AAAAGCTCAGGTTCTCC
TGTTCCTCTGCTCGTTTGCTGCGCGGCGGCGGCGGCGAGAGGAGGGAAGAAGAGG--AGCGGGCAAGATGCAGGCGTGCG
CGAGGGCGGCGGGGGAGAGGCTCCCTCTGGTTCGTGCCCCCGCCAGGCAACCGCTGGCTCAGAGGTAC-GTATCTCTCTT
CGTCTCTGCGGTTCCTGTCCGTTTGCT-CCCCTAATTGATGCCCCCGCTTGCCAAGAAATTTGCTAGGCAGCTTGTTGTT
CCCATGGTCCTGAGTTCGTGTTGCTACTTGCAGTTGTATCTCTGCAATCAAATAATTCATTTGAAT-TAACAGGATTACT
GGGACTTGCTATATAAGTTATCTGTTGTGTCTGCAAGTTCTTCTTGTAGCTTACTTGTGATA------------TATATT
GTCTGTTATTCACTGAAATCCCTTTTATTTAGCAAATGAGAAC---TATGTGTTAATTTGATTGAGCTGTTATGGAATCC
TCCTAAGGGCAACTACTTGCTCGTAATTGTCTTTTTTCCAGCGCATTGGCGACATAAATTGTCTGTTGCTATTTTCGTTT
GGCATTTG-CTGCTGCTCACTGAAGTTACTTTTTTGGAGCACATAAAAAATATTTGTTTTAATTTCATTGAGGTTTTGTG
AAATCCTCGTTCGGGTTAATACCACTAACACGCTTTTTTTCCAGCTTTGTTAAGGTCAGCAGACCATCTTCTCTGCATGA
GACAAATCCTGTAGTGTCCTGCTCAGCGAGGTTGTCGGAAAATATTTCACACAAAATAGAAGCCAGCACAGATCATATTC
TTCCAGCATCGCAAGATCATGTCGTTAAAGCAATCGACGCAATTAATGGGGGGCAAGTGATCGCGGTGCCCACCGATACA
ATATACGGGTTTGCTTGTGATGCATGGTTAGCGCTTTCTTAATTTCTCTTTTGTGCTAGAAGATTTAGTTTGTTTCTTTC
CTTCTTGTAAATGCCGTTTTCATGTTGATTCCAGATTAGCACTTGCTGCAGTGTTGCGGTGTGGTTGTATAGCACACAGA
ATCTGAAATTGCTTTCATGAA-TACTCCTGAATCAAGTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATGATGAATCTGTCCTGTG---CCCATATCTAAATT
AGGCATATGATGTAAACATCCAGATTAAATTTCAGAAACCTTCATTAGTTACTTCTGAACCTTGCTTTCACTCATAGTTA
AAAGTAGTCCATTGCATCCTTCTGAGCTAAGACTTTCATTTTGGAGTTTCTTTCACTGAATTTTAGTTGGTTGGATTCAT
CCATGATTCGCTCTAAAAAGGCTCTTCATGACAGTTCTGCAGAAGCAGTTAACCGGATATATGAAATCAAAGGACGCATA
CATACACGCCCTCTGGCCATCTGCGTTGCTGATGTCCCAGAAATATCACGGTTTGCCATAGTGGATCACTTGCCCCATGG
TTTGCTTCATAATCTCCTTCCTGGGCCTGTCACTGTTGTTTTAAAGCGAGGTGAGGATACTACACTACATTTCAGGTTTA
TCAAGCTTCTTTGTTAACCTGCATGAGGTGCTGAATATATTCTTTATTCGTTACATAGGTGAGAACAGTATACTGGAGAG
ATCACTTAATCCTGGTCTGGACAGCATTGGAGTACGTGTGCCAAAATTGGATTTCATACGATCCATTGCTCGTGGTGCTG
GAAGTGCACTTGCACTTACAAGCGCCAACTTAAGTGGTCGTCCTAGTAGCGTCAGTGTCAAAGATTTCGGGGATCTATGG
CCACACTGTTCATATGTCTTTGATGGTGGTATACTTCCTTCTGGACGTGCTGGTTCAACAATTGTTGACCTAATAACACC
AGGAGTCTACAAGATATTGAGAGATGGAAGGTAAGCGCAATAATTGTAATATCACTTATTATTATTTTGTGGGAAACATC
AATTATTATTAATAGCTCTCATCAATTTGGGATATGTACTGTACTAATCTTAATACAAT------AGTATTCAATTTGAC
TTGAATCTGTAACACGGGATACATTTGTGCAGTTCGAGGGAGGAAACAACGGCTGTGCTGGGAAAATTTGGCTTTGTTGA
AGCTTCATAGCAGCTGGCGCCTTCATACTAATTTCCTGTTTAATTAGGTTGTAGCAGACTATAT--GATGTTCTTTGTGA
TTT-ACTCTTGTGTCTCTATAACTTTTTGGTTGAAGCGTTAGTTTATTTTCCGTGCAACAATATCCACGACTGTGCCCTT
ACAGCCTTGCAATTTAATGTAACATTCATCTGGTACAGATCATTCAGATATAC-TAGTAGATTACAGTTGTATTCCTATG
GAAGCTACAGGAAAGTAATCTTAATTGAGAACTCGAGATGGATTCTGTGT----ACACGGTAAGGGACGTGTTAATTAAT
TTGTGTAACATATTGTGATGATGATGCGATGTCTTCAACAGTATAACAGCAGAGTTGATGTTATTTGTTTGGAATGCAAC
ATGGACTTGATTTGTTTTGCCTCGAATGAAATGATTCTACTCCCAACGTCCCATAATATAAGAACGTTTTTGACACTAGT
GAACGTTCTTATATTATGGGATGGAGGGAGTAGTTCTCAACTTTTTTTTAGATCCCTAGTTCTCAACTTTTGATGTGGTT
TAGCAGTACTTAAGAACTCGTGAAAGAAATCATGAACCTTTTTCCTTTGTCCGAATCTCACGTAAGTGGTCTAATCTCTC
ATCAATTCCTGTGTCTCCTAACCATGCGATGGATTTAAAGTCAAGAGGCGGAGGCCCCTGCCCAGTGCCCGCATGCTAAT
TACGTATATATTTTTTGGGAAAACATTCGATATATTCATTATCAATCGTAGTAACTCCGCAAAAGAAAAATCATCAATCA
TAATAGTACAACGAACATAAAAAATAATAAAAATTGCATGCTAATCATATTAACTACTACATTATTTGTTAATAGTTAAT
ACACATCCAAAAGCCCAGTACGTGCCTACCGAAAAAGGGTTTCCCCCGCTTTGTATTCCAAAGCAAACCACCAAAGTACA
CATGGCAATGCTGGGACGAGCAGCACAACAAGCCCAAAGAAAAAGAAGAAGAAAAAAT
>chr4D_1
TTGCTTCCACCCCAGTGGGTCTGAGTAGCAATCCAATATCCGAACACTGTTGGAACAATGCAAAAATTCTAAAACAGGGT
ATTGCACATTCATGTAAACTCTACCATCACGAACATTTAAACTATGACCTGCATTGCGCCAACTTTGGCCTACATTAAGG
AGATGCTATGTGAGGTTCACAGTAGAACATTTTAACAGAAAATAATCTCTGATTTCACAATCTAGCTCACACTTTAAAAT
GTCAACTCTACAAATTGTCTGTTATGCTAAAGCTCTGAATATGTTTTCCAATTTAAATTACTCTGCAAAGTCTTACCATC
GACTCAGTGCATTTGAATCAAGGCCGTGCCGAAGCATGATATCCAGGTAAACTTCCGGGCTCCGATCAAACGCCACAACC
ACAAGTCCCCTGCACCACCACAATTTGCCAGCCAAACCAGCAACCCGCGTCATTATCCAGCCGAGGCCAAGCTAAAGCAG
CATACCACAGAGGATCCCAGCAGTACCTGGCCTGCGCCTTCCCCGCGGCCGCGTTGGAGGCGACGGCGGCGGCGACGTGG
AGCATGGCGCGCGCCGCGAGGGGGCAGCATTGGAGGGAGCCCTCCACGGCCAGCGCCGGCGCGTGCTCGCCGTCGAGGCG
GCCGTCCCGGAGGCACCTCACCGCCGCGTCCGCCATCTCAGCTCCCCGTCGTAGTCGTCGTCGTCGCCGGCGGCGCCTCC
CGACTCAAAGCCTT-AAACCCTAGCGCGAGGGGATGGAGCTTTTGCACAAGGGCCCCTCCCTCCTAGCGCCTCTTCGCGG
AAC-GCCCTCCCAGCTC-GGACCTCGCAGAGCTCCCGGAAGCCAGGAGCGGCACGCGCCCACCTGTCAGGGAAACTCGGA
GTGCCTTCCCCTGCTCATGTCGGATACGTTTGA----------CTCCTCCCTTTGTTCTAAATAAAAGCTCAGGTTCTCC
TGTTCCTCTGCTCGTTTCCTGCGCGGCGGCGGCGGCGAGAGGAGGGAAGAAGAGG--AGCGGGGAAGATGCAGGCGTGCG
CTAGGGCGGCGGGGGAGAGGCTCCCGCTGGTTCGTGCCCCCGCCAGGCAACGGCTGGCTCAGAGGTAC-GTATCTCTCTT
CGTCTCTGCGATTCCTATCCGTTTGCTCCCCCTAATTGATGCCCCCGCTTGCCAAGAAATTTGCTAGGCAGCTTGTTGTT
CCTATGGTACTGAATTCATATTGCTACTTGCAGTTGTATCTCTGCAATCAAATAATTCATTTGAAT-TAACATGATTACT
GGGACTTGCTATATAAATTATCTGTTGTTTCTGCAAGCTCTTTTTTTAGCTTACTCGCGATATAC------TAGTATATT
ATCTGTTATTCACTGAAATCCCTTTTATTTAGCACATGAGAATTAGTATCTGTTAGTTTGATTAAGCTGTTATGGAATCC
TCATAAGGGCAAGTACTTGCTCGTAATTGTCTTTTTTC-AGCGCATTGGCGACATAAATTGTCTGTTGCTCTTTTTGTTT
GGCATTTGTCTGCTGCTTACTGAAGTTGCTTTTTTGGAGCACATGAAAA--ATGTGTGTTTATTTTATTGAGGTGTTGTG
AAATCCTCATTCGGGTTAATACCACTAACGCACTTTTTTTCCAGCTTTGTTAAGGTCAGCAGACTACCTTCTTTGCATGA
GACAAATCGTGTAGTCTCCTGCTCGGCGAGGGTGTCAGAAAATATTTCACACAAAATAGAAGCCAGCACGGATCATATTC
TTCCAGCATCGCAAGATCATGTCGTGAAAGCAATCGACGCAATTAATGGGGGGCAAGTGATTGCAGTGCCCACTGATACA
ATATACGGGTTTGCTTGTGATGCATGGTTAGTGTTTTCTTAATTTCTCTTTGC-GCTAAGAGATTTAGTTTTTTTT--GC
CTTCTTTTAAACGTCGTGTTCATATTGATTCCAGATTAGAACTTGCCGCAGTGGTGCAATGTGGTTGTATAGCACAGAAA
ATCCGAAATTGCTTTCAGTAATTACTCCTGAATCAAGTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATGATAAATCTGTAGTCTTGTACCCATATCTAAATT
ACGCATGTGATGCAAACATCCAGAATAAATTTCAGAAACCTTCATTAGTTACTTTTGAACCTTGCTTTCACCAAGACTTA
GACT---TCCATTGCATCCTTCTAAGCTAAGACTTCCATTTTGGAGTTTCTGTCACTGAATTTCAGTTGGTTGGGTTCAT
CCATGATTCA--CTCAAAATTCTCGTCATGACAGTTCTGCAGAAGCAGTCAATCGGATATATGAAATCAAAGGACGCATA
CATACACGCCCTTTGGCGATCTGCGTTGCTGATGTCCCAGAAATATCACGGTTTGCCGTAGTGGATCACTTGCCCCATGG
TTTGCTTCATAATCTTCTTCCTGGGCCTGTCACTGTTGTTTTAAAGCGAGGTGGGGATACTACACTACATTTCAGTTTTG
TCAAGCTTCTTTGTTAAACTGCATGAGGTGCTGAATATATTCTTTATTCATTACATAGGTGAGAACAGTATACTGGAGAG
ATCACTTAATCCTGGTCTGGACAGCATTGGAGTACGTGTGCCAAAATTGGATTTCATACGATCCATTGCTCGTGGTGCTG
GAAGTGCACTTGCGCTTACAAGCGCCAACTTAAGTGGTCGTCCTAGTAGCGTCAGTGTCAAAGATTTCGGGGATCTATGG
CCACACTGTTCATATGTCTTTGATGGTGGTATACTTCCTTCTGGACGTGCTGGTTCAACAATTGTTGACCTAATAACACC
AGGAGTCTACAAGATATTGAGAGATGGAAGGTAAGCTCAAGAATAGCAATATCA--------------------------
----ATTGTTAATAGCTCTTGTTAAATTATTCACATCCAATTGAGGATGGTATTGTCTTAAGTACAGTATCCAAATTGAC
ATGAATCGCTGACAC-GGATACAATTGTGCAGTTCGAGGGAGGAAACAATGGCTGTGCTGGGAAAATTTGGCTTTGTTGA
AGCTTCATAGCAGCTGGTGCCTTCACACTCATTTCCTGTTTAATTAGGTTGTAGCAGAGTATAT--GATGTTCTTTGTGA
TTTTACTCTTGCGTCACTGTAACTATTTGGTTGAAGCATTAGTTTTC-TTCCTTGTAACAATATCCACGACAATGCCCTT
ACAGACATGCAATCTACTGTAACCTTCAGTTGGTACAGTTCATTCAGATATACGTAGTAAATTACAGTGGCACTCGTATG
CAAGCTACAGGAAAGTGATCTTGATTGAGAACCTGAGATGGATTATGTGT----AGTG----AGGGACATGTTCACTAAT
TCGTGTAACATATTGTAATGATGCGATGTTTT----AACAATATAACAGCAGAGTTGATGTTATTTGTTTGGAACGCAAC
ATGGACTTCATTT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>chr4A_1
TTGCTTCCACCCCAGTGGGTCTGAGTAGCAATCCAATATCCGAACACTGTTGGAACAATGCAAAAATTCTAAAACAGGGT
ATTGCACATTCATGTAAATTCTACCATCATGAACATTTAAACTATGACCTGCATTGCGCCAACTTTGGCCTACATTAAGG
AGATGCTATGTGAGGTTCACAGTAGAACATTTTAACAGAAAATAATCTCTGATTTCACAGTCTAGCTCACACTTTAAAAT
GTCAACTCTACAAATTGTCTGTTATGCTAAAGCTCTGAATATCTTTTCCAATTTAAATTACTCTGCAAAGTCTTACCATC
GACTCAGTGCATTTGAATCAAGGCCGTGCCGAAGCATGATATCCAGGTAAACTTCCGGGCTACGATCAAACGCCACGACC
ACAAGTCCCCTGCACCACCACAATTTGCCAGCCAAACCAGCAACCCGCGTCATTATCCAGCCGAAGTCAAGCTAAAGCAG
CATACCACAGAGGATCCCAGCAGTACCTGGCCTGTGCCTTCCCCGCGGCCGCGTTGGAGGCGACGGCGGCGGCGACGTGG
AGCATGGCGCGCGCCGCGAGCGGGCAGCACTGGAGGGAGCCCTCCACGGCCAGCGCCGGCGCGTGCTCGCCGTCGAGGCG
GCCGTCCCGGAGGCACCTCACCGCCGCGTCCGCCATCTCAGCTCCCCGTCGTAGTCGTCGTCGTCGCCGGCGGCGCTTCC
CGACTCAAAACCTTAAAACCCTAGCGCGAGGGGATGGAGCTTTTGCAGAAGGGCCCCTCCCTCCTCGCGCCTCTTCGCGG
AACAGCCCTCT-AGCTC-GGACTTCGCAGAGCTCCCGGAAGCCAGGAGCGGTACGGGCCCGCCTGTCAGGGAGACTCGGA
GTGCCTTCCCTTTTCCATGTCGGATACGTTTGA----------CTACTCCTCCCTGTTCTT----AAGCCCAGCTTCTCC
TGTTCCTCTGCTCGTTTCCTGCGCGGCGGCGGCGGCGAGAGGAGGGAAGAAGAGGAGAGCGGGGAAGATGCAGGCGTGCG
CTAGGGCGGCGGGGGAGGGGCTCCCGCTGGTTCGTGCCCCCGCCAGGCAGCCGCTGGCTCAGAGGTACAGTATCTCTCTT
CGTCTCTGCGGTTCCTGTCCGTTTGCCCCCCCTAATTGATGCCCCCGCTTGCCAAGAAATTTGCTAGACAGCTTGTTGTT
CCCATGGTACTGAGTTCGTATTTCTACTTGCAGTTGTATCTCTGCAATCAAATAATTCATTTGAATTTAACATGATTGCT
GGGACTTGCTATATAAATTATCTGTTGT-TCTGCAAGCTATTTTTTTTAGCTTATTATATACTTGCGATAGTAGTATATT
GTCTGTTATTCACTGAAATCCCTTTTATTTAGCACA-------------CTGTTAATTTGATTGAGCTGTTATGGAATCC
TCATAAGGGCAAGTACTTGCTCATAATTGTCTTTTTTC-AGCGCATTGGCAACATAAATTGTCTGTTGCTATTTTCGTTT
GGCATTTG-CTGCTGCTTACTGAAGTTCCTTTTCTGGAGCACATGAAAAATATTTGTTTTAATTTCATTGAGGTTTTGTG
AAATCCTCATTCGGGTTAATAGCACTAACGCAC-TTTTTTCCAGCTTTGTTAAGGTCAGCAGACTACCTTCTTTGCATGA
GACAAATCGTGTAGTCTCCTGCTCGGCGAGGGTGTCAGAAAATATTTCACACAAAATAGAAGCCAGCATGGATCATATTC
TTCCAGCATCGCAAGATCATGTCGTGAAAGCAATTGAAGCAATTAATGGGGGACAAGTGATCGCGGTGCCCACCGATACA
ATATATGGGTTTGCTTGTGATGCATGGTTAGTGCTATCTTAATTTCTCTTTGC-GCTAAGAAATTTAGTTTTTTTTTTGC
CTTCTTTTAAACGTCGTTTTCATATTGATTCCAAATTATAACTTGCCGCAGTGGTGCAGTGTGGTTGTATAGCACAGAAA
ATCCGAAATTGCTTTCAGTAATTACTCCTGAATCAAGTTATGATAGAGAACTAAGCGATAGCTTAGTGGTAGGGGCACTG
TTCTGTGCTCCAAGCCAGCCAGGTTCGATCCCTGAGGGGAACGGATATCAACTGTGTTTCTCGTCTCCTCCTATAAAAAT
ATGCCGAGGGGCTCCTCCCCCTCTGGTCTCGTTTAAATCAAGTTATGATAAATCTGTAGTCTTGTACCCATATCTAAATT
ACGCATGTGATGCAAACATCCAGAATAAATTTCAGAAACCTTCATTAGTTACTTTTGAACCTTGCTTTCACCAAGACTTA
GACT---TCCATTGCATCCTTCTAAGCTAAGACTTCCATTTTGGAGTTTCTGTCACTGAATTTCAGTTGGTTGGGTTCAT
CCATGATTCACTCTAAAAATTCTCGTCATGACAGTTCTGCAGAAGCAGTCAATCGGATATATGAAATCAAAGGACGCATA
CATACACGCCCTTTGGCAATCTGCGTTGCTGATGTCCCAGAAATATCACGGTTTGCCGTAGTGGATCACTTGCCCCATGG
TTTGCTTCATAGTCTTCTTCCTGGGCCTGTCACTGTTGTTTTAAAGCGAGGTGGGGATACTACACTACATTTCAGTTTTC
TCAAGCTTCTTTGTTAAACTGCATGAGGTGCTGAATATATTCTTTATTCATTACATAGGTGAGAACAGTATACTGGAGAG
ATCTCTTAATCCTGGTCTGGACAGCATTGGAGTACGTGTGCCAAAATTGGATTTCATACGATCCATTGCTCGTGGTGCTG
GAAGTGCACTTGCGCTTACAAGCGCCAACTTAAGTGGTCGTCCTAGTAGCGTCAGTGTCAAAGATTTCGGGTATCTGTGG
CCACACTGTTCATATGTCTTTGATGGTGGTATACTTCCTTCTGGACGTGCTGGTTCAACAATTGTTGACCTAATAACACC
AGGAGTCTACAGGATATTGAGAGATGGAAGGTAAGCTCAAGAATAGCAACATCA--------------------------
----ATTGTTAATAGCTCTTGTTAAATTATTCACATCCAATTGAGGATGGTATTGTCTTAAGTACAGTATCCAAATTGAC
TTGAATCGCTGACAT-GGATACAATTGTGCAGTTCGAGGGAGGAAACAATGGCTGTGCTGGGAAAATTTGGCTTTGTTGA
AGCTTCATAGCAGCTGGTGCCTTCATACTCATTTCCTGTTTAATTAGGTTGTAGCAGAGTATATATGATGTTCTTTGTGA
TTTTACTCTTGTGTCACTGTAACTTTTTGGTTGAAGCATTGGTTTATTTTCCTTGTAACAATATCCACGACAATGCCCTT
ACAGACTTGCAATCTGCTGTAACCTTCAGTTGGTACAGTTCATTCAGATATACGTAGTAGATTACAGTGGCACTCGTATG
CAAGCTACAGGAAAGTGATCTTGATTGAGAACCTGAGATGGATTATGTGTAGACAGTG----AGGGACATGTTCACTAAT
TCGTGTAACATATTGTAATGATGCGATGTTTT----AACAATATAACAGCAGAGTTGATGTTATTTGTTTGGAACGCAAC
ATGTACTTCATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------SS------------------------S-------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S------------------------S---------------------------S---------
---------------------------------SSSSSSSSSS-------------------------------------
-----------------S---------------------------------------------S----------------
-S-----------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------S----------S----------------------------------------------------S-------
----------------S-----------S--------S----S--S----------------------------------
----------------------------------S-------S------S------------------------------
--S---------S-------------------------S-----------------------------------------
-----------------S---------S----------------S-----------------------------------
--------S--------------------S-S--------------------------------S-S-----S-------
--------S------S--------S------S----S--------------------------------S----------
-------------------------S------------------------------------------------------
-------------------------------S-------------------SSS----SS-----------S---S--S-
------S----S-S---------S---------------S------S------S---S------------------S-S-
---S-------------SS-------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-------SS-S-S-----------------
-S----S-----S-----------S-----------------------------S----------------SS-S-S---
S-SSSSS----------------S-----------S---------------S-----------S----------S-----
---------S---------SS---S------------------------S--S---------------------------
------------S----S---------------------------------------S----------------------
---------------S-------------------------------------S---------------------S---S
-----------------S-------------------------------S------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S---S---S-S-------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS---S-----------SS-S--S--SSSSSSSSSSSSS-SSSS--SS--S-SSSS------------S---S-----
-------SS-S----S-------S-------------------------S------------------------------
-----------------S-----------S----------------------------S---------------------
---------------S--S------------------S--------------S--S---------------SS-------
----S--------S--S------S----SS--------S-----------------------------S-S-S--S----
S---------------S-----S---------SS----------S----------SSSSSSS------S----S-S----
-S--------------S------SSSS-S-S-SSSS----S---------------------------------S-----
--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_978
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CC
TGTTCCTCTGCTCGTTTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_3144
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TTTGTGCAGTTCGAGGGAGG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>forward_2493
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ACGCATA
CATACACGCCCTC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_4090
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------AAAGCCCAGTACGTGCCTAC---------------------------------------------------
----------------------------------------------------------
