>input_sequence_39778
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATGAAGATCATTGAAAAATGTGACGGTTTACCACTTGCC
ATTAAAGTGATGGGAGGACTCTTAAGCACAAGACACCCAAGCGAACGTGAATGGGAGATTGTTCTGAACAAGAATCTCGA
ATGGGAAGAGCATGGGTCACAGGAGGAACTGAACTACTCGGTACATCTGAGCTACGACGATCTATCTCCAGAGCTGAAGC
AGTGCTTTCTATATTACTCACTCTTCCCCAAGGGTTCAGAATTCCTAGAGGATATAGCCATTAGCATGTGGATTAGTGAA
GGGTTCGTTCAGGCCGACGAGAGGTCAGAGTCAGACCAACTAGACCTAGAGGAGATAGGAGCTGAGTACCACCGGGAGTT
AGTCGCCAGGAACCTTCTAGAGACCAACGAGTCAGCCGAGAGCAGATGGGCCTACATCATGCACGATGTTGTCCGTTCCT
TTGCTCGGTTTGTGGCTAGGGAAGAAGCTCTTGTGGTTCTCAAGGAGCAGACTGACATTAGAAGCCTTCTTTCACATAAC
CAGAGAATCCGCCGTCTGTCCATGAAATTAACCAATTCAGTACTGGAGTGGGATATCCTAGAAAAGCTGGAATCACTAAG
GACACTGGTTATAGCCTGCAACTTCAAGCCCGGCAGTGGTTCTGGTCCTTCACTTGCTTCTTCTTTTGCTAGCTTACGGG
CACTGGATATCAGCTTTGCAGACTGCGACTGGTTGGTCGACCATTTGTCTCAGCTGAGGCACCTACGGTATTTGTCCTTC
ACTGACACGGATGTATCTAGGCTGCCCCATGACATCCACAAGATGAAGTTCCTTGAGCACATTGCACTGTTCAACTGCAG
GAAGCTGGACAAGCTTCCTGACGGCATCGTAAAGCTGGGGCGTCTAAGGTATCTCTCCATAGATGGGTCCAGTGTTGATG
TTGTGCCGAAGGGGTTTGGCGCGCTGACGAATCTGAGGTCAGTCTATGGGTTTCCGGCACAGATGGTTGGGGACTGGTGT
ACTTTAGAAGAACTGGAGCATCTTTCTCATCTTAGGACTCTTAGAATACATGGTCTGGAAAATGTGCCTGGTGGTTCGGT
TGTGGCAAGGGCCATGATCAGCAGCAAGAAGCATCTCAGCTTTCTGGACTTGATCTGCCACAAGAATGAGGAGGAAGATG
GAGTGGGAGGAGAACAGATTCCTGAAAAGGACCAGGAGCGAATTGAGGCGGTGTTCGATGAGCTCTGCCCACCGCCGTAT
CTGGAGGATCTGTTCATGACAGGATACTTCGGCTGTCGGGTGCCATATTGGATGCGGGCGCCAACTGCAACGGCCTTCAA
GAGCTTGACTGGCATCACGCTAACGCGTCTGCGCTGTTGCACCCAGCTACCCAATGGATTGTGCGGTATGCTCAGCCTGG
AAGGTCTAGCGATCGAGTGGGCTCCAGCCATCAAGCTTGTCGGGCCCGACTTCCAAGCCCTTCCAAGTGGAGATGGCGGC
AGCAGCGGCGCCATTGTTACAAGGCCATTCCCTAAGCTGACGAACCTGGAGCTGCACAACATGACGGGATGGGAGGAGTG
GGACTGGGCGGAGGAGGAGCAGGGCGGGGCCATCTCCATGCCTGCACTGGAGCATCTCAGCATCATCCATTGCATGCTCA
GCCGTCTCCCCCCGGGACTTGCTAGCAGCCGCAGGTATAACCTGAGAACGCTCGACCTCCGCAAGCTCAGCGTCCTAGCG
TCACTGGAGAATTTCCCTTCAGTCATGGAGCTCGACGTGCTCTACTGCCCCAAGCTCAAGAAGATCAGCGGCTTTGCGAT
GCTCCGAAGGATGGCCGTCACTGATTGCCCGGAGCTGGAGACGCTGGAAGGTGTCCCGGTGCTCAAGAGCTTGCTGCTGA
ATGATGAGCCATGGGAGATCATTGGGACGTCTGCGTATCATCAAGCTGGACAGCCGCGTCACCTCCCACAAAACCTCGCT
ATTATCA-GTAGCTCTGATCTCAGAGATGACTGA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>chr1D_1_TraesCS1D01G242200
CAATTGCAGGTCAGCAATTCACTTAGCTCATTTGTTTTGACCAAAACCAAACAAATT-CAAACCTTAAAAAGGCGCACAT
CTGATTCGACCATTTTAATCTACTCCAGCTTTATATATTATTTTGCAAATTAAACTTGCCTTTCTGTTTTCATTTGAGTG
TTTTCCTATAATTTTATGATATTATAATGGGTTTTTCCAAAACTTGGTAACATGGCATGTGACGTGATCTCATGTCAAGT
CAAAACGAGTTTAACTCGTCTCATGGGTGTACTTTATCAAATTTTGATAGTCAATTGCTCAATTTAGCTATTTTTTAGTT
GAAGTGTGCAATCTAAACTCTAGCAATAGTTGAGGTCCAAAATGCTCTCTTTTCCTTTTCGATATTGGAAAAGCATGTGA
TTACTTTTAGTTTTTTTTTTATTTTCTCTTTCTAAAATTTTGTATATTAATACTTTTTATATTTGAATATTAATATTTTA
TTCCTTTTTTGTATATTGAATATCAATATTTTTGTTCCAAAATAGATATTGAAACTATTTTAATTTTCCTATCCACGTTT
GTAGATTCTGAGATTTCGCTAGTTGGAAATTATTCCTGTTGTTTTGGGGATTGTCAGCTGTTAATGATGATCTTTGCATA
TTCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCGAGAGTCACTTTGATCAGCTAAAAGATGTTGGGATGAAGATCATTGAAAAATGTGACGGTTTACCACTTGCC
ATTAAAGTGATGGGAGGACTCTTAAGCACAAGACACCCAAGCGAACGTGAATGGGAGATTGTTCTGAACAAGAATCTCGA
ATGGGAAGAGCATGGGTCACAGGAGGAACTGAACTACTCGGTACATCTGAGCTACGACGATCTATCTCCAGAGCTGAAGC
AGTGCTTTCTATATTACTCACTCTTCCCCAAGGGTTCAGAATTCCTAGAGGATATAGCCATTAGCATGTGGATTAGTGAA
GGGTTCGTTCAGGCCGACGAGAGGTCAGAGTCAGACCAACTAGACCTAGAGGAGATAGGAGCTGAGTACCACCGGGAGTT
AGTCGCCAGGAACCTTCTAGAGACCAACGAGTCAGCCGAGAGCAGATGGGCCTACATCATGCACGATGTTGTCCGTTCCT
TTGCTCGGTTTGTGGCTAGGGAAGAAGCTCTTGTGGTTCTCAAGGAGCAGACTGACATTAGAAGCCTTCTTTCACATAAC
CAGAGAATCCGCCGTCTGTCCATGAAATTAACCAATTCAGTACTGGAGTGGGATATCCTAGAAAAGCTGGAATCACTAAG
GACACTGGTTATAGCCTGCAACTTCAAGCCCGGCAGTGGTTCTGGTCCTTCACTTGCTTCTTCTTTTGCTAGCTTACGGG
CACTGGATATCAGCTTTGCAGACTGCGACTGGTTGGTCGACCATTTGTCTCAGCTGAGGCACCTACGGTATTTGTCCTTC
ACTGACACGGATGTATCTAGGCTGCCCCATGACATCCACAAGATGAAGTTCCTTGAGCACATTGCACTGTTCAACTGCAG
GAAGCTGGACAAGCTTCCTGACGGCATCGTAAAGCTGGGGCGTCTAAGGTATCTCTCCATAGATGGGTCCAGTGTTGATG
TTGTGCCGAAGGGGTTTGGCGCGCTGACGAATCTGAGGTCAGTCTATGGGTTTCCGGCACAGATGGTTGGGGACTGGTGT
ACTTTAGAAGAACTGGAGCATCTTTCTCATCTTAGGACTCTTAGAATACATGGTCTGGAAAATGTGCCTGGTGGTTCGGT
TGTGGCAAGGGCCATGATCAGCAGCAAGAAGCATCTCAGCTTTCTGGACTTGATCTGCCACAAGAATGAGGAGGAAGATG
GAGTGGGAGGAGAACAGATTCCTGAAAAGGACCAGGAGCGAATTGAGGCGGTGTTCGATGAGCTCTGCCCACCGCCGTAT
CTGGAGGATCTGTTCATGACAGGATACTTCGGCTGTCGGGTGCCATATTGGATGCGGGCGCCAACTGCAACGGCCTTCAA
GAGCTTGACTGGCATCACGCTAACGCGTCTGCGCTGTTGCACCCAGCTACCCAATGGATTGTGCGGTATGCTCAGCCTGG
AAGGTCTAGCGATCGAGTGGGCTCCAGCCATCAAGCTTGTCGGGCCCGACTTCCAAGCCCTTCCAAGTGGAGATGGCGGC
AGCAGCGGCGCCATTGTTACAAGGCCATTCCCTAAGCTGACGAACCTGGAGCTGCACAACATGACGGGATGGGAGGAGTG
GGACTGGGCGGAGGAGGAGCAGGGCGGGGCCATCTCCATGCCTGCACTGGAGCATCTCAGCATCATCCATTGCATGCTCA
GCCGTCTCCCCCCGGGACTTGCTAGCAGCCGCAGGTATAACCTGAGAACGCTCGACCTCCGCAAGCTCAGCGTCCTAGCG
TCACTGGAGAATTTCCCTTCAGTCATGGAGCTCGACGTGCTCTACTGCCCCAAGCTCAAGAAGATCAGCGGCTTTGCGAT
GCTCCGAAGGATGGCCGTCACTGATTGCCCGGAGCTGGAGACGCTGGAAGGTGTCCCGGTGCTCAAGAGCTTGCTGCTGA
ATGATGAGCCATGGGAGATCATTGGGACGTCTGCGTATCATCAAGCTGGACAGCCGCGTCACCTCCCACAAAACCTCGCT
ATTATCA-GTAGCTCTGATCTCAGAGATGACTGACGTCTGATGTCTGATGACAGAAACAGAAGGCGCTATCGGCCGTCTG
CCCCCCATGCTTAAGAAAATATAACAAGAGGGACTCTAATGTAAGAATATAGCGAGTGACTGCAATATATTTCTCTTCCA
CTGAAGTTCTCCTTCGACTTTGAGCATTTACCTGGATCAACAATTAGTTTTCAGGCTTGGCGCCTTG-AATGGATGACTG
AAT-CGTGGAGGCATCAACATTTTCATACTTGTAATTTTGTCAGGTTTCCTTACATGAGTCGTAGACGGAGCCACGGCCT
ACCTACCTCTGTTCGGCACCGCAGCTTGAGTGCACGGAGTAAGGACATTCCTAACCGATCCCCTAAAAGGCCATAAGGAA
GA----------ATAAAT-TCGA--TTACTCCCTTATGGCGCACCTAGCCGATCCCCTATCCGGCTTAGTGAAGTAATTG
TTTAACTCCAACTCCTCAAA-T--CTCCCCAAATCCTCTTA-TTTTACTCACTCTTGCGGTGGCCGAGTAAAACTGGC--
--GCCAC--TCCCTTTCTCCTACCCCAC--GCTGCCCTGTCTCCCGCTTCCGGAGCCGCAGC--GCCTCATC--------
--GCCAGCATCGATTACCATCCGGCCGGCCGGAATGGATAGCCCGGACCCTTCCCTCACCCTGCCGGCTGTCGCCGTCGG
CGTTTTGCCGCCGGAAATCA-TCCATG---TGCTGCCACCCGCGTCCAAGAAGAGTTTGGGGATGAAAAAACCCC--AC-
--CGCGTCCAAGCTCCTCGTCCAACCGCCCCAATGGCCTCTGGGGTGGGCATCGCCTCTCTGGCAAAGGCCCGTCGCCCT
CCCGCCGC-----------ACCCGCCGGAGCCAAACGAGTTTGAAAGCCGACGGCGGCGGCGGTGGCGC---TCGAGGCG
GTCGAGAAGAAGAAGATGAAGAAGGCCAAAGTGGTGCCTCATCCTAGGCCGGCGCCTTGTGCAGCTACTCCGGCGCCCCC
TACGACCACTGCTCCGGTGCGGGTGGCGACCGCAGCCGGCAATAAGCATCACGGCC
>chr1A_1
CAATTGCAGGTCAGCAATTCACTCAGCTCATTTGTTTTGACCAAAACCAAACAAATTGCAAACCTTAAAAAGGCGCACAT
CTGATTTGACCATTTTAATCTACTCCAGCTTTATATATTATTTTGCAAATTAAACTTGCCTTTCTGTTTTCATTTTAGTG
TTTTCCTATAATTTTATGATATTATAATGGGGTTTTCCAAAACTTGGTAACATGGCATGTGACGTGATCTCATGTCAAGT
CAAAACGAGTTTAACTCGTCTCATGGGTGTACTTTGTCAAATTTTGATAGTCAATTGCTCAATTTAGCTATTTTTTAGTT
GAAGTGTGTAATCTAAACTCTAGCAATAGTTGAGGTCCAAAATGCTCTCTTTTCCTTTTCGATATTTGAAAAGCATGTGA
TTACTTTTAG---TTTTTTTATTTTCTGTTTCTAAAATTTTGTATATTAATAC-TTTTATATTTGAATACTAATATTTTA
TTCCCTTTTTTTATATTAAATATCAATATTTTTGTTCCAAAATAGATATTGAAACTATTTTAATTTTCCTACCCACGTTT
GTAGATTCTGAGATTTCGCTAGTTGGAAATTATACCTGTTGTTTTGGGGATTGTCAGCTGTTAATGATGATCTTTGCATA
TTCTGAGGAAACATTCACTTACACAAGATGTACATTTTGTGTATACTTGGATTGGATAATACCATTTTTAATTCTAATTT
TTAATAATTTATAGACACCATACTTTTTACAAAATTTACCAGTGGACATTTCTGTACATGTACTGCTACTTGATGTAAGG
ACGTCATATATTTACTACAAATACATACAAACATATATAGTACAATTCCTAATTCTTATATTGTTGCAGGATGA------
--------------------------------------------------------------------------------
-------CGAGAGTCACTTTGATCAGCTAAAAGATGTTGGGATGAAGATCATTGAAAAATGTGACGGTTTACCACTTGCC
ATTAAAGTGATGGGAGGACTCTTAAGCACAAGACACCCAAGCGAACGTGAATGGGAGATTGTTCTGAACAAGAATCTCGA
ATGGGAAGAGCATGGGTCACAGGAGGAACTGAACTACTCGGTACATCTGAGCTACGACGATCTATCTCCAGAGCTGAAGC
AGTGCTTTCTATATTACTCACTCTTCCCCAAGGGTTCAGAATTCCTAGAGGATATAGCCATTAGCATGTGGGTTAGTGAA
GGGTTTGTTCAGGCCGACGAGAGGTCAGAGTCAGACCAACTAGACCTAGAGGAGATAGGAGCTGAGTACCACCGGGAGTT
AGTCGCCAGGAACCTTCTAGAGACCAACGAGTCAGCTGAGAGCGGATGGGCCTACATCATGCACGATGTTGTCCGTTCCT
TTGCTCGGTTTGTGGCTAGGGAAGAAGCTCTTGTGGTTCTCAAGGAGCAGACCGACATTAGAAGCCTTCTTTCACATAAC
CAGAGAATCCGCCGTCTGTCCATGAAATTAACCAATTCAGTACTGGAGTGGGATATCCTAGAAAAGCTGGAATCACTAAG
GACACTGGTTATAGCCTGCAACTTCAAGCCCGGCAGTGGTTCTGGTCCTTCACTTGCTTCTTCTTTTGCTAGCTTACGGG
CACTGGATATCAGCTTTGCAGACTGCGACTGGTTGGTCGACCATTTGTCTCAGCTGAGGCACCTACGGTATTTGTCCTTC
ACTCAGACGGATGTATCTAGGCTGCCCCATGACATCCACAAGATGAAGTTCCTTGAGCACATTGCACTGTTCAACTGCAG
GAAGCTGGACAAGCTTCCTGACGGCATCGTAAAGCTGGGGCGTCTAAGGTATCTCTCCATAGATGGGTCCAGTGTTGATG
TTGTGCCCAAGGGGTTTGGCGCGCTGACGAATCTGAGGTCAGTCTATGGGTTTCCGGCAAAGATGGTTGGGGACTGGTGT
ACTTTAGAAGAACTGGAGCATCTCTTTCATCTTAGGACTCTTAGGATACATGGTCTGGAAAATGTGCCTGGTGGTTCAGT
GGCGGCAAGGGCCATGATCGGCAGCAAGAAGCATCTCAGCTTTCTGGACTTGATCTGCCACAAGAATGAGGAGGAAGATG
GAGTGGGAGGAGAACAGATTCCTGAAAAGGACCAGGAGCGAATTGAGGCGGTGTTCGATGAGCTCTGCCCACCGCCGTAC
CTGGAGGATCTGTTCATGGCAGGATACTTCGGCCGTCGGCTGCCATACTGGATGCGGGCGCCAACTGCAATGGCCTTCAA
GAGCTTGACTGGCATCACGCTAACGCGTCTGCGTTGTTGCACCCAGCTACCCGACGGATTGTGCGGGATGGTCAGCCTGG
AAGGGCTGGCGGTCAACTGGGCTCCGGCCATCAAGCTCGTCGGGCCCGACTTCCAAGCCCTTCCAAGTGGAAATGGCGGC
GCTGGTGACCTCTTCGTGACAAGACCGTTCCCTAAGCTGAAGAACCTGAAGCTGCACAACATGACGGGATGGGAGGAGTG
GGACTGGGCGGAGGAGGAGCAGGGCGGGGCCATCTCCATGCCTGCACTGGAGTATCTCAGCATCATCCATTGCATGCTCA
GCCGTCTCCCCCCGGGACTTGCTAGCAGCAACAGGTATAACCTGAGAACGCTCGACCTCAGCAAGCTCAGCGCCCTAGCG
TCGCTGGAGAATTTCCCTTCGGTCATGGAGCTCGATGTGCTCTACTGCCCCAAGCTCAAGAAGATCAGTGGCTTCGCGAT
GCTCCGAAGGATGGCCATCACTGATTGCCCGGAGCTGGAGACGCTGGAAGGTGTCCCGGTGCTCAAGAGCTTGCTGCTGA
ATGATGAGCCATGGGAGATTGTCGGGACGTCTGCGT---ATCAAGCTGGACAGCCGCGTCAGCTCCCACAAAACCTCACC
ATTACCAGGTAGCTCTGATCTTAGAGATGACTGACGTCTGATATCTGATG------ACAGAAGGCGCTATCGGCTGTCTG
CCCCCCATGCTTGAGAAAATATAACAAGAGGGACTGTAATGTAAGAATGTAGCGAGTGACTGCAATATATTTCTCTTCCA
CTGAAGTTCTCCTTCGACTTTGAGCATTCACCTTGACCAACAATTAGTTTTCAGGCTTGGCGCCTGTGAATGGATGACTG
AATCCGTGGAGGCATCAACATTTTCATACTTGTAATTTTGTCAGGTTTCCTTACATGGGT------------CACGGCCA
ACCTACCTCTGTTCGGCACCGCAGCTTGAGTGGACGGAGT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>chr1B_3181
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CCTATGAATGGACGACTG
AATCCGCGGAGGCATCAACATTTTCATACTTGTAATTTTGTCAGGTATCCTTACATGGCTCGTAGATAGAGCCACGACCT
ACCTACCTCTGTTTGGCACCGCAACTTGAGTGCATGGAATAAGGGCATGTTTAACCGATCCCCTAAAAGGCCATAAGGGA
GA----------ACAAAT-TTGGTTATACTTCCTTAGAGCGCACCTAGCCGATTCCCTATCTGTCTTAGTGGAGTAAAAA
ATTTACTCTAATTTCTCAAA-T--CCTCCAAATCTCCCTATTTTTACTC--CTCCCGCGGTGACCTGGTAAAACTGGC--
--GTCTC--TCTCTTTCTCCCACCC-AC--ACCGCCCTGTCTCCCTCCACCGGAGCCACAAC--GCCTCGCT--------
--GCCGCCACCGGTGACCACCTGGCTAGCCAGAATGGATAGCCCGAACCCTTCCCTCATCCCGCCGACCGTCGCCACTGG
CGTTTCACCACCGGAAATCA-TCCATG---CATCGCCACCCGCGCAGAAGAAGAGTTTGGGGATGAAAAAAACCC--AC-
--CACATCCAAGATCCTCCTCCAACCACCCCAATGGCCTCCTGGGTGGCCACCGCCTCTCCGGCAATAGCCCGCCGTCCT
CCCGCCGC-----------ACCCACCAGAGCCAAACGAGCTCGAAAGTCGATGACGGCG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>chr1B_3313
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GACTAAGGCCATTTCTAACCAATCCCCTAAAAGGCCATAAGGGA
GT----------AAAATT-TTGATTATATTCC-----ATCGCAACTAGCTGATCCCCTATCCGGCTTAGTGGAGTAATTC
TTTTACTCCAATTCCCAATATG--CTCCTCAATCTTCCTAA-ATTTACTCACTCCTGGGGTGGCCTAGTAAAACTCGT--
--GCCTC--TCTCTTTCTCCCACATTGT--GTCGCCCTGTATCCCGCTGTCGGAGATGCTAC--GCCCCACT--------
--TCCGCCACCGATGACCATCCAGCCAGCCGAAATCGATAGCCTGGACCCATCCCTCACCCCGCCGGACACCACAACCGA
--------------AAATCA-CACATG---TGCCGCCATCCGTGCAGAACAAGAGTTTTGGAATGAAAAAAAA-C--AC-
--CATGTCCAAGATCCTCCTCCAACCACCCCAATAGCCTCTGGGGTGGCCACCGCCTCTCCGAGAACGGACCGTCG----
-------CCCTCCCGCCGCACCTGCCGGCACCAAACAAGCTCGAAAGCCGACGACGGCAGTGTCGACGCTCGCCCATGCA
CCTGTCAAGAAGAAGATGAAGAAGGCCAAAGTGGCGCCTT-TCCTAGACCGACGCCTCATGCAGCTACTCCGG-------
--------------------------------------------------------
>chr1B_3313
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GACTAAGGCCATTTCTAACCAATCCCCTAAAAGGCCATAAGGGA
GT----------AAAATT-TTGATTATATTCC-----ATCGCAACTAGCTAATCCCCTATCCGGTTTAGTGGAGTAATTC
TTTTACTCCAATTCCCAATATG--CTCCTCAATCTTCCTAA-ATTTACTCACTCCTGGGGTGGCCTAGTAAAACTCGT--
--GCCTC--TCTCTTTCTCCCACATTGT--GTCGCCCTGTATCCCGCTGTCGGAGATGCTAC--GCCCCACT--------
--TCTGCCACCGTTGACCATCCAGCCGTCCGAAATCGATAGCCTGGACCCATCCCTCACCCCGCCGGACACCACAACTGA
--------------AAATCT-CACATG---TGCCGCTGTCCGCGCAGAACAAGAGTTTGGGAATGAAAAAAAA-C--AC-
--CATGTCCAAGATCCTCCTCCAACCACCCCAATGGCCTCTAGGGTGGCCACCGCCTCTCCGAGAACGGACCGTCG----
-------CCCTCCCGCCGCACCTACCGGCACCAAACAAGCTCGAAAGCCGATGACGGCAATGTCGACGCTCGCCCATGCG
CCTGTCAAGAAGAAGATGAAGAAGGCCAAAGTGGCGCCTT-TCCTAGACCGACGCCTCATGCAGCTACTCCGG-------
--------------------------------------------------------
>chr1D_3316
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TAAGGGCATTTATAATCCATCCCCTAAAAGGCCATAAGGGA
GT----------AAAAAA-TCGGTTATACTCCCTTATGGCGCACCTAGCCGATCACCTATCCGGCTTAATGGAGTAAAAA
ATTTACTCCAACTCCCAATATC--CCTCCAAATCTCCCTATTTTTTACTCACTCCCGCGACGACCGAGTAAAATTGGC--
--GCCTC--TCTCTTTCTCCCACCCCAC--ACCGCCTTGTCTCCCGCTGCCGGAGCCGCTGC--GCCCCGCT--------
--GCCACCACCAATGACCATCTGGCCGACCGGAATGGATAGCCCGGACCCTTCCCTCACCCCTCCGGCCATCGCCGTCGG
--------------AAATCA-TCCATG---CGCCACTGCCCGCGCCGAAGAAGAGTTTGGGGATAAAAAAACCCC--AT-
--CGTGTCCAAGCTCCTCTTCCAACCACCCCGATGGCCTTTGGGGTGGCCACCGCCTCTCTGGCAACGGCCCGCCG----
-------C-----------ACCCGTCAGAGGCAAACGAGCTCGAAAGCCGCCGACGGCGGC------ACTTGTGGAGGCG
GCCGCGACGAAGAAGATGAAGAAAGCCAAAGTGGCACCTCATCCTCTGCCGGCACCTCATGCAGCTACTCCGACGCCTCC
TATGGCCACTGCTTCGGCGCGGGCGGGCAGCGCAGCCGGCAACAAGCACCACGG--
>chr2D_3316
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TAAGGGCATTTCTAACCGATCCCCTAAAAGGCCATAAGGGG
GT----------AAA--T-TCAATTTTACTCCCTTACGATGCACCTAGCCGATCCCTTATCCGACT--GTGGAGTAAAAA
AATTACTCCAACTCCTCA------------AATCTCCTTAT-TTTTACACATCCCCGCGGTGCCCGAGTAGAAGTGGC--
--GC-TC--TCTTCCTC-CCTCCCCCAC--GCCGCCCTGCCTCCCGCCGCCGTTGCCGCCATGTGCCCCACC--------
--GCCGCCACCGATGA----CCGGCCAGCCAGAATGGATAGCCCAGCCCCTTCCCTCACTCCGCCGGCCACCGGCGCCGG
CTTTTCACCGCAGGAAATCA-CCCACG---CACCGCCGCCGGCGCCGAAGAAGAGTTTGGGTATGAAAAAACCC---AT-
--CGCGTCCAAG--CCTCCTCCAACCGCTCCAATGGCCTTCGGGGTGGCCACCGCCTCTCCGGCAACAGAACTTCGCCCT
CG-----------CGCCGCATCTACCGGAGACAAACCGACTCGAAAGTCGACGGCGGCGGT------GCTCGCCGAGGCG
GCCGCAAAGAAGATGATGAAGAAGGCCAAAGCGGCGCCTCGTTTTGGGCCGACGCCTCGTGCTGCAACTCCGGTGGCCCC
TACGTCCACTGCTCCAGCGCGTGCGGCGGCCGCAGCCGGCAACAAGCATCACGGC-
>chr7B_3316
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TAAGAGCATTTCTAACAGATCCCCTCAAAGGACATAAGGGA
GT----------AAAAAA-TATGTTTTACTCTCTTACAGCGCACCTAGCCGATCCATTATCTGGTTTAGTGGAGTAAAAT
TTTTACTCCACCTTCCTATTTT--CCTCGAAATCTCCCTAAAT-TAACTCCATCCCGTCGGGGCCGAGTAAAAGTGTC--
--GCCTC--TCTATCTCGCCCCTCCCG----CCGCACAATCTCCCACCCACGCAGCCACCAC--ACCACACC--------
--ACCACCACCAATGACCGTCGGGTCTACCGAAATGGTTAGCCCGACGCCTTCCCTCACCCCGCCGGCCACCGGCGCCGG
CTTTTCGCTGCCAGAAACCA-CCCACGCACCGCCGCCGCCGTCGAAGAAGAAAAGTTTGGGTATGAATAAG-A-CCCAC-
--CACGTCCAAG---CTCCTCCAACCGCTCCAATGGTCTCCGGGGTGGCCACTGCCTCTCCGGCAACGGCACGCCACCAA
CC-----------CACCGCCCCTACCGGAGGCAAACCGGCTCGAAAGCCGACAGCGGCGGCGGCGGCGCTCGTGGAGGCG
GCCGCGAAGAAAAAGATGAAGAAGGCCAAAGTGGTGCCTCATCCGAGGCCGCCGCCTTGTGCTGCAACCCCAGCAGCCCC
TATGGCGACAGCTCCGGCAAGAGCGGCGGCCGCAGCCGGCAACAAGATCA------
>chr4B_3316
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TAAGGGCATTTCTAACTGATCCCATAAAAGACCATAAGGGA
GT----------AAAACT-TCGGTTATACTCCCTTAGGGCGCACCTAGCCGGTCCCCTATCCGGCTTAGTGGAGTAATTT
TTTTACTTCAACTCCCAATATC--CCCCCAAATCTCCTTATTT-TTACTCACTCCCGTGGCAGCCGAATAAAACTAAC--
--GCCTCTCTCTCTTTCTCCCACACCGC--ACCGCCCTGTCTCCCACCGCCAGAGCTG--ATGTGCCCCGCC--------
--ACCGCCACAGATGACTATCCGGCTAGCCAGAATGGATAGCCTGGACCCTTCCCTCACCCCAG--------------GG
GTCATCACCGCCGGAAATCA-TCCATG---TGCCGCCGGCCATGCCGAAGAAGAGTTTGGGGATGAAAAAAACC---AC-
--CACATCAAAGCTCCTCCA---------------------AGGGTGGCCACTGCTTCTCCGGCAACAGCCCGCTGCCCT
CC-----------TACCGCACCTGCCGGAGCCAAATGAGCTCGAAAGCCAACGGCGGCAGCATAGGCGCTCGCTGAGGCG
GCTGCGAAGAAGAAGATGAAGAAGGCCAAAGTGGCGCCTCGTCCTAGGCCGGCGCTTGGTGCAGCTACTCTGGCGC----
--------------------------------------------------------
>chr2A_3316
TAAGGC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTCCTAACCCATCCCATAAAAGGCCATAAGACC
ATAAGGGTGTAAAAA--A-TCGATTATACTTCCTTATGGGGCACCTAGCCGATCCCCTAAAAAGCATAGTGGGGTAATTT
TTTTACTCCAACTCCCGATATC--CCC--AAATCTCCCTAAAT-ATACTCACTCCCGCGATGGCCGAGTAAGACTGGT--
--GCCTC--TCTTTCTC-CTACCCAGCGTCG----CCCGTCTCCCGGCGACGCAGCCGCCAT--GCCCCACCCCCCTCCC
CCGCCGCCACCAATGACAGTCTGGTTGGCCGGAATGGATAGCCCAGCCTCTTTCCTCACCCCGCTGGCCATCGTCGCCGG
--------------AAATCA-CCCA---------------CGCACCGAAGGAGAGTTTGGGGATGAAAAATAA-CCCAC-
--CGCGTCCAAG---CTCCTCCAACCGCTCCAATGGCCTCCAGGGTGGCCACCGCCTCTCCGGCAACGGCCCGCCACCCT
CC-----------CGCCGCACCTGTCGGAGCCAAACGAGCTCGAAAGCCGCCAGC-----------A-CTCGCTGGGGCG
GCCGCGAAGAAGAAGATGAAGAAGGCCAAAGTGGCGCCTCGTGCT------------------GCAACTCCGGCGGCCCC
TACGGCCACTGCTCCGGCACGGGCGGCGGCTTCAGCCGGCAAGAAGCATCACGG--
>chr7A_3316
TAAGG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------CATTTCTAATTGAT-CCCTTAAAGTCCATAAGGGA
GT----------AAAAAAGTTGGTTTTACCCCCTTACAGCGCACCTAGCCAATCCCCTTGAAGTCATAGTGGAGTAAA-T
TTTTACTCCAACTCTCAATATC--CCTCCAAATCTCCCAAAAT-TAACTCACTCGTGCGACCGTCGAGTAAAACTAAAAC
TAGCGCC--TCTCCTTCTCCCACCCCACGCGCCACCCTGTCTCACACGGCCTCATCCGCCGC--GCCCCAAC--------
--ACCGCCACCGATGACTGTTCGTTCGGCCGGAATGGATAGCCCGGACCCTTCCCCCAACCCGCCGACCACTACCGCCGG
CTTTTCGCCGCTGGAAATCA-CC-ACG---CGTCGCCGCCCATGCCGAAGAAGAGGTTGGGGATAAAAAAATA-C--AA-
--CATGCTCAAGCTCCTCCTCCAATCGCCCCAATGGCCTTAGGGGTGGCCAGCGCCTCCCTGGCACGGGCCCATAGCCCT
CC--------------------CCCCGGAGCCAAACGAGCTCGGAAGACGATGTCGGCAGCCACTGCGCTTGTCGAGGCG
GCTGCGAAGAAGAAGAAGAAGAAGAAG-----------------------------------------------------
--------------------------------------------------------
>chr1D_3320
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GACATTTCTAATCGATCCCCTAAAAGATCATAAGGGA
GT----------AAAATT-TCTGGTTTACTCCCTTACGGCGCACCTAGCCCCTCCCTTATCCGGCTTAGTGTAGTGAAAT
TTTTACTCCACCACCCTATTTCTTCCA--AAATTTCCCTAAAT-TTACTCAATCCCACCGCGGCCGAGCAAAACTGTC--
--ACCTC--TTCCTCTCGCCCTACCCGC--GCCGCACTGTCTCTGGCTGACGCAGCCGCCAC--GCACCTCC--------
--GCCGCCACCGATGACCGCCGGGCCGGACGGAATGGATAGCCCGGCCCCTTCCCTCACCCCGCCGGCCGTTGGCGCTGG
CTTTTCGCCGCCGGAAACCA-CCCACG---TGCCGCCGCAGCCGCCGAATAAGAGTTTGGGTATGAAGAAGACTT--GT-
--CGTATCCAAGGTCCTCCTCCGATCGCTCCAATGGTCTCCGGGGTGGCCACCGCCTCTCCGGCAACGACAGGCCGCCCT
CC-----------TGCCGCACCTACCGGAGGCAAACAGGCTCGAAAGCCGATGGCAACGGCGTCGCCGCTCACGAAGGCG
GCCGCCAAGAAGAAGATGAAGAAGGCCAAAGTGGCGCCTCATCCTTGGCCGACGCCTCGTACTGCAACTCCGGCAGCCCC
TATGGCGATTACTCTGGCGCGAACGGCGACGGCAGCCGGCAACAAGAATCACGGCC
>chr1A_3327
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CTAACCGATCCCCTAAAAGGCCATAAGGGA
GT----------AAAATT-TTGGTTATACTCCCTTATTGCACAACTAGCCGATCCCCTATCCGGCTTAGTGGAGTAATTT
TTTTACTCCAACTCCGAATATG--CTCCCAAAACTTTCTAAAT-TTACTCACTCTTGCGGTGGGCTAGTAAAACTGAT--
--GCCTC--TCTCTTTCTCCCACCGTGC--GCCACCATGTATCCCGCTGCCGAAGATGCTAC--GCCCCACC--------
--GTCGCCACCGATGACCATCCGGCCAGCCGAAATGGATAGCCTGGACCCTTCCCTCACCCGCCAGACAC----------
-----CACCACCGAAAATCACCC-ATG---CACCGCCGTACGCGCTGAAGAAGAGTTTGGGGATGAAAAAAAAAC--AT-
--CGTGTCCAAGCT-CTCCTCCAACCGCCCCAATGGCCTCTAGGGTGGCCACTGCCTCTCTAGCAATGGCCCGCCGCCCT
CC-----------CGCTGCACCCGCCGGCACCAAACAAGCTAGAAAGCGGACGACGGGGGCGTCGGCGCTCGCCCATGCG
CCCACCAATAAGAAGATGAAGAAGTCCAAAGTGGCGCCTTGTCCTAGACCGGCTCCTCGTGCAACTACTCCGGCG-----
--------------------------------------------------------
>chr2D_3381
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGCGCACCTAGTCGATCCCTTAAAAAGCTTAACAAAGTA--TT
TTTTACTCCACCTCCCTATTCT--CCCTGAAATCTCCCTAAGT-TTACTCCATCCCGCCACGGCCAAGTAAAAGTGGT--
--GCCTC--TCTCTCTCGCCCCTCCCGC--GTCGCACTGTCTCCCGCCGACGCAGCCGCCAC--ACCCCGCC--------
--GCCGCCATCGATGATCGTCGGCCCGGCTGGAATGGATAGCCCGACCCCTTCCCTCACCCCGTCGGCCACCGGAGTCGA
CTTTTTGCCGCTGGAAACCA-CCCAGG---CACCGCCTCCGCTGCCGAAGAAGAGTTTGGGTATGAAGAAGACTC--ACA
CACGTGTCCAAGCTCCTCCTCCAACCACTCCAATGGTCTTCGGGGTGGCCACCACCTCTCCGACAACA------------
-------------CGCCGCACCTACCGGAGGCAAACATGCTCGAAAGCCGATGGCGGCGGCTTAACA-CTCGCGGAGGGG
GCCGCGAAGAAGAAGATGAAGAAGGCCAAAGTGGTGCCTCGTCCTAGGCCGGCTCCTCGTCTTGCAACTCTGGTAGCCCC
TGCGGTGACTGCTCCGGCGCGAGCGGCGGCCGCAGTTGGCAACAAGAGTCGCGGCC
>SNPs
-----------------------S--------------------------------------------------------
------S--------------------------------------------------------------------S----
-------------------------------S------------------------------------------------
-----------------------------------S--------------------------------------------
--------S---------------------------------------------------------S-------------
----------SSS--------------S-------------------------S---------------S----------
----S-----S------S-----------------------------------------------------S--------
---------------------------------S----------------------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-----S--------------------------------------------------------------------------
------------------------------------S------S------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S---------------------------------------------------S--------------------
-----------------------S-S------------------S--------------------------------S--
S-S----------------S------------------------------------------------------------
-------------------------------------------------------------------------------S
------------------S--------------S-----S-------S----------------------S---------
---------------------------------S------------------S-S-----------S---S---------
----S--S---S--S-S--------S-----------S---------------------------------S--------
SSSS-S-S-SS-S-S--S-----S--S-------------S-------S-------------------------------
----------------------------------------------------S---------------------------
-----------------------------SS----------------------------S------------S-------
--S-----------------S--------------S--------------------------------S-----S-----
----------------S---------------------------------------------------------------
-------------------SS-S-------------SSS----------------------S---------------S-S
----S----------------S--------------------S-------SSSSSS------------------S-----
------------S----------------------S------------S-------------------------------
----------------------------S----S--S----------------------------SS-------------
---------------------------------------------------------S--------SS------------
------------------------------------------------------------------------------S-
-------------S-----------------------------------------------------------------S
---S------------------------------S----S----------------------------------------
-----S--------------------------S---------------S---------------------S---------
------S-------S----------------------------------------------S------S-----------
---------------------------------S----------S-S---------------------------------
------------------S-----------------------------S--S--------------S-------------
---------------------------------------S-S---------------------S----------------
-S--S---------------------------------------------------------------------------
----S------------S-----S------------------S-------------
>forward_24
----TGCAGGTCAGCAATTCACTT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_1980
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CAGATGGTTGGGGACTGGTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_1928
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CCAGTGTTGATG
TTGTGCCG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_2942
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCTCCCACAAAACCTCGCT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>forward_2529
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CCCTAAGCTGACGAACCTGG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>reverse_3591
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TCGCCAGCAT
CGATTACCAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
