>input_sequence_39835
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-------------------------------ATGGACGTCGCCGTCGAGAGGCCGCCGCCGGTGAAAGAGGAGAACAAGC
CGGAGACCATGGAGGTAC--ACACACATAATCTGCTCCTTCTCTTTAAGTTGTCCAC-----TAGATGCATGTTAACCCG
GCAGTGCTGTGCATCACCATGAATAATTGAGCTGGTGATCGATGAACGTGTACCCTATAGCTACATGTTCCTTCTTGAGA
TCGAGTTGTAACTTAATTAGCTTTAATTGTTTGGCCTGCAGATCGCAAGCGCGCTTCCAATGGTCCTCGAGAGTTTCCCA
TCCACGCAAAGAAATTCGATCACCACCAGCAAGGTACTACTACA------AACTATGATCTGCAAGTCAAACTGAGAGCT
GTTTAATTAGGAGTGCTATGTAGTAAGAAATAGTACTAGTAGTAGAAGCAAGTTAAGAATGAATTGCAC--CAAATTAAA
GATCGAATCATGTGGGA-TTATTTACGAAGAATCACTAGTACGATG----TACAGTTCTCATCATCTAATGATTTCTCTT
GGGTATTGTGCATGTGCAGGACGACAAGCTGGAGGCGACCAAGGCGGAGATGGGCGAGGTGAGGGAGGAGAACGAGCGCC
TCAAGACGCTGCTCTCCCACATCGTCAGGGACTACCAGTCGCTCCAGACGCACTTCCAGGACGCCGTCAAGGTCAAGCAC
CAAGCACCGGCCGCCGACAAGCTCCCTGCAGCCTCCGCGCCGGCACCCACCGC------CGACGATCTCGTCTCCCTGAG
CCTCGGCAGCGGCGGTTACGCCCGCCCCAAGGGCGCCCACCAGAGGTCGCTGTCGTCGTCGTCCTCCGGAACCGAGACCG
ACCCCGACGATCAGCTGTCGCTCGGGCTCAGCAGCCGTCGCTCCACTGACGGCGACAACAGGCAGGTCGCCCGCCCGTCA
GCGACGCCCCTTATGAACCTCAGCTCCGACAGCAGCGCCGACGACTCCGCCGCGCCCGGTAGCGACCTGCCGGCCGCCGC
TTGCCCACCGGCGACCAAAGCACGCAAGAGCCCCAGCGCCGGGGTCGACGGAGCCGACGACGAGGTGCTCCAGCAGCAGG
CCAAGAAGGCTAGGGTTTCCGTCCGTGTCAAATGCGACACCCCCACGGTACGTTTGCGCATAGTACA-----ACATACAG
TACA---AAATTGCATGCCACAAGAAAATACTTTTGAATTGGTTTGAATTCAAAATCATGATGAGCTAATGAGTTCTCTG
CGTGTTGATGATGAACAGATGAACGATGGATGCCAATGGCGGAAGTACGGGCAAAAGATCTCCAAGGGGAACCCGTGCCC
GCGCGCCTACTACCGGTGCACCGTGGCACCGTCCTGCCCGGTGCGGAAGCAGGTGCAGAGATGCGCCGACGACATGTCCA
TCCTGATCACGACCTACGAGGGCACGCACAGCCACCCGCTGCCGCCGGCCGCCGCGGCCATGGCGTCCACCACCTCCGCC
GCGGCGTCCATGCTGCTCGCCGGCTCTTCCTCGTCCTCGTCCCACGGACACCACCTCCCTTTCGCGTCCGCAGGGCTCCT
GGGCCCGACCACCATCTCCACCATCGCGTCCTGCCCCACCGTCACGCTCGACCTCACCGCCCCGCACTCGCTCATGCAGC
AGCAGTACCAGTCTCCCTACGCGGCAGGGTACGAGTCCAAGGCGCTGCCGGCGGCGTGGAGCAGCGGCTACCTGGCGCCG
TACGCCGGGGGGCTTCCGTTCTACGGCAAGAGCTCCTTGCCGGCAATGGGGCAGCATTTCGGCCTGGGCATGGCGACGAC
GAGGGCGGAGCAGCTGTACGGCGCCGCCCATTCGTCGTCGTACCTGCAGAGAACGTCCAGCGGCGGCGGCGTCCATGGCG
CGCCCGCGGCCGCGCCGGCGGTGACGGACACGATCGCGAAGGCGATCACGTTGGACCCGAGCTTCCAGTCGGTGCTGGCG
GCGGCGATCACGTCCTACATGGGGCGCGGCGCTGGCGCGGCGGCGCACAAGTGA--------------------------
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----------------------
>chr3B_1_TraesCS3B01G130000
CAGTGACCGATCCGAGTTTTCGCTGTTACTACGTTTGACCCGCTGCATGCACGTAAATCCTGAATCAGTACTGCGTGTGT
GCGTCACTCACGTCGAG----GCGTTATTCGAGAATTCAGACC--------------ATATTTTTACGTGGAGAGGAGAA
CAGTTCAGACTCAAATTGGACAGACCGACCGACCGACCGATGGCTGGCTGAACAATTCCGATCACCAGTTGCTTGCTTCT
CCGGGTTAGCCGTACGAAAGTCAACACACAAGACGG-CCCCAAACGAATTCAACGCT---AGCTGCACGCTCATGCTGCG
TGCGTACATACGCTAACCAAGAACACAT---------CTAAGCTAGCTAAGTCAAAGCCTCTCTCTCGGAGCGAAAGGGA
AGGATGATTGGATGTATGAAGCAGGTCGCACGTCCGTGCGTGCGTGCGTGCGATCCGCATTCGGAGGGGGGCTAGCTCGC
TCGCGGAACCAACGC-----GGCGGGGGCCGGCGACTTGCAGCACACGTTGTGGGCGGCGACGACGCTGACGACGGCCAC
GGGCGGTGGTGACCACCGCGCGCGAGGGCGGTATTATATTGGGGAATGGGGAAGCCAAGGCAGCCTGCTTACCTCACCCG
CTAGCAGGCAGGCAGGTCTGGACGGGTGAGGTA-------GCTGCCCATGAGGGAGGCTGG--------GTACACGCGTT
GACATTGTTTATGAGCTCGTTTGCTCGCT----CGA------TGGTCTGGACGGGAACCAGCAACCGGGCCGCCGTGATA
-----GTAGGT--TAAGGAGCCAGGCACTGGGATTTGAGATTTGGTACGCGGAGCACGCAGCAACTGCTGGTTTTCGATT
AGTTTAATCCCCGGCGAGTCAGAAAGTGTAGGCTTCG---TCCTAGTCGTCGTCGTCGCTTCGATTCCGATCCTTCTTTA
TAAGGAGGGCGCGGGGCTACTGCAACCACAAGGCGTCTCTTGCTCATCCAAAGCGAACAAAGCTCCCTCCATCTCGTGGC
TAGCTGCTTGATCTTTGTGACTGATCCATCCATGGACGTCGCCGTCGAGAGGCCGCCGCCGGTGAAAGAGGAGAACAAGC
CGGAGACCATGGAGGTAC--ACACACATAATCTGCTCCTTCTCTTTAAGTTGTCCAC-----TAGATGCATGTTAACCCG
GCAGTGCTGTGCATCACCATGAATAATTGAGCTGGTGATCGATGAACGTGTACCCTATAGCTACATGTTCCTTCTTGAGA
TCGAGTTGTAACTTAATTAGCTTTAATTGTTTGGCCTGCAGATCGCAAGCGCGCTTCCAATGGTCCTCGAGAGTTTCCCA
TCCACGCAAAGAAATTCGATCACCACCAGCAAGGTACTACTACA------AACTATGATCTGCAAGTCAAACTGAGAGCT
GTTTAATTAGGAGTGCTATGTAGTAAGAAATAGTACTAGTAGTAGAAGCAAGTTAAGAATGAATTGCAC--CAAATTAAA
GATCGAATCATGTGGGA-TTATTTACGAAGAATCACTAGTACGATG----TACAGTTCTCATCATCTAATGATTTCTCTT
GGGTATTGTGCATGTGCAGGACGACAAGCTGGAGGCGACCAAGGCGGAGATGGGCGAGGTGAGGGAGGAGAACGAGCGCC
TCAAGACGCTGCTCTCCCACATCGTCAGGGACTACCAGTCGCTCCAGACGCACTTCCAGGACGCCGTCAAGGTCAAGCAC
CAAGCACCGGCCGCCGACAAGCTCCCTGCAGCCTCCGCGCCGGCACCCACCGC------CGACGATCTCGTCTCCCTGAG
CCTCGGCAGCGGCGGTTACGCCCGCCCCAAGGGCGCCCACCAGAGGTCGCTGTCGTCGTCGTCCTCCGGAACCGAGACCG
ACCCCGACGATCAGCTGTCGCTCGGGCTCAGCAGCCGTCGCTCCACTGACGGCGACAACAGGCAGGTCGCCCGCCCGTCA
GCGACGCCCCTTATGAACCTCAGCTCCGACAGCAGCGCCGACGACTCCGCCGCGCCCGGTAGCGACCTGCCGGCCGCCGC
TTGCCCACCGGCGACCAAAGCACGCAAGAGCCCCAGCGCCGGGGTCGACGGAGCCGACGACGAGGTGCTCCAGCAGCAGG
CCAAGAAGGCTAGGGTTTCCGTCCGTGTCAAATGCGACACCCCCACGGTACGTTTGCGCATAGTACA-----ACATACAG
TACA---AAATTGCATGCCACAAGAAAATACTTTTGAATTGGTTTGAATTCAAAATCATGATGAGCTAATGAGTTCTCTG
CGTGTTGATGATGAACAGATGAACGATGGATGCCAATGGCGGAAGTACGGGCAAAAGATCTCCAAGGGGAACCCGTGCCC
GCGCGCCTACTACCGGTGCACCGTGGCACCGTCCTGCCCGGTGCGGAAGCAGGTGCAGAGATGCGCCGACGACATGTCCA
TCCTGATCACGACCTACGAGGGCACGCACAGCCACCCGCTGCCGCCGGCCGCCGCGGCCATGGCGTCCACCACCTCCGCC
GCGGCGTCCATGCTGCTCGCCGGCTCTTCCTCGTCCTCGTCCCACGGACACCACCTCCCTTTCGCGTCCGCAGGGCTCCT
GGGCCCGACCACCATCTCCACCATCGCGTCCTGCCCCACCGTCACGCTCGACCTCACCGCCCCGCACTCGCTCATGCAGC
AGCAGTACCAGTCTCCCTACGCGGCAGGGTACGAGTCCAAGGCGCTGCCGGCGGCGTGGAGCAGCGGCTACCTGGCGCCG
TACGCCGGGGGGCTTCCGTTCTACGGCAAGAGCTCCTTGCCGGCAATGGGGCAGCATTTCGGCCTGGGCATGGCGACGAC
GAGGGCGGAGCAGCTGTACGGCGCCGCCCATTCGTCGTCGTACCTGCAGAGAACGTCCAGCGGCGGCGGCGTCCATGGCG
CGCCCGCGGCCGCGCCGGCGGTGACGGACACGATCGCGAAGGCGATCACGTTGGACCCGAGCTTCCAGTCGGTGCTGGCG
GCGGCGATCACGTCCTACATGGGGCGCGGCGCTGGCGCGGCGGCGCACAAGTGATCGATCGACCTCGGGCGGTGTAGATT
TCTTTTTTGTTTATAGGTCCGTGGATTTATCCTTGTAT--GCAGTTAAATTTACTTCGTTTTGGTGTTATGA--AATTGC
CTTGGGAGATCGAC--ATGGTCATCGATCTAGTCTAGGGATTAGTTGATGTACAATCAATTGCACATAGATGGCATGGAT
GAGTCAACTGT--ATGTACTGTGAGAAAGAAAGCGATCAGATTGTCCCAGCTGTATATGCACATAGCCAGGCATGTGATT
TAGGGGATTAAACTTGTTTATGCTCTCATATACCAACTTGATCTTAGGGTTCCATACGAGATAAAGCACAAAGTTTGTGG
CGTTATGGTGTGCCGGACTTGGTGTTTTGTTGACATTCAGTTCATATAAATACCAGGGTTACTCCGTCTCACTGAGAAAT
AGGGAACTATTTGGACATAGAGGCACAAGACATCACCGAGGTGTTCTTATCAATAACACAGGAATGATTAAAGTGAGACA
TTTATGAATCCACAATTGGTTTAGGATTACAACGAGATGGATGAAAGAGTTGGTGTCGATGGCATGGATGATGACCATGG
AGATCGACGTCGTGGTCTATGTGATTGAAGCAATGGTGAGGTGGAGACCCTTATGTTGATTCCCCATCCGGACCCCTTCC
GGTCCTGAGGTTCTGATATTGTTTCGTATGGTGGAATCTCTCTATTTGTCAGATCCAATTGCATGGGATGAAAGTAGTTG
ACCCAAGGGAGGCGGCGGCGTGCGGTATGACCGCCGCTACGAGTAGTTGTGCTCGTACTACACATCGTCTTCTCTTTTGG
AGAGCCGAATGCAGTTTCCTGACACATCTTCTCATCGTATGGAAGGTTTTATGGCGTCCAATCAACATATTTTCCACCAA
AAATGAGTGTTCTCTAATGAATGTTCCCAATCTCGTGATTCCGGGGATCTTGGTGAAATCAAACAAAAACGGGCAAACAA
TCGCAGTAAAATGCTACATCTA
>chr3D_4
---TGACCGGTCCGAGTCCTCGCTCTTACTACGTTTGACCTGCTGCATGCACGTAAATCCTGAATCGATACTACGTGCGT
GCGTCACTCACGTCGAGCAAGGCGTTATATCAGAATTTCCGCATCATTTTATGCTATATATTTTTACGTGGAGAGGAGAA
CAGTTCAGACTCAAATTGGACCGACCGGCCGCTGG-----------------------------CCAGTTGCTTGCTTCT
CCGGGTTAGCCGTACGAAAGTCAACACGTAAAACGGCCCCAAAACGAATTCAACGCTAGCAGCTGCACGCTCATGCTGCG
TGCGTACATACGCTAACCAAGAACACATCTAAGCTAGCTA-----GCTAAGTCAAAGCCTCTCTCTCAGAGCAAAACGGA
AGGATGATTGCACAATGA----AGGTCGCACGCACGTACGTGCGTGCGTGCGATCCGCATTCGGAGGGGAGGGAGCTCGC
TCGCGGAACCAACGCTGAGGGGAGGGGGCCGGCGACTTGCAGGACACGTTGTGGGCGGCGACGACGCTGACGACGGCCAC
GGCCGGTGGTGACCACCGCGCGCGAGGGCGGTATTATATTGGGGAATGGGGAAGCCAAGGCAGCCTGCTTACCTCACTCG
CTCGCTAGCTAGCTTGGTAGACCTGCCTGCCTGC----CTGCTGCCCATGAGGGAGGCTGG--------GTACACGCGTT
GACATTGTTTATGAGCTCGCTCGCTCTCT----CGCTCGCTCTGGTCTGGACGGGAACCAGCAACCGAGCCGCCGTGATG
GTACGGTAGGT--TAAGGAGCCGGGCACTGGGATTTGAGATTTGGTACGCGGAGCACGCAGCAACTGCTGTTTATCCATT
AGTTTAATCCCCGGCGAGTCAGAAAGTGTAGGCTTCGTCGTCCTAGTCGTCGTCGTCGCTTCGACTCCGATCCTTCTTTA
TAAGGAGGGCGCGGGGCTGCTGCAACCACAAGGCGTCTCTTGCTCATCCAAAGCAAACAAAGCTCCCTCTCTGCAGGTTC
GCCATCTC--------GTGACTGATCCGTCCATGGACGTCGCCGTCGAGAGGCCGCCGCCGGTGAAAGAGGAGAACAAGC
CGGAGACCATGGAGGTATGTACACACATCC------------CTTTAAGTTGTCTAC-----TAGATGCATGTTAACCCG
GCAGTG--------------------TTGAGTTGCTGATCGATGAGCGTGTACCCTA------CATGTTCGTTCTTGAGA
TCCAGCTGAAACTGAATTAGCTTCAATTCTTTGGCCTGCAGATCGCAAGCGCGCTTCCAATGGTCCTCGAGAGTTTCCCG
TCCACGCAAAGAAATTCGATCACCACCAGCAAGGTACTGCAAACTACTCCG--TATGATCTGAAAGTCAAATTGAGAGCT
GGTTAATTAGGAGTACCATGTAAGAAAT---------------AGAAGCAAGTTGAGAATGAATTGCAC--CAAATTAAA
GATCGAACCATGTGTGTTTATTTTATGAAGAATCGCTCGTA------------------CATCATCTAATGATTTCTCCT
GGGTATTGTGCATGTGCAGGACGACAAGCTGGAGGCGACCAAGGCGGAGATGGGCGAGGTGAGGGAGGAGAACGAGCGCC
TCAAGACGCTGCTCTCCCACATCGTCAGGGACTACCAGTCGCTCCAGACGCACTTCCAGGACGCCGTCAAGGTCAAGCAC
CAAGCACCGGCCGCCGACAAGCTCCCTGCCGCCCCCGCGCCGGCGCCTACCGCTACCACCGACGATCTCGTCTCTCTGTG
CCTCGGCAGCGGCGGTTACGCTCGCCCGAAGGGCGCCCACCAGAGGTCGCTGTCGTCGTCGTCGTCCGGCACCGAGACCG
ACCCCGACGATCAGCTGTCGCTCGGGCTGAGCAGCCGTCGCTCTACGGACGGCGACGACAGGCAGGCCGCCCGCCCGTCG
GCTACGCCCCTTATGAACCTCAGCTCCGACAGCAGCGCGGACGACGACGCCGCGCCCGGTAGCGGGCTGCCGGCCGCCGC
GTGCCCGCCGGCGACCAAAGCGCGCAAGAGCCCCGGCGCCGGGGTCGACGGAGCCGACGACGAGGTGCTCCAGCAGCAGG
CCAAGAAGGCTAGGGTTTCCGTCCGTGTCAAATGCGACACCCCCACGGTACGTTCGCGCATACAACATACATACGTACAG
TACA---AGATTCTGTACGTGTTTTCATGATGAAAATACT--TTTGAATTCAAAATCATGATGAGCTAACCATGTT--TG
TGTGTTGATGATGAGCAGATGAACGATGGGTGCCAATGGCGGAAGTACGGGCAGAAGATCTCCAAGGGGAACCCGTGCCC
GCGCGCCTACTACCGGTGCACCGTGGCGCCGTCCTGCCCGGTGCGGAAGCAGGTGCAGAGATGCGCCGACGACATGTCCA
TCCTGATCACGACGTACGAGGGCACGCACAGCCACCCGCTGCCGCCGGCCGCCGCGGCCATGGCGTCCACCACCTCCGCC
GCTGCTTCCATGCTGCTCGCCGGCTCTTCCTCGTCCTCGTCCCACGGGCACCACCTCCCTTTCCCGTCCGCGGGGCTCCT
GGGCCCGACCACCATCTCCACCATCGCGTCCTGCCCCACCGTCACGCTCGACCTCACCGCCCCGCACTCGCTCATGCAGC
AGCAGTACCAGTCTCCCTACGCGGCAGGGTACGAGTCCAAGGCGCTGCCGGCGGCGTGGAGCAGCGGCTACCTGGCGCCG
TACGCCGGGGGGCTGCCGTACTACGGCAAGAGCTCCTTGCCGGCGATGGGGCAGCATTTCGGCCTGGGCATGGCGACGAC
GAGGGCGGAGCAGCTGTACGGCGCCGCCCATTCGTCCTCGTACCTGCAGAGAACGTCCAGCGGCGGCGTCGTCCATGGCG
CGCCCGCGGCCGCGCCGGCGGTGACGGACACGATCGCGAAGGCGATCACCTCGGACCCGAGCTTCCAGTCGGTGCTGGCG
GCGGCGATCACGTCCTACATGGGGCGCGGCGCTGGGGCGGCGGCGCACAAGTGATCGATCGACCTCGCGCCGTGTAGATT
TCTTTTTGGTTTAGGCCCGTGGA---TTATCCTTGTATACGCAGTTAAGTTTACTTCGTTTTGGTGTTATGCTGAATTGG
CTTGGGAGATCGACACATGGTCATCGATCTAGTCTAGGGATTAGTTGATGTACAATTAATTGCACATATATGGCATGGAT
GAGTCAACTGTATATGTACTGTGAGAAAGAAAGCGATCAGATCGTCCCAGCTGTATATGCACATAGCCAGGCATGTGATT
TAGGGGATTAAACTTGTTTATGCTCTCATATACCAAGTTGATCTTAGGGTTCCATACGCGATAAAGCACAAAGTTTGTGG
CGTTATGGTGTGCTGGACTTGGTGTTTTGTTGACATTCGGTTCATATAAATAATAGGGTTCCTCCATCTCACCGAGAAAT
AGGGATCTACTCAGACATAGAGGCACAAGACATCATCAAGGTGTTCTTATCAATAACGTAGGAATGATTGAAGCGAGACA
CTTATGAATCCACAATTGGTTTAGGATTACAACAAGATGGATGGAAGAGTTGGTGTTGATGGCATGGGTGATGATGATGG
AGATCGATGTCGTGGTCTATGTGATTGAAGCAATAGTGAGTTGGAGACCCTTATATTGATTCCCTCTCCGGACCCCTACC
GATGGTGAAGTTTTGATATTATTTCGTATGGTAGAATCTCTTTGTTTGTCAGATCCGATTGCACGAGATGGAAGTAGTCG
ACCCAAGGGAGACGACGCCGTGCCGTATGACCGCTTCTACGAGTGGTTGTGCTCGTACCACACATCGTGTTCA-TTCTGG
AGAGCCGAATGCAGTTTCCTAACACATCTTCTCATCGTATGGAAGGTTTTATGGCATCCAATCAACATATATTCTACCAA
AAATGAGTGTTCTCTAATGAATGTTCCCAATCTCGTGATTCCAGGGATCTTGGTGAAATCAAACAAAAACAGGCAAACGA
TCGCAGTAAAATGCTACATCTA
>chr3A_200
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----------------------------CCGATGG-----------------------------CCAGTTGCTTGCTTCT
CCGGGTTAGCCGTACGAAAGTCAACACGTAAAACGGCCCCAGAACGAGTTCAACGCT---GGCTGCACGCTCATGCTGCG
TGCGTACATACGCTAACCAAGAACACAT---------CTA-----GCTAAGTCAAAGCCTCTCTCTCAGAGCGAAAGGGA
AGGATGATTGGACAATGA----AGGTCGCACGTA--------CGTGCGTGCGATCCGCATTCGGAGGGGAGCTCGCTCGC
TCGTGGAACCAACGC-----GGCGGGGGGCGGCGACTTGCAGGACACGTTGTGGGCGGCGACGACGCTGACGACGGCCAC
---CGGTGGTGACCACCGGCCGCGAGGGCGGTATTATATTGGGGAGCGGGGAAGCCAAGGCAGCCTGCTGACCTCA----
CTCGCTAGCTAGCTTGGTAGACCTGCCTGCCTGCTTGCCTGCTGCCCATGAGGGAGGCTGGCTAGCCGGGTACACGCGTT
GACATTGTTTATAAGCTCGTTTGCTCGCTCGATCGG------TGGTCTGGACGGGAACCAGCAACCGAGCCGCCGTGATG
GTAGGTTAAGGAATAAGGAGCCAGGCACTGGGATTTGAGATTTGATACGCGGGCCACGCAGCAGCTGCTGGTTATCCATT
AGTTTAATCCCCGGCGAGTCAGAAAGTGTAGGCTTCGACGTCCTAGTCGTCGTCGTCGCTCCGATTCCGATCCTTCTTTA
TAAGGAGGGCGCGGGGCTACTGCAACCACAAGCCGTCTCTTGCTCATCCAAAGCAAACAAAGCTCCCTCTCTCCTTT---
GCCATCTC--------GTGACTGATCCGTCCATGGACGTTGCCGTCGAGAGGCCGCCGCCGGTGAAAGAGGAGAACAAGC
CGGAGACCATGGATGTATGTACACGCATAATCTGCTCCTTTCC-TTGAGTTGTCTACTAGAGTAGATGCATGTTAACTCG
GCGGTGCTGTGCATCACCATGAATAATTGAGTTGCTGATCGATGAGCGTGTACCCTATAGCTACATGTTCGTTCTTGAGA
TCGAGCTGAAACTGAATTAGCTTTAATTGTTTGGTCTGCAGATCGCAAGCGCCCTTCCGATGGTCCTTGAGAGTTTCCCG
TCCACGCAAAGAAATCCGATCACCACCAGCAAGGTACGAACTACAGTACGAACTATGATCTGAAAGTCAAATTGAGAGCT
GTTTAATTAGT------ATGTAAGAAAC---------------AGAAGCAAGTTGAGAATGAATTGCACACCAAATTAAA
TATCGTG----------TTTATTTACGAAGAATCACTAGTATGATACGTATATAGTTCGCATCATCTAATGATTTTTCTT
GGTTAT----CATGTCCAGGACGACAAGCTGGAGGCGACCAAGGCGGAGATGGGCGAGGTGAGGGAGGAGAACGAGCGCC
TCAAGACGCTGCTCTCCCACATCGTCAGGGACTACCAGTCGCTCCAGACGCACTTCCAGGACGCCGTCAAGGTCAAGCAC
CAACCACCGGCCGCCGACAAGCTCCCTGCCGCCCCCGCGCCGGCGCCTACCGC------CGACGATCTCGTCTCTCTGTG
CCTCGGCAGCGGCGGTTACGCCCGTCCCAAGGGCGCCCACCAGAGGTCGCTGTCCTCGTCGTCGTCCGGCACCGAGACCG
ACCCCGACGATCAGCTGTCGCTCGGGCTGAGCAGCCGCCGCTCCACGGACGGCGACGACAGGCAGGCCGCCCGCCCGTCG
GCTACGCCTCTTATGAACCTCAGCTCCGACAGCAGCGCGGACGACGACGCCGCGCCCGGTCACCAGCTGCCGGCCGCCGC
GTGCCCGCCGGCGACCAAAGCGCGCAAGAGCCCCGGCGCCGGGGTTGACGGAGCCGACGACGAGGTGCTCCAGCAGCAGG
CCAAGAAGGCTAGGGTTTCCGTCCGTGTCAAATGCGACACCCCCACGGTACGTTCGCGCTTAGTACA-----ACATACAT
ACGTACAAGATTCTGTACGTGTTTTCATGATGAAAATACT--TTTGAATTCAAAATCATGATGAGCTAACCAAGTT--TG
TGTGTTGATGATGAGCAGATGAACGATGGGTGCCAATGGCGGAAGTACGGGCAGAAGATCTCCAAGGGGAACCCGTGCCC
GCGCGCCTACTACCGGTGCACCGTGGCGCCGTCCTGCCCGGTGCGGAAGCAGGTGCAGAGATGCGCCGACGACATGTCCA
TCCTGATCACGACGTACGAGGGCACGCACAGCCACCCGCTGCCGCCGGCCGCCGCGGCCATGGCGTCCACCACCTCCGCC
GCGGCGTCCATGCTGCTCGCCGGCTCCTCCTCGTCCTCGTCCCACGGGCACCACCTCCCTTTCGCGTCCGCGGGGCTCCT
GGGCCCGACCACCATCTCCACCATCGCGTCCTGCCCCACCGTCACGCTCGACCTCACCGCCCCGCACTCGCTCATGCAGC
AGCAGTACCAGTCTCCCTACGCGGCAGGGTACGAGTCCAAGGCGCTGCCGGCGGCGTGGAGCAGCGGCTACCTGGCGCCG
TACGCCGGGGGCCTTCCGTTCTACGGCAAGAGCTCCTTGCCGGCGATGGGGCAGCATTTCGGCCTGGGCATGGCGACGAC
GAGGGCGGAGCAGCTGTACGGCGCCGCCCATTCGTCCTCGTACCTGCAGAGAACGTCCAGCGGCGGCGTCGTCCATGGCG
CGCCCGCGGCCGCGCCGGCGGTGACGGACACGATCGCGAAGGCGATCACGTCGGACCCGAGCTTCCAGTCGGTGCTGGCG
GCGGCGATCACGTCCTACATGGGGCGCGGCGCCGGGGCGGCGGCGCACAAGTGATCGATCGAC-TCGCGCCGTGTAGATC
TTT-----------------------------TTGTTCACGCAGTTAAATTTACTTCGTTTTGGTGTA----TGAATTGG
CTTGGGAGATCGACACATGGTCATCGATCTAGTCTAGGGATTAGTTGATGTACAATTAATTGCACATATATGGCATGGAT
GAGTCAACTGTATATGTACTGTGAGAAAGAAAGCGATCAGATCGTCCCAGCTGTATATGCACATAGCGAGGCATGTGATT
TAGGGGATTAAACTTGTTTATGCTCTCGTATACCAACTTGTTCTTAGGGTTCCATACGCGATGAAGCACAAAGTTTGTGG
CGTTATGGTGTGCCGGACTTGGTGTTTTGTTGACATTCAGTTCATAAAAATATCAGGGTTCCTCGATCTCACTGAGAAAT
AGGGATCTACTCAGACATAGAGGCACAAGACATCATCGAGGTGTTCTTATCAATAGCGTAGGAATGATTAAAGTGAGACA
CTTGTGAATCCACAATTGGTTTAGGATTACAATGAAACGGATGGAAGAGTTGTTGTCGATGGCATGGATGATGATGATGG
AGATCGACGTCGTGGTCTGTGTAATTGAAGCAATGGTGAGGTAAAGACCCTTATGTCGATTCCCCCTCCGG---------
--TGGTGAGGTTCTGATATTGCTTCGTATGGTGGAATCTCTCTGTTTGTCAGATTCGATTGCATGGGATGGAAGTAGTCG
ACCCAAGGGAGACGGCGCCGTGCGGTACGACCGCTGCTACGAGTGGTTGTGCTCGTACCACACATCATCCTCTCTTCTGG
AGAGCCGAATGCAGTTTCCTGACACATCTTCTCATCGTATGGAAGGTTTTATGGCATCCAATC-ACATATTTTCTACCAC
AAATGAGCGTTCTCTAATGAATGTTCCCAATCTCGTGATTCCGGGGATCTTGGTGAAATCAAAGAAAAACGGGCAAACGA
TCGCAGTAAACTGCTACATCTA
>SNPs
SSS------S-------SS-----S---------------S-------------------------SS----S----S--
----------------------------SSS------SSSS-S-------------------------------------
---------------------S-----S----SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
---------------------------SS--S--------S---------------------------------------
----------------------------------------SSSSS----------------------S------------
------------SSSSSSSSSS-----------S---S-------------------------------S----------
------------------------------------------S-------------------------------------
--S--------------------------------------------------------------------------S--
--S--SS--SS--SS-SSS-SS-S-SSSSSS-S-----------------------------------------------
-----------------------------------S-------------------------------S-----------S
-------------------------------------------------------------------------S--S---
--------------------------------------------------------------------------------
------------------------------------------------------S--------------SS--SS--SS-
SSSS-SSSSSSSSSSS-----------S----------------------------------------------------
-----------------S----------------------SS------------S-------------------------
-------------------------------S--S----------S------------------------S---------
-----S--S----S-----------------------------------------------------------------S
----------------------------------------S-SS------------------S--------S--------
--------------S-S-----SS--SSSSSSSSSSSSSSSSS-----------S-------------------------
-------S------S-S------------------------S---S------S-----S---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S---S----------S--S--------------------------S---S-
---------------------------------------------------------------S-----S----------
----------------------------S-----------------S---------S---------S------------S
--S-----------------------------------S------SS------------------S--------------
S-----S--------------S------------S---------------------------------------------
------------------------------------------------------S-------------------------
--------S---SSS-S-SSSSSSSS-SS-SSSSSSS-S-SS---------------------------SS-SS-SSS--
S-------------S--------------S-----------------------S--------------------------
---------------------------S----------------------------------------------------
-------------S------------------------------------------------------------------
-----------------------------------------------S-----------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
------------------------------------S-------------------------------S-----------
---------------------------------------------------S----------------------------
-----------------------------------S-------------------------------S--S---------
-------S-----SSSSSSS-SSSSS---------------------------------------------S-------S
--------------------------------------------------------S-----------S-----------
------------------------------------------S-------------------------------------
----------------------------------------------------------S---------------------
----------------------------------------------------S-------S----S--------------
-----S---S-SS----------------------S---------------------SS---------------------
S------------------------------------------S------------------------------SS----
-----------------------------------------------------------------S-----------S--
-S-SS--------------------------------------S------------S-------------S-------S-
-----------S-----S----------------S---------S-------------S-----------------S---
-------------------------------------------------------S------------------S-----
------------------------------------------------------------------------------S-
----------------------
>forward_193
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-------------AATTGGACAGACCGACCGAC-----------------------------------------------
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>reverse_2003
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--GACGCCCCTTATGAACCTCA----------------------------------------------------------
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>forward_647
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-------------------------------------------------------------------CTTACCTCACCCG
CTAGCAG-------------------------------------------------------------------------
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>reverse_2335
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--------------ACAGATGAACGATGGATGCCA---------------------------------------------
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----------------------
>forward_1360
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------------------------------------------------------------TGGTCCTCGAGAGTTTCCCA
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_2917
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GTCGTACCTGCAGAGAACGT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>forward_2494
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGTCCA
TCCTGATCACGACC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>reverse_3917
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TTGG
AGAGCCGAATGCAGTT----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
